AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43932

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43932.t1 MTR_5g035580 85.408 466 17 1 1 415 1 466 0.0 801
MS.gene43932.t1 MTR_5g035560 81.441 458 34 1 9 415 7 464 0.0 754
MS.gene43932.t1 MTR_6g038230 41.886 456 211 2 3 404 1 456 1.71e-125 370
MS.gene43932.t1 MTR_6g038200 41.575 457 213 3 3 405 1 457 4.09e-125 370
MS.gene43932.t1 MTR_6g038220 42.105 456 211 3 3 405 1 456 2.84e-120 357
MS.gene43932.t1 MTR_6g038240 39.640 444 214 2 13 402 11 454 6.18e-115 344
MS.gene43932.t1 MTR_7g080940 39.198 449 219 5 10 405 8 455 3.38e-108 327
MS.gene43932.t1 MTR_7g080935 39.294 453 221 5 9 408 7 458 2.92e-107 324
MS.gene43932.t1 MTR_8g088560 39.341 455 216 6 10 405 7 460 5.13e-107 323
MS.gene43932.t1 MTR_6g038300 38.839 448 215 4 13 403 11 456 1.32e-105 320
MS.gene43932.t1 MTR_7g080950 37.220 446 226 4 10 402 3 447 3.20e-102 311
MS.gene43932.t1 MTR_7g080900 37.054 448 224 10 11 402 10 455 1.24e-89 279
MS.gene43932.t1 MTR_8g083290 34.273 461 225 16 14 400 5 461 1.12e-72 235
MS.gene43932.t1 MTR_8g083280 31.906 467 227 16 14 402 8 461 3.71e-62 208
MS.gene43932.t1 MTR_1g107350 31.263 467 240 11 12 402 7 468 2.85e-61 206
MS.gene43932.t1 MTR_1g107380 30.128 468 249 9 12 405 12 475 4.09e-61 205
MS.gene43932.t1 MTR_3g049970 31.144 472 238 13 12 404 8 471 4.63e-61 205
MS.gene43932.t1 MTR_1g107315 31.635 471 239 12 11 404 6 470 1.26e-56 194
MS.gene43932.t1 MTR_1g107360 29.978 457 251 11 12 402 8 461 6.42e-55 189
MS.gene43932.t1 MTR_1g032490 30.213 470 243 10 11 402 8 470 1.10e-53 186
MS.gene43932.t1 MTR_3g084520 36.478 318 181 9 10 309 3 317 1.67e-53 185
MS.gene43932.t1 MTR_3g084520 49.351 77 38 1 327 402 396 472 3.53e-16 80.5
MS.gene43932.t1 MTR_1g107365 28.571 455 254 10 12 402 44 491 7.78e-53 184
MS.gene43932.t1 MTR_7g080960 41.475 217 123 3 11 223 10 226 2.86e-51 179
MS.gene43932.t1 MTR_7g080960 35.025 197 87 4 228 402 293 470 1.07e-25 108
MS.gene43932.t1 MTR_1g107285 27.975 479 265 10 8 413 3 474 4.39e-51 179
MS.gene43932.t1 MTR_4g095008 30.526 475 236 19 11 406 9 468 6.60e-47 169
MS.gene43932.t1 MTR_5g016480 28.092 477 258 12 12 409 7 477 1.71e-45 164
MS.gene43932.t1 MTR_3g084540 33.133 332 199 9 10 321 3 331 1.19e-44 161
MS.gene43932.t1 MTR_3g084540 47.436 78 39 2 327 402 396 473 2.23e-14 75.1
MS.gene43932.t1 MTR_1g107375 32.508 323 195 7 11 319 6 319 7.75e-44 159
MS.gene43932.t1 MTR_3g479520 26.501 483 263 12 5 402 7 482 1.34e-43 159
MS.gene43932.t1 MTR_0036s0220 27.039 466 235 14 10 385 9 459 1.89e-43 158
MS.gene43932.t1 MTR_3g479490 25.462 487 263 11 9 406 2 477 2.27e-43 158
MS.gene43932.t1 MTR_5g464810 26.875 480 249 13 10 400 9 475 4.49e-43 157
MS.gene43932.t1 MTR_5g064240 26.875 480 249 13 10 400 9 475 4.49e-43 157
MS.gene43932.t1 MTR_4g094920 34.320 338 182 13 11 330 24 339 7.30e-43 157
MS.gene43932.t1 MTR_8g064880 32.803 314 191 8 12 308 8 318 1.46e-42 156
MS.gene43932.t1 MTR_3g079480 25.813 492 265 12 6 408 14 494 2.66e-41 152
MS.gene43932.t1 MTR_6g014186 27.517 447 252 15 13 402 7 438 1.50e-40 149
MS.gene43932.t1 MTR_5g464760 25.103 486 256 14 10 402 9 479 3.01e-40 149
MS.gene43932.t1 MTR_8g064870 32.268 313 190 8 12 308 10 316 3.90e-40 149
MS.gene43932.t1 MTR_3g084530 33.033 333 198 10 10 321 3 331 4.57e-40 149
MS.gene43932.t1 MTR_3g084530 50.649 77 37 1 327 402 396 472 8.50e-16 79.3
MS.gene43932.t1 MTR_3g008010 30.240 334 192 9 9 308 6 332 1.08e-38 145
MS.gene43932.t1 MTR_2g008210 25.786 477 256 15 13 402 11 476 1.28e-38 145
MS.gene43932.t1 MTR_6g013440 29.882 338 190 10 9 308 7 335 1.57e-36 139
MS.gene43932.t1 MTR_7g013180 26.724 464 242 16 11 400 3 442 7.30e-36 137
MS.gene43932.t1 MTR_6g014290 28.144 334 199 8 9 308 6 332 2.94e-35 136
MS.gene43932.t1 MTR_5g072830 25.902 471 248 15 9 404 6 450 5.22e-35 135
MS.gene43932.t1 MTR_6g014220 28.060 335 198 8 9 308 6 332 6.69e-35 135
MS.gene43932.t1 MTR_6g014250 28.144 334 199 9 9 308 6 332 1.84e-34 134
MS.gene43932.t1 MTR_6g014040 28.955 335 190 11 13 308 10 335 2.49e-34 133
MS.gene43932.t1 MTR_4g094220 28.358 335 192 8 13 308 7 332 1.02e-33 132
MS.gene43932.t1 MTR_7g011470 30.503 318 192 11 13 308 10 320 1.10e-32 129
MS.gene43932.t1 MTR_3g479470 26.261 476 258 15 1 391 1 468 4.09e-32 127
MS.gene43932.t1 MTR_7g011470 29.299 314 197 8 13 308 10 316 6.07e-32 126
MS.gene43932.t1 MTR_6g014270 28.190 337 191 12 13 308 7 333 3.52e-31 124
MS.gene43932.t1 MTR_7g055710 27.945 365 216 14 3 335 1 350 4.47e-31 124
MS.gene43932.t1 MTR_0288s0020 27.027 333 187 9 9 308 6 315 8.32e-31 123
MS.gene43932.t1 MTR_6g014200 28.955 335 189 12 13 308 7 331 1.25e-30 123
MS.gene43932.t1 MTR_6g014310 27.761 335 193 10 13 308 11 335 1.62e-30 122
MS.gene43932.t1 MTR_5g072810 24.211 475 262 14 5 404 4 455 1.66e-30 122
MS.gene43932.t1 MTR_8g059425 26.807 332 198 9 13 308 10 332 2.44e-30 122
MS.gene43932.t1 MTR_5g087620 28.804 368 207 13 13 335 10 367 4.29e-30 121
MS.gene43932.t1 MTR_7g013260 29.814 322 192 12 13 319 6 308 4.87e-30 120
MS.gene43932.t1 MTR_6g013680 28.307 378 223 14 58 402 12 374 7.30e-30 119
MS.gene43932.t1 MTR_6g014150 28.955 335 189 12 13 308 7 331 1.22e-29 120
MS.gene43932.t1 MTR_5g072820 28.076 317 179 10 13 306 10 300 2.47e-29 119
MS.gene43932.t1 MTR_5g072860 25.527 474 253 16 13 407 18 470 3.41e-29 119
MS.gene43932.t1 MTR_6g014187 27.410 332 198 14 13 308 10 334 5.37e-29 118
MS.gene43932.t1 MTR_7g013240 30.650 323 187 12 13 319 6 307 5.71e-29 117
MS.gene43932.t1 MTR_6g013960 26.205 332 202 10 13 308 10 334 5.98e-29 118
MS.gene43932.t1 MTR_3g031400 25.495 455 257 16 13 405 18 452 6.61e-29 118
MS.gene43932.t1 MTR_3g031450 26.039 457 254 17 13 405 18 454 6.74e-29 118
MS.gene43932.t1 MTR_5g072840 26.829 328 212 8 9 323 6 318 1.18e-28 117
MS.gene43932.t1 MTR_7g013200 30.275 327 188 12 13 321 5 309 1.24e-28 117
MS.gene43932.t1 MTR_7g070610 27.824 363 223 11 1 335 1 352 1.35e-28 117
MS.gene43932.t1 MTR_6g014050 27.844 334 194 10 13 308 11 335 1.62e-28 117
MS.gene43932.t1 MTR_6g013990 29.167 336 185 14 13 308 10 332 2.49e-28 116
MS.gene43932.t1 MTR_3g069690 25.918 463 251 14 12 402 7 449 2.52e-28 116
MS.gene43932.t1 MTR_7g013220 30.117 342 180 13 13 321 5 320 7.45e-28 114
MS.gene43932.t1 MTR_6g011340 27.492 331 199 11 13 308 10 334 8.88e-28 115
MS.gene43932.t1 MTR_6g014170 28.173 323 197 11 9 308 6 316 1.05e-27 114
MS.gene43932.t1 MTR_7g070660 28.532 361 214 13 3 335 1 345 1.15e-27 114
MS.gene43932.t1 MTR_6g013450 28.012 332 197 13 13 308 10 335 1.76e-27 114
MS.gene43932.t1 MTR_6g014020 26.647 334 198 11 13 308 10 334 2.82e-27 113
MS.gene43932.t1 MTR_6g013900 28.267 329 198 12 13 308 10 333 3.42e-27 113
MS.gene43932.t1 MTR_8g012635 24.638 483 262 11 11 404 4 473 9.29e-27 112
MS.gene43932.t1 MTR_0184s0040 24.435 487 252 12 11 404 19 482 1.37e-26 111
MS.gene43932.t1 MTR_0078s0190 24.435 487 252 12 11 404 19 482 1.37e-26 111
MS.gene43932.t1 MTR_4g064987 32.051 312 178 14 14 308 9 303 1.54e-26 111
MS.gene43932.t1 MTR_5g075440 25.263 475 247 17 12 404 9 457 1.80e-26 110
MS.gene43932.t1 MTR_6g013920 29.091 330 194 14 13 308 10 333 3.60e-26 110
MS.gene43932.t1 MTR_4g064987 31.148 305 184 12 14 308 9 297 4.77e-26 109
MS.gene43932.t1 MTR_7g047030 24.431 483 250 14 13 402 6 466 7.33e-26 109
MS.gene43932.t1 MTR_7g047270 24.431 483 250 14 13 402 6 466 7.33e-26 109
MS.gene43932.t1 MTR_5g031840 30.211 331 179 16 13 308 5 318 1.75e-25 108
MS.gene43932.t1 MTR_6g013435 29.057 265 165 7 148 399 49 303 2.87e-25 105
MS.gene43932.t1 MTR_3g069710 24.307 469 265 14 4 402 3 451 3.28e-25 107
MS.gene43932.t1 MTR_4g485630 28.000 350 203 15 7 324 3 335 4.27e-25 107
MS.gene43932.t1 MTR_7g070740 27.147 361 224 13 3 335 1 350 8.25e-25 106
MS.gene43932.t1 MTR_6g023665 23.566 488 236 14 14 398 14 467 8.35e-25 106
MS.gene43932.t1 MTR_6g014300 25.959 339 190 10 7 308 6 320 1.15e-24 105
MS.gene43932.t1 MTR_5g031860 25.052 479 257 16 13 406 12 473 3.20e-24 104
MS.gene43932.t1 MTR_8g012745 28.213 319 194 9 11 309 4 307 5.86e-24 103
MS.gene43932.t1 MTR_0078s0010 23.819 487 260 13 13 408 6 472 6.00e-24 103
MS.gene43932.t1 MTR_7g070860 25.567 485 245 21 9 402 3 462 1.42e-23 102
MS.gene43932.t1 MTR_7g070800 28.177 362 202 17 10 335 3 342 1.84e-23 102
MS.gene43932.t1 MTR_7g070930 26.099 364 223 14 4 335 5 354 2.01e-23 102
MS.gene43932.t1 MTR_8g009050 28.529 340 183 15 11 319 4 314 2.12e-23 102
MS.gene43932.t1 MTR_5g016660 28.653 349 212 12 15 335 12 351 2.55e-23 102
MS.gene43932.t1 MTR_5g090660 27.714 350 213 14 14 338 6 340 2.96e-23 102
MS.gene43932.t1 MTR_8g077590 29.595 321 180 12 13 309 9 307 3.55e-23 101
MS.gene43932.t1 MTR_5g031830 25.000 484 252 20 13 406 12 474 4.27e-23 101
MS.gene43932.t1 MTR_6g488280 23.529 493 234 15 10 396 3 458 8.35e-23 100
MS.gene43932.t1 MTR_0428s0010 23.529 493 234 15 10 396 3 458 8.35e-23 100
MS.gene43932.t1 MTR_4g128720 22.894 463 268 11 12 404 14 457 1.01e-22 100
MS.gene43932.t1 MTR_7g071040 25.549 364 231 13 2 336 6 358 1.03e-22 100
MS.gene43932.t1 MTR_3g479610 25.559 313 166 7 148 402 9 312 1.20e-22 98.2
MS.gene43932.t1 MTR_7g117405 27.434 339 197 13 2 309 1 321 1.25e-22 100
MS.gene43932.t1 MTR_6g033625 24.313 473 251 16 16 398 5 460 1.41e-22 99.8
MS.gene43932.t1 MTR_5g090630 27.660 329 186 11 13 318 5 304 1.65e-22 99.8
MS.gene43932.t1 MTR_5g090620 27.190 331 192 11 14 318 6 313 1.74e-22 99.8
MS.gene43932.t1 MTR_0078s0060 23.014 491 250 15 11 402 4 465 1.87e-22 99.4
MS.gene43932.t1 MTR_5g058320 27.301 326 191 13 13 308 10 319 2.82e-22 99.0
MS.gene43932.t1 MTR_6g033615 28.342 374 167 14 96 396 99 444 2.91e-22 99.0
MS.gene43932.t1 MTR_4g108250 27.174 368 219 15 3 335 1 354 3.32e-22 99.0
MS.gene43932.t1 MTR_5g090700 25.826 333 196 12 14 318 6 315 4.72e-22 98.2
MS.gene43932.t1 MTR_6g014240 27.795 331 170 16 12 308 6 301 5.21e-22 98.2
MS.gene43932.t1 MTR_8g066610 27.168 346 218 14 9 326 5 344 5.32e-22 98.2
MS.gene43932.t1 MTR_0009s0240 27.143 350 203 12 9 326 3 332 6.92e-22 97.8
MS.gene43932.t1 MTR_0891s0010 25.510 294 156 6 173 408 7 295 7.11e-22 95.5
MS.gene43932.t1 MTR_7g071050 26.286 350 179 12 1 326 1 295 1.07e-21 97.1
MS.gene43932.t1 MTR_6g033725 26.648 364 185 12 96 391 101 450 1.16e-21 97.1
MS.gene43932.t1 MTR_0078s0200 26.899 316 197 10 12 308 5 305 1.30e-21 95.1
MS.gene43932.t1 MTR_1g107340 28.980 245 156 5 8 236 3 245 1.33e-21 94.0
MS.gene43932.t1 MTR_0184s0030 26.899 316 197 10 12 308 5 305 1.40e-21 97.1
MS.gene43932.t1 MTR_3g009510 27.642 369 214 12 14 351 6 352 1.73e-21 96.7
MS.gene43932.t1 MTR_5g098960 26.074 326 214 9 14 323 8 322 2.16e-21 96.3
MS.gene43932.t1 MTR_8g006220 27.640 322 179 13 14 308 7 301 2.28e-21 96.3
MS.gene43932.t1 MTR_8g009063 26.686 341 186 12 1 308 1 310 2.48e-21 96.3
MS.gene43932.t1 MTR_8g465670 26.708 322 182 12 14 308 8 302 2.87e-21 95.9
MS.gene43932.t1 MTR_6g033675 25.490 357 195 17 16 326 5 336 3.30e-21 95.9
MS.gene43932.t1 MTR_8g009055 28.653 349 195 15 11 332 4 325 3.57e-21 95.5
MS.gene43932.t1 MTR_8g008990 28.406 345 201 14 11 332 4 325 7.60e-21 94.7
MS.gene43932.t1 MTR_8g008990 42.667 75 43 0 324 398 390 464 6.52e-11 64.3
MS.gene43932.t1 MTR_7g102450 26.852 324 205 12 1 309 1 307 8.59e-21 94.7
MS.gene43932.t1 MTR_7g070780 24.048 499 274 15 3 407 1 488 1.58e-20 94.0
MS.gene43932.t1 MTR_4g128690 25.959 339 213 9 7 326 9 328 1.83e-20 93.6
MS.gene43932.t1 MTR_7g117170 28.173 323 178 12 14 308 16 312 2.04e-20 93.6
MS.gene43932.t1 MTR_5g098930 25.513 341 182 11 12 318 4 306 2.82e-20 92.8
MS.gene43932.t1 MTR_6g033660 31.621 253 130 13 96 326 104 335 3.30e-20 92.8
MS.gene43932.t1 MTR_8g071070 26.722 363 198 16 9 326 3 342 4.09e-20 92.4
MS.gene43932.t1 MTR_7g070910 24.176 364 234 13 3 336 1 352 5.56e-20 92.4
MS.gene43932.t1 MTR_8g074550 24.932 369 198 13 13 333 8 345 6.49e-20 92.0
MS.gene43932.t1 MTR_5g045960 24.847 326 203 13 11 307 7 319 1.22e-19 91.3
MS.gene43932.t1 MTR_5g040030 26.703 367 225 15 1 335 1 355 1.33e-19 91.3
MS.gene43932.t1 MTR_5g090580 25.568 352 220 11 14 338 6 342 2.16e-19 90.5
MS.gene43932.t1 MTR_1g029540 25.680 331 193 11 7 315 8 307 3.23e-19 89.7
MS.gene43932.t1 MTR_2g008225 26.149 348 221 11 2 326 4 338 3.35e-19 89.7
MS.gene43932.t1 MTR_8g006270 27.181 298 182 7 19 309 32 301 3.43e-19 89.7
MS.gene43932.t1 MTR_8g012650 25.496 353 224 9 13 339 6 345 4.68e-19 89.4
MS.gene43932.t1 MTR_8g027885 26.752 314 188 10 14 308 19 309 4.69e-19 89.4
MS.gene43932.t1 MTR_8g006230 30.252 238 135 8 102 327 46 264 7.60e-19 86.7
MS.gene43932.t1 MTR_5g045970 27.350 351 209 17 10 326 13 351 8.54e-19 88.6
MS.gene43932.t1 MTR_2g098430 24.089 494 259 18 14 407 7 484 9.49e-19 88.6
MS.gene43932.t1 MTR_6g005600 26.667 330 176 12 13 308 6 303 1.47e-18 87.8
MS.gene43932.t1 MTR_1g019510 27.302 315 195 10 11 308 4 301 1.52e-18 87.8
MS.gene43932.t1 MTR_8g083300 37.037 135 76 4 14 141 8 140 1.87e-18 82.4
MS.gene43932.t1 MTR_8g006260 28.296 311 195 10 13 306 6 305 3.00e-18 87.0
MS.gene43932.t1 MTR_5g072850 25.641 429 223 19 13 402 10 381 4.55e-18 85.9
MS.gene43932.t1 MTR_7g070810 26.075 372 206 17 1 335 1 340 7.72e-18 85.9
MS.gene43932.t1 MTR_5g039900 22.908 502 268 17 1 402 1 483 1.28e-17 85.1
MS.gene43932.t1 MTR_7g070940 25.278 360 223 12 1 335 1 339 1.40e-17 85.1
MS.gene43932.t1 MTR_8g009073 26.730 318 195 12 11 308 4 303 1.61e-17 84.7
MS.gene43932.t1 MTR_5g090670 24.383 324 198 10 14 309 6 310 1.71e-17 84.7
MS.gene43932.t1 MTR_6g035295 25.680 331 200 12 11 310 10 325 1.78e-17 84.7
MS.gene43932.t1 MTR_2g008220 24.928 345 227 10 3 326 4 337 2.60e-17 84.0
MS.gene43932.t1 MTR_5g090600 25.532 329 206 9 14 323 6 314 3.44e-17 83.6
MS.gene43932.t1 MTR_5g004940 32.609 184 84 4 259 402 194 377 4.37e-17 82.8
MS.gene43932.t1 MTR_5g004940 26.705 176 108 4 13 171 17 188 4.75e-15 76.6
MS.gene43932.t1 MTR_0536s0020 25.373 335 204 11 14 321 19 334 5.25e-17 83.2
MS.gene43932.t1 MTR_7g046490 25.000 324 186 9 13 308 6 300 5.68e-17 83.2
MS.gene43932.t1 MTR_4g008630 25.225 333 201 13 7 318 8 313 7.75e-17 82.4
MS.gene43932.t1 MTR_2g046750 24.169 331 199 12 14 315 6 313 8.50e-17 82.4
MS.gene43932.t1 MTR_4g082810 25.405 370 216 11 12 352 6 344 9.89e-17 82.0
MS.gene43932.t1 MTR_3g479620 31.429 140 84 2 13 140 6 145 1.10e-16 77.8
MS.gene43932.t1 MTR_7g070870 25.070 355 210 13 12 335 18 347 1.91e-16 81.3
MS.gene43932.t1 MTR_4g485590 26.347 334 198 14 13 326 9 314 2.47e-16 80.9
MS.gene43932.t1 MTR_8g009067 26.935 323 188 11 11 308 4 303 3.18e-16 80.9
MS.gene43932.t1 MTR_4g082820 27.174 368 210 12 12 352 6 342 3.28e-16 80.9
MS.gene43932.t1 MTR_4g485640 25.532 376 186 12 111 406 309 670 6.06e-16 80.5
MS.gene43932.t1 MTR_8g027870 25.234 321 184 10 14 308 19 309 6.21e-16 79.7
MS.gene43932.t1 MTR_5g067170 23.102 303 215 6 17 307 15 311 6.45e-16 79.7
MS.gene43932.t1 MTR_7g470610 29.386 228 125 10 119 335 5 207 9.71e-16 77.8
MS.gene43932.t1 MTR_7g070583 29.386 228 125 10 119 335 5 207 9.71e-16 77.8
MS.gene43932.t1 MTR_6g036650 27.042 355 204 16 8 326 8 343 9.85e-16 79.3
MS.gene43932.t1 MTR_4g117960 25.439 342 197 14 17 321 15 335 1.15e-15 79.0
MS.gene43932.t1 MTR_8g008970 24.843 318 201 10 11 308 4 303 1.22e-15 79.7
MS.gene43932.t1 MTR_6g042310 24.419 344 230 11 2 326 4 336 1.75e-15 78.6
MS.gene43932.t1 MTR_2g008226 26.361 349 212 14 9 325 6 341 2.02e-15 78.2
MS.gene43932.t1 MTR_6g052375 29.583 240 131 9 148 366 15 237 2.38e-15 77.0
MS.gene43932.t1 MTR_4g024020 26.331 338 195 14 12 312 8 328 2.40e-15 78.2
MS.gene43932.t1 MTR_8g006730 24.586 362 229 12 9 349 2 340 2.70e-15 77.8
MS.gene43932.t1 MTR_5g027210 23.708 329 205 12 14 308 5 321 4.18e-15 77.4
MS.gene43932.t1 MTR_5g070040 24.633 341 201 12 14 319 12 331 4.26e-15 77.4
MS.gene43932.t1 MTR_6g035185 24.024 333 215 11 17 321 15 337 6.38e-15 76.6
MS.gene43932.t1 MTR_8g044140 29.167 240 145 11 111 335 87 316 7.12e-15 76.6
MS.gene43932.t1 MTR_8g006710 24.308 325 198 9 9 308 2 303 1.15e-14 75.9
MS.gene43932.t1 MTR_6g078320 22.222 333 204 10 13 308 11 325 1.42e-14 75.9
MS.gene43932.t1 MTR_4g117980 25.145 346 195 11 17 321 15 337 1.60e-14 75.5
MS.gene43932.t1 MTR_6g014190 31.884 138 89 4 173 308 7 141 3.19e-14 73.2
MS.gene43932.t1 MTR_4g031800 26.479 355 205 16 14 335 10 341 3.50e-14 74.3
MS.gene43932.t1 MTR_2g040530 23.810 336 203 11 14 319 6 318 5.33e-14 73.9
MS.gene43932.t1 MTR_2g034990 23.871 310 206 8 17 307 15 313 5.43e-14 73.9
MS.gene43932.t1 MTR_4g077960 25.301 332 195 13 23 325 2 309 5.55e-14 73.6
MS.gene43932.t1 MTR_1g040310 24.650 357 217 15 12 335 14 351 6.73e-14 73.6
MS.gene43932.t1 MTR_7g102550 26.036 338 197 16 9 311 5 324 8.55e-14 73.2
MS.gene43932.t1 MTR_0199s0010 24.082 245 148 7 9 221 6 244 1.04e-13 71.6
MS.gene43932.t1 MTR_2g059240 22.382 487 276 15 1 403 1 469 1.04e-13 73.2
MS.gene43932.t1 MTR_4g117890 22.254 355 218 9 14 335 14 343 1.07e-13 73.2
MS.gene43932.t1 MTR_4g117950 25.723 346 196 14 17 336 10 320 1.17e-13 72.8
MS.gene43932.t1 MTR_8g090095 22.905 358 205 11 18 335 30 356 1.53e-13 72.4
MS.gene43932.t1 MTR_7g102460 25.075 335 201 15 12 312 8 326 2.00e-13 72.4
MS.gene43932.t1 MTR_4g485620 26.524 328 211 13 27 331 3 323 2.45e-13 72.0
MS.gene43932.t1 MTR_7g102560 24.159 327 211 13 12 312 8 323 3.18e-13 71.6
MS.gene43932.t1 MTR_4g118000 24.699 332 201 13 17 321 16 325 3.36e-13 71.6
MS.gene43932.t1 MTR_8g466240 25.714 350 211 15 13 335 8 335 8.37e-13 70.1
MS.gene43932.t1 MTR_5g090690 24.082 245 137 7 73 309 35 238 1.04e-12 69.7
MS.gene43932.t1 MTR_5g019580 24.688 320 212 8 9 309 3 312 1.17e-12 69.7
MS.gene43932.t1 MTR_5g090610 23.209 349 220 12 13 338 5 328 1.65e-12 69.3
MS.gene43932.t1 MTR_8g009067 29.648 199 114 7 120 308 3 185 1.73e-12 68.6
MS.gene43932.t1 MTR_8g068340 23.167 341 221 10 12 324 11 338 2.25e-12 68.9
MS.gene43932.t1 MTR_6g035265 24.398 332 210 12 17 331 15 322 4.71e-12 67.8
MS.gene43932.t1 MTR_8g009073 31.169 154 84 6 161 308 37 174 4.72e-12 67.0
MS.gene43932.t1 MTR_8g007585 26.623 154 98 4 9 149 6 157 1.31e-11 66.2
MS.gene43932.t1 MTR_2g046820 24.438 356 214 13 14 339 6 336 1.39e-11 66.2
MS.gene43932.t1 MTR_0536s0010 25.967 362 194 17 3 324 11 338 2.78e-11 65.5
MS.gene43932.t1 MTR_8g032950 23.184 358 218 16 14 335 13 349 6.23e-11 64.3
MS.gene43932.t1 MTR_5g029800 23.708 329 217 11 17 321 15 333 9.49e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43932.t1 AT1G24100 43.363 452 190 7 13 402 11 458 1.11e-122 363
MS.gene43932.t1 AT2G43820 42.444 450 189 9 13 402 7 446 5.92e-116 346
MS.gene43932.t1 AT2G43840 42.572 451 187 10 13 402 7 446 6.38e-113 338
MS.gene43932.t1 AT2G43840 42.350 451 188 10 13 402 7 446 7.38e-112 335
MS.gene43932.t1 AT1G05675 38.307 449 212 5 13 400 6 450 2.96e-98 301
MS.gene43932.t1 AT1G05680 37.778 450 213 5 13 400 6 450 1.10e-96 297
MS.gene43932.t1 AT2G31750 37.556 450 212 7 13 399 8 451 2.00e-91 283
MS.gene43932.t1 AT2G31750 37.061 456 218 7 13 405 8 457 4.41e-91 283
MS.gene43932.t1 AT2G31790 35.841 452 227 6 13 403 8 457 5.61e-89 277
MS.gene43932.t1 AT3G21560 28.510 463 256 11 13 402 12 472 1.25e-58 199
MS.gene43932.t1 AT4G15490 30.120 332 192 8 9 313 4 322 1.34e-47 169
MS.gene43932.t1 AT4G15480 28.308 325 209 6 1 308 7 324 1.54e-47 169
MS.gene43932.t1 AT4G14090 27.195 467 259 12 1 400 1 453 5.53e-47 167
MS.gene43932.t1 AT2G23260 28.477 453 254 12 13 403 10 454 2.05e-45 163
MS.gene43932.t1 AT4G15500 31.429 315 197 8 13 313 9 318 9.17e-45 162
MS.gene43932.t1 AT2G23250 27.477 444 250 13 22 405 7 438 6.56e-44 159
MS.gene43932.t1 AT1G22400 26.362 459 242 12 13 384 13 462 6.88e-42 154
MS.gene43932.t1 AT2G36970 24.948 477 259 12 13 404 10 472 8.31e-42 154
MS.gene43932.t1 AT1G22370 27.234 470 255 13 13 402 13 475 2.70e-41 152
MS.gene43932.t1 AT1G22380 30.508 354 204 13 13 331 13 359 3.17e-41 152
MS.gene43932.t1 AT2G28080 28.485 330 201 7 17 320 22 342 4.76e-41 152
MS.gene43932.t1 AT1G05530 32.588 313 177 9 13 309 5 299 7.20e-41 151
MS.gene43932.t1 AT1G05530 52.632 76 35 1 327 402 380 454 1.24e-15 79.0
MS.gene43932.t1 AT1G05560 32.686 309 179 10 13 309 5 296 1.64e-39 147
MS.gene43932.t1 AT1G05560 46.429 84 44 1 327 410 377 459 3.59e-14 74.3
MS.gene43932.t1 AT1G05560 32.686 309 179 10 13 309 55 346 3.75e-39 147
MS.gene43932.t1 AT1G05560 46.429 84 44 1 327 410 427 509 3.43e-14 74.7
MS.gene43932.t1 AT1G22360 25.758 462 261 16 13 400 10 463 1.16e-38 145
MS.gene43932.t1 AT2G30140 28.051 467 246 17 9 406 9 454 1.37e-37 142
MS.gene43932.t1 AT1G22360 28.354 328 197 8 13 308 10 331 1.51e-37 142
MS.gene43932.t1 AT1G22340 27.864 323 205 7 13 308 13 334 1.54e-37 142
MS.gene43932.t1 AT2G30140 27.991 468 246 17 9 406 9 455 2.85e-37 141
MS.gene43932.t1 AT1G78270 28.963 328 194 9 13 308 13 333 8.18e-36 137
MS.gene43932.t1 AT4G15550 28.660 321 188 9 13 309 13 316 6.42e-35 135
MS.gene43932.t1 AT3G02100 26.580 459 252 14 13 400 13 457 4.85e-34 132
MS.gene43932.t1 AT2G30150 26.362 459 252 16 13 403 13 453 2.93e-32 127
MS.gene43932.t1 AT3G46670 25.918 463 247 15 13 402 9 448 2.26e-31 124
MS.gene43932.t1 AT2G15480 26.069 491 258 17 5 402 2 480 3.34e-31 124
MS.gene43932.t1 AT2G30150 26.154 455 250 16 17 403 1 437 1.42e-30 122
MS.gene43932.t1 AT1G01420 27.500 480 247 15 3 397 1 464 3.35e-30 122
MS.gene43932.t1 AT1G01420 27.696 473 241 15 10 397 5 461 4.67e-30 121
MS.gene43932.t1 AT2G15490 25.255 491 250 14 11 402 5 477 5.51e-30 121
MS.gene43932.t1 AT2G15480 26.148 501 255 19 5 402 2 490 6.96e-30 121
MS.gene43932.t1 AT2G15490 24.696 494 252 13 11 402 5 480 5.97e-29 118
MS.gene43932.t1 AT4G01070 29.012 324 176 9 13 308 8 305 2.78e-27 111
MS.gene43932.t1 AT4G01070 30.408 319 178 11 13 308 8 305 4.04e-27 113
MS.gene43932.t1 AT1G10400 24.421 475 261 19 12 404 6 464 4.17e-27 113
MS.gene43932.t1 AT3G46650 25.551 454 235 14 13 398 10 428 5.76e-27 112
MS.gene43932.t1 AT5G59590 23.830 470 248 15 13 402 10 449 1.70e-26 110
MS.gene43932.t1 AT5G17050 22.881 472 267 12 9 404 8 458 2.58e-26 110
MS.gene43932.t1 AT5G05870 24.307 469 264 13 9 403 4 455 1.59e-25 108
MS.gene43932.t1 AT5G59580 24.841 471 253 18 13 408 9 453 7.53e-25 106
MS.gene43932.t1 AT1G73880 26.176 489 252 19 2 404 3 468 9.06e-25 106
MS.gene43932.t1 AT5G17040 23.246 456 267 11 11 402 3 439 1.27e-23 102
MS.gene43932.t1 AT2G36760 24.860 358 221 11 4 326 5 349 2.00e-23 102
MS.gene43932.t1 AT4G34131 26.519 362 210 18 5 326 2 347 2.52e-23 102
MS.gene43932.t1 AT3G46660 28.797 316 182 11 14 308 15 308 2.87e-23 101
MS.gene43932.t1 AT1G01390 26.611 357 200 9 10 326 22 356 3.33e-23 102
MS.gene43932.t1 AT1G01390 26.611 357 200 9 10 326 5 339 3.68e-23 101
MS.gene43932.t1 AT5G38010 27.187 320 187 8 13 308 10 307 3.97e-23 101
MS.gene43932.t1 AT5G03490 25.672 335 209 11 13 326 19 334 6.72e-23 100
MS.gene43932.t1 AT4G34135 23.944 355 227 12 5 326 3 347 2.68e-22 99.0
MS.gene43932.t1 AT2G36780 26.257 358 216 14 4 326 5 349 3.49e-22 99.0
MS.gene43932.t1 AT3G46690 26.774 310 197 8 13 308 9 302 6.01e-22 97.8
MS.gene43932.t1 AT1G30530 26.807 332 208 13 13 326 12 326 2.31e-21 96.3
MS.gene43932.t1 AT3G16520 28.936 235 138 9 108 326 113 334 3.20e-21 95.9
MS.gene43932.t1 AT3G16520 28.936 235 138 9 108 326 113 334 3.21e-21 95.5
MS.gene43932.t1 AT3G16520 28.936 235 138 9 108 326 113 334 3.35e-21 95.9
MS.gene43932.t1 AT5G05880 22.737 475 260 17 9 404 4 450 8.29e-21 94.4
MS.gene43932.t1 AT5G49690 26.099 364 221 13 12 349 9 350 1.46e-20 94.0
MS.gene43932.t1 AT2G36770 24.090 357 225 12 4 326 5 349 4.81e-20 92.4
MS.gene43932.t1 AT5G05900 26.019 319 202 11 9 308 4 307 4.83e-20 92.0
MS.gene43932.t1 AT3G46680 26.537 309 199 9 13 308 9 302 6.18e-20 92.0
MS.gene43932.t1 AT1G22370 26.263 297 156 7 164 402 14 305 6.46e-20 90.1
MS.gene43932.t1 AT3G46700 22.863 468 251 18 13 402 9 444 7.70e-20 91.7
MS.gene43932.t1 AT5G26310 27.859 341 208 14 13 333 7 329 1.72e-19 90.9
MS.gene43932.t1 AT3G46720 25.658 456 247 18 14 402 10 440 2.79e-19 89.7
MS.gene43932.t1 AT2G23210 26.715 277 179 11 13 277 10 274 5.64e-19 87.0
MS.gene43932.t1 AT2G36750 25.634 355 219 12 5 326 2 344 1.10e-18 88.2
MS.gene43932.t1 AT5G17030 22.293 471 270 15 9 404 8 457 1.52e-18 87.8
MS.gene43932.t1 AT3G21800 24.198 343 212 9 10 322 2 326 2.14e-18 87.4
MS.gene43932.t1 AT5G53990 21.019 471 270 14 10 406 3 445 2.31e-18 87.0
MS.gene43932.t1 AT4G34138 23.327 493 258 20 10 403 8 479 3.60e-18 86.7
MS.gene43932.t1 AT5G38040 27.760 317 169 12 21 308 18 303 7.50e-18 85.5
MS.gene43932.t1 AT1G51210 25.378 331 210 13 13 326 20 330 8.18e-18 85.5
MS.gene43932.t1 AT2G26480 25.000 320 186 11 13 308 8 297 1.21e-17 85.1
MS.gene43932.t1 AT5G65550 27.841 352 204 16 12 332 8 340 1.22e-17 85.1
MS.gene43932.t1 AT2G36800 24.294 354 217 14 2 324 1 334 1.73e-17 84.7
MS.gene43932.t1 AT5G05860 25.633 316 205 11 6 308 2 300 2.46e-17 84.0
MS.gene43932.t1 AT3G11340 19.868 453 281 12 14 402 10 444 1.02e-16 82.0
MS.gene43932.t1 AT5G66690 25.305 328 201 11 13 319 7 311 1.65e-16 81.6
MS.gene43932.t1 AT5G12890 22.995 374 217 11 10 335 7 357 1.73e-16 81.6
MS.gene43932.t1 AT3G21780 23.344 317 211 8 12 310 3 305 1.81e-16 81.6
MS.gene43932.t1 AT3G53150 24.776 335 206 13 10 312 19 339 3.09e-16 80.9
MS.gene43932.t1 AT3G21790 23.754 341 211 12 14 325 5 325 4.53e-16 80.5
MS.gene43932.t1 AT3G55710 27.129 317 191 12 14 308 9 307 9.77e-16 79.3
MS.gene43932.t1 AT3G53160 25.843 356 210 16 9 326 4 343 1.05e-15 79.3
MS.gene43932.t1 AT5G05890 24.684 316 208 9 9 308 4 305 1.16e-15 79.0
MS.gene43932.t1 AT2G29710 25.146 342 218 13 11 326 3 332 3.46e-15 77.8
MS.gene43932.t1 AT3G50740 25.926 351 207 13 13 333 7 334 6.18e-15 77.0
MS.gene43932.t1 AT2G36790 25.714 350 218 14 1 324 1 334 6.96e-15 76.6
MS.gene43932.t1 AT3G21760 22.703 370 219 12 12 338 3 348 7.91e-15 76.6
MS.gene43932.t1 AT5G54010 22.353 340 218 10 9 326 2 317 2.27e-14 75.1
MS.gene43932.t1 AT2G29730 24.340 341 218 13 10 323 2 329 2.63e-14 74.7
MS.gene43932.t1 AT1G64910 20.296 473 275 15 9 407 2 446 3.28e-14 74.7
MS.gene43932.t1 AT5G37950 24.454 229 142 4 92 308 70 279 7.03e-14 72.8
MS.gene43932.t1 AT3G21750 22.689 357 232 10 12 347 3 336 7.59e-14 73.6
MS.gene43932.t1 AT2G29750 24.444 360 212 14 9 326 4 345 1.02e-13 73.2
MS.gene43932.t1 AT3G55700 22.436 468 260 18 13 402 8 450 2.19e-13 72.0
MS.gene43932.t1 AT5G37950 25.764 229 133 7 92 308 70 273 2.20e-13 71.2
MS.gene43932.t1 AT2G29740 24.022 358 210 10 9 323 4 342 2.31e-13 72.0
MS.gene43932.t1 AT1G64920 22.599 354 224 13 9 341 2 326 9.08e-13 70.1
MS.gene43932.t1 AT3G29630 22.833 473 256 17 13 406 6 448 9.65e-13 70.1
MS.gene43932.t1 AT4G36770 26.061 330 181 12 11 308 2 300 1.04e-12 70.1
MS.gene43932.t1 AT3G29630 23.830 470 229 17 13 406 6 422 5.36e-12 67.8
MS.gene43932.t1 AT4G09500 22.054 331 216 10 13 326 6 311 6.05e-12 67.4
MS.gene43932.t1 AT2G15490 25.824 182 110 4 11 168 5 185 9.89e-12 65.5
MS.gene43932.t1 AT2G22930 21.408 341 206 12 13 326 6 311 4.40e-11 64.7

Find 81 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGTATTTAGAGGAAATT+TGG 0.112057 5.4:-25401467 MS.gene43932:CDS
TTAATGCAATCTTCACTTAA+TGG 0.155045 5.4:+25401837 None:intergenic
GCTAAACAACATGGGATTTA+TGG 0.227646 5.4:-25402407 MS.gene43932:CDS
AAGGGTATGGAGCAAATTTA+TGG 0.263548 5.4:-25401863 MS.gene43932:CDS
TAAGTGAAGATTGCATTAAT+TGG 0.270840 5.4:-25401833 MS.gene43932:CDS
TGAAAGTTACCCTGCTTATA+TGG 0.273177 5.4:-25402231 MS.gene43932:CDS
AAAGTGAAGTGAATTTCTTA+TGG 0.295838 5.4:-25401710 MS.gene43932:CDS
GTTCCTTCTGCTTACTTAGA+TGG 0.303927 5.4:-25401903 MS.gene43932:CDS
GCCAGATGCAAAGTATTTAG+AGG 0.322912 5.4:-25401475 MS.gene43932:intron
AATACATTTGAAGCTTTAGA+AGG 0.325832 5.4:-25402155 MS.gene43932:CDS
GAACATTGTTGTTGTAGTTT+TGG 0.330597 5.4:+25402762 None:intergenic
GAGAAAGAGTTCAACATTGT+TGG 0.342656 5.4:+25402550 None:intergenic
ATATAAGCAGGGTAACTTTC+AGG 0.345186 5.4:+25402233 None:intergenic
CAAATTTAAATCAAGCTGAT+TGG 0.345604 5.4:-25402187 MS.gene43932:CDS
AATGAGGTTTGAGAGTGTTT+TGG 0.357948 5.4:+25402505 None:intergenic
ATGTGTCCTTGTGCTGGGTA+TGG 0.359401 5.4:+25402725 None:intergenic
AAGTGAAGTGAATTTCTTAT+GGG 0.361840 5.4:-25401709 MS.gene43932:CDS
AAAGATTTGATCAAAGAAAA+AGG 0.363384 5.4:-25401645 MS.gene43932:intron
ATCAAATCTTTGTACCCCTT+TGG 0.366273 5.4:+25401657 None:intergenic
AAAGAAGTGAAGTGATTAGA+AGG 0.376196 5.4:-25401356 MS.gene43932:CDS
AGAATTTATGTTGAGTTTGA+AGG 0.376290 5.4:-25401394 MS.gene43932:CDS
GGACTAATGTGTCCTTGTGC+TGG 0.381138 5.4:+25402719 None:intergenic
TTAGAGGAAATTTGGGAAGT+TGG 0.386537 5.4:-25401459 MS.gene43932:CDS
TCTGATGGGTTCGACGAATC+CGG 0.389070 5.4:-25402584 MS.gene43932:CDS
CAAATAGAAGAGCTGGCTTT+GGG 0.400000 5.4:-25401741 MS.gene43932:CDS
ACAAATAGAAGAGCTGGCTT+TGG 0.401874 5.4:-25401742 MS.gene43932:CDS
AAAGTATTTAGAGGAAATTT+GGG 0.403427 5.4:-25401466 MS.gene43932:CDS
TCAGTAGTGTATATCTCCTT+TGG 0.417158 5.4:-25401789 MS.gene43932:CDS
ATCAAAGGCAATTCATCAAC+AGG 0.418143 5.4:+25402311 None:intergenic
TGTGTCCTTGTGCTGGGTAT+GGG 0.433513 5.4:+25402726 None:intergenic
ATGTTTCCTGCTAAATTGAT+TGG 0.435113 5.4:-25401933 MS.gene43932:CDS
TGCTAAATTGATTGGTCCAA+TGG 0.436681 5.4:-25401925 MS.gene43932:CDS
CTCAATTCATTCAAAACCAA+TGG 0.448142 5.4:-25402530 MS.gene43932:CDS
GTATATCTCCTTTGGAAGCA+TGG 0.460159 5.4:-25401781 MS.gene43932:CDS
GACTAATGTGTCCTTGTGCT+GGG 0.469831 5.4:+25402720 None:intergenic
TTTGTATTATAGGTTGTGAA+AGG 0.472117 5.4:-25401966 MS.gene43932:intron
ATTGGTTCGATAGAGATGTT+TGG 0.472966 5.4:+25402608 None:intergenic
TTTGACGAACACAAATAAGA+TGG 0.474109 5.4:-25401247 MS.gene43932:CDS
TCAGGAAATCTTATAAAACT+TGG 0.478491 5.4:+25402251 None:intergenic
AACTTCATAGCCATATAAGC+AGG 0.478952 5.4:+25402221 None:intergenic
TCGTCGAACCCATCAGAGAT+TGG 0.480355 5.4:+25402590 None:intergenic
ATTGGACCAATCAATTTAGC+AGG 0.490090 5.4:+25401927 None:intergenic
ATCAGAACAAATAGAAGAGC+TGG 0.496142 5.4:-25401748 MS.gene43932:CDS
TCATACACAATGCAAGTGAT+TGG 0.499867 5.4:+25402458 None:intergenic
AGGCCAAAAGAGGATGAAAA+TGG 0.504839 5.4:-25401432 MS.gene43932:CDS
ATCAAAGGAGACAAAGGGTA+TGG 0.516111 5.4:-25401876 MS.gene43932:CDS
TTAGAAGGAATGCTAGTGAA+TGG 0.522513 5.4:-25401341 MS.gene43932:CDS
GAATTGCCTTTGATTGTACC+TGG 0.526634 5.4:-25402302 MS.gene43932:CDS
TTGTATTATAGGTTGTGAAA+GGG 0.528055 5.4:-25401965 MS.gene43932:intron
GGAAGATCTCTAGAATTCAA+TGG 0.531119 5.4:+25402272 None:intergenic
TCTATCGAACCAATCTCTGA+TGG 0.531123 5.4:-25402599 MS.gene43932:CDS
CTTGATGTTGCTAAACAACA+TGG 0.541379 5.4:-25402416 MS.gene43932:CDS
TGCTAGTGAATGGAAGAAGT+TGG 0.547570 5.4:-25401331 MS.gene43932:CDS
TACTTAGATGGAAGAATCAA+AGG 0.552258 5.4:-25401891 MS.gene43932:CDS
GAGCAAGGGAAGTTACCAAA+GGG 0.552313 5.4:-25401672 MS.gene43932:CDS
GGAAGAATCAAAGGAGACAA+AGG 0.555117 5.4:-25401882 MS.gene43932:CDS
AGAGATGCTGTTTGTGAAGG+AGG 0.559298 5.4:-25401306 MS.gene43932:CDS
AAGTAAGCAGAAGGAACCAT+TGG 0.560336 5.4:+25401909 None:intergenic
GAAGAATCAAAGGAGACAAA+GGG 0.563073 5.4:-25401881 MS.gene43932:CDS
GGAAGACCAGGTACAATCAA+AGG 0.565814 5.4:+25402296 None:intergenic
GTTGAGTTTGAAGGTTGTGA+TGG 0.568417 5.4:-25401385 MS.gene43932:CDS
AGTTTGAAGGTTGTGATGGA+AGG 0.569295 5.4:-25401381 MS.gene43932:CDS
AGTTGGTGTGAGGCCAAAAG+AGG 0.574075 5.4:-25401442 MS.gene43932:CDS
GAATTCAATGGAGGAAGACC+AGG 0.574734 5.4:+25402284 None:intergenic
CTATCGAACCAATCTCTGAT+GGG 0.575365 5.4:-25402598 MS.gene43932:CDS
ATTTGAAGCTTTAGAAGGAG+AGG 0.576940 5.4:-25402150 MS.gene43932:intron
CTTCCATCTAAGTAAGCAGA+AGG 0.580606 5.4:+25401900 None:intergenic
GTAATGGGTTGTTGCAAATG+TGG 0.584893 5.4:+25402652 None:intergenic
TTGACGAACACAAATAAGAT+GGG 0.586406 5.4:-25401246 MS.gene43932:CDS
GCTAGAGATGCTGTTTGTGA+AGG 0.586922 5.4:-25401309 MS.gene43932:CDS
TAAAGAAACCATGCTTCCAA+AGG 0.612065 5.4:+25401773 None:intergenic
ACTTCATAGCCATATAAGCA+GGG 0.620841 5.4:+25402222 None:intergenic
GGAGCAAGGGAAGTTACCAA+AGG 0.623368 5.4:-25401673 MS.gene43932:CDS
ATATACACTACTGATTGTGA+TGG 0.642138 5.4:+25401798 None:intergenic
TTGATGTTGCTAAACAACAT+GGG 0.649754 5.4:-25402415 MS.gene43932:CDS
AAATTTGGGAAGTTGGTGTG+AGG 0.651908 5.4:-25401452 MS.gene43932:CDS
AAGATGGGAAATGATTTGAG+TGG 0.669554 5.4:-25401231 MS.gene43932:CDS
GTGATCCCATACCCAGCACA+AGG 0.680626 5.4:-25402731 MS.gene43932:CDS
TTCGATAGAGATGTTTGGTG+CGG 0.686979 5.4:+25402613 None:intergenic
AGATCTCTAGAATTCAATGG+AGG 0.691278 5.4:+25402275 None:intergenic
AGCAAGGGAAGTTACCAAAG+GGG 0.729691 5.4:-25401671 MS.gene43932:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAATAAAATATTTGATATT+TGG - chr5.4:25401911-25401930 MS.gene43932:CDS 10.0%
!!! CAATTTTCTTTTTGTATTAT+AGG - chr5.4:25402024-25402043 MS.gene43932:intron 15.0%
!! AAAATTCATAAGAGAAAGAT+TGG + chr5.4:25401980-25401999 None:intergenic 20.0%
!! AAAGATTTGATCAAAGAAAA+AGG - chr5.4:25402355-25402374 MS.gene43932:CDS 20.0%
!! TCGATAAAGATTAATGTATT+TGG + chr5.4:25401957-25401976 None:intergenic 20.0%
!!! AAAAAGGTATAATTGTAACA+TGG - chr5.4:25402371-25402390 MS.gene43932:CDS 20.0%
!!! AAACTAATCTTTTTGAGAAT+TGG + chr5.4:25401313-25401332 None:intergenic 20.0%
!!! AAAGTATTTAGAGGAAATTT+GGG - chr5.4:25402534-25402553 MS.gene43932:CDS 20.0%
!!! CTTTCTCTTATGAATTTTAA+CGG - chr5.4:25401982-25402001 MS.gene43932:intron 20.0%
!!! TCAAAAAGATTAGTTTCAAA+AGG - chr5.4:25401317-25401336 MS.gene43932:CDS 20.0%
! AAAGTGAAGTGAATTTCTTA+TGG - chr5.4:25402290-25402309 MS.gene43932:CDS 25.0%
! AAGTGAAGTGAATTTCTTAT+GGG - chr5.4:25402291-25402310 MS.gene43932:CDS 25.0%
! AGAATTTATGTTGAGTTTGA+AGG - chr5.4:25402606-25402625 MS.gene43932:CDS 25.0%
! CAAATTTAAATCAAGCTGAT+TGG - chr5.4:25401813-25401832 MS.gene43932:CDS 25.0%
! TAAGTGAAGATTGCATTAAT+TGG - chr5.4:25402167-25402186 MS.gene43932:CDS 25.0%
! TCAGGAAATCTTATAAAACT+TGG + chr5.4:25401752-25401771 None:intergenic 25.0%
! TTAATGCAATCTTCACTTAA+TGG + chr5.4:25402166-25402185 None:intergenic 25.0%
! TTGTATTATAGGTTGTGAAA+GGG - chr5.4:25402035-25402054 MS.gene43932:intron 25.0%
! TTTGTATTATAGGTTGTGAA+AGG - chr5.4:25402034-25402053 MS.gene43932:intron 25.0%
!! CAAAGTATTTAGAGGAAATT+TGG - chr5.4:25402533-25402552 MS.gene43932:CDS 25.0%
!! GATAGATTTTACAGTGTAAT+GGG + chr5.4:25401366-25401385 None:intergenic 25.0%
!! GTATGATTCTTTTCTTACTT+GGG - chr5.4:25401559-25401578 MS.gene43932:intron 25.0%
!! TGATAGATTTTACAGTGTAA+TGG + chr5.4:25401367-25401386 None:intergenic 25.0%
!! TGATATTTGGTTGATGTATT+TGG - chr5.4:25401924-25401943 MS.gene43932:CDS 25.0%
!! TGTATGATTCTTTTCTTACT+TGG - chr5.4:25401558-25401577 MS.gene43932:intron 25.0%
!!! AATACATTTGAAGCTTTAGA+AGG - chr5.4:25401845-25401864 MS.gene43932:CDS 25.0%
!!! ATTTTTTGTCGTATACATCA+TGG - chr5.4:25401653-25401672 MS.gene43932:CDS 25.0%
!!! TTTTTTGGTGTTTTTGAATG+AGG + chr5.4:25401514-25401533 None:intergenic 25.0%
AAAGAAGTGAAGTGATTAGA+AGG - chr5.4:25402644-25402663 MS.gene43932:CDS 30.0%
ATGTTTCCTGCTAAATTGAT+TGG - chr5.4:25402067-25402086 MS.gene43932:intron 30.0%
CTCAATTCATTCAAAACCAA+TGG - chr5.4:25401470-25401489 MS.gene43932:CDS 30.0%
GTGTAACCAACTTGAATTAT+TGG - chr5.4:25402393-25402412 MS.gene43932:CDS 30.0%
TACTTAGATGGAAGAATCAA+AGG - chr5.4:25402109-25402128 MS.gene43932:intron 30.0%
TTGACGAACACAAATAAGAT+GGG - chr5.4:25402754-25402773 MS.gene43932:CDS 30.0%
TTGATGTTGCTAAACAACAT+GGG - chr5.4:25401585-25401604 MS.gene43932:intron 30.0%
TTTGACGAACACAAATAAGA+TGG - chr5.4:25402753-25402772 MS.gene43932:CDS 30.0%
! ATATACACTACTGATTGTGA+TGG + chr5.4:25402205-25402224 None:intergenic 30.0%
!! CTTTTTGAGAATTGGATTAG+TGG + chr5.4:25401305-25401324 None:intergenic 30.0%
!! GAACATTGTTGTTGTAGTTT+TGG + chr5.4:25401241-25401260 None:intergenic 30.0%
!!! TGATTGGTGTTGAAGTTTTT+TGG + chr5.4:25401529-25401548 None:intergenic 30.0%
AACTTCATAGCCATATAAGC+AGG + chr5.4:25401782-25401801 None:intergenic 35.0%
AAGATGGGAAATGATTTGAG+TGG - chr5.4:25402769-25402788 MS.gene43932:CDS 35.0%
ACTTCATAGCCATATAAGCA+GGG + chr5.4:25401781-25401800 None:intergenic 35.0%
ATATAAGCAGGGTAACTTTC+AGG + chr5.4:25401770-25401789 None:intergenic 35.0%
ATCAAAGGCAATTCATCAAC+AGG + chr5.4:25401692-25401711 None:intergenic 35.0%
ATCAAATCTTTGTACCCCTT+TGG + chr5.4:25402346-25402365 None:intergenic 35.0%
ATCAGAACAAATAGAAGAGC+TGG - chr5.4:25402252-25402271 MS.gene43932:CDS 35.0%
ATTGGACCAATCAATTTAGC+AGG + chr5.4:25402076-25402095 None:intergenic 35.0%
CATGTGCCAATAATTCAAGT+TGG + chr5.4:25402402-25402421 None:intergenic 35.0%
CTTGATGTTGCTAAACAACA+TGG - chr5.4:25401584-25401603 MS.gene43932:intron 35.0%
GAAGAATCAAAGGAGACAAA+GGG - chr5.4:25402119-25402138 MS.gene43932:intron 35.0%
GAGAAAGAGTTCAACATTGT+TGG + chr5.4:25401453-25401472 None:intergenic 35.0%
GCTAAACAACATGGGATTTA+TGG - chr5.4:25401593-25401612 MS.gene43932:intron 35.0%
TAAAGAAACCATGCTTCCAA+AGG + chr5.4:25402230-25402249 None:intergenic 35.0%
TCAGTAGTGTATATCTCCTT+TGG - chr5.4:25402211-25402230 MS.gene43932:CDS 35.0%
TCATACACAATGCAAGTGAT+TGG + chr5.4:25401545-25401564 None:intergenic 35.0%
TCCTCTAAATACTTTGCATC+TGG + chr5.4:25402529-25402548 None:intergenic 35.0%
TGAAAGTTACCCTGCTTATA+TGG - chr5.4:25401769-25401788 MS.gene43932:CDS 35.0%
TTAGAAGGAATGCTAGTGAA+TGG - chr5.4:25402659-25402678 MS.gene43932:CDS 35.0%
TTAGAGGAAATTTGGGAAGT+TGG - chr5.4:25402541-25402560 MS.gene43932:CDS 35.0%
! AAGGGTATGGAGCAAATTTA+TGG - chr5.4:25402137-25402156 MS.gene43932:intron 35.0%
! ACACCATTTTCATCCTCTTT+TGG + chr5.4:25402574-25402593 None:intergenic 35.0%
! TGCTAAATTGATTGGTCCAA+TGG - chr5.4:25402075-25402094 MS.gene43932:intron 35.0%
!! AGATCTCTAGAATTCAATGG+AGG + chr5.4:25401728-25401747 None:intergenic 35.0%
!! ATTGGTTCGATAGAGATGTT+TGG + chr5.4:25401395-25401414 None:intergenic 35.0%
!! ATTGTTGGCTTGTGAAAAAC+CGG + chr5.4:25401438-25401457 None:intergenic 35.0%
!! ATTTGAAGCTTTAGAAGGAG+AGG - chr5.4:25401850-25401869 MS.gene43932:CDS 35.0%
!! GGAAGATCTCTAGAATTCAA+TGG + chr5.4:25401731-25401750 None:intergenic 35.0%
!!! AATGAGGTTTGAGAGTGTTT+TGG + chr5.4:25401498-25401517 None:intergenic 35.0%
!!! CTTATGGGTTTTAAGAGAGT+CGG - chr5.4:25402306-25402325 MS.gene43932:CDS 35.0%
AAGTAAGCAGAAGGAACCAT+TGG + chr5.4:25402094-25402113 None:intergenic 40.0%
ACACTTGAGAGTCTAAGTCT+TGG - chr5.4:25402463-25402482 MS.gene43932:CDS 40.0%
AGGCCAAAAGAGGATGAAAA+TGG - chr5.4:25402568-25402587 MS.gene43932:CDS 40.0%
ATCAAAGGAGACAAAGGGTA+TGG - chr5.4:25402124-25402143 MS.gene43932:intron 40.0%
CTATCGAACCAATCTCTGAT+GGG - chr5.4:25401402-25401421 MS.gene43932:CDS 40.0%
CTTCCATCTAAGTAAGCAGA+AGG + chr5.4:25402103-25402122 None:intergenic 40.0%
GAATTGCCTTTGATTGTACC+TGG - chr5.4:25401698-25401717 MS.gene43932:CDS 40.0%
GGAAGAATCAAAGGAGACAA+AGG - chr5.4:25402118-25402137 MS.gene43932:intron 40.0%
GTTCCTTCTGCTTACTTAGA+TGG - chr5.4:25402097-25402116 MS.gene43932:intron 40.0%
GTTGAGTTTGAAGGTTGTGA+TGG - chr5.4:25402615-25402634 MS.gene43932:CDS 40.0%
TCTATCGAACCAATCTCTGA+TGG - chr5.4:25401401-25401420 MS.gene43932:CDS 40.0%
TGCTAGTGAATGGAAGAAGT+TGG - chr5.4:25402669-25402688 MS.gene43932:CDS 40.0%
TGTTGTGTGTTTGCCACAAT+GGG - chr5.4:25402492-25402511 MS.gene43932:CDS 40.0%
TTATTGGCACATGATGCTGT+TGG - chr5.4:25402409-25402428 MS.gene43932:CDS 40.0%
! ACAAATAGAAGAGCTGGCTT+TGG - chr5.4:25402258-25402277 MS.gene43932:CDS 40.0%
! AGTTTGAAGGTTGTGATGGA+AGG - chr5.4:25402619-25402638 MS.gene43932:CDS 40.0%
! GCCAGATGCAAAGTATTTAG+AGG - chr5.4:25402525-25402544 MS.gene43932:CDS 40.0%
! GGATGTTTTGTGACACATTG+TGG - chr5.4:25402430-25402449 MS.gene43932:CDS 40.0%
! GTATATCTCCTTTGGAAGCA+TGG - chr5.4:25402219-25402238 MS.gene43932:CDS 40.0%
! GTTTTGTGACACATTGTGGT+TGG - chr5.4:25402434-25402453 MS.gene43932:CDS 40.0%
! TTCGATAGAGATGTTTGGTG+CGG + chr5.4:25401390-25401409 None:intergenic 40.0%
!! AAATTTGGGAAGTTGGTGTG+AGG - chr5.4:25402548-25402567 MS.gene43932:CDS 40.0%
!! CAAATAGAAGAGCTGGCTTT+GGG - chr5.4:25402259-25402278 MS.gene43932:CDS 40.0%
!! GTAATGGGTTGTTGCAAATG+TGG + chr5.4:25401351-25401370 None:intergenic 40.0%
!! TTTTAAGAGAGTCGGAGCAA+GGG - chr5.4:25402314-25402333 MS.gene43932:CDS 40.0%
!!! TGAGAGTGTTTTGGAACCAT+TGG + chr5.4:25401489-25401508 None:intergenic 40.0%
AGCAAGGGAAGTTACCAAAG+GGG - chr5.4:25402329-25402348 MS.gene43932:CDS 45.0%
CATTGTGGCAAACACACAAC+AGG + chr5.4:25402493-25402512 None:intergenic 45.0%
CTGTTGTGTGTTTGCCACAA+TGG - chr5.4:25402491-25402510 MS.gene43932:CDS 45.0%
GAATTCAATGGAGGAAGACC+AGG + chr5.4:25401719-25401738 None:intergenic 45.0%
GACTAATGTGTCCTTGTGCT+GGG + chr5.4:25401283-25401302 None:intergenic 45.0%
GAGCAAGGGAAGTTACCAAA+GGG - chr5.4:25402328-25402347 MS.gene43932:CDS 45.0%
GGAAGACCAGGTACAATCAA+AGG + chr5.4:25401707-25401726 None:intergenic 45.0%
! AGAGATGCTGTTTGTGAAGG+AGG - chr5.4:25402694-25402713 MS.gene43932:CDS 45.0%
! GCTAGAGATGCTGTTTGTGA+AGG - chr5.4:25402691-25402710 MS.gene43932:CDS 45.0%
!!! GTTTTAAGAGAGTCGGAGCA+AGG - chr5.4:25402313-25402332 MS.gene43932:CDS 45.0%
ATGTGTCCTTGTGCTGGGTA+TGG + chr5.4:25401278-25401297 None:intergenic 50.0%
GGACTAATGTGTCCTTGTGC+TGG + chr5.4:25401284-25401303 None:intergenic 50.0%
GGAGCAAGGGAAGTTACCAA+AGG - chr5.4:25402327-25402346 MS.gene43932:CDS 50.0%
GGCAATTGATCAGCCCATTG+TGG + chr5.4:25402508-25402527 None:intergenic 50.0%
TCGTCGAACCCATCAGAGAT+TGG + chr5.4:25401413-25401432 None:intergenic 50.0%
TGTGTCCTTGTGCTGGGTAT+GGG + chr5.4:25401277-25401296 None:intergenic 50.0%
! AGTTGGTGTGAGGCCAAAAG+AGG - chr5.4:25402558-25402577 MS.gene43932:CDS 50.0%
!! TCTGATGGGTTCGACGAATC+CGG - chr5.4:25401416-25401435 MS.gene43932:CDS 50.0%
GTGATCCCATACCCAGCACA+AGG - chr5.4:25401269-25401288 MS.gene43932:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 25401224 25402798 25401224 ID=MS.gene43932
chr5.4 mRNA 25401224 25402798 25401224 ID=MS.gene43932.t1;Parent=MS.gene43932
chr5.4 exon 25402151 25402798 25402151 ID=MS.gene43932.t1.exon1;Parent=MS.gene43932.t1
chr5.4 CDS 25402151 25402798 25402151 ID=cds.MS.gene43932.t1;Parent=MS.gene43932.t1
chr5.4 exon 25401646 25401976 25401646 ID=MS.gene43932.t1.exon2;Parent=MS.gene43932.t1
chr5.4 CDS 25401646 25401976 25401646 ID=cds.MS.gene43932.t1;Parent=MS.gene43932.t1
chr5.4 exon 25401224 25401492 25401224 ID=MS.gene43932.t1.exon3;Parent=MS.gene43932.t1
chr5.4 CDS 25401224 25401492 25401224 ID=cds.MS.gene43932.t1;Parent=MS.gene43932.t1
Gene Sequence

>MS.gene43932

ATGGTGGTACAGAGCCAAAACTACAACAACAATGTTCATGTCTTAGTGATCCCATACCCAGCACAAGGACACATTAGTCCACTAATCCAATTCTCAAAAAGATTAGTTTCAAAAGGCATCAAAACCACATTTGCAACAACCCATTACACTGTAAAATCTATCACCGCACCAAACATCTCTATCGAACCAATCTCTGATGGGTTCGACGAATCCGGTTTTTCACAAGCCAACAATGTTGAACTCTTTCTCAATTCATTCAAAACCAATGGTTCCAAAACACTCTCAAACCTCATTCAAAAACACCAAAAAACTTCAACACCAATCACTTGCATTGTGTATGATTCTTTTCTTACTTGGGCACTTGATGTTGCTAAACAACATGGGATTTATGGTGCTTCTTTTTTCACTAATTCAGCTGCTGTTTGTAACATTTTTTGTCGTATACATCATGGTTTGATTAAAACTCCTGTTGATGAATTGCCTTTGATTGTACCTGGTCTTCCTCCATTGAATTCTAGAGATCTTCCAAGTTTTATAAGATTTCCTGAAAGTTACCCTGCTTATATGGCTATGAAGTTAAATCAATTCTCAAATTTAAATCAAGCTGATTGGATGTTTGTCAATACATTTGAAGCTTTAGAAGGAGAGGTACAAATTCTTAGCATTTTATTATTCATTTTTCATTCATGAATAAAATATTTGATATTTGGTTGATGTATTTGGTCTCAAACCAAATACATTAATCTTTATCGACCAATCTTTCTCTTATGAATTTTAACGGACAATTAATTGATGATTAACAATTTTCTTTTTGTATTATAGGTTGTGAAAGGGCTAACTGAGATGTTTCCTGCTAAATTGATTGGTCCAATGGTTCCTTCTGCTTACTTAGATGGAAGAATCAAAGGAGACAAAGGGTATGGAGCAAATTTATGGAAGCCATTAAGTGAAGATTGCATTAATTGGTTAAATGCAAAGCCATCACAATCAGTAGTGTATATCTCCTTTGGAAGCATGGTTTCTTTAACATCAGAACAAATAGAAGAGCTGGCTTTGGGATTAAAAGAAAGTGAAGTGAATTTCTTATGGGTTTTAAGAGAGTCGGAGCAAGGGAAGTTACCAAAGGGGTACAAAGATTTGATCAAAGAAAAAGGTATAATTGTAACATGGTGTAACCAACTTGAATTATTGGCACATGATGCTGTTGGATGTTTTGTGACACATTGTGGTTGGAATTCGACACTTGAGAGTCTAAGTCTTGGTGTTCCTGTTGTGTGTTTGCCACAATGGGCTGATCAATTGCCAGATGCAAAGTATTTAGAGGAAATTTGGGAAGTTGGTGTGAGGCCAAAAGAGGATGAAAATGGTGTTGTGAAGAGAGAAGAATTTATGTTGAGTTTGAAGGTTGTGATGGAAGGTGAAAGAAGTGAAGTGATTAGAAGGAATGCTAGTGAATGGAAGAAGTTGGCTAGAGATGCTGTTTGTGAAGGAGGTAGCTCTGATAAGAATATTAATGAGTTTGTGAATCATTTGACGAACACAAATAAGATGGGAAATGATTTGAGTGGTTATTAG
Protein sequence

>MS.gene43932.t1

MVVQSQNYNNNVHVLVIPYPAQGHISPLIQFSKRLVSKGIKTTFATTHYTVKSITAPNISIEPISDGFDESGFSQANNVELFLNSFKTNGSKTLSNLIQKHQKTSTPITCIVYDSFLTWALDVAKQHGIYGASFFTNSAAVCNIFCRIHHGLIKTPVDELPLIVPGLPPLNSRDLPSFIRFPESYPAYMAMKLNQFSNLNQADWMFVNTFEALEGEVVKGLTEMFPAKLIGPMVPSAYLDGRIKGDKGYGANLWKPLSEDCINWLNAKPSQSVVYISFGSMVSLTSEQIEELALGLKESEVNFLWVLRESEQGKLPKGYKDLIKEKDAKYLEEIWEVGVRPKEDENGVVKREEFMLSLKVVMEGERSEVIRRNASEWKKLARDAVCEGGSSDKNINEFVNHLTNTNKMGNDLSGY