Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41798.t1 | XP_003624717.1 | 97.3 | 596 | 9 | 2 | 1 | 596 | 1 | 589 | 0.00E+00 | 1115.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41798.t1 | Q9FKP2 | 50.3 | 577 | 251 | 10 | 15 | 587 | 12 | 556 | 1.2e-138 | 495.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41798.t1 | G7L1K1 | 97.3 | 596 | 9 | 2 | 1 | 596 | 1 | 589 | 0.0e+00 | 1115.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene41798 | 0.813026 | 3.15E-51 | -1.69E-46 |
| MS.gene04917 | MS.gene41798 | 0.813815 | 2.11E-51 | -1.69E-46 |
| MS.gene050317 | MS.gene41798 | 0.807665 | 4.52E-50 | -1.69E-46 |
| MS.gene050361 | MS.gene41798 | 0.837071 | 6.45E-57 | -1.69E-46 |
| MS.gene050654 | MS.gene41798 | 0.802188 | 6.32E-49 | -1.69E-46 |
| MS.gene050762 | MS.gene41798 | 0.842442 | 2.58E-58 | -1.69E-46 |
| MS.gene050763 | MS.gene41798 | 0.843576 | 1.29E-58 | -1.69E-46 |
| MS.gene050826 | MS.gene41798 | 0.814555 | 1.45E-51 | -1.69E-46 |
| MS.gene050941 | MS.gene41798 | 0.801709 | 7.92E-49 | -1.69E-46 |
| MS.gene052434 | MS.gene41798 | 0.824102 | 9.68E-54 | -1.69E-46 |
| MS.gene054379 | MS.gene41798 | 0.834436 | 3.00E-56 | -1.69E-46 |
| MS.gene054823 | MS.gene41798 | 0.810896 | 9.18E-51 | -1.69E-46 |
| MS.gene055311 | MS.gene41798 | 0.822573 | 2.20E-53 | -1.69E-46 |
| MS.gene055313 | MS.gene41798 | 0.802286 | 6.03E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene41798 | 0.816286 | 5.98E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene41798 | 0.822227 | 2.65E-53 | -1.69E-46 |
| MS.gene058638 | MS.gene41798 | 0.81495 | 1.19E-51 | -1.69E-46 |
| MS.gene058639 | MS.gene41798 | 0.82333 | 1.47E-53 | -1.69E-46 |
| MS.gene058646 | MS.gene41798 | 0.820237 | 7.63E-53 | -1.69E-46 |
| MS.gene06010 | MS.gene41798 | 0.845598 | 3.68E-59 | -1.69E-46 |
| MS.gene060296 | MS.gene41798 | 0.820423 | 6.91E-53 | -1.69E-46 |
| MS.gene060802 | MS.gene41798 | 0.811641 | 6.32E-51 | -1.69E-46 |
| MS.gene060869 | MS.gene41798 | 0.842826 | 2.04E-58 | -1.69E-46 |
| MS.gene060870 | MS.gene41798 | 0.861704 | 8.51E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41798.t1 | MTR_7g086690 | 97.315 | 596 | 9 | 2 | 1 | 596 | 1 | 589 | 0.0 | 1163 |
| MS.gene41798.t1 | MTR_6g027570 | 63.527 | 584 | 197 | 6 | 12 | 595 | 10 | 577 | 0.0 | 649 |
| MS.gene41798.t1 | MTR_6g027580 | 48.818 | 592 | 280 | 9 | 5 | 590 | 12 | 586 | 1.49e-161 | 474 |
| MS.gene41798.t1 | MTR_8g021180 | 43.271 | 587 | 298 | 7 | 29 | 587 | 67 | 646 | 3.71e-145 | 435 |
| MS.gene41798.t1 | MTR_7g113730 | 32.063 | 446 | 242 | 10 | 97 | 528 | 59 | 457 | 1.53e-44 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41798.t1 | AT5G17860 | 48.059 | 541 | 261 | 4 | 52 | 590 | 45 | 567 | 6.91e-168 | 490 |
| MS.gene41798.t1 | AT5G17850 | 50.258 | 581 | 251 | 10 | 15 | 590 | 12 | 559 | 4.10e-164 | 480 |
| MS.gene41798.t1 | AT5G17850 | 50.258 | 581 | 251 | 10 | 15 | 590 | 12 | 559 | 4.10e-164 | 480 |
| MS.gene41798.t1 | AT5G17860 | 46.939 | 539 | 235 | 3 | 52 | 590 | 45 | 532 | 1.51e-159 | 468 |
| MS.gene41798.t1 | AT1G54115 | 42.832 | 558 | 276 | 6 | 63 | 587 | 91 | 638 | 3.55e-151 | 450 |
| MS.gene41798.t1 | AT3G14070 | 43.534 | 549 | 283 | 7 | 63 | 587 | 92 | 637 | 7.50e-147 | 439 |
| MS.gene41798.t1 | AT1G08960 | 30.237 | 506 | 291 | 13 | 39 | 528 | 26 | 485 | 5.12e-54 | 193 |
Find 102 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGGAAATTTCCCTTTAT+TGG | 0.076464 | 7.4:+21000315 | MS.gene41798:CDS |
| ACTTGGTTCTCTTCAATTTA+AGG | 0.089846 | 7.4:+21001770 | MS.gene41798:CDS |
| CACAAGGGTTGTTTGATTTA+AGG | 0.133984 | 7.4:-21000249 | None:intergenic |
| TCATCAAGCCTATTAGTTTA+TGG | 0.163372 | 7.4:+21001186 | MS.gene41798:CDS |
| ATTGGTTCTCTTCTATCTTT+TGG | 0.181075 | 7.4:+21000363 | MS.gene41798:CDS |
| AGCCTATTAGTTTATGGAAT+TGG | 0.211692 | 7.4:+21001192 | MS.gene41798:CDS |
| AGTTTATGGAATTGGGTTAT+TGG | 0.214182 | 7.4:+21001200 | MS.gene41798:CDS |
| AATTTAACAATGGCTTTAAA+TGG | 0.222751 | 7.4:+21001459 | MS.gene41798:CDS |
| ACTTCATTTCTCTTATTCTT+AGG | 0.245806 | 7.4:+21001736 | MS.gene41798:CDS |
| GCCAATGTCTCCCACAAATA+TGG | 0.253071 | 7.4:-21001618 | None:intergenic |
| TAGAATGTTACTTTATGTTT+TGG | 0.260934 | 7.4:+21001014 | MS.gene41798:CDS |
| ATTGGAAATTTCCCTTTATT+GGG | 0.271619 | 7.4:+21000316 | MS.gene41798:CDS |
| GGTGTCACTCTTCTCTCTCT+TGG | 0.274952 | 7.4:+21000463 | MS.gene41798:CDS |
| TTATTGGTTGGAATTATATT+AGG | 0.290689 | 7.4:+21001216 | MS.gene41798:CDS |
| AACTAATAGGCTTGATGAAT+TGG | 0.297305 | 7.4:-21001181 | None:intergenic |
| GATGAAGTTGAAAGTGATTA+TGG | 0.331110 | 7.4:+21000832 | MS.gene41798:CDS |
| ATTGGATTCAACACTGTTCT+TGG | 0.331351 | 7.4:+21000547 | MS.gene41798:CDS |
| GCCTATTAGTTTATGGAATT+GGG | 0.332807 | 7.4:+21001193 | MS.gene41798:CDS |
| AAAAGGGTATGACCCAATAA+AGG | 0.334456 | 7.4:-21000328 | None:intergenic |
| AGGCTTTCACCAACTATTGC+TGG | 0.335790 | 7.4:+21000442 | MS.gene41798:CDS |
| GGGGCTCAAATAGCAATTTC+AGG | 0.338302 | 7.4:+21001492 | MS.gene41798:CDS |
| AAAGTTTCTGTTATTATTGT+TGG | 0.338919 | 7.4:-21000152 | None:intergenic |
| ACCCAATTCCATAAACTAAT+AGG | 0.345445 | 7.4:-21001194 | None:intergenic |
| TTTGGTTGTTGGATTGATTT+GGG | 0.349011 | 7.4:+21001644 | MS.gene41798:CDS |
| TTCAATACAGTTGTTGGATT+GGG | 0.352207 | 7.4:+21001534 | MS.gene41798:CDS |
| CTTGTTTCTTTCAAAGGTAA+TGG | 0.356613 | 7.4:+21000514 | MS.gene41798:CDS |
| TTGTTTCTTTCAAAGGTAAT+GGG | 0.357414 | 7.4:+21000515 | MS.gene41798:CDS |
| ATTTCAGCTCAAGAATTAGT+AGG | 0.359746 | 7.4:+21001339 | MS.gene41798:CDS |
| CCTATCTTCAATACAGTTGT+TGG | 0.365242 | 7.4:+21001528 | MS.gene41798:CDS |
| CACAACAACACAAGAAATAA+AGG | 0.365515 | 7.4:-21000578 | None:intergenic |
| GTTTCACTTGGTTTCATATG+TGG | 0.378949 | 7.4:+21001369 | MS.gene41798:CDS |
| GTGTCACTCTTCTCTCTCTT+GGG | 0.389245 | 7.4:+21000464 | MS.gene41798:CDS |
| GGTGTTAATCCTTCAATACT+TGG | 0.389771 | 7.4:+21001390 | MS.gene41798:CDS |
| GATTTAGATGTTCCTCTACT+TGG | 0.392499 | 7.4:+21000883 | MS.gene41798:CDS |
| CTTCAATACAGTTGTTGGAT+TGG | 0.393064 | 7.4:+21001533 | MS.gene41798:CDS |
| TTGTTACCATGGCTAGCTGC+AGG | 0.398686 | 7.4:+21001288 | MS.gene41798:CDS |
| TTTATTTCTTGTGTTGTTGT+GGG | 0.405964 | 7.4:+21000580 | MS.gene41798:CDS |
| TGGATTAACAGTACTTGCTT+GGG | 0.408172 | 7.4:+21001410 | MS.gene41798:CDS |
| ATATGCCTCTTTACCTTCCT+AGG | 0.411774 | 7.4:+21001037 | MS.gene41798:CDS |
| TATCTCTTGTTACATCTACT+TGG | 0.418938 | 7.4:+21001559 | MS.gene41798:CDS |
| CTTTATTTCTTGTGTTGTTG+TGG | 0.419235 | 7.4:+21000579 | MS.gene41798:CDS |
| TTTCCTTTGGATTCCATACA+AGG | 0.420611 | 7.4:+21001146 | MS.gene41798:CDS |
| ACTGTTAATCCAAGTATTGA+AGG | 0.428915 | 7.4:-21001399 | None:intergenic |
| CCAACAACTGTATTGAAGAT+AGG | 0.432471 | 7.4:-21001528 | None:intergenic |
| GCAATTTCAGGTTGTTATGC+TGG | 0.432764 | 7.4:+21001504 | MS.gene41798:CDS |
| TTGGATTAACAGTACTTGCT+TGG | 0.435057 | 7.4:+21001409 | MS.gene41798:CDS |
| TATGGAATTGGGTTATTGGT+TGG | 0.441874 | 7.4:+21001204 | MS.gene41798:CDS |
| CCAATAACCATAGAAACAAA+AGG | 0.447694 | 7.4:-21000345 | None:intergenic |
| AATAACAGAAACTTTGTCTC+TGG | 0.459319 | 7.4:+21000160 | MS.gene41798:CDS |
| ACTCTTCTCTCTCTTGGGAA+TGG | 0.465576 | 7.4:+21000469 | MS.gene41798:CDS |
| GCCACACTTGTTTCTTTCAA+AGG | 0.465678 | 7.4:+21000508 | MS.gene41798:CDS |
| TTGTTCAGTGTCTTCATCAA+TGG | 0.469754 | 7.4:+21000697 | MS.gene41798:CDS |
| TGGTGAAAGCCTCAAAACTT+TGG | 0.469895 | 7.4:-21000431 | None:intergenic |
| TCCATATTTGTGGGAGACAT+TGG | 0.474566 | 7.4:+21001617 | MS.gene41798:CDS |
| CTAGGTATCACAATAGATGA+AGG | 0.475246 | 7.4:-21001591 | None:intergenic |
| CTTAGGCTTACTCAAACACT+TGG | 0.475303 | 7.4:+21001753 | MS.gene41798:CDS |
| ACAGGAATTGTTAATCTCCT+AGG | 0.476448 | 7.4:-21001054 | None:intergenic |
| CAGATTCATAGCAATTCAAA+TGG | 0.477046 | 7.4:+21000928 | MS.gene41798:CDS |
| AAAGGGTATGACCCAATAAA+GGG | 0.479389 | 7.4:-21000327 | None:intergenic |
| GCTTTAAATGGTGGGCCAGA+GGG | 0.482620 | 7.4:+21001471 | MS.gene41798:CDS |
| ATCAATGTTGTTGTGGCAGT+TGG | 0.487147 | 7.4:+21000724 | MS.gene41798:CDS |
| ATGAAGCTTGATGCAATGTT+AGG | 0.498376 | 7.4:+21001693 | MS.gene41798:CDS |
| TAACAATGGCTTTAAATGGT+GGG | 0.499024 | 7.4:+21001463 | MS.gene41798:CDS |
| GTCACATCTAGCAAAAGAAA+AGG | 0.510055 | 7.4:+21000787 | MS.gene41798:CDS |
| TTAACAATGGCTTTAAATGG+TGG | 0.512871 | 7.4:+21001462 | MS.gene41798:CDS |
| TTTCAGCTCAAGAATTAGTA+GGG | 0.519227 | 7.4:+21001340 | MS.gene41798:CDS |
| GTAGGGTTGTTAGTTTCACT+TGG | 0.521163 | 7.4:+21001357 | MS.gene41798:CDS |
| GGTAATGGGACACAAGGCAT+TGG | 0.522056 | 7.4:+21000529 | MS.gene41798:CDS |
| TTTAAATGGTGGGCCAGAGG+GGG | 0.522665 | 7.4:+21001473 | MS.gene41798:CDS |
| TGTTACCATGGCTAGCTGCA+GGG | 0.525417 | 7.4:+21001289 | MS.gene41798:CDS |
| TCCCACAAATATGGATCTCT+AGG | 0.527255 | 7.4:-21001609 | None:intergenic |
| CAAAGGAAAGCTAATAAAAG+TGG | 0.528694 | 7.4:-21001132 | None:intergenic |
| GGATTCAACACTGTTCTTGG+TGG | 0.529370 | 7.4:+21000550 | MS.gene41798:CDS |
| TACCTAGAGATCCATATTTG+TGG | 0.534234 | 7.4:+21001607 | MS.gene41798:CDS |
| CTCTGGTGTCACTGATGATG+AGG | 0.535420 | 7.4:+21000177 | MS.gene41798:CDS |
| GGCTTTAAATGGTGGGCCAG+AGG | 0.537518 | 7.4:+21001470 | MS.gene41798:CDS |
| CAAGAAAATTCTTGTTACCA+TGG | 0.539455 | 7.4:+21001277 | MS.gene41798:CDS |
| TTGGAGAGATTATCAAGAGA+AGG | 0.561396 | 7.4:-21000412 | None:intergenic |
| ACCTAGAGATCCATATTTGT+GGG | 0.562034 | 7.4:+21001608 | MS.gene41798:CDS |
| CAATAACCATAGAAACAAAA+GGG | 0.563756 | 7.4:-21000344 | None:intergenic |
| GGATTAACAGTACTTGCTTG+GGG | 0.569748 | 7.4:+21001411 | MS.gene41798:CDS |
| CTTTAAATGGTGGGCCAGAG+GGG | 0.577285 | 7.4:+21001472 | MS.gene41798:CDS |
| TATGGTGATTCAAGAAGTCA+TGG | 0.578121 | 7.4:+21000850 | MS.gene41798:CDS |
| TTTCCTTGTATGGAATCCAA+AGG | 0.578564 | 7.4:-21001149 | None:intergenic |
| AGAGTGACACCAGCAATAGT+TGG | 0.584420 | 7.4:-21000451 | None:intergenic |
| CTTGATGCAATGTTAGGTGG+AGG | 0.588704 | 7.4:+21001699 | MS.gene41798:CDS |
| AATCTCCTAGGAAGGTAAAG+AGG | 0.595886 | 7.4:-21001042 | None:intergenic |
| TTTAGTGACTAATTTAACAA+TGG | 0.604981 | 7.4:+21001449 | MS.gene41798:CDS |
| TTCAAAGGTAATGGGACACA+AGG | 0.612012 | 7.4:+21000523 | MS.gene41798:CDS |
| ACATAGCCTTGTGTGACACA+AGG | 0.613048 | 7.4:-21000265 | None:intergenic |
| ACAAACCCTGCAGCTAGCCA+TGG | 0.621070 | 7.4:-21001294 | None:intergenic |
| TGGTGAAATCAATGTTGTTG+TGG | 0.630057 | 7.4:+21000717 | MS.gene41798:CDS |
| AAGCTTGATGCAATGTTAGG+TGG | 0.631062 | 7.4:+21001696 | MS.gene41798:CDS |
| GATTCAAGAAGTCATGGCAA+TGG | 0.631409 | 7.4:+21000856 | MS.gene41798:CDS |
| TAGGTATCACAATAGATGAA+GGG | 0.638422 | 7.4:-21001590 | None:intergenic |
| GATTAACAGTACTTGCTTGG+GGG | 0.639126 | 7.4:+21001412 | MS.gene41798:CDS |
| AACAACCCTTGTGTCACACA+AGG | 0.639893 | 7.4:+21000259 | MS.gene41798:CDS |
| GAATTGTTAATCTCCTAGGA+AGG | 0.651968 | 7.4:-21001050 | None:intergenic |
| CATAGCCTTGTGTGACACAA+GGG | 0.653566 | 7.4:-21000264 | None:intergenic |
| ACCTTTGAAAGAAACAAGTG+TGG | 0.657131 | 7.4:-21000509 | None:intergenic |
| TTCTCCATAAAACCAAGTAG+AGG | 0.658159 | 7.4:-21000895 | None:intergenic |
| GGTTTGTGATGAGTGTGACA+TGG | 0.672642 | 7.4:+21001310 | MS.gene41798:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTTTCTGTTATTATTGT+TGG | - | chr7.4:21000155-21000174 | None:intergenic | 20.0% |
| !! | TTTAGTGACTAATTTAACAA+TGG | + | chr7.4:21001449-21001468 | MS.gene41798:CDS | 20.0% |
| !!! | AATTTAACAATGGCTTTAAA+TGG | + | chr7.4:21001459-21001478 | MS.gene41798:CDS | 20.0% |
| !!! | TACATTTTCTATTGCAAAAT+TGG | + | chr7.4:21000298-21000317 | MS.gene41798:CDS | 20.0% |
| !!! | TAGAATGTTACTTTATGTTT+TGG | + | chr7.4:21001014-21001033 | MS.gene41798:CDS | 20.0% |
| !!! | TTATTGGTTGGAATTATATT+AGG | + | chr7.4:21001216-21001235 | MS.gene41798:CDS | 20.0% |
| !!! | TTTTGCAATAGAAAATGTAA+AGG | - | chr7.4:21000297-21000316 | None:intergenic | 20.0% |
| ! | AATTGGAAATTTCCCTTTAT+TGG | + | chr7.4:21000315-21000334 | MS.gene41798:CDS | 25.0% |
| ! | ACTTCATTTCTCTTATTCTT+AGG | + | chr7.4:21001736-21001755 | MS.gene41798:CDS | 25.0% |
| ! | ATTGGAAATTTCCCTTTATT+GGG | + | chr7.4:21000316-21000335 | MS.gene41798:CDS | 25.0% |
| ! | CAATAACCATAGAAACAAAA+GGG | - | chr7.4:21000347-21000366 | None:intergenic | 25.0% |
| ! | GAAAAACACAAAACAACAAA+AGG | - | chr7.4:21000078-21000097 | None:intergenic | 25.0% |
| !! | TTGTTTCTTTCAAAGGTAAT+GGG | + | chr7.4:21000515-21000534 | MS.gene41798:CDS | 25.0% |
| !! | TTTATTTCTTGTGTTGTTGT+GGG | + | chr7.4:21000580-21000599 | MS.gene41798:CDS | 25.0% |
| AACTAATAGGCTTGATGAAT+TGG | - | chr7.4:21001184-21001203 | None:intergenic | 30.0% | |
| AATAACAGAAACTTTGTCTC+TGG | + | chr7.4:21000160-21000179 | MS.gene41798:CDS | 30.0% | |
| ACCCAATTCCATAAACTAAT+AGG | - | chr7.4:21001197-21001216 | None:intergenic | 30.0% | |
| AGTTTATGGAATTGGGTTAT+TGG | + | chr7.4:21001200-21001219 | MS.gene41798:CDS | 30.0% | |
| ATTTCAGCTCAAGAATTAGT+AGG | + | chr7.4:21001339-21001358 | MS.gene41798:CDS | 30.0% | |
| CAAAGGAAAGCTAATAAAAG+TGG | - | chr7.4:21001135-21001154 | None:intergenic | 30.0% | |
| CAAGAAAATTCTTGTTACCA+TGG | + | chr7.4:21001277-21001296 | MS.gene41798:CDS | 30.0% | |
| CACAACAACACAAGAAATAA+AGG | - | chr7.4:21000581-21000600 | None:intergenic | 30.0% | |
| CAGATTCATAGCAATTCAAA+TGG | + | chr7.4:21000928-21000947 | MS.gene41798:CDS | 30.0% | |
| CCAATAACCATAGAAACAAA+AGG | - | chr7.4:21000348-21000367 | None:intergenic | 30.0% | |
| GATGAAGTTGAAAGTGATTA+TGG | + | chr7.4:21000832-21000851 | MS.gene41798:CDS | 30.0% | |
| TAGGTATCACAATAGATGAA+GGG | - | chr7.4:21001593-21001612 | None:intergenic | 30.0% | |
| TATCTCTTGTTACATCTACT+TGG | + | chr7.4:21001559-21001578 | MS.gene41798:CDS | 30.0% | |
| TTCAATACAGTTGTTGGATT+GGG | + | chr7.4:21001534-21001553 | MS.gene41798:CDS | 30.0% | |
| TTTCAGCTCAAGAATTAGTA+GGG | + | chr7.4:21001340-21001359 | MS.gene41798:CDS | 30.0% | |
| ! | AATAGCAATTTTCACAACTG+AGG | + | chr7.4:21001242-21001261 | MS.gene41798:CDS | 30.0% |
| ! | ACTTGGTTCTCTTCAATTTA+AGG | + | chr7.4:21001770-21001789 | MS.gene41798:CDS | 30.0% |
| ! | AGCCTATTAGTTTATGGAAT+TGG | + | chr7.4:21001192-21001211 | MS.gene41798:CDS | 30.0% |
| ! | ATAATCTCTCCAAAGTTTTG+AGG | + | chr7.4:21000422-21000441 | MS.gene41798:CDS | 30.0% |
| ! | CATGGTAACAAGAATTTTCT+TGG | - | chr7.4:21001279-21001298 | None:intergenic | 30.0% |
| ! | CATTTTTCTTCACAAACAAC+AGG | - | chr7.4:21001075-21001094 | None:intergenic | 30.0% |
| ! | CTGTTGTTTGTGAAGAAAAA+TGG | + | chr7.4:21001073-21001092 | MS.gene41798:CDS | 30.0% |
| ! | CTTGTTTCTTTCAAAGGTAA+TGG | + | chr7.4:21000514-21000533 | MS.gene41798:CDS | 30.0% |
| ! | CTTTATTTCTTGTGTTGTTG+TGG | + | chr7.4:21000579-21000598 | MS.gene41798:CDS | 30.0% |
| ! | GCCTATTAGTTTATGGAATT+GGG | + | chr7.4:21001193-21001212 | MS.gene41798:CDS | 30.0% |
| ! | TCATCAAGCCTATTAGTTTA+TGG | + | chr7.4:21001186-21001205 | MS.gene41798:CDS | 30.0% |
| ! | TTTGGTTGTTGGATTGATTT+GGG | + | chr7.4:21001644-21001663 | MS.gene41798:CDS | 30.0% |
| !! | ACTGTTAATCCAAGTATTGA+AGG | - | chr7.4:21001402-21001421 | None:intergenic | 30.0% |
| !! | ATTGGTTCTCTTCTATCTTT+TGG | + | chr7.4:21000363-21000382 | MS.gene41798:CDS | 30.0% |
| !! | TAACAATGGCTTTAAATGGT+GGG | + | chr7.4:21001463-21001482 | MS.gene41798:CDS | 30.0% |
| !! | TGGTTTTTGTTTGATGTATG+TGG | + | chr7.4:21000744-21000763 | MS.gene41798:CDS | 30.0% |
| !! | TTAACAATGGCTTTAAATGG+TGG | + | chr7.4:21001462-21001481 | MS.gene41798:CDS | 30.0% |
| !! | TTTTGGTTGTTGGATTGATT+TGG | + | chr7.4:21001643-21001662 | MS.gene41798:CDS | 30.0% |
| !!! | CACTTTTATTAGCTTTCCTT+TGG | + | chr7.4:21001133-21001152 | MS.gene41798:CDS | 30.0% |
| !!! | CCTTTTGTTTCTATGGTTAT+TGG | + | chr7.4:21000345-21000364 | MS.gene41798:CDS | 30.0% |
| ACAGGAATTGTTAATCTCCT+AGG | - | chr7.4:21001057-21001076 | None:intergenic | 35.0% | |
| ACCTAGAGATCCATATTTGT+GGG | + | chr7.4:21001608-21001627 | MS.gene41798:CDS | 35.0% | |
| ATGAAGCTTGATGCAATGTT+AGG | + | chr7.4:21001693-21001712 | MS.gene41798:CDS | 35.0% | |
| ATTGGATTCAACACTGTTCT+TGG | + | chr7.4:21000547-21000566 | MS.gene41798:CDS | 35.0% | |
| CAAAGTGAAAAACATGCGTT+TGG | - | chr7.4:21000038-21000057 | None:intergenic | 35.0% | |
| CCAACAACTGTATTGAAGAT+AGG | - | chr7.4:21001531-21001550 | None:intergenic | 35.0% | |
| CCTATCTTCAATACAGTTGT+TGG | + | chr7.4:21001528-21001547 | MS.gene41798:CDS | 35.0% | |
| CTAGGTATCACAATAGATGA+AGG | - | chr7.4:21001594-21001613 | None:intergenic | 35.0% | |
| CTTCAATACAGTTGTTGGAT+TGG | + | chr7.4:21001533-21001552 | MS.gene41798:CDS | 35.0% | |
| GAATTGTTAATCTCCTAGGA+AGG | - | chr7.4:21001053-21001072 | None:intergenic | 35.0% | |
| GATTTAGATGTTCCTCTACT+TGG | + | chr7.4:21000883-21000902 | MS.gene41798:CDS | 35.0% | |
| GGTGTTAATCCTTCAATACT+TGG | + | chr7.4:21001390-21001409 | MS.gene41798:CDS | 35.0% | |
| GTCACATCTAGCAAAAGAAA+AGG | + | chr7.4:21000787-21000806 | MS.gene41798:CDS | 35.0% | |
| GTTTCACTTGGTTTCATATG+TGG | + | chr7.4:21001369-21001388 | MS.gene41798:CDS | 35.0% | |
| TACCTAGAGATCCATATTTG+TGG | + | chr7.4:21001607-21001626 | MS.gene41798:CDS | 35.0% | |
| TATGGAATTGGGTTATTGGT+TGG | + | chr7.4:21001204-21001223 | MS.gene41798:CDS | 35.0% | |
| TATGGTGATTCAAGAAGTCA+TGG | + | chr7.4:21000850-21000869 | MS.gene41798:CDS | 35.0% | |
| TCTGAGAAAAACGTGTTCAT+AGG | - | chr7.4:21000119-21000138 | None:intergenic | 35.0% | |
| TGGATTAACAGTACTTGCTT+GGG | + | chr7.4:21001410-21001429 | MS.gene41798:CDS | 35.0% | |
| TGGTGAAATCAATGTTGTTG+TGG | + | chr7.4:21000717-21000736 | MS.gene41798:CDS | 35.0% | |
| TTCTCCATAAAACCAAGTAG+AGG | - | chr7.4:21000898-21000917 | None:intergenic | 35.0% | |
| TTGGAGAGATTATCAAGAGA+AGG | - | chr7.4:21000415-21000434 | None:intergenic | 35.0% | |
| TTGGATTAACAGTACTTGCT+TGG | + | chr7.4:21001409-21001428 | MS.gene41798:CDS | 35.0% | |
| TTGTTCAGTGTCTTCATCAA+TGG | + | chr7.4:21000697-21000716 | MS.gene41798:CDS | 35.0% | |
| TTTCCTTGTATGGAATCCAA+AGG | - | chr7.4:21001152-21001171 | None:intergenic | 35.0% | |
| TTTCCTTTGGATTCCATACA+AGG | + | chr7.4:21001146-21001165 | MS.gene41798:CDS | 35.0% | |
| ! | AAAAGGGTATGACCCAATAA+AGG | - | chr7.4:21000331-21000350 | None:intergenic | 35.0% |
| ! | AAAGGGTATGACCCAATAAA+GGG | - | chr7.4:21000330-21000349 | None:intergenic | 35.0% |
| ! | ACCTTTGAAAGAAACAAGTG+TGG | - | chr7.4:21000512-21000531 | None:intergenic | 35.0% |
| ! | CACAAGGGTTGTTTGATTTA+AGG | - | chr7.4:21000252-21000271 | None:intergenic | 35.0% |
| ! | GAGAAACTGTTTTCCTTGTA+TGG | - | chr7.4:21001162-21001181 | None:intergenic | 35.0% |
| ! | GGTAACAAGAATTTTCTTGG+AGG | - | chr7.4:21001276-21001295 | None:intergenic | 35.0% |
| !!! | ACATTGGCATTTTTGGTTGT+TGG | + | chr7.4:21001633-21001652 | MS.gene41798:CDS | 35.0% |
| !!! | CTACTTGGTTTTATGGAGAA+GGG | + | chr7.4:21000898-21000917 | MS.gene41798:CDS | 35.0% |
| !!! | GTCATACCCTTTTGTTTCTA+TGG | + | chr7.4:21000338-21000357 | MS.gene41798:CDS | 35.0% |
| !!! | TCTACTTGGTTTTATGGAGA+AGG | + | chr7.4:21000897-21000916 | MS.gene41798:CDS | 35.0% |
| !!! | TGTTCCTCTACTTGGTTTTA+TGG | + | chr7.4:21000891-21000910 | MS.gene41798:CDS | 35.0% |
| AAGCTTGATGCAATGTTAGG+TGG | + | chr7.4:21001696-21001715 | MS.gene41798:CDS | 40.0% | |
| AATCTCCTAGGAAGGTAAAG+AGG | - | chr7.4:21001045-21001064 | None:intergenic | 40.0% | |
| ATATGCCTCTTTACCTTCCT+AGG | + | chr7.4:21001037-21001056 | MS.gene41798:CDS | 40.0% | |
| ATCAATGTTGTTGTGGCAGT+TGG | + | chr7.4:21000724-21000743 | MS.gene41798:CDS | 40.0% | |
| CTTAGGCTTACTCAAACACT+TGG | + | chr7.4:21001753-21001772 | MS.gene41798:CDS | 40.0% | |
| GATTAACAGTACTTGCTTGG+GGG | + | chr7.4:21001412-21001431 | MS.gene41798:CDS | 40.0% | |
| GATTCAAGAAGTCATGGCAA+TGG | + | chr7.4:21000856-21000875 | MS.gene41798:CDS | 40.0% | |
| GGATTAACAGTACTTGCTTG+GGG | + | chr7.4:21001411-21001430 | MS.gene41798:CDS | 40.0% | |
| TCCATATTTGTGGGAGACAT+TGG | + | chr7.4:21001617-21001636 | MS.gene41798:CDS | 40.0% | |
| TCCCACAAATATGGATCTCT+AGG | - | chr7.4:21001612-21001631 | None:intergenic | 40.0% | |
| TGGTGAAAGCCTCAAAACTT+TGG | - | chr7.4:21000434-21000453 | None:intergenic | 40.0% | |
| ! | GCCACACTTGTTTCTTTCAA+AGG | + | chr7.4:21000508-21000527 | MS.gene41798:CDS | 40.0% |
| ! | GTAGGGTTGTTAGTTTCACT+TGG | + | chr7.4:21001357-21001376 | MS.gene41798:CDS | 40.0% |
| !! | GCAATTTCAGGTTGTTATGC+TGG | + | chr7.4:21001504-21001523 | MS.gene41798:CDS | 40.0% |
| !! | TTCAAAGGTAATGGGACACA+AGG | + | chr7.4:21000523-21000542 | MS.gene41798:CDS | 40.0% |
| !!! | TGGTTTTATGGAGAAGGGAA+TGG | + | chr7.4:21000903-21000922 | MS.gene41798:CDS | 40.0% |
| AACAACCCTTGTGTCACACA+AGG | + | chr7.4:21000259-21000278 | MS.gene41798:CDS | 45.0% | |
| ACTCTTCTCTCTCTTGGGAA+TGG | + | chr7.4:21000469-21000488 | MS.gene41798:CDS | 45.0% | |
| AGAGTGACACCAGCAATAGT+TGG | - | chr7.4:21000454-21000473 | None:intergenic | 45.0% | |
| AGGCTTTCACCAACTATTGC+TGG | + | chr7.4:21000442-21000461 | MS.gene41798:CDS | 45.0% | |
| CTTGATGCAATGTTAGGTGG+AGG | + | chr7.4:21001699-21001718 | MS.gene41798:CDS | 45.0% | |
| CTTGCTTGGGGGAATTCAAT+TGG | + | chr7.4:21001423-21001442 | MS.gene41798:CDS | 45.0% | |
| GCCAATGTCTCCCACAAATA+TGG | - | chr7.4:21001621-21001640 | None:intergenic | 45.0% | |
| GGATTCAACACTGTTCTTGG+TGG | + | chr7.4:21000550-21000569 | MS.gene41798:CDS | 45.0% | |
| GGGGCTCAAATAGCAATTTC+AGG | + | chr7.4:21001492-21001511 | MS.gene41798:CDS | 45.0% | |
| GGTTTGTGATGAGTGTGACA+TGG | + | chr7.4:21001310-21001329 | MS.gene41798:CDS | 45.0% | |
| ! | GTGGGAGACATTGGCATTTT+TGG | + | chr7.4:21001626-21001645 | MS.gene41798:CDS | 45.0% |
| ! | GTGTCACTCTTCTCTCTCTT+GGG | + | chr7.4:21000464-21000483 | MS.gene41798:CDS | 45.0% |
| !! | ACATAGCCTTGTGTGACACA+AGG | - | chr7.4:21000268-21000287 | None:intergenic | 45.0% |
| !! | CATAGCCTTGTGTGACACAA+GGG | - | chr7.4:21000267-21000286 | None:intergenic | 45.0% |
| ! | TGTTACCATGGCTAGCTGCA+GGG | + | chr7.4:21001289-21001308 | MS.gene41798:CDS | 50.0% |
| ! | TTGTTACCATGGCTAGCTGC+AGG | + | chr7.4:21001288-21001307 | MS.gene41798:CDS | 50.0% |
| !! | ATTGCTATTTGAGCCCCCTC+TGG | - | chr7.4:21001489-21001508 | None:intergenic | 50.0% |
| !! | CTCTGGTGTCACTGATGATG+AGG | + | chr7.4:21000177-21000196 | MS.gene41798:CDS | 50.0% |
| !! | CTTTAAATGGTGGGCCAGAG+GGG | + | chr7.4:21001472-21001491 | MS.gene41798:CDS | 50.0% |
| !! | GCTTTAAATGGTGGGCCAGA+GGG | + | chr7.4:21001471-21001490 | MS.gene41798:CDS | 50.0% |
| !! | GGTAATGGGACACAAGGCAT+TGG | + | chr7.4:21000529-21000548 | MS.gene41798:CDS | 50.0% |
| !! | GGTGTCACTCTTCTCTCTCT+TGG | + | chr7.4:21000463-21000482 | MS.gene41798:CDS | 50.0% |
| !! | TTTAAATGGTGGGCCAGAGG+GGG | + | chr7.4:21001473-21001492 | MS.gene41798:CDS | 50.0% |
| ACAAACCCTGCAGCTAGCCA+TGG | - | chr7.4:21001297-21001316 | None:intergenic | 55.0% | |
| !! | GGCTTTAAATGGTGGGCCAG+AGG | + | chr7.4:21001470-21001489 | MS.gene41798:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 21000016 | 21001806 | 21000016 | ID=MS.gene41798 |
| chr7.4 | mRNA | 21000016 | 21001806 | 21000016 | ID=MS.gene41798.t1;Parent=MS.gene41798 |
| chr7.4 | exon | 21000016 | 21001806 | 21000016 | ID=MS.gene41798.t1.exon1;Parent=MS.gene41798.t1 |
| chr7.4 | CDS | 21000016 | 21001806 | 21000016 | ID=cds.MS.gene41798.t1;Parent=MS.gene41798.t1 |
| Gene Sequence |
| Protein sequence |
