Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43109.t1 | XP_003621757.1 | 98.9 | 277 | 3 | 0 | 1 | 277 | 26 | 302 | 5.90E-154 | 553.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43109.t1 | Q8LJW3 | 58.1 | 279 | 113 | 3 | 1 | 277 | 23 | 299 | 6.9e-87 | 322.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43109.t1 | G7KUS8 | 98.9 | 277 | 3 | 0 | 1 | 277 | 26 | 302 | 4.2e-154 | 553.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049293 | MS.gene43109 | -0.803924 | 2.76E-49 | -1.69E-46 |
MS.gene049378 | MS.gene43109 | 0.823624 | 1.25E-53 | -1.69E-46 |
MS.gene049669 | MS.gene43109 | 0.819033 | 1.44E-52 | -1.69E-46 |
MS.gene050226 | MS.gene43109 | 0.800396 | 1.47E-48 | -1.69E-46 |
MS.gene050227 | MS.gene43109 | 0.813052 | 3.11E-51 | -1.69E-46 |
MS.gene050228 | MS.gene43109 | 0.809563 | 1.78E-50 | -1.69E-46 |
MS.gene050442 | MS.gene43109 | 0.802648 | 5.08E-49 | -1.69E-46 |
MS.gene052176 | MS.gene43109 | 0.80725 | 5.54E-50 | -1.69E-46 |
MS.gene052302 | MS.gene43109 | 0.81494 | 1.19E-51 | -1.69E-46 |
MS.gene052376 | MS.gene43109 | 0.831161 | 1.95E-55 | -1.69E-46 |
MS.gene052389 | MS.gene43109 | 0.802029 | 6.81E-49 | -1.69E-46 |
MS.gene052586 | MS.gene43109 | 0.835504 | 1.61E-56 | -1.69E-46 |
MS.gene052856 | MS.gene43109 | 0.802936 | 4.43E-49 | -1.69E-46 |
MS.gene052858 | MS.gene43109 | 0.811626 | 6.37E-51 | -1.69E-46 |
MS.gene052860 | MS.gene43109 | 0.808603 | 2.86E-50 | -1.69E-46 |
MS.gene054468 | MS.gene43109 | 0.806971 | 6.35E-50 | -1.69E-46 |
MS.gene054942 | MS.gene43109 | 0.801052 | 1.08E-48 | -1.69E-46 |
MS.gene055701 | MS.gene43109 | 0.802705 | 4.94E-49 | -1.69E-46 |
MS.gene057555 | MS.gene43109 | 0.800075 | 1.71E-48 | -1.69E-46 |
MS.gene057869 | MS.gene43109 | 0.806204 | 9.22E-50 | -1.69E-46 |
MS.gene058435 | MS.gene43109 | 0.814359 | 1.60E-51 | -1.69E-46 |
MS.gene05954 | MS.gene43109 | 0.808852 | 2.53E-50 | -1.69E-46 |
MS.gene060879 | MS.gene43109 | 0.850121 | 2.08E-60 | -1.69E-46 |
MS.gene060998 | MS.gene43109 | 0.82156 | 3.78E-53 | -1.69E-46 |
MS.gene061040 | MS.gene43109 | -0.812793 | 3.55E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 50 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCTGATGGTGGATGGTTTA+TGG | 0.205537 | 7.2:-77188751 | MS.gene43109:CDS |
TTTCATGTTACTGATCAAAA+TGG | 0.211096 | 7.2:-77188574 | MS.gene43109:CDS |
CAGAACAACAACTTTGATAA+AGG | 0.291767 | 7.2:-77188961 | MS.gene43109:intron |
GTCATTCATGTTCTTGCAAT+TGG | 0.312088 | 7.2:-77187324 | MS.gene43109:CDS |
CCGCTACCACATTGCATTTG+AGG | 0.353645 | 7.2:+77187791 | None:intergenic |
GTTGATGATTGCATCGATAA+AGG | 0.360000 | 7.2:-77187481 | MS.gene43109:CDS |
AATAGTAACTTCGGTCGATC+TGG | 0.375903 | 7.2:+77187433 | None:intergenic |
CATACAACGATCGAGTTAAC+AGG | 0.410366 | 7.2:-77187862 | MS.gene43109:CDS |
TGAAGGAACAGAAGCATATC+AGG | 0.414309 | 7.2:-77187350 | MS.gene43109:CDS |
AAGACTTCTGAAAGCAATCC+TGG | 0.415942 | 7.2:+77187829 | None:intergenic |
TCGAGTTAACAGGACGAGAT+AGG | 0.422142 | 7.2:-77187852 | MS.gene43109:CDS |
ATGTGGTAGCGGCTGAAGTC+TGG | 0.426365 | 7.2:-77187780 | MS.gene43109:CDS |
TTCATGTTACTGATCAAAAT+GGG | 0.434204 | 7.2:-77188573 | MS.gene43109:CDS |
TACATCACCGACGACACAAC+AGG | 0.443441 | 7.2:-77187727 | MS.gene43109:CDS |
TTAATCTTGGCAAGGCGGTC+AGG | 0.450576 | 7.2:+77187688 | None:intergenic |
GATCGGAAGCTACGGACTCT+TGG | 0.452011 | 7.2:+77187922 | None:intergenic |
TGTAGCTGATAGAATTCAAC+AGG | 0.458713 | 7.2:-77188530 | MS.gene43109:intron |
TCAATTGATGTATGCTGATC+GGG | 0.471630 | 7.2:-77187569 | MS.gene43109:CDS |
CGGGATTATGACATATATGA+TGG | 0.473270 | 7.2:-77187550 | MS.gene43109:CDS |
AAGCAGAAGATGCTTAATCT+TGG | 0.477322 | 7.2:+77187675 | None:intergenic |
ATATTTCATCTGATGGTGGA+TGG | 0.481369 | 7.2:-77188758 | MS.gene43109:CDS |
TAATAAACGTGGTAGTTTGT+TGG | 0.488332 | 7.2:-77188829 | MS.gene43109:CDS |
AGAGCTTATATTTCATCTGA+TGG | 0.514352 | 7.2:-77188765 | MS.gene43109:CDS |
TTTGTTCGACTCACAAGGAT+AGG | 0.516487 | 7.2:-77187600 | MS.gene43109:CDS |
GATATACCGTCGTGAATTTG+AGG | 0.531940 | 7.2:-77187459 | MS.gene43109:CDS |
CGGCAATCCTGTTGTGTCGT+CGG | 0.534641 | 7.2:+77187720 | None:intergenic |
TTCTCACGGATCGGAAGCTA+CGG | 0.542549 | 7.2:+77187914 | None:intergenic |
CTTCAGCATTGACAGTTCCA+TGG | 0.546213 | 7.2:+77187368 | None:intergenic |
CCTCAAATGCAATGTGGTAG+CGG | 0.554458 | 7.2:-77187791 | MS.gene43109:CDS |
CTGGACACACAATTCAAGAA+TGG | 0.562636 | 7.2:-77187761 | MS.gene43109:CDS |
GTTCGACTCACAAGGATAGG+AGG | 0.577855 | 7.2:-77187597 | MS.gene43109:CDS |
ATCAATTGATGTATGCTGAT+CGG | 0.588153 | 7.2:-77187570 | MS.gene43109:CDS |
ATCTGTCGGTGTTCAAGCTG+CGG | 0.596760 | 7.2:-77187890 | MS.gene43109:CDS |
TTAACAGGACGAGATAGGCC+AGG | 0.610170 | 7.2:-77187847 | MS.gene43109:CDS |
CATGGAACTGTCAATGCTGA+AGG | 0.610676 | 7.2:-77187367 | MS.gene43109:CDS |
CGACAGATCTTCTCACGGAT+CGG | 0.618439 | 7.2:+77187905 | None:intergenic |
GCTTATATTTCATCTGATGG+TGG | 0.619057 | 7.2:-77188762 | MS.gene43109:CDS |
AGGCGGTCAGGATTGTCGAT+CGG | 0.626180 | 7.2:+77187700 | None:intergenic |
GATGGTGGATGGTTTATGGA+TGG | 0.634152 | 7.2:-77188747 | MS.gene43109:intron |
GAAGATGCTTAATCTTGGCA+AGG | 0.637572 | 7.2:+77187680 | None:intergenic |
AACACCGACAGATCTTCTCA+CGG | 0.646279 | 7.2:+77187900 | None:intergenic |
CGATCCGTGAGAAGATCTGT+CGG | 0.650412 | 7.2:-77187904 | MS.gene43109:CDS |
ACGGTATCGAATAGTAACTT+CGG | 0.652560 | 7.2:+77187424 | None:intergenic |
CATGTCTGTGATAGTACACA+CGG | 0.656721 | 7.2:+77187405 | None:intergenic |
CTTCTGCTTTATGTGCTGAG+AGG | 0.660385 | 7.2:-77187661 | MS.gene43109:CDS |
ATGCAGTATGTTGTGTACCA+TGG | 0.674170 | 7.2:-77187385 | MS.gene43109:CDS |
GATGCTTAATCTTGGCAAGG+CGG | 0.685591 | 7.2:+77187683 | None:intergenic |
GTTGATAGTGCTAATAAACG+TGG | 0.727553 | 7.2:-77188840 | MS.gene43109:CDS |
TGCTGACCTCAAATGCAATG+TGG | 0.737650 | 7.2:-77187797 | MS.gene43109:CDS |
TGGACACCTCAAATTCACGA+CGG | 0.751563 | 7.2:+77187453 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTGATATTTTCTTATTTTAT+CGG | - | chr7.2:77187862-77187881 | MS.gene43109:CDS | 10.0% |
!! | AAATGAAGAATTATTGTAAA+TGG | + | chr7.2:77187565-77187584 | None:intergenic | 15.0% |
!!! | ATTTGTTATGATTGTAATTT+AGG | - | chr7.2:77187812-77187831 | MS.gene43109:CDS | 15.0% |
!!! | TTTGAAATTTAAACCTTATA+AGG | - | chr7.2:77187335-77187354 | MS.gene43109:CDS | 15.0% |
!! | AATCTTTGATGAATTTCAAA+AGG | - | chr7.2:77187362-77187381 | MS.gene43109:CDS | 20.0% |
!! | ATCTTTGATGAATTTCAAAA+GGG | - | chr7.2:77187363-77187382 | MS.gene43109:CDS | 20.0% |
!! | TAGAGTAATATAAACTATCA+TGG | + | chr7.2:77188053-77188072 | None:intergenic | 20.0% |
!! | TCAAAGATTATAACCTTATA+AGG | + | chr7.2:77187351-77187370 | None:intergenic | 20.0% |
!!! | CTTTTATATTGTGGTAAAAT+CGG | + | chr7.2:77188013-77188032 | None:intergenic | 20.0% |
!!! | TCAATTTTCATCATACTATT+TGG | - | chr7.2:77188100-77188119 | MS.gene43109:intron | 20.0% |
!!! | TGTTTACTAATAACACTTTT+TGG | - | chr7.2:77188305-77188324 | MS.gene43109:intron | 20.0% |
! | GAAGAATTATTGTAAATGGT+AGG | + | chr7.2:77187561-77187580 | None:intergenic | 25.0% |
! | GTTATTAGTAAACAAAGTTC+TGG | + | chr7.2:77188299-77188318 | None:intergenic | 25.0% |
! | TAGATCTGTGTAATATTCAT+CGG | - | chr7.2:77187769-77187788 | MS.gene43109:CDS | 25.0% |
! | TTCATGTTACTGATCAAAAT+GGG | - | chr7.2:77187700-77187719 | MS.gene43109:CDS | 25.0% |
! | TTTCATGTTACTGATCAAAA+TGG | - | chr7.2:77187699-77187718 | MS.gene43109:CDS | 25.0% |
!! | TGTGATCAACTTTTATATTG+TGG | + | chr7.2:77188022-77188041 | None:intergenic | 25.0% |
!! | TTTTCATGTGAATTTTGTGT+AGG | - | chr7.2:77187411-77187430 | MS.gene43109:CDS | 25.0% |
!!! | AACTAGTACTTTTTTTCTTG+AGG | - | chr7.2:77188260-77188279 | MS.gene43109:intron | 25.0% |
!!! | AAGAAAAAAAGTACTAGTTC+TGG | + | chr7.2:77188259-77188278 | None:intergenic | 25.0% |
AGAGCTTATATTTCATCTGA+TGG | - | chr7.2:77187508-77187527 | MS.gene43109:CDS | 30.0% | |
ATCAATTGATGTATGCTGAT+CGG | - | chr7.2:77188703-77188722 | MS.gene43109:intron | 30.0% | |
ATCATCCTATTCCAATCAAA+AGG | + | chr7.2:77188139-77188158 | None:intergenic | 30.0% | |
CAGAACAACAACTTTGATAA+AGG | - | chr7.2:77187312-77187331 | MS.gene43109:CDS | 30.0% | |
! | TAATAAACGTGGTAGTTTGT+TGG | - | chr7.2:77187444-77187463 | MS.gene43109:CDS | 30.0% |
! | TTTAGTCATTGCCTTTTGAT+TGG | - | chr7.2:77188125-77188144 | MS.gene43109:intron | 30.0% |
AAGCAGAAGATGCTTAATCT+TGG | + | chr7.2:77188601-77188620 | None:intergenic | 35.0% | |
AAGCATATTTCCATGATTCC+CGG | - | chr7.2:77187916-77187935 | MS.gene43109:CDS | 35.0% | |
CGGGATTATGACATATATGA+TGG | - | chr7.2:77188723-77188742 | MS.gene43109:intron | 35.0% | |
GCTTATATTTCATCTGATGG+TGG | - | chr7.2:77187511-77187530 | MS.gene43109:CDS | 35.0% | |
GTCATTCATGTTCTTGCAAT+TGG | - | chr7.2:77188949-77188968 | MS.gene43109:intron | 35.0% | |
TCAATTGATGTATGCTGATC+GGG | - | chr7.2:77188704-77188723 | MS.gene43109:intron | 35.0% | |
TGTAGCTGATAGAATTCAAC+AGG | - | chr7.2:77187743-77187762 | MS.gene43109:CDS | 35.0% | |
! | ACGGTATCGAATAGTAACTT+CGG | + | chr7.2:77188852-77188871 | None:intergenic | 35.0% |
!! | ATATTTCATCTGATGGTGGA+TGG | - | chr7.2:77187515-77187534 | MS.gene43109:CDS | 35.0% |
!! | CATTGCCTTTTGATTGGAAT+AGG | - | chr7.2:77188131-77188150 | MS.gene43109:intron | 35.0% |
!! | GTTGATAGTGCTAATAAACG+TGG | - | chr7.2:77187433-77187452 | MS.gene43109:CDS | 35.0% |
!! | GTTGATGATTGCATCGATAA+AGG | - | chr7.2:77188792-77188811 | MS.gene43109:CDS | 35.0% |
AATAGTAACTTCGGTCGATC+TGG | + | chr7.2:77188843-77188862 | None:intergenic | 40.0% | |
ATGCAGTATGTTGTGTACCA+TGG | - | chr7.2:77188888-77188907 | MS.gene43109:intron | 40.0% | |
CAGCAATAAATCGGTCTCAA+AGG | - | chr7.2:77187946-77187965 | MS.gene43109:intron | 40.0% | |
CATACAACGATCGAGTTAAC+AGG | - | chr7.2:77188411-77188430 | MS.gene43109:intron | 40.0% | |
CATGTCTGTGATAGTACACA+CGG | + | chr7.2:77188871-77188890 | None:intergenic | 40.0% | |
CTGGACACACAATTCAAGAA+TGG | - | chr7.2:77188512-77188531 | MS.gene43109:intron | 40.0% | |
GAAGATGCTTAATCTTGGCA+AGG | + | chr7.2:77188596-77188615 | None:intergenic | 40.0% | |
GATATACCGTCGTGAATTTG+AGG | - | chr7.2:77188814-77188833 | MS.gene43109:CDS | 40.0% | |
TGTGGTAAAATCGGCAAATG+TGG | + | chr7.2:77188004-77188023 | None:intergenic | 40.0% | |
TTTGTTCGACTCACAAGGAT+AGG | - | chr7.2:77188673-77188692 | MS.gene43109:intron | 40.0% | |
! | AAGACTTCTGAAAGCAATCC+TGG | + | chr7.2:77188447-77188466 | None:intergenic | 40.0% |
! | GTTTTCTTGTTCCAGTCACT+CGG | - | chr7.2:77188327-77188346 | MS.gene43109:intron | 40.0% |
! | TGAAGGAACAGAAGCATATC+AGG | - | chr7.2:77188923-77188942 | MS.gene43109:intron | 40.0% |
!! | ATCTGATGGTGGATGGTTTA+TGG | - | chr7.2:77187522-77187541 | MS.gene43109:CDS | 40.0% |
!! | TTCGTTTTGTTCGACTCACA+AGG | - | chr7.2:77188668-77188687 | MS.gene43109:intron | 40.0% |
AACACCGACAGATCTTCTCA+CGG | + | chr7.2:77188376-77188395 | None:intergenic | 45.0% | |
CATGGAACTGTCAATGCTGA+AGG | - | chr7.2:77188906-77188925 | MS.gene43109:intron | 45.0% | |
CCTCAAATGCAATGTGGTAG+CGG | - | chr7.2:77188482-77188501 | MS.gene43109:intron | 45.0% | |
CGACATCACAACCACAATTG+CGG | - | chr7.2:77187978-77187997 | MS.gene43109:intron | 45.0% | |
CTTCTGCTTTATGTGCTGAG+AGG | - | chr7.2:77188612-77188631 | MS.gene43109:intron | 45.0% | |
GATGCTTAATCTTGGCAAGG+CGG | + | chr7.2:77188593-77188612 | None:intergenic | 45.0% | |
TCGAGTTAACAGGACGAGAT+AGG | - | chr7.2:77188421-77188440 | MS.gene43109:intron | 45.0% | |
TGCTGACCTCAAATGCAATG+TGG | - | chr7.2:77188476-77188495 | MS.gene43109:intron | 45.0% | |
TGGACACCTCAAATTCACGA+CGG | + | chr7.2:77188823-77188842 | None:intergenic | 45.0% | |
!! | CTTCAGCATTGACAGTTCCA+TGG | + | chr7.2:77188908-77188927 | None:intergenic | 45.0% |
!! | GATGGTGGATGGTTTATGGA+TGG | - | chr7.2:77187526-77187545 | MS.gene43109:CDS | 45.0% |
!! | AAAAAATATTAAAAAAACAA+TGG | + | chr7.2:77187608-77187627 | None:intergenic | 5.0% |
CCGCTACCACATTGCATTTG+AGG | + | chr7.2:77188485-77188504 | None:intergenic | 50.0% | |
CGACAGATCTTCTCACGGAT+CGG | + | chr7.2:77188371-77188390 | None:intergenic | 50.0% | |
CGATCCGTGAGAAGATCTGT+CGG | - | chr7.2:77188369-77188388 | MS.gene43109:intron | 50.0% | |
GTTCGACTCACAAGGATAGG+AGG | - | chr7.2:77188676-77188695 | MS.gene43109:intron | 50.0% | |
TACATCACCGACGACACAAC+AGG | - | chr7.2:77188546-77188565 | MS.gene43109:CDS | 50.0% | |
TTAACAGGACGAGATAGGCC+AGG | - | chr7.2:77188426-77188445 | MS.gene43109:intron | 50.0% | |
TTAATCTTGGCAAGGCGGTC+AGG | + | chr7.2:77188588-77188607 | None:intergenic | 50.0% | |
TTCTCACGGATCGGAAGCTA+CGG | + | chr7.2:77188362-77188381 | None:intergenic | 50.0% | |
! | AGACCGATTTATTGCTGCCG+CGG | + | chr7.2:77187943-77187962 | None:intergenic | 50.0% |
! | ATCTGTCGGTGTTCAAGCTG+CGG | - | chr7.2:77188383-77188402 | MS.gene43109:intron | 50.0% |
AGGCGGTCAGGATTGTCGAT+CGG | + | chr7.2:77188576-77188595 | None:intergenic | 55.0% | |
ATTTATTGCTGCCGCGGACC+GGG | + | chr7.2:77187937-77187956 | None:intergenic | 55.0% | |
CGGCAATCCTGTTGTGTCGT+CGG | + | chr7.2:77188556-77188575 | None:intergenic | 55.0% | |
GATCGGAAGCTACGGACTCT+TGG | + | chr7.2:77188354-77188373 | None:intergenic | 55.0% | |
GATTTATTGCTGCCGCGGAC+CGG | + | chr7.2:77187938-77187957 | None:intergenic | 55.0% | |
GGCAAATGTGGCCGCAATTG+TGG | + | chr7.2:77187992-77188011 | None:intergenic | 55.0% | |
GGTCCGCGGCAGCAATAAAT+CGG | - | chr7.2:77187937-77187956 | MS.gene43109:intron | 55.0% | |
TTTCCATGATTCCCGGTCCG+CGG | - | chr7.2:77187923-77187942 | MS.gene43109:CDS | 55.0% | |
!! | ATGTGGTAGCGGCTGAAGTC+TGG | - | chr7.2:77188493-77188512 | MS.gene43109:intron | 55.0% |
GGACTCTTGGACCGAGTGAC+TGG | + | chr7.2:77188341-77188360 | None:intergenic | 60.0% | |
CTGCCGCGGACCGGGAATCA+TGG | + | chr7.2:77187929-77187948 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 77187288 | 77189007 | 77187288 | ID=MS.gene43109 |
chr7.2 | mRNA | 77187288 | 77189007 | 77187288 | ID=MS.gene43109.t1;Parent=MS.gene43109 |
chr7.2 | exon | 77188962 | 77189007 | 77188962 | ID=MS.gene43109.t1.exon1;Parent=MS.gene43109.t1 |
chr7.2 | CDS | 77188962 | 77189007 | 77188962 | ID=cds.MS.gene43109.t1;Parent=MS.gene43109.t1 |
chr7.2 | exon | 77188748 | 77188862 | 77188748 | ID=MS.gene43109.t1.exon2;Parent=MS.gene43109.t1 |
chr7.2 | CDS | 77188748 | 77188862 | 77188748 | ID=cds.MS.gene43109.t1;Parent=MS.gene43109.t1 |
chr7.2 | exon | 77188531 | 77188598 | 77188531 | ID=MS.gene43109.t1.exon3;Parent=MS.gene43109.t1 |
chr7.2 | CDS | 77188531 | 77188598 | 77188531 | ID=cds.MS.gene43109.t1;Parent=MS.gene43109.t1 |
chr7.2 | exon | 77187288 | 77187953 | 77187288 | ID=MS.gene43109.t1.exon4;Parent=MS.gene43109.t1 |
chr7.2 | CDS | 77187288 | 77187953 | 77187288 | ID=cds.MS.gene43109.t1;Parent=MS.gene43109.t1 |
Gene Sequence |
Protein sequence |