Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42834.t1 | XP_003609733.1 | 86.5 | 325 | 39 | 2 | 1 | 321 | 1 | 324 | 1.10E-153 | 552.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42834.t1 | Q9ZVT7 | 62.0 | 326 | 111 | 5 | 1 | 321 | 3 | 320 | 7.8e-108 | 391.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42834.t1 | B7FL19 | 86.5 | 325 | 39 | 2 | 1 | 321 | 1 | 324 | 7.9e-154 | 552.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42834 | MS.gene025936 | PPI |
| MS.gene42834 | MS.gene001670 | PPI |
| MS.gene42834 | MS.gene53118 | PPI |
| MS.gene42834 | MS.gene78555 | PPI |
| MS.gene42834 | MS.gene050621 | PPI |
| MS.gene42834 | MS.gene072735 | PPI |
| MS.gene42834 | MS.gene55323 | PPI |
| MS.gene42834 | MS.gene024471 | PPI |
| MS.gene42834 | MS.gene21656 | PPI |
| MS.gene42834 | MS.gene024073 | PPI |
| MS.gene42834 | MS.gene22822 | PPI |
| MS.gene42834 | MS.gene22316 | PPI |
| MS.gene42834 | MS.gene024674 | PPI |
| MS.gene42834 | MS.gene85900 | PPI |
| MS.gene42834 | MS.gene033519 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42834.t1 | MTR_4g121550 | 86.462 | 325 | 39 | 2 | 1 | 321 | 1 | 324 | 0.0 | 580 |
| MS.gene42834.t1 | MTR_2g093790 | 77.950 | 322 | 24 | 5 | 1 | 322 | 1 | 275 | 1.44e-173 | 482 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42834.t1 | AT1G03360 | 62.080 | 327 | 109 | 6 | 1 | 321 | 3 | 320 | 2.99e-145 | 412 |
Find 55 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAGAGTATTGTCCACTTT+AGG | 0.290848 | 2.3:+7937790 | MS.gene42834:CDS |
| AAGGCTGGTGACATTGTTAT+AGG | 0.303613 | 2.3:+7934456 | MS.gene42834:CDS |
| TGGTTCCGAGTTCTGTGTTC+TGG | 0.316171 | 2.3:+7937891 | MS.gene42834:CDS |
| ATCTTCTATCATGTCATCTC+TGG | 0.353592 | 2.3:-7937644 | None:intergenic |
| ATGCGATCTTCATGGTTGAT+AGG | 0.364211 | 2.3:-7934315 | None:intergenic |
| AGACAAGTGAATACATTTGC+AGG | 0.378721 | 2.3:+7937755 | MS.gene42834:CDS |
| CCTTGAGTATGCGATCTTCA+TGG | 0.386160 | 2.3:-7934323 | None:intergenic |
| TTAAGACTTGTGGATTAGAT+TGG | 0.389862 | 2.3:-7937675 | None:intergenic |
| TATGGTATTGATTTAATACT+TGG | 0.403711 | 2.3:+7937583 | MS.gene42834:CDS |
| GATTTAATACTTGGCTGTAA+TGG | 0.406532 | 2.3:+7937592 | MS.gene42834:CDS |
| TTGGCTGTAATGGATTCATA+TGG | 0.413004 | 2.3:+7937602 | MS.gene42834:CDS |
| TATAACAATGTCACCAGCCT+TGG | 0.414901 | 2.3:-7934454 | None:intergenic |
| AAACCAACATTTCCATCATC+TGG | 0.418415 | 2.3:+7937555 | MS.gene42834:CDS |
| TGGTCAGAATCGTTGGAGAT+TGG | 0.435250 | 2.3:+7934585 | MS.gene42834:CDS |
| AGGCTGGTGACATTGTTATA+GGG | 0.439117 | 2.3:+7934457 | MS.gene42834:CDS |
| CGAGTGTAATAGAGATGAGA+GGG | 0.451668 | 2.3:+7934187 | None:intergenic |
| GTTGTATTGCAGCTTAGTAC+TGG | 0.459996 | 2.3:+7937493 | MS.gene42834:intron |
| TTCCATCATCTGGAGCAGTA+TGG | 0.460289 | 2.3:+7937565 | MS.gene42834:CDS |
| ATAACAATGTCACCAGCCTT+GGG | 0.467609 | 2.3:-7934453 | None:intergenic |
| TGCTACTCTCTGTGGTGTTG+TGG | 0.476983 | 2.3:+7934380 | MS.gene42834:CDS |
| GAATATGCCCGATGGTCTAC+AGG | 0.480017 | 2.3:+7934651 | MS.gene42834:CDS |
| ATCTTCTGATTCTTCTGTGA+CGG | 0.494275 | 2.3:+7934278 | MS.gene42834:CDS |
| TTTAACACTTGAAATCATCA+AGG | 0.502649 | 2.3:+7937819 | MS.gene42834:CDS |
| CAAAATACCTGTAGACCATC+GGG | 0.507180 | 2.3:-7934658 | None:intergenic |
| TACCATACTGCTCCAGATGA+TGG | 0.509092 | 2.3:-7937567 | None:intergenic |
| TGCGATCTTCATGGTTGATA+GGG | 0.513417 | 2.3:-7934314 | None:intergenic |
| CTGAAAATCACGAACTACTT+CGG | 0.517598 | 2.3:-7937144 | None:intergenic |
| TGTTAAAATGAATCCTAAAG+TGG | 0.518211 | 2.3:-7937803 | None:intergenic |
| TGTAGGTTGGTCAGAATCGT+TGG | 0.520122 | 2.3:+7934578 | MS.gene42834:intron |
| GCGAGTGTAATAGAGATGAG+AGG | 0.530276 | 2.3:+7934186 | None:intergenic |
| TCAAGATACAAACCCAAGGC+TGG | 0.533344 | 2.3:+7934441 | MS.gene42834:CDS |
| AGCAACCAGAACACAGAACT+CGG | 0.534819 | 2.3:-7937896 | None:intergenic |
| ATCTTCATGGTTGATAGGGA+TGG | 0.535963 | 2.3:-7934310 | None:intergenic |
| CTTGATATACACGACATGCT+TGG | 0.537424 | 2.3:+7937871 | MS.gene42834:CDS |
| CTTTCCATTGCTAGAGGCGA+AGG | 0.541185 | 2.3:+7936974 | MS.gene42834:intron |
| GCAAAATACCTGTAGACCAT+CGG | 0.552621 | 2.3:-7934659 | None:intergenic |
| TTAACACTTGAAATCATCAA+GGG | 0.558961 | 2.3:+7937820 | MS.gene42834:CDS |
| GTTCCAGTGCCTTCTGTAGA+CGG | 0.559019 | 2.3:-7934242 | None:intergenic |
| TTATTGGGAATTAAGACTTG+TGG | 0.572669 | 2.3:-7937685 | None:intergenic |
| TGGCTGTAATGGATTCATAT+GGG | 0.574523 | 2.3:+7937603 | MS.gene42834:CDS |
| TGTTATAGGGCGTGTCATTG+AGG | 0.575935 | 2.3:+7934470 | MS.gene42834:CDS |
| GCTCCAGATGATGGAAATGT+TGG | 0.581478 | 2.3:-7937558 | None:intergenic |
| CCATGAAGATCGCATACTCA+AGG | 0.585149 | 2.3:+7934323 | MS.gene42834:CDS |
| GATCCGTCTACAGAAGGCAC+TGG | 0.590591 | 2.3:+7934239 | MS.gene42834:CDS |
| TGTAATGGATTCATATGGGT+CGG | 0.597510 | 2.3:+7937607 | MS.gene42834:CDS |
| TCAGAAGATCCGTCTACAGA+AGG | 0.616298 | 2.3:+7934233 | MS.gene42834:CDS |
| GACAAGTGAATACATTTGCA+GGG | 0.619292 | 2.3:+7937756 | MS.gene42834:CDS |
| GATCGCATACTCAAGGGACA+TGG | 0.620688 | 2.3:+7934330 | MS.gene42834:CDS |
| CATGGAACCGCTGATATCAA+CGG | 0.620703 | 2.3:+7934348 | MS.gene42834:CDS |
| CATGAAGATCGCATACTCAA+GGG | 0.634598 | 2.3:+7934324 | MS.gene42834:CDS |
| TCTGCTATGAATATGCCCGA+TGG | 0.653631 | 2.3:+7934643 | MS.gene42834:CDS |
| AACTTCGCCGTTGATATCAG+CGG | 0.663408 | 2.3:-7934355 | None:intergenic |
| GAAGTTGTTGCTACTCTCTG+TGG | 0.664301 | 2.3:+7934372 | MS.gene42834:CDS |
| GCGCTCAAGATACAAACCCA+AGG | 0.676543 | 2.3:+7934437 | MS.gene42834:CDS |
| GTATATCAAGATTCACAGAG+AGG | 0.716369 | 2.3:-7937858 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTACTTACTTTTATTA+AGG | + | chr2.3:7937076-7937095 | MS.gene42834:intron | 10.0% |
| !! | AAAAAATAGTAAAAATCTCT+AGG | + | chr2.3:7935332-7935351 | MS.gene42834:intron | 15.0% |
| !! | AAATTAATAGATAAAGATGA+GGG | + | chr2.3:7935543-7935562 | MS.gene42834:intron | 15.0% |
| !! | TAAGTTATAAGAATCAAATA+TGG | + | chr2.3:7936563-7936582 | MS.gene42834:intron | 15.0% |
| !! | TCTAAATTATTAAGCTTAAT+TGG | - | chr2.3:7935740-7935759 | None:intergenic | 15.0% |
| !!! | AGAGATTTTTACTATTTTTT+CGG | - | chr2.3:7935332-7935351 | None:intergenic | 15.0% |
| !!! | GAAATAAGAAATTTTATAGT+AGG | + | chr2.3:7934843-7934862 | MS.gene42834:intron | 15.0% |
| !!! | TACTTTTATTAAGGAAATAA+TGG | + | chr2.3:7937085-7937104 | MS.gene42834:intron | 15.0% |
| !! | AAAACAAGAAATCTCTATAA+AGG | - | chr2.3:7934690-7934709 | None:intergenic | 20.0% |
| !! | AAACAAGAAATCTCTATAAA+GGG | - | chr2.3:7934689-7934708 | None:intergenic | 20.0% |
| !! | AAGAAATCAAATGTATGATA+TGG | - | chr2.3:7935716-7935735 | None:intergenic | 20.0% |
| !! | AATTTCAAGCTATTAGAATT+TGG | - | chr2.3:7936951-7936970 | None:intergenic | 20.0% |
| !! | ACTCAAATAATATTATGCTA+TGG | - | chr2.3:7935012-7935031 | None:intergenic | 20.0% |
| !! | ATAGCATAATATTATTTGAG+TGG | + | chr2.3:7935011-7935030 | MS.gene42834:intron | 20.0% |
| !! | ATTGATATCAACATTAACAT+CGG | - | chr2.3:7935227-7935246 | None:intergenic | 20.0% |
| !! | ATTTCAAGCTATTAGAATTT+GGG | - | chr2.3:7936950-7936969 | None:intergenic | 20.0% |
| !! | GAAATTAATAGATAAAGATG+AGG | + | chr2.3:7935542-7935561 | MS.gene42834:intron | 20.0% |
| !!! | TATGGTATTGATTTAATACT+TGG | + | chr2.3:7937583-7937602 | MS.gene42834:CDS | 20.0% |
| ! | AAGAAGTCAAAAATATGGAA+AGG | + | chr2.3:7937190-7937209 | MS.gene42834:CDS | 25.0% |
| ! | AGATCTTACAGAATCAAATA+TGG | - | chr2.3:7936015-7936034 | None:intergenic | 25.0% |
| ! | ATCAATAGTGTCATATCTTA+CGG | + | chr2.3:7935406-7935425 | MS.gene42834:intron | 25.0% |
| ! | ATTTCAATCAGCACATAAAT+AGG | + | chr2.3:7935629-7935648 | MS.gene42834:intron | 25.0% |
| ! | GAAGAAGAAAAAAAACAAGA+GGG | + | chr2.3:7936688-7936707 | MS.gene42834:intron | 25.0% |
| ! | GTTAATGTTGATATCAATGT+TGG | + | chr2.3:7935229-7935248 | MS.gene42834:intron | 25.0% |
| ! | TCTGATAGTAACTTTATGTA+TGG | + | chr2.3:7937377-7937396 | MS.gene42834:intron | 25.0% |
| ! | TGAAGTAGGTAAACTTATTT+AGG | + | chr2.3:7935489-7935508 | MS.gene42834:intron | 25.0% |
| ! | TGTTAAAATGAATCCTAAAG+TGG | - | chr2.3:7937806-7937825 | None:intergenic | 25.0% |
| ! | TTAACACTTGAAATCATCAA+GGG | + | chr2.3:7937820-7937839 | MS.gene42834:CDS | 25.0% |
| ! | TTCAAATCAAAAGCAGAAAA+CGG | - | chr2.3:7934520-7934539 | None:intergenic | 25.0% |
| ! | TTGATATCAACATTAACATC+GGG | - | chr2.3:7935226-7935245 | None:intergenic | 25.0% |
| ! | TTTAACACTTGAAATCATCA+AGG | + | chr2.3:7937819-7937838 | MS.gene42834:CDS | 25.0% |
| ! | TTTCAAGCTATTAGAATTTG+GGG | - | chr2.3:7936949-7936968 | None:intergenic | 25.0% |
| !! | AATGTATGTTTTCATGAAGT+AGG | + | chr2.3:7935475-7935494 | MS.gene42834:intron | 25.0% |
| !! | GTAACTTTGTACTACATTTT+GGG | + | chr2.3:7937409-7937428 | MS.gene42834:intron | 25.0% |
| !! | TCTTTTACTACTGTTACTAA+TGG | + | chr2.3:7937464-7937483 | MS.gene42834:intron | 25.0% |
| !! | TGATAACGTGTTTATAAAGT+GGG | + | chr2.3:7936874-7936893 | MS.gene42834:intron | 25.0% |
| !! | TGTAACTTTGTACTACATTT+TGG | + | chr2.3:7937408-7937427 | MS.gene42834:intron | 25.0% |
| !! | TTTTGTCTCTTCACTAAATA+CGG | - | chr2.3:7937538-7937557 | None:intergenic | 25.0% |
| !!! | ATAACCAAGTACCATTTTTA+GGG | - | chr2.3:7937277-7937296 | None:intergenic | 25.0% |
| !!! | CAAAGTTCTTTGGTTTTATA+GGG | + | chr2.3:7934725-7934744 | MS.gene42834:intron | 25.0% |
| !!! | CTTATTTTTTCCCCTAAAAA+TGG | + | chr2.3:7937263-7937282 | MS.gene42834:intron | 25.0% |
| !!! | TATAACCAAGTACCATTTTT+AGG | - | chr2.3:7937278-7937297 | None:intergenic | 25.0% |
| !!! | TATTGTTTTTTGTGTTGTGT+AGG | + | chr2.3:7934561-7934580 | MS.gene42834:intron | 25.0% |
| AAATATGGAAGATGCTGAAA+CGG | - | chr2.3:7936398-7936379 | None:intergenic | 30.0% | |
| AACTATGTCTACAATGATTG+TGG | + | chr2.3:7936721-7936740 | MS.gene42834:intron | 30.0% | |
| AATAATCCACGAAAAGTTAC+AGG | + | chr2.3:7934795-7934814 | MS.gene42834:intron | 30.0% | |
| AATCAGCACATAAATAGGTA+TGG | + | chr2.3:7935634-7935653 | MS.gene42834:intron | 30.0% | |
| ACAAAAGGTTGTTCATGTAT+CGG | - | chr2.3:7935292-7935311 | None:intergenic | 30.0% | |
| AGCTACAAAATTTGTATGCT+TGG | - | chr2.3:7937352-7937371 | None:intergenic | 30.0% | |
| AGTACTTTCAAAACTCAAGA+TGG | - | chr2.3:7935668-7935687 | None:intergenic | 30.0% | |
| ATAACGTGTTTATAAAGTGG+GGG | + | chr2.3:7936876-7936895 | MS.gene42834:intron | 30.0% | |
| ATAAGAATCAAATATGGACG+AGG | + | chr2.3:7936569-7936588 | MS.gene42834:intron | 30.0% | |
| ATAATCCACGAAAAGTTACA+GGG | + | chr2.3:7934796-7934815 | MS.gene42834:intron | 30.0% | |
| ATCATTGTAGACATAGTTGT+TGG | - | chr2.3:7936719-7936738 | None:intergenic | 30.0% | |
| ATGTTGATATCAATGTTGGT+AGG | + | chr2.3:7935233-7935252 | MS.gene42834:intron | 30.0% | |
| CAAGCAAGAAGTCAAAAATA+TGG | + | chr2.3:7937185-7937204 | MS.gene42834:CDS | 30.0% | |
| CACTTTATAAACACGTTATC+AGG | - | chr2.3:7936875-7936894 | None:intergenic | 30.0% | |
| GATAACGTGTTTATAAAGTG+GGG | + | chr2.3:7936875-7936894 | MS.gene42834:intron | 30.0% | |
| GATTTAATACTTGGCTGTAA+TGG | + | chr2.3:7937592-7937611 | MS.gene42834:CDS | 30.0% | |
| GGAAGAAGAAAAAAAACAAG+AGG | + | chr2.3:7936687-7936706 | MS.gene42834:intron | 30.0% | |
| GGTCTTACAAGAATCAAATA+TGG | + | chr2.3:7936430-7936449 | MS.gene42834:intron | 30.0% | |
| TAAATTATGTACATGTCCAC+AGG | + | chr2.3:7937121-7937140 | MS.gene42834:intron | 30.0% | |
| TATGTCTACAATGATTGTAG+CGG | - | chr2.3:7935792-7935811 | None:intergenic | 30.0% | |
| TATTTACACGTTGTATGTGT+TGG | + | chr2.3:7936347-7936366 | MS.gene42834:intron | 30.0% | |
| TGCCAATTGCAAAACAATTA+TGG | + | chr2.3:7935573-7935592 | MS.gene42834:intron | 30.0% | |
| TGTGGACATGTACATAATTT+AGG | - | chr2.3:7937122-7937141 | None:intergenic | 30.0% | |
| TTATGTTTCACAAGTGTAAG+AGG | + | chr2.3:7934876-7934895 | MS.gene42834:intron | 30.0% | |
| TTATTGGGAATTAAGACTTG+TGG | - | chr2.3:7937688-7937707 | None:intergenic | 30.0% | |
| ! | AAGACTGACAGAACTTTTAT+TGG | - | chr2.3:7937704-7937723 | None:intergenic | 30.0% |
| ! | AAGCAGTTCATAATGAGTTT+TGG | + | chr2.3:7935098-7935117 | MS.gene42834:intron | 30.0% |
| ! | AATCGAGAAAACTTTTCTGA+AGG | + | chr2.3:7936409-7936428 | MS.gene42834:intron | 30.0% |
| ! | AGACTGACAGAACTTTTATT+GGG | - | chr2.3:7937703-7937722 | None:intergenic | 30.0% |
| ! | CTGATAACGTGTTTATAAAG+TGG | + | chr2.3:7936873-7936892 | MS.gene42834:intron | 30.0% |
| ! | GAAATTTTATAGTAGGTGCT+AGG | + | chr2.3:7934850-7934869 | MS.gene42834:intron | 30.0% |
| ! | GCATACAAATTTTGTAGCTA+TGG | + | chr2.3:7937353-7937372 | MS.gene42834:intron | 30.0% |
| ! | TGTTGGTTGTGAAACAAATA+TGG | + | chr2.3:7936364-7936383 | MS.gene42834:intron | 30.0% |
| ! | TGTTGGTTGTGAAACAAATA+TGG | - | chr2.3:7936383-7936364 | None:intergenic | 30.0% |
| ! | TTGTTGTTACATTCTGTTCT+GGG | - | chr2.3:7936125-7936144 | None:intergenic | 30.0% |
| !! | AAATATGCGCTGTATTTTTG+AGG | + | chr2.3:7937014-7937033 | MS.gene42834:CDS | 30.0% |
| !! | GACCATAATTGTTTTGCAAT+TGG | - | chr2.3:7935578-7935597 | None:intergenic | 30.0% |
| !! | GCAAACTATTCTGTTTTTCT+TGG | - | chr2.3:7934910-7934929 | None:intergenic | 30.0% |
| !! | GTGCTGATTGAAATTTCAAA+AGG | - | chr2.3:7935623-7935642 | None:intergenic | 30.0% |
| !! | TAACCAAGTACCATTTTTAG+GGG | - | chr2.3:7937276-7937295 | None:intergenic | 30.0% |
| !! | TGTGTCAACATTTGATTTGA+TGG | + | chr2.3:7935447-7935466 | MS.gene42834:intron | 30.0% |
| !! | TTAAGACTTGTGGATTAGAT+TGG | - | chr2.3:7937678-7937697 | None:intergenic | 30.0% |
| !! | TTTGTTGTTACATTCTGTTC+TGG | - | chr2.3:7936126-7936145 | None:intergenic | 30.0% |
| !!! | ATGCTTTTTTTCTGCAATCT+GGG | + | chr2.3:7935361-7935380 | MS.gene42834:intron | 30.0% |
| !!! | ATTTTTGACTTCTTGCTTGA+AGG | - | chr2.3:7937184-7937203 | None:intergenic | 30.0% |
| !!! | GCAAAGTTCTTTGGTTTTAT+AGG | + | chr2.3:7934724-7934743 | MS.gene42834:intron | 30.0% |
| AAACCAACATTTCCATCATC+TGG | + | chr2.3:7937555-7937574 | MS.gene42834:CDS | 35.0% | |
| AATAGTGTCATATCTTACGG+AGG | + | chr2.3:7935409-7935428 | MS.gene42834:intron | 35.0% | |
| ACAAGAATCAAATATGGACG+AGG | + | chr2.3:7936436-7936455 | MS.gene42834:intron | 35.0% | |
| AGACAAGTGAATACATTTGC+AGG | + | chr2.3:7937755-7937774 | MS.gene42834:CDS | 35.0% | |
| AGAGAAAAACTATACTGCAC+TGG | + | chr2.3:7937732-7937751 | MS.gene42834:CDS | 35.0% | |
| ATCATCGTAGACATAGTTGT+TGG | - | chr2.3:7936649-7936668 | None:intergenic | 35.0% | |
| ATCTTCTATCATGTCATCTC+TGG | - | chr2.3:7937647-7937666 | None:intergenic | 35.0% | |
| ATCTTCTGATTCTTCTGTGA+CGG | + | chr2.3:7934278-7934297 | MS.gene42834:CDS | 35.0% | |
| ATGTAGTCAGCAAAGTTCTT+TGG | + | chr2.3:7934715-7934734 | MS.gene42834:intron | 35.0% | |
| ATTGTTCTTTCCATTGCTAG+AGG | + | chr2.3:7936968-7936987 | MS.gene42834:intron | 35.0% | |
| CTGAAAATCACGAACTACTT+CGG | - | chr2.3:7937147-7937166 | None:intergenic | 35.0% | |
| GACAAGTGAATACATTTGCA+GGG | + | chr2.3:7937756-7937775 | MS.gene42834:CDS | 35.0% | |
| GTAACAACAAATTCACAGCA+AGG | + | chr2.3:7936135-7936154 | MS.gene42834:intron | 35.0% | |
| GTATATCAAGATTCACAGAG+AGG | - | chr2.3:7937861-7937880 | None:intergenic | 35.0% | |
| TACAGAATCAAATATGGACG+AGG | - | chr2.3:7936009-7936028 | None:intergenic | 35.0% | |
| TGTTGTTACATTCTGTTCTG+GGG | - | chr2.3:7936124-7936143 | None:intergenic | 35.0% | |
| TTGCTCAATAGATCTTGGAT+AGG | - | chr2.3:7936778-7936797 | None:intergenic | 35.0% | |
| TTTCCCCTAAAAATGGTACT+TGG | + | chr2.3:7937270-7937289 | MS.gene42834:intron | 35.0% | |
| ! | AAGCTATTAGAATTTGGGGT+TGG | - | chr2.3:7936945-7936964 | None:intergenic | 35.0% |
| ! | AGCTATTAGAATTTGGGGTT+GGG | - | chr2.3:7936944-7936963 | None:intergenic | 35.0% |
| ! | ATTCGTAGTGAATCGATTCT+AGG | + | chr2.3:7935121-7935140 | MS.gene42834:intron | 35.0% |
| ! | GATACATGAACAACCTTTTG+TGG | + | chr2.3:7935291-7935310 | MS.gene42834:intron | 35.0% |
| ! | GATTGTGTCTTTTCTTCAAC+AGG | + | chr2.3:7936666-7936685 | MS.gene42834:intron | 35.0% |
| ! | TTCAATGCTTTTCTTCACCA+AGG | + | chr2.3:7935920-7935939 | MS.gene42834:intron | 35.0% |
| !! | GTTAGAGTATTGTCCACTTT+AGG | + | chr2.3:7937790-7937809 | MS.gene42834:CDS | 35.0% |
| !! | TGGCTGTAATGGATTCATAT+GGG | + | chr2.3:7937603-7937622 | MS.gene42834:CDS | 35.0% |
| !! | TGTAATGGATTCATATGGGT+CGG | + | chr2.3:7937607-7937626 | MS.gene42834:CDS | 35.0% |
| !! | TTGGCTGTAATGGATTCATA+TGG | + | chr2.3:7937602-7937621 | MS.gene42834:CDS | 35.0% |
| !! | TTTTTCAACCTTTGATTCGC+AGG | - | chr2.3:7936272-7936291 | None:intergenic | 35.0% |
| !!! | GAGTTTTGAAAGTACTCGAT+TGG | + | chr2.3:7935672-7935691 | MS.gene42834:intron | 35.0% |
| !!! | GATGCTTTTTTTCTGCAATC+TGG | + | chr2.3:7935360-7935379 | MS.gene42834:intron | 35.0% |
| !!! | GTTTTTTGTGTTGTGTAGGT+TGG | + | chr2.3:7934565-7934584 | MS.gene42834:intron | 35.0% |
| AAAGGTTGTTCATGTATCGG+AGG | - | chr2.3:7935289-7935308 | None:intergenic | 40.0% | |
| AAATCCCCAAAAAAGTCCCA+AGG | - | chr2.3:7935174-7935193 | None:intergenic | 40.0% | |
| AAGGCTGGTGACATTGTTAT+AGG | + | chr2.3:7934456-7934475 | MS.gene42834:CDS | 40.0% | |
| AAGGTTGCTTCTGATGAACT+CGG | - | chr2.3:7935975-7935994 | None:intergenic | 40.0% | |
| ACTTTGTACCTGCGAATCAA+AGG | + | chr2.3:7936261-7936280 | MS.gene42834:intron | 40.0% | |
| AGAGCATATGACCTAATAGC+AGG | - | chr2.3:7936801-7936820 | None:intergenic | 40.0% | |
| AGGCTGCAATTGTAGAAGAT+GGG | + | chr2.3:7935141-7935160 | MS.gene42834:intron | 40.0% | |
| AGGCTGGTGACATTGTTATA+GGG | + | chr2.3:7934457-7934476 | MS.gene42834:CDS | 40.0% | |
| ATAACAATGTCACCAGCCTT+GGG | - | chr2.3:7934456-7934475 | None:intergenic | 40.0% | |
| ATATTTCCAGCTGTAGGTGT+TGG | - | chr2.3:7936097-7936116 | None:intergenic | 40.0% | |
| ATGCGATCTTCATGGTTGAT+AGG | - | chr2.3:7934318-7934337 | None:intergenic | 40.0% | |
| ATGGAAGATGCTGAAACGAA+AGG | + | chr2.3:7936383-7936402 | MS.gene42834:intron | 40.0% | |
| CAAAATACCTGTAGACCATC+GGG | - | chr2.3:7934661-7934680 | None:intergenic | 40.0% | |
| CATGAAGATCGCATACTCAA+GGG | + | chr2.3:7934324-7934343 | MS.gene42834:CDS | 40.0% | |
| CCAGTATGAGACAGTACAAA+TGG | + | chr2.3:7937306-7937325 | MS.gene42834:intron | 40.0% | |
| CCATTTGTACTGTCTCATAC+TGG | - | chr2.3:7937309-7937328 | None:intergenic | 40.0% | |
| CCTTACAAAGTATGCTGGTA+AGG | - | chr2.3:7936911-7936930 | None:intergenic | 40.0% | |
| CCTTACCAGCATACTTTGTA+AGG | + | chr2.3:7936908-7936927 | MS.gene42834:intron | 40.0% | |
| CTATTGAGCAACCTGCTATT+AGG | + | chr2.3:7936787-7936806 | MS.gene42834:intron | 40.0% | |
| CTCAACCTTACAAAGTATGC+TGG | - | chr2.3:7936916-7936935 | None:intergenic | 40.0% | |
| CTTGATATACACGACATGCT+TGG | + | chr2.3:7937871-7937890 | MS.gene42834:CDS | 40.0% | |
| GCAAAATACCTGTAGACCAT+CGG | - | chr2.3:7934662-7934681 | None:intergenic | 40.0% | |
| GCAGCAACAAGAACAACAAA+AGG | - | chr2.3:7935883-7935902 | None:intergenic | 40.0% | |
| GGTACGATGTAACGACATTA+AGG | + | chr2.3:7936186-7936205 | MS.gene42834:intron | 40.0% | |
| GTCTCACGTTGGATAAGATA+TGG | + | chr2.3:7936849-7936868 | MS.gene42834:intron | 40.0% | |
| GTTGTATTGCAGCTTAGTAC+TGG | + | chr2.3:7937493-7937512 | MS.gene42834:intron | 40.0% | |
| GTTGTTACATTCTGTTCTGG+GGG | - | chr2.3:7936123-7936142 | None:intergenic | 40.0% | |
| TAGGCTGCAATTGTAGAAGA+TGG | + | chr2.3:7935140-7935159 | MS.gene42834:intron | 40.0% | |
| TATAACAATGTCACCAGCCT+TGG | - | chr2.3:7934457-7934476 | None:intergenic | 40.0% | |
| TGTATGCTTGGATCACAAAC+AGG | - | chr2.3:7937340-7937359 | None:intergenic | 40.0% | |
| TTATTGCAAGCTTGGCATCA+AGG | + | chr2.3:7936752-7936771 | MS.gene42834:intron | 40.0% | |
| TTGAAACCGTGACAAAGTGA+CGG | - | chr2.3:7936223-7936242 | None:intergenic | 40.0% | |
| TTGCTGAAAAAGAGGCAGAA+AGG | + | chr2.3:7937914-7937933 | MS.gene42834:CDS | 40.0% | |
| ! | AAAGACCCTGTAACTTTTCG+TGG | - | chr2.3:7934804-7934823 | None:intergenic | 40.0% |
| ! | AAGTAGCCTTACAACGAACT+CGG | + | chr2.3:7936479-7936498 | MS.gene42834:intron | 40.0% |
| ! | GTTCGTGATTTTCAGCATGA+TGG | + | chr2.3:7937152-7937171 | MS.gene42834:CDS | 40.0% |
| ! | TGCGATCTTCATGGTTGATA+GGG | - | chr2.3:7934317-7934336 | None:intergenic | 40.0% |
| ! | TGTGCACTTCGTTCAGTTTT+GGG | + | chr2.3:7936318-7936337 | MS.gene42834:intron | 40.0% |
| ! | TGTTCTGGTTGCTGAAAAAG+AGG | + | chr2.3:7937906-7937925 | MS.gene42834:CDS | 40.0% |
| ! | TTGTGCACTTCGTTCAGTTT+TGG | + | chr2.3:7936317-7936336 | MS.gene42834:intron | 40.0% |
| !! | ATCTTCATGGTTGATAGGGA+TGG | - | chr2.3:7934313-7934332 | None:intergenic | 40.0% |
| !! | CAGTCTTGTTATTGCAAGCT+TGG | + | chr2.3:7936744-7936763 | MS.gene42834:intron | 40.0% |
| !! | TATGCGCTGTATTTTTGAGG+AGG | + | chr2.3:7937017-7937036 | MS.gene42834:CDS | 40.0% |
| !! | TTGGGAAGCTTTTAGTTGCA+GGG | + | chr2.3:7935193-7935212 | MS.gene42834:intron | 40.0% |
| !! | TTTGGGAAGCTTTTAGTTGC+AGG | + | chr2.3:7935192-7935211 | MS.gene42834:intron | 40.0% |
| !!! | GGGACTTTTTTGGGGATTTT+GGG | + | chr2.3:7935175-7935194 | MS.gene42834:intron | 40.0% |
| !!! | TGGGACTTTTTTGGGGATTT+TGG | + | chr2.3:7935174-7935193 | MS.gene42834:intron | 40.0% |
| AAAGCCATGGTGAAGCAAAC+AGG | + | chr2.3:7936518-7936537 | MS.gene42834:intron | 45.0% | |
| AACTTCGCCGTTGATATCAG+CGG | - | chr2.3:7934358-7934377 | None:intergenic | 45.0% | |
| AAGCCATGGTGAAGCAAACA+GGG | + | chr2.3:7936519-7936538 | MS.gene42834:intron | 45.0% | |
| ACATCGTACCTGTGAATCAG+AGG | - | chr2.3:7936176-7936195 | None:intergenic | 45.0% | |
| AGCAACCAGAACACAGAACT+CGG | - | chr2.3:7937899-7937918 | None:intergenic | 45.0% | |
| ATCATGCGCATCACCACAAA+AGG | - | chr2.3:7935307-7935326 | None:intergenic | 45.0% | |
| ATGGAAGATGCTGAAACGGA+AGG | - | chr2.3:7936061-7936080 | None:intergenic | 45.0% | |
| CAAAGTATGCTGGTAAGGTG+AGG | - | chr2.3:7936906-7936925 | None:intergenic | 45.0% | |
| CATGGAACCGCTGATATCAA+CGG | + | chr2.3:7934348-7934367 | MS.gene42834:CDS | 45.0% | |
| CCATGAAGATCGCATACTCA+AGG | + | chr2.3:7934323-7934342 | MS.gene42834:CDS | 45.0% | |
| CCTTGAGTATGCGATCTTCA+TGG | - | chr2.3:7934326-7934345 | None:intergenic | 45.0% | |
| GAAGTTGTTGCTACTCTCTG+TGG | + | chr2.3:7934372-7934391 | MS.gene42834:CDS | 45.0% | |
| GAGTTCATCAGAAGCAACCT+TGG | + | chr2.3:7935974-7935993 | MS.gene42834:intron | 45.0% | |
| GCAGGTTGCTCAATAGATCT+TGG | - | chr2.3:7936783-7936802 | None:intergenic | 45.0% | |
| GTCATATCTTACGGAGGCTA+GGG | + | chr2.3:7935415-7935434 | MS.gene42834:intron | 45.0% | |
| TACCATACTGCTCCAGATGA+TGG | - | chr2.3:7937570-7937589 | None:intergenic | 45.0% | |
| TCAAGATACAAACCCAAGGC+TGG | + | chr2.3:7934441-7934460 | MS.gene42834:CDS | 45.0% | |
| TCAGAAGATCCGTCTACAGA+AGG | + | chr2.3:7934233-7934252 | MS.gene42834:CDS | 45.0% | |
| TCATATCTTACGGAGGCTAG+GGG | + | chr2.3:7935416-7935435 | MS.gene42834:intron | 45.0% | |
| TCTGCTATGAATATGCCCGA+TGG | + | chr2.3:7934643-7934662 | MS.gene42834:CDS | 45.0% | |
| TCTTCAACAGCAGCTCAAAC+AGG | - | chr2.3:7935844-7935863 | None:intergenic | 45.0% | |
| TGAAACGGAAGGAAGAATCG+AGG | - | chr2.3:7936050-7936069 | None:intergenic | 45.0% | |
| TGGTCAGAATCGTTGGAGAT+TGG | + | chr2.3:7934585-7934604 | MS.gene42834:CDS | 45.0% | |
| TGTCATATCTTACGGAGGCT+AGG | + | chr2.3:7935414-7935433 | MS.gene42834:intron | 45.0% | |
| TGTGTTGAAGAGTCTCACGT+TGG | + | chr2.3:7936838-7936857 | MS.gene42834:intron | 45.0% | |
| TTTCCCTGTTTGCTTCACCA+TGG | - | chr2.3:7936525-7936544 | None:intergenic | 45.0% | |
| TTTCTGCACCTCTGATTCAC+AGG | + | chr2.3:7936165-7936184 | MS.gene42834:intron | 45.0% | |
| ! | AGTAGCCTTACAACGAACTC+GGG | + | chr2.3:7936480-7936499 | MS.gene42834:intron | 45.0% |
| ! | CTGAAACCGTCACTTTGTCA+CGG | + | chr2.3:7936214-7936233 | MS.gene42834:intron | 45.0% |
| ! | CTGGGACTGATTGGGTTTTT+GGG | + | chr2.3:7935379-7935398 | MS.gene42834:intron | 45.0% |
| ! | GTAAGGCTACTTTCGAACCT+TGG | - | chr2.3:7936471-7936490 | None:intergenic | 45.0% |
| ! | GTGCACTTCGTTCAGTTTTG+GGG | + | chr2.3:7936319-7936338 | MS.gene42834:intron | 45.0% |
| ! | TCTGCAATCTGGGACTGATT+GGG | + | chr2.3:7935371-7935390 | MS.gene42834:intron | 45.0% |
| ! | TGGGACTGATTGGGTTTTTG+GGG | + | chr2.3:7935380-7935399 | MS.gene42834:intron | 45.0% |
| ! | TGTTATAGGGCGTGTCATTG+AGG | + | chr2.3:7934470-7934489 | MS.gene42834:CDS | 45.0% |
| ! | TTCCATCATCTGGAGCAGTA+TGG | + | chr2.3:7937565-7937584 | MS.gene42834:CDS | 45.0% |
| ! | TTCTGCAATCTGGGACTGAT+TGG | + | chr2.3:7935370-7935389 | MS.gene42834:intron | 45.0% |
| !! | CTTTGAAGTGAGGCTGAGAT+AGG | + | chr2.3:7935943-7935962 | MS.gene42834:intron | 45.0% |
| !! | GCTCCAGATGATGGAAATGT+TGG | - | chr2.3:7937561-7937580 | None:intergenic | 45.0% |
| !! | TCTGGGACTGATTGGGTTTT+TGG | + | chr2.3:7935378-7935397 | MS.gene42834:intron | 45.0% |
| !! | TGTAGGTTGGTCAGAATCGT+TGG | + | chr2.3:7934578-7934597 | MS.gene42834:intron | 45.0% |
| !! | TTCACCAAGGCTTTGAAGTG+AGG | + | chr2.3:7935933-7935952 | MS.gene42834:intron | 45.0% |
| !! | TTCACCATGGCTTTGAAGTG+AGG | - | chr2.3:7936512-7936531 | None:intergenic | 45.0% |
| !!! | ACAGTGCCTTGGGACTTTTT+TGG | + | chr2.3:7935165-7935184 | MS.gene42834:intron | 45.0% |
| !!! | AGTGCCTTGGGACTTTTTTG+GGG | + | chr2.3:7935167-7935186 | MS.gene42834:intron | 45.0% |
| !!! | CAGTGCCTTGGGACTTTTTT+GGG | + | chr2.3:7935166-7935185 | MS.gene42834:intron | 45.0% |
| AGAAGATGGGAACAGTGCCT+TGG | + | chr2.3:7935154-7935173 | MS.gene42834:intron | 50.0% | |
| AGGATCGCGAGTTACCTTGT+GGG | + | chr2.3:7935253-7935272 | MS.gene42834:intron | 50.0% | |
| AGTGAGGCTGAGATAGGTTG+AGG | + | chr2.3:7935949-7935968 | MS.gene42834:intron | 50.0% | |
| CAACAGCAGCTCAAACAGGA+GGG | - | chr2.3:7935840-7935859 | None:intergenic | 50.0% | |
| CTTTCCATTGCTAGAGGCGA+AGG | + | chr2.3:7936974-7936993 | MS.gene42834:intron | 50.0% | |
| GAAGATGGGAACAGTGCCTT+GGG | + | chr2.3:7935155-7935174 | MS.gene42834:intron | 50.0% | |
| GAATATGCCCGATGGTCTAC+AGG | + | chr2.3:7934651-7934670 | MS.gene42834:CDS | 50.0% | |
| GAGGATCAAGCAATCCCACA+AGG | - | chr2.3:7935270-7935289 | None:intergenic | 50.0% | |
| GATCGCATACTCAAGGGACA+TGG | + | chr2.3:7934330-7934349 | MS.gene42834:CDS | 50.0% | |
| GCGCTCAAGATACAAACCCA+AGG | + | chr2.3:7934437-7934456 | MS.gene42834:CDS | 50.0% | |
| GGGTGCATATTTCCAGCTGT+AGG | - | chr2.3:7936103-7936122 | None:intergenic | 50.0% | |
| GTTCCAGTGCCTTCTGTAGA+CGG | - | chr2.3:7934245-7934264 | None:intergenic | 50.0% | |
| TAGGATCGCGAGTTACCTTG+TGG | + | chr2.3:7935252-7935271 | MS.gene42834:intron | 50.0% | |
| TCAACAGCAGCTCAAACAGG+AGG | - | chr2.3:7935841-7935860 | None:intergenic | 50.0% | |
| TCACAACCAACACCTACAGC+TGG | + | chr2.3:7936088-7936107 | MS.gene42834:intron | 50.0% | |
| TCAGCCTCACTTCAAAGCCA+TGG | + | chr2.3:7936505-7936524 | MS.gene42834:intron | 50.0% | |
| TCAGCCTCACTTCAAAGCCT+TGG | - | chr2.3:7935940-7935959 | None:intergenic | 50.0% | |
| TGAGACTCTTCAACACACGC+AGG | - | chr2.3:7936835-7936854 | None:intergenic | 50.0% | |
| TGGTTCCGAGTTCTGTGTTC+TGG | + | chr2.3:7937891-7937910 | MS.gene42834:CDS | 50.0% | |
| ! | TGCTACTCTCTGTGGTGTTG+TGG | + | chr2.3:7934380-7934399 | MS.gene42834:CDS | 50.0% |
| !! | ATGGCTTTGAAGTGAGGCTG+AGG | - | chr2.3:7936506-7936525 | None:intergenic | 50.0% |
| !! | GGACTGATTGGGTTTTTGGG+GGG | + | chr2.3:7935382-7935401 | MS.gene42834:intron | 50.0% |
| !! | GGGACTGATTGGGTTTTTGG+GGG | + | chr2.3:7935381-7935400 | MS.gene42834:intron | 50.0% |
| CTCTTCAACACACGCAGGAC+TGG | - | chr2.3:7936830-7936849 | None:intergenic | 55.0% | |
| CTGTCCTTCGCCTCTAGCAA+TGG | - | chr2.3:7936981-7937000 | None:intergenic | 55.0% | |
| GGACGAGGCTACAGAATCCA+AGG | + | chr2.3:7936451-7936470 | MS.gene42834:intron | 55.0% | |
| GGACGAGGCTACATGATCCA+AGG | - | chr2.3:7935994-7936013 | None:intergenic | 55.0% | |
| TCACGAACTACTTCGGCCTG+TGG | - | chr2.3:7937140-7937159 | None:intergenic | 55.0% | |
| TGAGGCCCGAGTTCGTTGTA+AGG | - | chr2.3:7936488-7936507 | None:intergenic | 55.0% | |
| ! | GATCCGTCTACAGAAGGCAC+TGG | + | chr2.3:7934239-7934258 | MS.gene42834:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 7934201 | 7937960 | 7934201 | ID=MS.gene42834 |
| chr2.3 | mRNA | 7934201 | 7937960 | 7934201 | ID=MS.gene42834.t1;Parent=MS.gene42834 |
| chr2.3 | exon | 7934201 | 7934491 | 7934201 | ID=MS.gene42834.t1.exon1;Parent=MS.gene42834.t1 |
| chr2.3 | CDS | 7934201 | 7934491 | 7934201 | ID=cds.MS.gene42834.t1;Parent=MS.gene42834.t1 |
| chr2.3 | exon | 7934583 | 7934672 | 7934583 | ID=MS.gene42834.t1.exon2;Parent=MS.gene42834.t1 |
| chr2.3 | CDS | 7934583 | 7934672 | 7934583 | ID=cds.MS.gene42834.t1;Parent=MS.gene42834.t1 |
| chr2.3 | exon | 7936988 | 7937053 | 7936988 | ID=MS.gene42834.t1.exon3;Parent=MS.gene42834.t1 |
| chr2.3 | CDS | 7936988 | 7937053 | 7936988 | ID=cds.MS.gene42834.t1;Parent=MS.gene42834.t1 |
| chr2.3 | exon | 7937143 | 7937211 | 7937143 | ID=MS.gene42834.t1.exon4;Parent=MS.gene42834.t1 |
| chr2.3 | CDS | 7937143 | 7937211 | 7937143 | ID=cds.MS.gene42834.t1;Parent=MS.gene42834.t1 |
| chr2.3 | exon | 7937505 | 7937960 | 7937505 | ID=MS.gene42834.t1.exon5;Parent=MS.gene42834.t1 |
| chr2.3 | CDS | 7937505 | 7937960 | 7937505 | ID=cds.MS.gene42834.t1;Parent=MS.gene42834.t1 |
| Gene Sequence |
| Protein sequence |
