AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058787


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058787.t1 MTR_3g005290 97.321 112 3 0 1 112 129 240 5.66e-73 219
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058787.t1 AT4G24090 53.043 115 44 2 1 112 143 250 2.83e-27 102

Find 0 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TGAAAAGTGAAGAAGTTGAT+CGG - 24316:20625-20644 MS.gene058787:CDS 30.0%
ATATACCGTAAGGAGAAACT+TGG - 24316:20812-20831 MS.gene058787:CDS 35.0%
ATCATCCAAGTTTCTCCTTA+CGG + 24316:20820-20839 MS.gene058787:intergenic 35.0%
TTCGTATGTTGTGCATTGTT+TGG - 24316:20777-20796 MS.gene058787:CDS 35.0%
! GAAAAGTGAAGAAGTTGATC+GGG - 24316:20626-20645 MS.gene058787:CDS 35.0%
! TGACTTTTCGATATACCGTA+AGG - 24316:20802-20821 MS.gene058787:CDS 35.0%
ACGCTCTTTGTTGCTAAATG+CGG - 24316:20569-20588 MS.gene058787:CDS 40.0%
ATGATGCTCAGCTTAAGACT+GGG - 24316:20835-20854 MS.gene058787:CDS 40.0%
!!! GCAGCTTTTGGTGTTGTTAA+AGG - 24316:20864-20883 MS.gene058787:CDS 40.0%
AAGAACGAGGTGCATTCATG+GGG - 24316:20601-20620 MS.gene058787:CDS 45.0%
CGCTCTTTGTTGCTAAATGC+GGG - 24316:20570-20589 MS.gene058787:CDS 45.0%
GAAGAACGAGGTGCATTCAT+GGG - 24316:20600-20619 MS.gene058787:CDS 45.0%
GATGATGCTCAGCTTAAGAC+TGG - 24316:20834-20853 MS.gene058787:CDS 45.0%
GGATGAAGAGAGATTGGAGT+CGG - 24316:20647-20666 MS.gene058787:CDS 45.0%
TCTTTGTTGCTAAATGCGGG+AGG - 24316:20573-20592 MS.gene058787:CDS 45.0%
TGAAGAACGAGGTGCATTCA+TGG - 24316:20599-20618 MS.gene058787:CDS 45.0%
TGATCGGGATGAAGAGAGAT+TGG - 24316:20641-20660 MS.gene058787:CDS 45.0%
TGATGCTCAGCTTAAGACTG+GGG - 24316:20836-20855 MS.gene058787:CDS 45.0%
AACTCAGCTGCTTCTCTCTG+TGG - 24316:20746-20765 MS.gene058787:CDS 50.0%
ACAGAGAGAAGCAGCTGAGT+TGG + 24316:20747-20766 MS.gene058787:intergenic 50.0%
CAGAGAGAAGCAGCTGAGTT+GGG + 24316:20746-20765 MS.gene058787:intergenic 50.0%
CCCTTGTTGGCACTTTGTCA+GGG - 24316:20691-20710 MS.gene058787:CDS 50.0%
GCATCTATCTCTGCCCTTGT+TGG - 24316:20678-20697 MS.gene058787:CDS 50.0%
GTGGCCTGAGTGAAGCATAT+GGG + 24316:20720-20739 MS.gene058787:intergenic 50.0%
TGGCCTGAGTGAAGCATATG+GGG + 24316:20719-20738 MS.gene058787:intergenic 50.0%
! CCCTGACAAAGTGCCAACAA+GGG + 24316:20694-20713 MS.gene058787:intergenic 50.0%
GCCCTTGTTGGCACTTTGTC+AGG - 24316:20690-20709 MS.gene058787:CDS 55.0%
GCTCCCCATATGCTTCACTC+AGG - 24316:20713-20732 MS.gene058787:CDS 55.0%
GGTGGCCTGAGTGAAGCATA+TGG + 24316:20721-20740 MS.gene058787:intergenic 55.0%
! ACTGGGGTTGCAGCAGCTTT+TGG - 24316:20852-20871 MS.gene058787:CDS 55.0%
! GAGAAGCAGCTGAGTTGGGT+TGG + 24316:20742-20761 MS.gene058787:intergenic 55.0%
! GCCCTGACAAAGTGCCAACA+AGG + 24316:20695-20714 MS.gene058787:intergenic 55.0%
!! AAGCAGCTGAGTTGGGTTGG+TGG + 24316:20739-20758 MS.gene058787:intergenic 55.0%
!! GCGGGAGGTGCTGAAGAACG+AGG - 24316:20588-20607 MS.gene058787:CDS 65.0%


Chromosome Type Strat End Strand Name
24316 gene 20552 20908 20552 ID=MS.gene058787
24316 mRNA 20552 20908 20552 ID=MS.gene058787.t1;Parent=MS.gene058787
24316 exon 20552 20908 20552 ID=MS.gene058787.t1.exon1;Parent=MS.gene058787.t1
24316 CDS 20552 20908 20552 ID=cds.MS.gene058787.t1;Parent=MS.gene058787.t1
Gene Sequence

>MS.gene058787

ATGCTTGAGGAAGCAGAACGCTCTTTGTTGCTAAATGCGGGAGGTGCTGAAGAACGAGGTGCATTCATGGGGATGAAAAGTGAAGAAGTTGATCGGGATGAAGAGAGATTGGAGTCGGTAAAAGCAGCATCTATCTCTGCCCTTGTTGGCACTTTGTCAGGGCTCCCCATATGCTTCACTCAGGCCACCAACCCAACTCAGCTGCTTCTCTCTGTGGCAATCAATTTCGTATGTTGTGCATTGTTTGGAGTGACTTTTCGATATACCGTAAGGAGAAACTTGGATGATGCTCAGCTTAAGACTGGGGTTGCAGCAGCTTTTGGTGTTGTTAAAGGTAATCAACTCACTGTGCTCTAA

Protein sequence

>MS.gene058787.t1

MLEEAERSLLLNAGGAEERGAFMGMKSEEVDRDEERLESVKAASISALVGTLSGLPICFTQATNPTQLLLSVAINFVCCALFGVTFRYTVRRNLDDAQLKTGVAAAFGVVKGNQLTVL