AlfalfaGEDB | MS.gene44270

M. sativa cultivar XinJiangDaYe / MS.gene44270

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049404	MS.gene44270	0.804676	1.93E-49	-1.69E-46
MS.gene049850	MS.gene44270	0.83324	5.97E-56	-1.69E-46
MS.gene049873	MS.gene44270	0.806371	8.50E-50	-1.69E-46
MS.gene050020	MS.gene44270	0.801936	7.12E-49	-1.69E-46
MS.gene050156	MS.gene44270	0.807051	6.11E-50	-1.69E-46
MS.gene05157	MS.gene44270	0.802285	6.03E-49	-1.69E-46
MS.gene051594	MS.gene44270	0.812296	4.55E-51	-1.69E-46
MS.gene051719	MS.gene44270	0.802435	5.62E-49	-1.69E-46
MS.gene051720	MS.gene44270	0.811546	6.63E-51	-1.69E-46
MS.gene051744	MS.gene44270	0.802096	6.60E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Find 7 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAACATCAAGTTCCAGAAT+TGG	0.346345	5.4:+22771510	None:intergenic
ATAAAAGAAGAACATGGGTA+AGG	0.558560	5.4:-22772633	None:intergenic
ATCAAGTTCCAGAATTGGAT+TGG	0.469272	5.4:+22771515	None:intergenic
GAAGATGATGAATATCACCA+TGG	0.681493	5.4:-22772354	MS.gene44270:CDS
GTTATTGCAGGAAAGTTGAA+TGG	0.435756	5.4:-22771582	MS.gene44270:intron
GTTATTGCAGGAAAGTTGAA+TGG	0.435756	5.4:-22772080	MS.gene44270:intron
TCATGTAACCAATCCAATTC+TGG	0.330330	5.4:-22771523	MS.gene44270:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGACATCCTTAGAAACAA+AGG	-	chr5.4:22772295-22772314	MS.gene44270:intron	30.0%
AAAGGGGAAAACAATAAAGA+TGG	-	chr5.4:22771872-22771891	MS.gene44270:intron	30.0%
AAGACATCCTTAGAAACAAA+GGG	-	chr5.4:22772296-22772315	MS.gene44270:intron	30.0%
ACAAAAAAGGAGTTTAATGG+TGG	-	chr5.4:22772417-22772436	MS.gene44270:intron	30.0%
TGATCTACAAATGTTATTGC+AGG	-	chr5.4:22772019-22772038	MS.gene44270:intron	30.0%
TTTATCTGTCCAACAAACAA+AGG	+	chr5.4:22771725-22771744	None:intergenic	30.0%
AAGATTAGAAAAAGGAGGAG+AGG	+	chr5.4:22771966-22771985	None:intergenic	35.0%
AGAACATCAAGTTCCAGAAT+TGG	+	chr5.4:22772604-22772623	None:intergenic	35.0%
ATCAAGTTCCAGAATTGGAT+TGG	+	chr5.4:22772599-22772618	None:intergenic	35.0%
CAAAAAAGATAAGGATGCTG+AGG	+	chr5.4:22772499-22772518	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	22771491	22772642	22771491	ID=MS.gene44270
chr5.4	mRNA	22771491	22772642	22771491	ID=MS.gene44270.t1;Parent=MS.gene44270
chr5.4	exon	22772634	22772642	22772634	ID=MS.gene44270.t1.exon1;Parent=MS.gene44270.t1
chr5.4	CDS	22772634	22772642	22772634	ID=cds.MS.gene44270.t1;Parent=MS.gene44270.t1
chr5.4	exon	22772350	22772393	22772350	ID=MS.gene44270.t1.exon2;Parent=MS.gene44270.t1
chr5.4	CDS	22772350	22772393	22772350	ID=cds.MS.gene44270.t1;Parent=MS.gene44270.t1
chr5.4	exon	22772034	22772092	22772034	ID=MS.gene44270.t1.exon3;Parent=MS.gene44270.t1
chr5.4	CDS	22772034	22772092	22772034	ID=cds.MS.gene44270.t1;Parent=MS.gene44270.t1
chr5.4	exon	22771491	22771594	22771491	ID=MS.gene44270.t1.exon4;Parent=MS.gene44270.t1
chr5.4	CDS	22771491	22771594	22771491	ID=cds.MS.gene44270.t1;Parent=MS.gene44270.t1

Gene Sequence

>MS.gene44270

ATGGGTAAGGTGAACTCTTTTTCCTTTGTAAAATTGTCTTCATTTTTTTTATGTCCTTCATATCATCATATTAAACTAAGTTTACTTTTTTCTTCAGCTGCATAACATGGCAAATACCAAAAATCATTCACATCCAAACTATAATAAGTAGATTAATACAAATCTATAATAAAGTTTTACACTATACTCAATCTTCTTCAAATATATTGATGTTCTTGCACAACAATATTTCCTTTGTTTGTTGGACAGATAAATAGACAAGAAATGAAGATGATGAATATCACCATGGAAGTGTAAGAAGGAAAAAAGCACGAGAAAATAAAGATCAAAAGAAGTAGCAATCTTGTCTGTTATGTTTTTATGGAAGAATCATTGAATATAAAAGGGGAAAACAATAAAGATGGAGAAGAACCAACTTATGAATTTATCAGAAATTATTTGTGGAGAAGAACTTTTCATTATCTAACATGTACCTCTCCTCCTTTTTCTAATCTTCATTATTTGTATTTATCTTCAACGGCAATTTTTTGATCTACAAATGTTATTGCAGGAAAGTTGAATGGAGTTCTTGTCTCATCAGCAAACTACAAACAAACAAAGAAAACATCAGTAAGTAAATGATGAGAATTACTAATAAGTTTAGTACATAAATCCTCAACAAAATAAATGACACATTTAAGTATTAATTTTTTGCTGGAAATGATGAATTAGTGTCTTGTATTTGTATGTTGCTAATAAAATTGAAAATATGATATGTTGCAGGAAAGTCAATTGATGTTCTTGTCACTTCAACAAACTACAAAGAAAGACATCCTTAGAAACAAAGGGAAGAGTTTGATTAGTATATGTTTTCTTATGTGATTATATACTGTTATGAAGAAATAAAGAAAATAACTACATAAGAAACGAGTTTAATTGTTTCAAAAACAAAAAAGGAGTTTAATGGTGGTGTGTATAAAGATACAAGTGAGATTATCTAAAGTTATTTTATTTTATAAATAAATACCTCAGCATCCTTATCTTTTTTGATCTACAAATGTTATTGCAGGAAAGTTGAATGGAGTTCTTGTCTCATCAGCAAACTACAAACAAAGAAATCATGTAACCAATCCAATTCTGGAACTTGATGTTCTTAAGCTAGAAATCTCATAG

Protein sequence

>MS.gene44270.t1

MGKINRQEMKMMNITMEVKVEWSSCLISKLQTNKENIRKLNGVLVSSANYKQRNHVTNPILELDVLKLEIS