AlfalfaGEDB | MS.gene41892

M. sativa cultivar XinJiangDaYe / MS.gene41892

KEGG: K19034
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41892.t1	XP_003624871.1	89.4	141	15	0	1	141	1	141	3.70E-29	137.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41892.t1	P11891	51.0	145	67	3	1	141	1	145	5.0e-19	95.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41892.t1	B7FHB7	89.4	141	15	0	1	141	1	141	2.6e-29	137.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049615	MS.gene41892	0.828994	6.60E-55	-1.69E-46
MS.gene050767	MS.gene41892	0.841129	5.73E-58	-1.69E-46
MS.gene050770	MS.gene41892	0.842316	2.79E-58	-1.69E-46
MS.gene05101	MS.gene41892	0.81308	3.07E-51	-1.69E-46
MS.gene051666	MS.gene41892	0.806162	9.40E-50	-1.69E-46
MS.gene051692	MS.gene41892	0.809743	1.63E-50	-1.69E-46
MS.gene052078	MS.gene41892	0.833265	5.89E-56	-1.69E-46
MS.gene052322	MS.gene41892	0.810762	9.81E-51	-1.69E-46
MS.gene053322	MS.gene41892	0.812933	3.30E-51	-1.69E-46
MS.gene054376	MS.gene41892	0.852675	3.95E-61	-1.69E-46
MS.gene054802	MS.gene41892	0.835404	1.71E-56	-1.69E-46
MS.gene054803	MS.gene41892	0.832584	8.70E-56	-1.69E-46
MS.gene054804	MS.gene41892	0.838606	2.60E-57	-1.69E-46
MS.gene055254	MS.gene41892	0.813914	2.01E-51	-1.69E-46
MS.gene055499	MS.gene41892	0.812876	3.40E-51	-1.69E-46
MS.gene055712	MS.gene41892	0.847427	1.16E-59	-1.69E-46
MS.gene056407	MS.gene41892	0.809523	1.81E-50	-1.69E-46
MS.gene056410	MS.gene41892	0.810077	1.38E-50	-1.69E-46
MS.gene057129	MS.gene41892	0.829189	5.92E-55	-1.69E-46
MS.gene057295	MS.gene41892	0.891426	4.02E-74	-1.69E-46
MS.gene057416	MS.gene41892	0.801025	1.09E-48	-1.69E-46
MS.gene058019	MS.gene41892	0.83371	4.56E-56	-1.69E-46
MS.gene058293	MS.gene41892	0.851263	9.95E-61	-1.69E-46
MS.gene058660	MS.gene41892	0.803138	4.02E-49	-1.69E-46
MS.gene058787	MS.gene41892	0.817024	4.09E-52	-1.69E-46
MS.gene059326	MS.gene41892	0.814995	1.16E-51	-1.69E-46
MS.gene059960	MS.gene41892	0.823355	1.45E-53	-1.69E-46
MS.gene060193	MS.gene41892	0.828596	8.24E-55	-1.69E-46
MS.gene060403	MS.gene41892	0.808058	3.73E-50	-1.69E-46
MS.gene061200	MS.gene41892	0.83013	3.49E-55	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41892.t1	MTR_7g088520	92.199	141	11	0	1	141	1	141	1.70e-88	254

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 38 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTGGGGTTGTGGAGGGAAT+TGG	0.246105	7.2:-20250281	None:intergenic
TGTGGAGGGAATTGGGAAAA+TGG	0.293091	7.2:-20250273	None:intergenic
TTGGGGTTGTGGAGGGAATT+GGG	0.318138	7.2:-20250280	None:intergenic
ACTCTTCAATTTCTTCATCT+TGG	0.341918	7.2:-20250734	None:intergenic
TTCTGTAGATAAGCTTCCTT+TGG	0.349663	7.2:+20250588	MS.gene41892:CDS
AGTTGAGAAAGAAGGGTAAT+TGG	0.374960	7.2:+20250704	MS.gene41892:CDS
TTCAGACCCATCTGCAACAT+TGG	0.400037	7.2:-20250536	None:intergenic
AAGAGGAAGTTGAGAAAGAA+GGG	0.409426	7.2:+20250697	MS.gene41892:CDS
TTCAATTTCTTCATCTTGGA+AGG	0.432102	7.2:-20250730	None:intergenic
TCCTTTGGAATCAAAATTGA+AGG	0.438799	7.2:+20250603	MS.gene41892:CDS
AAAGAGGAAGTTGAGAAAGA+AGG	0.445671	7.2:+20250696	MS.gene41892:CDS
AAGTCCCTTCAATGAGTTTG+TGG	0.462466	7.2:-20250443	None:intergenic
AAATGGAGGAAGAAGAAAGA+GGG	0.478465	7.2:-20250256	None:intergenic
GAAAGAGACTTGTTCAAAAG+AGG	0.482878	7.2:+20250680	MS.gene41892:CDS
TTGATAAGAAGATAAGGTTG+AGG	0.486048	7.2:+20250656	MS.gene41892:CDS
TGGAATCAAAATTGAAGGAG+AGG	0.491503	7.2:+20250608	MS.gene41892:CDS
TGAAGCTTGATAAGAAGATA+AGG	0.493499	7.2:+20250650	MS.gene41892:CDS
TCCCTCGGTTTCACAACAAA+GGG	0.494277	7.2:-20250478	None:intergenic
AGAAAGAGGGGTGAGTGTGA+TGG	0.496412	7.2:-20250243	None:intergenic
GGAATCAAAATTGAAGGAGA+GGG	0.508757	7.2:+20250609	MS.gene41892:CDS
AGTCCCTTCAATGAGTTTGT+GGG	0.524517	7.2:-20250442	None:intergenic
TTTGCCCACAAACTCATTGA+AGG	0.534777	7.2:+20250438	MS.gene41892:CDS
TTCCCTCGGTTTCACAACAA+AGG	0.535738	7.2:-20250479	None:intergenic
ACTGAATCCAATGTTGCAGA+TGG	0.538749	7.2:+20250529	MS.gene41892:CDS
ACGGTACTTACTTGGGGTTG+TGG	0.540099	7.2:-20250291	None:intergenic
TACTTACTTGGGGTTGTGGA+GGG	0.543624	7.2:-20250287	None:intergenic
TGAAGGAGAGGGAAGAGCAG+AGG	0.551586	7.2:+20250620	MS.gene41892:CDS
ATTGAAGGGACTTCGAATCT+CGG	0.553791	7.2:+20250453	MS.gene41892:CDS
GTACTTACTTGGGGTTGTGG+AGG	0.554680	7.2:-20250288	None:intergenic
TTGCCCACAAACTCATTGAA+GGG	0.555855	7.2:+20250439	MS.gene41892:CDS
AATTTCTTCATCTTGGAAGG+TGG	0.562678	7.2:-20250727	None:intergenic
AAAATGGAGGAAGAAGAAAG+AGG	0.565844	7.2:-20250257	None:intergenic
AATGGAGGAAGAAGAAAGAG+GGG	0.583049	7.2:-20250255	None:intergenic
CACCCTTTGTTGTGAAACCG+AGG	0.599124	7.2:+20250476	MS.gene41892:CDS
GGAGGGAATTGGGAAAATGG+AGG	0.607476	7.2:-20250270	None:intergenic
CTGAATCCAATGTTGCAGAT+GGG	0.613616	7.2:+20250530	MS.gene41892:CDS
ACCCTTTGTTGTGAAACCGA+GGG	0.617169	7.2:+20250477	MS.gene41892:CDS
TCAGTTTCAAGAGTGCACGT+TGG	0.725975	7.2:+20250415	MS.gene41892:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AACAAGAATAATAAAAACAT+GGG	-	chr7.2:20250351-20250370	None:intergenic	15.0%
!!	TAACAAGAATAATAAAAACA+TGG	-	chr7.2:20250352-20250371	None:intergenic	15.0%
!	AATGTATTGTGGAGAAATTA+AGG	-	chr7.2:20250328-20250347	None:intergenic	25.0%
!!	ATAAAAATTGCATTTTCCCT+CGG	-	chr7.2:20250496-20250515	None:intergenic	25.0%
	AAAAACATGGGAATGTATTG+TGG	-	chr7.2:20250339-20250358	None:intergenic	30.0%
	AATTAAGGAAGAAGAAGTGA+CGG	-	chr7.2:20250313-20250332	None:intergenic	30.0%
	ACTCTTCAATTTCTTCATCT+TGG	-	chr7.2:20250737-20250756	None:intergenic	30.0%
	TGAAGCTTGATAAGAAGATA+AGG	+	chr7.2:20250650-20250669	MS.gene41892:CDS	30.0%
	TTCAATTTCTTCATCTTGGA+AGG	-	chr7.2:20250733-20250752	None:intergenic	30.0%
	TTGATAAGAAGATAAGGTTG+AGG	+	chr7.2:20250656-20250675	MS.gene41892:CDS	30.0%
!!	TCCTTTGGAATCAAAATTGA+AGG	+	chr7.2:20250603-20250622	MS.gene41892:CDS	30.0%
!!!	TCCTTCAATTTTGATTCCAA+AGG	-	chr7.2:20250607-20250626	None:intergenic	30.0%
	AAAATGGAGGAAGAAGAAAG+AGG	-	chr7.2:20250260-20250279	None:intergenic	35.0%
	AAAGAGGAAGTTGAGAAAGA+AGG	+	chr7.2:20250696-20250715	MS.gene41892:CDS	35.0%
	AAATGGAGGAAGAAGAAAGA+GGG	-	chr7.2:20250259-20250278	None:intergenic	35.0%
	AAGAGGAAGTTGAGAAAGAA+GGG	+	chr7.2:20250697-20250716	MS.gene41892:CDS	35.0%
	AATTTCTTCATCTTGGAAGG+TGG	-	chr7.2:20250730-20250749	None:intergenic	35.0%
	AGTTGAGAAAGAAGGGTAAT+TGG	+	chr7.2:20250704-20250723	MS.gene41892:CDS	35.0%
	GGAATCAAAATTGAAGGAGA+GGG	+	chr7.2:20250609-20250628	MS.gene41892:CDS	35.0%
	TGGAATCAAAATTGAAGGAG+AGG	+	chr7.2:20250608-20250627	MS.gene41892:CDS	35.0%
	TTCTGTAGATAAGCTTCCTT+TGG	+	chr7.2:20250588-20250607	MS.gene41892:CDS	35.0%
!	GAAAGAGACTTGTTCAAAAG+AGG	+	chr7.2:20250680-20250699	MS.gene41892:CDS	35.0%
	AAGAAGTGACGGTACTTACT+TGG	-	chr7.2:20250302-20250321	None:intergenic	40.0%
	AAGTCCCTTCAATGAGTTTG+TGG	-	chr7.2:20250446-20250465	None:intergenic	40.0%
	AATGGAGGAAGAAGAAAGAG+GGG	-	chr7.2:20250258-20250277	None:intergenic	40.0%
	ACTGAATCCAATGTTGCAGA+TGG	+	chr7.2:20250529-20250548	MS.gene41892:CDS	40.0%
	AGAAGTGACGGTACTTACTT+GGG	-	chr7.2:20250301-20250320	None:intergenic	40.0%
	AGTCCCTTCAATGAGTTTGT+GGG	-	chr7.2:20250445-20250464	None:intergenic	40.0%
	ATTGAAGGGACTTCGAATCT+CGG	+	chr7.2:20250453-20250472	MS.gene41892:CDS	40.0%
	CTGAATCCAATGTTGCAGAT+GGG	+	chr7.2:20250530-20250549	MS.gene41892:CDS	40.0%
	TTGCCCACAAACTCATTGAA+GGG	+	chr7.2:20250439-20250458	MS.gene41892:CDS	40.0%
	TTTGCCCACAAACTCATTGA+AGG	+	chr7.2:20250438-20250457	MS.gene41892:CDS	40.0%
	GAAGTGACGGTACTTACTTG+GGG	-	chr7.2:20250300-20250319	None:intergenic	45.0%
	TACTTACTTGGGGTTGTGGA+GGG	-	chr7.2:20250290-20250309	None:intergenic	45.0%
	TCCCTCGGTTTCACAACAAA+GGG	-	chr7.2:20250481-20250500	None:intergenic	45.0%
	TGTGGAGGGAATTGGGAAAA+TGG	-	chr7.2:20250276-20250295	None:intergenic	45.0%
	TTCAGACCCATCTGCAACAT+TGG	-	chr7.2:20250539-20250558	None:intergenic	45.0%
	TTCCCTCGGTTTCACAACAA+AGG	-	chr7.2:20250482-20250501	None:intergenic	45.0%
!	ACCCTTTGTTGTGAAACCGA+GGG	+	chr7.2:20250477-20250496	MS.gene41892:CDS	45.0%
!	TCAGTTTCAAGAGTGCACGT+TGG	+	chr7.2:20250415-20250434	MS.gene41892:intron	45.0%
	ACGGTACTTACTTGGGGTTG+TGG	-	chr7.2:20250294-20250313	None:intergenic	50.0%
	AGAAAGAGGGGTGAGTGTGA+TGG	-	chr7.2:20250246-20250265	None:intergenic	50.0%
	GGAGGGAATTGGGAAAATGG+AGG	-	chr7.2:20250273-20250292	None:intergenic	50.0%
	GTACTTACTTGGGGTTGTGG+AGG	-	chr7.2:20250291-20250310	None:intergenic	50.0%
	TTGGGGTTGTGGAGGGAATT+GGG	-	chr7.2:20250283-20250302	None:intergenic	50.0%
!	CACCCTTTGTTGTGAAACCG+AGG	+	chr7.2:20250476-20250495	MS.gene41892:CDS	50.0%
	CTTGGGGTTGTGGAGGGAAT+TGG	-	chr7.2:20250284-20250303	None:intergenic	55.0%
	TGAAGGAGAGGGAAGAGCAG+AGG	+	chr7.2:20250620-20250639	MS.gene41892:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	20250221	20250762	20250221	ID=MS.gene41892
chr7.2	mRNA	20250221	20250762	20250221	ID=MS.gene41892.t1;Parent=MS.gene41892
chr7.2	exon	20250221	20250302	20250221	ID=MS.gene41892.t1.exon1;Parent=MS.gene41892.t1
chr7.2	CDS	20250221	20250302	20250221	ID=cds.MS.gene41892.t1;Parent=MS.gene41892.t1
chr7.2	exon	20250419	20250762	20250419	ID=MS.gene41892.t1.exon2;Parent=MS.gene41892.t1
chr7.2	CDS	20250419	20250762	20250419	ID=cds.MS.gene41892.t1;Parent=MS.gene41892.t1

Gene Sequence

>MS.gene41892

ATGGCACTTCTCTGCTTCAATTCCATCACACTCACCCCTCTTTCTTCTTCCTCCATTTTCCCAATTCCCTCCACAACCCCAAGTAAGTACCGTCACTTCTTCTTCCTTAATTTCTCCACAATACATTCCCATGTTTTTATTATTCTTGTTATTGTTTCTTTTATCTTGATTCTCTCGAACTATGTTTTTGTTTATCAGTTTCAAGAGTGCACGTTGGTTTGCCCACAAACTCATTGAAGGGACTTCGAATCTCGGCACCCTTTGTTGTGAAACCGAGGGAAAATGCAATTTTTATTGCATCTGCTACTACTGAATCCAATGTTGCAGATGGGTCTGAAAGTGAAAGCAAGAAAGAGAGTGATGCTGTTTCTGTAGATAAGCTTCCTTTGGAATCAAAATTGAAGGAGAGGGAAGAGCAGAGGTTGAAGATGAAGCTTGATAAGAAGATAAGGTTGAGGAGAAAGAGACTTGTTCAAAAGAGGAAGTTGAGAAAGAAGGGTAATTGGCCACCTTCCAAGATGAAGAAATTGAAGAGTGTTTGA

Protein sequence

>MS.gene41892.t1

MALLCFNSITLTPLSSSSIFPIPSTTPISRVHVGLPTNSLKGLRISAPFVVKPRENAIFIASATTESNVADGSESESKKESDAVSVDKLPLESKLKEREEQRLKMKLDKKIRLRRKRLVQKRKLRKKGNWPPSKMKKLKSV