Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45694.t1 | RHN61267.1 | 86.4 | 447 | 47 | 2 | 1 | 447 | 1 | 433 | 1.90E-156 | 562.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45694.t1 | O65009 | 39.1 | 248 | 139 | 4 | 209 | 445 | 34 | 280 | 9.9e-45 | 182.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45694.t1 | A0A396IEL3 | 86.4 | 447 | 47 | 2 | 1 | 447 | 1 | 433 | 1.4e-156 | 562.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049993 | MS.gene45694 | -0.831683 | 1.45E-55 | -1.69E-46 |
| MS.gene050426 | MS.gene45694 | 0.820895 | 5.38E-53 | -1.69E-46 |
| MS.gene050464 | MS.gene45694 | -0.81475 | 1.31E-51 | -1.69E-46 |
| MS.gene050529 | MS.gene45694 | -0.805146 | 1.54E-49 | -1.69E-46 |
| MS.gene051996 | MS.gene45694 | 0.820214 | 7.72E-53 | -1.69E-46 |
| MS.gene052011 | MS.gene45694 | 0.834823 | 2.40E-56 | -1.69E-46 |
| MS.gene052223 | MS.gene45694 | 0.870023 | 1.99E-66 | -1.69E-46 |
| MS.gene054183 | MS.gene45694 | -0.809567 | 1.78E-50 | -1.69E-46 |
| MS.gene054277 | MS.gene45694 | 0.81187 | 5.64E-51 | -1.69E-46 |
| MS.gene054742 | MS.gene45694 | 0.838464 | 2.83E-57 | -1.69E-46 |
| MS.gene055601 | MS.gene45694 | 0.825705 | 4.05E-54 | -1.69E-46 |
| MS.gene056330 | MS.gene45694 | 0.866056 | 3.77E-65 | -1.69E-46 |
| MS.gene056690 | MS.gene45694 | 0.843773 | 1.14E-58 | -1.69E-46 |
| MS.gene056691 | MS.gene45694 | 0.961871 | 3.30E-120 | -1.69E-46 |
| MS.gene056899 | MS.gene45694 | 0.839007 | 2.05E-57 | -1.69E-46 |
| MS.gene056920 | MS.gene45694 | 0.837921 | 3.91E-57 | -1.69E-46 |
| MS.gene056923 | MS.gene45694 | 0.834127 | 3.59E-56 | -1.69E-46 |
| MS.gene056924 | MS.gene45694 | 0.839934 | 1.18E-57 | -1.69E-46 |
| MS.gene058218 | MS.gene45694 | 0.814055 | 1.87E-51 | -1.69E-46 |
| MS.gene059043 | MS.gene45694 | 0.811711 | 6.11E-51 | -1.69E-46 |
| MS.gene060087 | MS.gene45694 | 0.830853 | 2.32E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45694.t1 | MTR_4g069570 | 90.801 | 337 | 25 | 2 | 111 | 447 | 6 | 336 | 0.0 | 628 |
| MS.gene45694.t1 | MTR_4g069550 | 62.370 | 481 | 129 | 10 | 1 | 447 | 1 | 463 | 0.0 | 576 |
| MS.gene45694.t1 | MTR_4g069520 | 61.957 | 460 | 113 | 6 | 41 | 447 | 273 | 723 | 0.0 | 563 |
| MS.gene45694.t1 | MTR_4g069520 | 42.671 | 307 | 57 | 8 | 1 | 197 | 1 | 298 | 1.58e-54 | 194 |
| MS.gene45694.t1 | MTR_4g069520 | 44.978 | 229 | 55 | 5 | 41 | 198 | 179 | 407 | 5.04e-44 | 164 |
| MS.gene45694.t1 | MTR_4g069520 | 61.957 | 460 | 113 | 6 | 41 | 447 | 259 | 709 | 0.0 | 563 |
| MS.gene45694.t1 | MTR_4g069520 | 47.535 | 284 | 62 | 6 | 1 | 197 | 1 | 284 | 9.20e-64 | 218 |
| MS.gene45694.t1 | MTR_4g069520 | 44.978 | 229 | 55 | 5 | 41 | 198 | 165 | 393 | 5.04e-44 | 164 |
| MS.gene45694.t1 | MTR_4g069040 | 57.567 | 337 | 120 | 5 | 118 | 446 | 188 | 509 | 3.11e-133 | 394 |
| MS.gene45694.t1 | MTR_3g116320 | 41.839 | 435 | 216 | 11 | 36 | 447 | 268 | 688 | 3.85e-101 | 317 |
| MS.gene45694.t1 | MTR_3g116270 | 38.431 | 510 | 247 | 19 | 1 | 447 | 1 | 506 | 1.94e-99 | 307 |
| MS.gene45694.t1 | MTR_6g086530 | 71.707 | 205 | 57 | 1 | 243 | 446 | 1 | 205 | 2.84e-98 | 293 |
| MS.gene45694.t1 | MTR_3g116410 | 47.032 | 219 | 111 | 4 | 231 | 446 | 59 | 275 | 1.25e-68 | 220 |
| MS.gene45694.t1 | MTR_3g107830 | 46.575 | 219 | 112 | 4 | 231 | 446 | 39 | 255 | 3.04e-68 | 218 |
| MS.gene45694.t1 | MTR_4g069680 | 45.662 | 219 | 114 | 4 | 231 | 446 | 70 | 286 | 4.39e-66 | 214 |
| MS.gene45694.t1 | MTR_3g116380 | 45.455 | 220 | 114 | 4 | 231 | 447 | 87 | 303 | 1.48e-65 | 213 |
| MS.gene45694.t1 | MTR_4g068420 | 62.590 | 139 | 33 | 1 | 309 | 447 | 2 | 121 | 5.15e-60 | 192 |
| MS.gene45694.t1 | MTR_4g069540 | 90.588 | 85 | 8 | 0 | 210 | 294 | 13 | 97 | 5.39e-47 | 157 |
| MS.gene45694.t1 | MTR_1g008500 | 38.356 | 219 | 125 | 6 | 231 | 445 | 171 | 383 | 3.30e-44 | 159 |
| MS.gene45694.t1 | MTR_1g008510 | 37.156 | 218 | 130 | 5 | 229 | 445 | 113 | 324 | 1.28e-41 | 150 |
| MS.gene45694.t1 | MTR_3g109490 | 40.000 | 220 | 123 | 7 | 231 | 446 | 107 | 321 | 2.21e-41 | 150 |
| MS.gene45694.t1 | MTR_0312s0030 | 37.615 | 218 | 126 | 7 | 231 | 445 | 113 | 323 | 2.48e-41 | 150 |
| MS.gene45694.t1 | MTR_1g007520 | 37.615 | 218 | 126 | 7 | 231 | 445 | 113 | 323 | 2.48e-41 | 150 |
| MS.gene45694.t1 | MTR_1g008590 | 37.615 | 218 | 126 | 7 | 231 | 445 | 113 | 323 | 9.02e-41 | 148 |
| MS.gene45694.t1 | MTR_1g008530 | 36.364 | 220 | 125 | 7 | 233 | 445 | 11 | 222 | 2.36e-40 | 144 |
| MS.gene45694.t1 | MTR_1g008470 | 35.185 | 216 | 131 | 5 | 231 | 444 | 89 | 297 | 4.02e-40 | 145 |
| MS.gene45694.t1 | MTR_1g008460 | 35.814 | 215 | 130 | 6 | 231 | 445 | 89 | 295 | 1.18e-39 | 144 |
| MS.gene45694.t1 | MTR_1g008560 | 36.036 | 222 | 131 | 6 | 229 | 445 | 113 | 328 | 2.78e-39 | 144 |
| MS.gene45694.t1 | MTR_1g008450 | 35.545 | 211 | 127 | 6 | 236 | 444 | 107 | 310 | 1.22e-34 | 131 |
| MS.gene45694.t1 | MTR_1g008580 | 35.795 | 176 | 106 | 5 | 271 | 445 | 1 | 170 | 5.09e-33 | 123 |
| MS.gene45694.t1 | MTR_3g078090 | 33.937 | 221 | 130 | 7 | 231 | 444 | 413 | 624 | 2.10e-30 | 124 |
| MS.gene45694.t1 | MTR_5g034320 | 30.769 | 221 | 137 | 6 | 231 | 444 | 415 | 626 | 3.50e-28 | 117 |
| MS.gene45694.t1 | MTR_8g064560 | 30.415 | 217 | 143 | 5 | 231 | 444 | 412 | 623 | 2.30e-26 | 112 |
| MS.gene45694.t1 | MTR_8g064500 | 30.126 | 239 | 151 | 7 | 209 | 444 | 145 | 370 | 1.63e-25 | 107 |
| MS.gene45694.t1 | MTR_8g064530 | 29.032 | 217 | 146 | 5 | 231 | 444 | 429 | 640 | 7.53e-24 | 105 |
| MS.gene45694.t1 | MTR_4g133840 | 32.941 | 170 | 108 | 5 | 277 | 444 | 21 | 186 | 1.02e-22 | 95.5 |
| MS.gene45694.t1 | MTR_5g033350 | 28.191 | 188 | 122 | 4 | 265 | 444 | 16 | 198 | 1.25e-19 | 87.0 |
| MS.gene45694.t1 | MTR_5g033340 | 27.111 | 225 | 146 | 6 | 228 | 444 | 163 | 377 | 5.70e-19 | 88.6 |
| MS.gene45694.t1 | MTR_5g033340 | 28.859 | 149 | 102 | 2 | 276 | 424 | 6 | 150 | 5.15e-16 | 79.7 |
| MS.gene45694.t1 | MTR_5g033330 | 27.317 | 205 | 132 | 5 | 228 | 424 | 194 | 389 | 3.19e-17 | 84.7 |
| MS.gene45694.t1 | MTR_5g033330 | 27.976 | 168 | 109 | 3 | 265 | 424 | 18 | 181 | 4.07e-16 | 81.3 |
| MS.gene45694.t1 | MTR_5g033330 | 26.222 | 225 | 148 | 6 | 228 | 444 | 402 | 616 | 4.74e-16 | 80.9 |
| MS.gene45694.t1 | MTR_2g081770 | 30.962 | 239 | 133 | 12 | 211 | 446 | 61 | 270 | 3.58e-17 | 82.0 |
| MS.gene45694.t1 | MTR_8g046000 | 36.364 | 154 | 84 | 6 | 295 | 447 | 83 | 223 | 4.05e-17 | 80.9 |
| MS.gene45694.t1 | MTR_8g445140 | 34.667 | 150 | 86 | 7 | 297 | 446 | 165 | 302 | 2.67e-16 | 79.7 |
| MS.gene45694.t1 | MTR_8g045890 | 34.667 | 150 | 86 | 7 | 297 | 446 | 294 | 431 | 5.27e-16 | 80.1 |
| MS.gene45694.t1 | MTR_8g045890 | 34.667 | 150 | 86 | 7 | 297 | 446 | 335 | 472 | 5.73e-16 | 80.5 |
| MS.gene45694.t1 | MTR_8g045890 | 34.667 | 150 | 86 | 7 | 297 | 446 | 372 | 509 | 5.89e-16 | 80.5 |
| MS.gene45694.t1 | MTR_8g445170 | 32.500 | 160 | 96 | 7 | 287 | 446 | 236 | 383 | 1.13e-15 | 79.0 |
| MS.gene45694.t1 | MTR_8g045880 | 34.667 | 150 | 86 | 6 | 297 | 446 | 177 | 314 | 1.90e-14 | 74.7 |
| MS.gene45694.t1 | MTR_8g045880 | 34.667 | 150 | 86 | 6 | 297 | 446 | 212 | 349 | 2.82e-14 | 74.3 |
| MS.gene45694.t1 | MTR_8g045880 | 34.667 | 150 | 86 | 6 | 297 | 446 | 214 | 351 | 2.85e-14 | 74.3 |
| MS.gene45694.t1 | MTR_2g081610 | 33.566 | 143 | 83 | 6 | 304 | 446 | 129 | 259 | 1.66e-13 | 70.9 |
| MS.gene45694.t1 | MTR_2g081590 | 27.386 | 241 | 140 | 12 | 208 | 446 | 52 | 259 | 1.34e-12 | 68.2 |
| MS.gene45694.t1 | MTR_8g075930 | 40.278 | 72 | 41 | 2 | 358 | 428 | 11 | 81 | 8.75e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45694.t1 | AT1G49320 | 37.387 | 222 | 131 | 3 | 231 | 445 | 58 | 278 | 1.02e-52 | 179 |
| MS.gene45694.t1 | AT5G25610 | 37.104 | 221 | 127 | 7 | 231 | 445 | 176 | 390 | 1.50e-42 | 155 |
| MS.gene45694.t1 | AT1G60390 | 27.027 | 407 | 246 | 18 | 62 | 444 | 241 | 620 | 6.07e-26 | 111 |
| MS.gene45694.t1 | AT1G70370 | 26.905 | 420 | 261 | 18 | 48 | 444 | 226 | 622 | 2.33e-24 | 106 |
| MS.gene45694.t1 | AT1G70370 | 26.905 | 420 | 261 | 18 | 48 | 444 | 226 | 622 | 2.33e-24 | 106 |
| MS.gene45694.t1 | AT1G23760 | 29.319 | 191 | 129 | 4 | 255 | 444 | 433 | 618 | 1.14e-22 | 101 |
Find 132 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAAGCTCCGTTGGATTTA+TGG | 0.143157 | 4.4:-38055812 | None:intergenic |
| TTTGATCTCCGTTGGATTTA+TGG | 0.163493 | 4.4:-38055545 | None:intergenic |
| GAATTTGTTGACACAATTAT+TGG | 0.204523 | 4.4:+38056248 | MS.gene45694:CDS |
| ATTCAGACAACTTGGGATTA+AGG | 0.231832 | 4.4:+38056553 | MS.gene45694:CDS |
| GTATGATCCAAGTTAGAAAT+TGG | 0.234762 | 4.4:-38055945 | None:intergenic |
| CTCCGTTGGATTTATGGTTA+TGG | 0.234942 | 4.4:-38055539 | None:intergenic |
| TTGTACCCAGTAATGTAATT+TGG | 0.253989 | 4.4:-38055867 | None:intergenic |
| CTATACCCGGTAATGTAATT+TGG | 0.262932 | 4.4:-38055513 | None:intergenic |
| TCCGTTGGATTTATGGTTAT+GGG | 0.267348 | 4.4:-38055538 | None:intergenic |
| TTCATTTGATTCTGGTTGTT+TGG | 0.269582 | 4.4:-38055616 | None:intergenic |
| AAACTTCTTGGACCGGAAAT+TGG | 0.272020 | 4.4:-38056031 | None:intergenic |
| TGTAATGACCCTCCAATTTC+CGG | 0.278512 | 4.4:+38056019 | MS.gene45694:CDS |
| TGATGAGAATGGAGATAAAA+TGG | 0.280906 | 4.4:+38056475 | MS.gene45694:CDS |
| CTCCGTTGGATTTATGGTTA+TGG | 0.282351 | 4.4:-38055806 | None:intergenic |
| ATGTAAGGTTCATTCGATTC+TGG | 0.299569 | 4.4:-38055459 | None:intergenic |
| TAGTAAATGGCATATGGATA+TGG | 0.303048 | 4.4:-38056401 | None:intergenic |
| TGTCTGAATATAATATGATT+AGG | 0.304357 | 4.4:-38056539 | None:intergenic |
| AGTTCTAGGTGAGGGGTTGC+TGG | 0.311022 | 4.4:-38056300 | None:intergenic |
| AAGTGCTCCTCTCATGGATT+TGG | 0.314509 | 4.4:-38056156 | None:intergenic |
| CAAAATCAAGTGGATTTAAA+TGG | 0.315181 | 4.4:+38055399 | MS.gene45694:CDS |
| TCCGTTGGATTTATGGTTAT+GGG | 0.315611 | 4.4:-38055805 | None:intergenic |
| GGTAATGTAATTTGATTGTT+TGG | 0.318305 | 4.4:-38055670 | None:intergenic |
| TGTAAGGACCATTGGATTCA+TGG | 0.323411 | 4.4:-38055710 | None:intergenic |
| GAACCTTACATGACTGGATA+TGG | 0.324109 | 4.4:+38055636 | MS.gene45694:CDS |
| GAACCTTACATAACTGGATA+TGG | 0.326403 | 4.4:+38055471 | MS.gene45694:CDS |
| CAATATCGTATAACTCAATA+TGG | 0.334238 | 4.4:+38055738 | MS.gene45694:CDS |
| TTCATTCGATTCTGGTTGTT+TGG | 0.335521 | 4.4:-38055451 | None:intergenic |
| CTTGAACACTTTAGTCTTTG+TGG | 0.337552 | 4.4:-38056438 | None:intergenic |
| GACCATTGGATTCATGGTTA+TGG | 0.338346 | 4.4:-38055704 | None:intergenic |
| TCCATTCAGATGTATCAAAA+TGG | 0.341451 | 4.4:-38056514 | None:intergenic |
| TGCGAAGGGGAAACCGTTAC+AGG | 0.345500 | 4.4:+38056185 | MS.gene45694:CDS |
| AGAGGTAAGGAGAAACTTCT+TGG | 0.347982 | 4.4:-38056043 | None:intergenic |
| ACCATTGGATTCATGGTTAT+GGG | 0.349773 | 4.4:-38055703 | None:intergenic |
| AAGCAACCAAATTACATTAC+TGG | 0.350332 | 4.4:+38055861 | MS.gene45694:CDS |
| GGTAATGTAATTTGGTTGTT+TGG | 0.352526 | 4.4:-38055505 | None:intergenic |
| TTGGCTTGAGGAGATCCTTC+AGG | 0.355790 | 4.4:-38056137 | None:intergenic |
| TCGAATGAACCTTACATAAC+TGG | 0.367241 | 4.4:+38055465 | MS.gene45694:CDS |
| ATGTAAGGTTCATTTGATTC+TGG | 0.372042 | 4.4:-38055624 | None:intergenic |
| TCTTCTACGGAGTTGGTAGA+TGG | 0.379268 | 4.4:-38055918 | None:intergenic |
| GTCTGAATATAATATGATTA+GGG | 0.381294 | 4.4:-38056538 | None:intergenic |
| AAACAATCAAATTACATTAC+CGG | 0.386224 | 4.4:+38055672 | MS.gene45694:CDS |
| AAGCAATCAAATTACATTAC+CGG | 0.386224 | 4.4:+38055774 | MS.gene45694:CDS |
| AATGTAATGGCAATAGTAAA+TGG | 0.389637 | 4.4:-38056414 | None:intergenic |
| AAACAACCAAATTACATTAC+CGG | 0.395982 | 4.4:+38055507 | MS.gene45694:CDS |
| CACAAAGACTAAAGTGTTCA+AGG | 0.405308 | 4.4:+38056439 | MS.gene45694:CDS |
| GAAAAGAGTTGAAGAATACT+TGG | 0.405738 | 4.4:-38056110 | None:intergenic |
| GGATGACAAGCTACCCATTT+GGG | 0.407784 | 4.4:-38056374 | None:intergenic |
| CATATTATATTCAGACAACT+TGG | 0.410545 | 4.4:+38056545 | MS.gene45694:CDS |
| AGATCTCCCAATTTCTAACT+TGG | 0.414347 | 4.4:+38055938 | MS.gene45694:CDS |
| GGTAATGTAATTTGATTGCT+TGG | 0.415162 | 4.4:-38055772 | None:intergenic |
| CAAGACAGGATATTTCAGTT+TGG | 0.426765 | 4.4:+38055977 | MS.gene45694:CDS |
| CTCTTCAAGTGCTCCTCTCA+TGG | 0.434563 | 4.4:-38056162 | None:intergenic |
| CAAATTACATTACCGGGTAT+AGG | 0.434802 | 4.4:+38055514 | MS.gene45694:CDS |
| CAAATTACATTACCGGGTAT+AGG | 0.434802 | 4.4:+38055781 | MS.gene45694:CDS |
| TTGAGTTATGTAAGGACCAT+TGG | 0.436047 | 4.4:-38055718 | None:intergenic |
| ATGATATTGATGTTCCCAAA+TGG | 0.438419 | 4.4:+38056360 | MS.gene45694:CDS |
| TTACCATATCCAGTTATGTA+AGG | 0.446290 | 4.4:-38055474 | None:intergenic |
| CCTCTCATGGATTTGGCTTG+AGG | 0.446591 | 4.4:-38056149 | None:intergenic |
| GGGATGACAAGCTACCCATT+TGG | 0.447559 | 4.4:-38056375 | None:intergenic |
| TCCCTGTGAACCATCTTATG+TGG | 0.449193 | 4.4:+38056606 | MS.gene45694:CDS |
| GAGCATGGACTCTAGAGAAT+TGG | 0.449401 | 4.4:-38056225 | None:intergenic |
| TAGTCTTTGTGGCAATGTAA+TGG | 0.454439 | 4.4:-38056427 | None:intergenic |
| TGGCAATAGTAAATGGCATA+TGG | 0.457847 | 4.4:-38056407 | None:intergenic |
| GGAGATAAAATGGAAGCTCT+TGG | 0.462321 | 4.4:+38056485 | MS.gene45694:CDS |
| AGACAACTTGGGATTAAGGC+TGG | 0.463334 | 4.4:+38056557 | MS.gene45694:CDS |
| ATACGATATTGAGTTATGTA+AGG | 0.463612 | 4.4:-38055726 | None:intergenic |
| TATGATCCAAGTTAGAAATT+GGG | 0.467513 | 4.4:-38055944 | None:intergenic |
| TGGCTTGAGGAGATCCTTCA+GGG | 0.473228 | 4.4:-38056136 | None:intergenic |
| TGAAGTTATGTAAGCTCCGT+TGG | 0.478150 | 4.4:-38055820 | None:intergenic |
| ATGATTATAAGCAGTTATGT+AGG | 0.479774 | 4.4:-38055424 | None:intergenic |
| ATGATTATAAGCAGTTATGT+AGG | 0.479774 | 4.4:-38055589 | None:intergenic |
| TTACCATATCCAGTCATGTA+AGG | 0.480524 | 4.4:-38055639 | None:intergenic |
| CAAAATCAAGTGGATTCAAA+TGG | 0.483359 | 4.4:+38055564 | MS.gene45694:CDS |
| TGATATTGATGTTCCCAAAT+GGG | 0.483777 | 4.4:+38056361 | MS.gene45694:CDS |
| TGGGAGATCTTCTACGGAGT+TGG | 0.486029 | 4.4:-38055925 | None:intergenic |
| TATGATGTCATTGATCCAAA+AGG | 0.494967 | 4.4:+38055891 | MS.gene45694:CDS |
| CTTCTACGGAGTTGGTAGAT+GGG | 0.498054 | 4.4:-38055917 | None:intergenic |
| AGTAAATGGCATATGGATAT+GGG | 0.502163 | 4.4:-38056400 | None:intergenic |
| TGGCTTTGGGATGGCTACAT+TGG | 0.503222 | 4.4:-38056632 | None:intergenic |
| GAGTTACCATAAAGAAGAAA+AGG | 0.507028 | 4.4:-38054646 | None:intergenic |
| ATCATGTGATACTTCTAAAA+CGG | 0.508731 | 4.4:-38056342 | None:intergenic |
| AGAGGGATAGTTCTAGGTGA+GGG | 0.508920 | 4.4:-38056308 | None:intergenic |
| GAGCACTTGAAGAGTGCGAA+GGG | 0.516914 | 4.4:+38056171 | MS.gene45694:CDS |
| CTTCTTGGACCGGAAATTGG+AGG | 0.517939 | 4.4:-38056028 | None:intergenic |
| TTCTACGGAGTTGGTAGATG+GGG | 0.526558 | 4.4:-38055916 | None:intergenic |
| AGAAATTGGGAGATCTTCTA+CGG | 0.530034 | 4.4:-38055931 | None:intergenic |
| GGTCTTTGTCTCCCCTGTAA+CGG | 0.530396 | 4.4:-38056198 | None:intergenic |
| GGGAGTTGTGACATCGAGAA+AGG | 0.530459 | 4.4:-38056089 | None:intergenic |
| TCAAATGAACCTTACATGAC+TGG | 0.531844 | 4.4:+38055630 | MS.gene45694:CDS |
| CATACAGAAGCTTTCAAGAC+AGG | 0.532423 | 4.4:+38055963 | MS.gene45694:CDS |
| AACAACCAAATTACATTACC+GGG | 0.532937 | 4.4:+38055508 | MS.gene45694:CDS |
| AGCAACCAAATTACATTACT+GGG | 0.535052 | 4.4:+38055862 | MS.gene45694:CDS |
| AAAAGAGTTGAAGAATACTT+GGG | 0.539336 | 4.4:-38056109 | None:intergenic |
| GACAACTTGGGATTAAGGCT+GGG | 0.540548 | 4.4:+38056558 | MS.gene45694:CDS |
| ACATTGGAATCCACATAAGA+TGG | 0.540746 | 4.4:-38056616 | None:intergenic |
| AACAATCAAATTACATTACC+GGG | 0.544310 | 4.4:+38055673 | MS.gene45694:CDS |
| ACATCATTGTAGATTGGCAG+AGG | 0.551845 | 4.4:+38055339 | MS.gene45694:intron |
| ATGGTTATGGGTCCTATACC+CGG | 0.552015 | 4.4:-38055526 | None:intergenic |
| ATGGTTATGGGTCCTATACC+CGG | 0.552015 | 4.4:-38055793 | None:intergenic |
| TCACTTGTTAGTGATGAGAA+TGG | 0.555520 | 4.4:+38056464 | MS.gene45694:CDS |
| TAAGGAGAAACTTCTTGGAC+CGG | 0.557579 | 4.4:-38056038 | None:intergenic |
| ATCCACATAAGATGGTTCAC+AGG | 0.559204 | 4.4:-38056608 | None:intergenic |
| ATATTATATTCAGACAACTT+GGG | 0.559590 | 4.4:+38056546 | MS.gene45694:CDS |
| TCTAGGTGAGGGGTTGCTGG+TGG | 0.565202 | 4.4:-38056297 | None:intergenic |
| ACTTCATATGATAAACATGA+AGG | 0.566668 | 4.4:+38055837 | MS.gene45694:CDS |
| TCTACGGAGTTGGTAGATGG+GGG | 0.569022 | 4.4:-38055915 | None:intergenic |
| TTCTTGGACCGGAAATTGGA+GGG | 0.569528 | 4.4:-38056027 | None:intergenic |
| AGTTTGGATGATCTTCACGT+TGG | 0.576107 | 4.4:+38055993 | MS.gene45694:CDS |
| TAGAGGGATAGTTCTAGGTG+AGG | 0.581869 | 4.4:-38056309 | None:intergenic |
| TTGTGACATCGAGAAAGGAA+TGG | 0.584970 | 4.4:-38056084 | None:intergenic |
| GCTGCGAGATCAAAATCAAG+TGG | 0.587722 | 4.4:+38055389 | MS.gene45694:CDS |
| GCGAAGGGGAAACCGTTACA+GGG | 0.589433 | 4.4:+38056186 | MS.gene45694:CDS |
| GGAGCACTTGAAGAGTGCGA+AGG | 0.589477 | 4.4:+38056170 | MS.gene45694:CDS |
| CAACGGAGATCAAAATCAAG+TGG | 0.591165 | 4.4:+38055554 | MS.gene45694:CDS |
| AGCAATCAAATTACATTACC+GGG | 0.594581 | 4.4:+38055775 | MS.gene45694:CDS |
| AAATGGCATATGGATATGGG+AGG | 0.595703 | 4.4:-38056397 | None:intergenic |
| ATGGTTATGGGTCTTATACC+CGG | 0.605292 | 4.4:-38055691 | None:intergenic |
| ATGGCATATGGATATGGGAG+GGG | 0.608580 | 4.4:-38056395 | None:intergenic |
| TGTGTCAACAAATTCGAGCA+TGG | 0.613242 | 4.4:-38056240 | None:intergenic |
| GAGGGATAGTTCTAGGTGAG+GGG | 0.618840 | 4.4:-38056307 | None:intergenic |
| ACCCATAACCATGAATCCAA+TGG | 0.622347 | 4.4:+38055702 | MS.gene45694:CDS |
| ACCCATAACCATAAATCCAA+CGG | 0.633019 | 4.4:+38055537 | MS.gene45694:CDS |
| ACCCATAACCATAAATCCAA+CGG | 0.633019 | 4.4:+38055804 | MS.gene45694:CDS |
| GGACTCTAGAGAATTGGCAC+AGG | 0.635769 | 4.4:-38056219 | None:intergenic |
| CATCGAGAAAGGAATGGAGT+CGG | 0.647174 | 4.4:-38056078 | None:intergenic |
| CCTCAAGCCAAATCCATGAG+AGG | 0.648458 | 4.4:+38056149 | MS.gene45694:CDS |
| TCCACATAAGATGGTTCACA+GGG | 0.658935 | 4.4:-38056607 | None:intergenic |
| CGAAGGGGAAACCGTTACAG+GGG | 0.669441 | 4.4:+38056187 | MS.gene45694:CDS |
| CTACGGAGTTGGTAGATGGG+GGG | 0.677778 | 4.4:-38055914 | None:intergenic |
| AGCACTTGAAGAGTGCGAAG+GGG | 0.678572 | 4.4:+38056172 | MS.gene45694:CDS |
| ACAGGGAAGAAATGACACAC+TGG | 0.683295 | 4.4:-38056590 | None:intergenic |
| AATGGCATATGGATATGGGA+GGG | 0.696886 | 4.4:-38056396 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATATATATATATATA+GGG | - | chr4.4:38055021-38055040 | None:intergenic | 0.0% |
| !! | TAATATATATATATATATAT+AGG | - | chr4.4:38055022-38055041 | None:intergenic | 0.0% |
| !! | ACCTTAAAAAAAATTAAAAG+TGG | - | chr4.4:38054965-38054984 | None:intergenic | 15.0% |
| !!! | TCCACTTTTAATTTTTTTTA+AGG | + | chr4.4:38054961-38054980 | MS.gene45694:intron | 15.0% |
| !!! | TTTCAATTAATTTTTCTTTG+AGG | + | chr4.4:38055117-38055136 | MS.gene45694:intron | 15.0% |
| !! | AAACAATCAAATTACATTAC+CGG | + | chr4.4:38055672-38055691 | MS.gene45694:CDS | 20.0% |
| !! | ATATTATATTCAGACAACTT+GGG | + | chr4.4:38056546-38056565 | MS.gene45694:CDS | 20.0% |
| !! | GTCTGAATATAATATGATTA+GGG | - | chr4.4:38056541-38056560 | None:intergenic | 20.0% |
| !! | TAGTAATAGTGATATCAATT+TGG | + | chr4.4:38055217-38055236 | MS.gene45694:intron | 20.0% |
| !! | TGTCTGAATATAATATGATT+AGG | - | chr4.4:38056542-38056561 | None:intergenic | 20.0% |
| !!! | AGGACATGATATTTTTTTTT+TGG | + | chr4.4:38054915-38054934 | MS.gene45694:intron | 20.0% |
| !!! | TTTTTTAAGGTGAATAAGTA+GGG | + | chr4.4:38054974-38054993 | MS.gene45694:intron | 20.0% |
| !!! | TTTTTTTAAGGTGAATAAGT+AGG | + | chr4.4:38054973-38054992 | MS.gene45694:intron | 20.0% |
| ! | AAAAGAGTTGAAGAATACTT+GGG | - | chr4.4:38056112-38056131 | None:intergenic | 25.0% |
| ! | AAACAACCAAATTACATTAC+CGG | + | chr4.4:38055507-38055526 | MS.gene45694:CDS | 25.0% |
| ! | AACAATCAAATTACATTACC+GGG | + | chr4.4:38055673-38055692 | MS.gene45694:CDS | 25.0% |
| ! | AAGCAATCAAATTACATTAC+CGG | + | chr4.4:38055774-38055793 | MS.gene45694:CDS | 25.0% |
| ! | AATGTAATGGCAATAGTAAA+TGG | - | chr4.4:38056417-38056436 | None:intergenic | 25.0% |
| ! | ACTTCATATGATAAACATGA+AGG | + | chr4.4:38055837-38055856 | MS.gene45694:CDS | 25.0% |
| ! | ATACGATATTGAGTTATGTA+AGG | - | chr4.4:38055729-38055748 | None:intergenic | 25.0% |
| ! | ATCAATTTGGCTAATCAATT+GGG | + | chr4.4:38055230-38055249 | MS.gene45694:intron | 25.0% |
| ! | ATGATTATAAGCAGTTATGT+AGG | - | chr4.4:38055427-38055446 | None:intergenic | 25.0% |
| ! | CAATATCGTATAACTCAATA+TGG | + | chr4.4:38055738-38055757 | MS.gene45694:CDS | 25.0% |
| ! | CATATTATATTCAGACAACT+TGG | + | chr4.4:38056545-38056564 | MS.gene45694:CDS | 25.0% |
| ! | GGTAATGTAATTTGATTGTT+TGG | - | chr4.4:38055673-38055692 | None:intergenic | 25.0% |
| ! | TATCAATTTGGCTAATCAAT+TGG | + | chr4.4:38055229-38055248 | MS.gene45694:intron | 25.0% |
| ! | TATGATCCAAGTTAGAAATT+GGG | - | chr4.4:38055947-38055966 | None:intergenic | 25.0% |
| ! | TTTATGGTAACTCAGTTATA+GGG | + | chr4.4:38054656-38054675 | MS.gene45694:intron | 25.0% |
| !! | ATCATGTGATACTTCTAAAA+CGG | - | chr4.4:38056345-38056364 | None:intergenic | 25.0% |
| !! | ATTTGGTTCAAATATCACAA+AGG | + | chr4.4:38054704-38054723 | MS.gene45694:intron | 25.0% |
| !! | CAAAATCAAGTGGATTTAAA+TGG | + | chr4.4:38055399-38055418 | MS.gene45694:CDS | 25.0% |
| !! | TTTAGTCCTTTTCTTCTTTA+TGG | + | chr4.4:38054640-38054659 | MS.gene45694:CDS | 25.0% |
| !! | TTTGGTTCAAATATCACAAA+GGG | + | chr4.4:38054705-38054724 | MS.gene45694:intron | 25.0% |
| !!! | ACTATTGTTTTATCAACACT+TGG | + | chr4.4:38054876-38054895 | MS.gene45694:intron | 25.0% |
| !!! | GAATTTGTTGACACAATTAT+TGG | + | chr4.4:38056248-38056267 | MS.gene45694:CDS | 25.0% |
| AACAACCAAATTACATTACC+GGG | + | chr4.4:38055508-38055527 | MS.gene45694:CDS | 30.0% | |
| AAGCAACCAAATTACATTAC+TGG | + | chr4.4:38055861-38055880 | MS.gene45694:CDS | 30.0% | |
| AGCAACCAAATTACATTACT+GGG | + | chr4.4:38055862-38055881 | MS.gene45694:CDS | 30.0% | |
| AGCAATCAAATTACATTACC+GGG | + | chr4.4:38055775-38055794 | MS.gene45694:CDS | 30.0% | |
| AGTAAATGGCATATGGATAT+GGG | - | chr4.4:38056403-38056422 | None:intergenic | 30.0% | |
| ATGATATTGATGTTCCCAAA+TGG | + | chr4.4:38056360-38056379 | MS.gene45694:CDS | 30.0% | |
| ATGTAAGGTTCATTTGATTC+TGG | - | chr4.4:38055627-38055646 | None:intergenic | 30.0% | |
| CTTTATGGTAACTCAGTTAT+AGG | + | chr4.4:38054655-38054674 | MS.gene45694:intron | 30.0% | |
| GAAAAGAGTTGAAGAATACT+TGG | - | chr4.4:38056113-38056132 | None:intergenic | 30.0% | |
| GAGTTACCATAAAGAAGAAA+AGG | - | chr4.4:38054649-38054668 | None:intergenic | 30.0% | |
| GGTAATGTAATTTGATTGCT+TGG | - | chr4.4:38055775-38055794 | None:intergenic | 30.0% | |
| GGTAATGTAATTTGGTTGTT+TGG | - | chr4.4:38055508-38055527 | None:intergenic | 30.0% | |
| GTATGATCCAAGTTAGAAAT+TGG | - | chr4.4:38055948-38055967 | None:intergenic | 30.0% | |
| TAGTAAATGGCATATGGATA+TGG | - | chr4.4:38056404-38056423 | None:intergenic | 30.0% | |
| TATGAAATATTCATACCGAC+AGG | + | chr4.4:38055040-38055059 | MS.gene45694:intron | 30.0% | |
| TATGATGTCATTGATCCAAA+AGG | + | chr4.4:38055891-38055910 | MS.gene45694:CDS | 30.0% | |
| TCATTGACATCATTGTAGAT+TGG | + | chr4.4:38055333-38055352 | MS.gene45694:intron | 30.0% | |
| TCCATTCAGATGTATCAAAA+TGG | - | chr4.4:38056517-38056536 | None:intergenic | 30.0% | |
| TCTAAATTCACAAGGACATA+CGG | + | chr4.4:38055063-38055082 | MS.gene45694:intron | 30.0% | |
| TGATATTGATGTTCCCAAAT+GGG | + | chr4.4:38056361-38056380 | MS.gene45694:CDS | 30.0% | |
| TGATGAGAATGGAGATAAAA+TGG | + | chr4.4:38056475-38056494 | MS.gene45694:CDS | 30.0% | |
| TTAATTGCAAGGACTTTCAA+GGG | - | chr4.4:38055184-38055203 | None:intergenic | 30.0% | |
| TTACCATATCCAGTTATGTA+AGG | - | chr4.4:38055477-38055496 | None:intergenic | 30.0% | |
| TTGTACCCAGTAATGTAATT+TGG | - | chr4.4:38055870-38055889 | None:intergenic | 30.0% | |
| TTTAATTGCAAGGACTTTCA+AGG | - | chr4.4:38055185-38055204 | None:intergenic | 30.0% | |
| ! | CAAAATCAAGTGGATTCAAA+TGG | + | chr4.4:38055564-38055583 | MS.gene45694:CDS | 30.0% |
| ! | TTCATTTGATTCTGGTTGTT+TGG | - | chr4.4:38055619-38055638 | None:intergenic | 30.0% |
| ! | TTTAGAACCTAGAGCTTTAT+GGG | - | chr4.4:38055152-38055171 | None:intergenic | 30.0% |
| !!! | TACATCACGTTTTAATTGCA+AGG | - | chr4.4:38055195-38055214 | None:intergenic | 30.0% |
| ACATTGGAATCCACATAAGA+TGG | - | chr4.4:38056619-38056638 | None:intergenic | 35.0% | |
| ACCATTGGATTCATGGTTAT+GGG | - | chr4.4:38055706-38055725 | None:intergenic | 35.0% | |
| ACCCATAACCATAAATCCAA+CGG | + | chr4.4:38055537-38055556 | MS.gene45694:CDS | 35.0% | |
| AGAAATTGGGAGATCTTCTA+CGG | - | chr4.4:38055934-38055953 | None:intergenic | 35.0% | |
| AGATCTCCCAATTTCTAACT+TGG | + | chr4.4:38055938-38055957 | MS.gene45694:CDS | 35.0% | |
| ATGTAAGGTTCATTCGATTC+TGG | - | chr4.4:38055462-38055481 | None:intergenic | 35.0% | |
| ATTCAGACAACTTGGGATTA+AGG | + | chr4.4:38056553-38056572 | MS.gene45694:CDS | 35.0% | |
| CAAATTACATTACCGGGTAT+AGG | + | chr4.4:38055514-38055533 | MS.gene45694:CDS | 35.0% | |
| CAAGACAGGATATTTCAGTT+TGG | + | chr4.4:38055977-38055996 | MS.gene45694:CDS | 35.0% | |
| CTATACCCGGTAATGTAATT+TGG | - | chr4.4:38055516-38055535 | None:intergenic | 35.0% | |
| GAACCTTACATAACTGGATA+TGG | + | chr4.4:38055471-38055490 | MS.gene45694:CDS | 35.0% | |
| GTTCAAATATCACAAAGGGA+GGG | + | chr4.4:38054709-38054728 | MS.gene45694:intron | 35.0% | |
| TAATTGCAAGGACTTTCAAG+GGG | - | chr4.4:38055183-38055202 | None:intergenic | 35.0% | |
| TAGTCTTTGTGGCAATGTAA+TGG | - | chr4.4:38056430-38056449 | None:intergenic | 35.0% | |
| TCAAATGAACCTTACATGAC+TGG | + | chr4.4:38055630-38055649 | MS.gene45694:CDS | 35.0% | |
| TCATGTCCTACAAAACTCTA+CGG | - | chr4.4:38054904-38054923 | None:intergenic | 35.0% | |
| TCCGTTGGATTTATGGTTAT+GGG | - | chr4.4:38055541-38055560 | None:intergenic | 35.0% | |
| TCCTTACCTCTCAAAAAAAG+AGG | + | chr4.4:38056055-38056074 | MS.gene45694:CDS | 35.0% | |
| TCGAATGAACCTTACATAAC+TGG | + | chr4.4:38055465-38055484 | MS.gene45694:CDS | 35.0% | |
| TGGCAATAGTAAATGGCATA+TGG | - | chr4.4:38056410-38056429 | None:intergenic | 35.0% | |
| TTACCATATCCAGTCATGTA+AGG | - | chr4.4:38055642-38055661 | None:intergenic | 35.0% | |
| TTGAGTTATGTAAGGACCAT+TGG | - | chr4.4:38055721-38055740 | None:intergenic | 35.0% | |
| TTTGATCTCCGTTGGATTTA+TGG | - | chr4.4:38055548-38055567 | None:intergenic | 35.0% | |
| ! | CACAAAGACTAAAGTGTTCA+AGG | + | chr4.4:38056439-38056458 | MS.gene45694:CDS | 35.0% |
| ! | CTTGAACACTTTAGTCTTTG+TGG | - | chr4.4:38056441-38056460 | None:intergenic | 35.0% |
| ! | TCACTTGTTAGTGATGAGAA+TGG | + | chr4.4:38056464-38056483 | MS.gene45694:CDS | 35.0% |
| ! | TTCATTCGATTCTGGTTGTT+TGG | - | chr4.4:38055454-38055473 | None:intergenic | 35.0% |
| ! | TTTTGTAGAGGGATAGTTCT+AGG | - | chr4.4:38056317-38056336 | None:intergenic | 35.0% |
| !! | CTTTAGAACCTAGAGCTTTA+TGG | - | chr4.4:38055153-38055172 | None:intergenic | 35.0% |
| !! | GCCATTTTGATACATCTGAA+TGG | + | chr4.4:38056513-38056532 | MS.gene45694:CDS | 35.0% |
| !!! | AAAACGGTGTAGTTTTGTAG+AGG | - | chr4.4:38056329-38056348 | None:intergenic | 35.0% |
| !!! | AAACGGTGTAGTTTTGTAGA+GGG | - | chr4.4:38056328-38056347 | None:intergenic | 35.0% |
| AAACTTCTTGGACCGGAAAT+TGG | - | chr4.4:38056034-38056053 | None:intergenic | 40.0% | |
| AAATGGCATATGGATATGGG+AGG | - | chr4.4:38056400-38056419 | None:intergenic | 40.0% | |
| AATGGCATATGGATATGGGA+GGG | - | chr4.4:38056399-38056418 | None:intergenic | 40.0% | |
| ACATCATTGTAGATTGGCAG+AGG | + | chr4.4:38055339-38055358 | MS.gene45694:intron | 40.0% | |
| ACCCATAACCATGAATCCAA+TGG | + | chr4.4:38055702-38055721 | MS.gene45694:CDS | 40.0% | |
| AGAGGTAAGGAGAAACTTCT+TGG | - | chr4.4:38056046-38056065 | None:intergenic | 40.0% | |
| AGTTTGGATGATCTTCACGT+TGG | + | chr4.4:38055993-38056012 | MS.gene45694:CDS | 40.0% | |
| ATCCACATAAGATGGTTCAC+AGG | - | chr4.4:38056611-38056630 | None:intergenic | 40.0% | |
| CAACGGAGATCAAAATCAAG+TGG | + | chr4.4:38055554-38055573 | MS.gene45694:CDS | 40.0% | |
| CATACAGAAGCTTTCAAGAC+AGG | + | chr4.4:38055963-38055982 | MS.gene45694:CDS | 40.0% | |
| CCAATATCCCATAAAGCTCT+AGG | + | chr4.4:38055142-38055161 | MS.gene45694:intron | 40.0% | |
| CCTTGTGAATTTAGACCTGT+CGG | - | chr4.4:38055058-38055077 | None:intergenic | 40.0% | |
| CTCCGTTGGATTTATGGTTA+TGG | - | chr4.4:38055542-38055561 | None:intergenic | 40.0% | |
| GAACCTTACATGACTGGATA+TGG | + | chr4.4:38055636-38055655 | MS.gene45694:CDS | 40.0% | |
| GACCATTGGATTCATGGTTA+TGG | - | chr4.4:38055707-38055726 | None:intergenic | 40.0% | |
| GGAGATAAAATGGAAGCTCT+TGG | + | chr4.4:38056485-38056504 | MS.gene45694:CDS | 40.0% | |
| GGTTCAAATATCACAAAGGG+AGG | + | chr4.4:38054708-38054727 | MS.gene45694:intron | 40.0% | |
| TAAGGAGAAACTTCTTGGAC+CGG | - | chr4.4:38056041-38056060 | None:intergenic | 40.0% | |
| TCCAAATATCCATCAACTGG+AGG | - | chr4.4:38054768-38054787 | None:intergenic | 40.0% | |
| TCCACATAAGATGGTTCACA+GGG | - | chr4.4:38056610-38056629 | None:intergenic | 40.0% | |
| TGAAGTTATGTAAGCTCCGT+TGG | - | chr4.4:38055823-38055842 | None:intergenic | 40.0% | |
| TGTAAGCTCCGTTGGATTTA+TGG | - | chr4.4:38055815-38055834 | None:intergenic | 40.0% | |
| TGTAAGGACCATTGGATTCA+TGG | - | chr4.4:38055713-38055732 | None:intergenic | 40.0% | |
| TGTAATGACCCTCCAATTTC+CGG | + | chr4.4:38056019-38056038 | MS.gene45694:CDS | 40.0% | |
| TGTGTCAACAAATTCGAGCA+TGG | - | chr4.4:38056243-38056262 | None:intergenic | 40.0% | |
| TTGTGACATCGAGAAAGGAA+TGG | - | chr4.4:38056087-38056106 | None:intergenic | 40.0% | |
| ! | ATGGTTATGGGTCTTATACC+CGG | - | chr4.4:38055694-38055713 | None:intergenic | 40.0% |
| ! | CAACTCTTTTCAATCCCTGA+AGG | + | chr4.4:38056122-38056141 | MS.gene45694:CDS | 40.0% |
| ! | CCTAGAGCTTTATGGGATAT+TGG | - | chr4.4:38055145-38055164 | None:intergenic | 40.0% |
| !! | AGTTGATGGATATTTGGAGG+GGG | + | chr4.4:38054770-38054789 | MS.gene45694:intron | 40.0% |
| !! | CACTTGATTTTGATCTCCGT+TGG | - | chr4.4:38055556-38055575 | None:intergenic | 40.0% |
| !! | CAGTTGATGGATATTTGGAG+GGG | + | chr4.4:38054769-38054788 | MS.gene45694:intron | 40.0% |
| !! | CCAGTTGATGGATATTTGGA+GGG | + | chr4.4:38054768-38054787 | MS.gene45694:intron | 40.0% |
| !! | TCCAGTTGATGGATATTTGG+AGG | + | chr4.4:38054767-38054786 | MS.gene45694:intron | 40.0% |
| !! | TCCTCCAGTTGATGGATATT+TGG | + | chr4.4:38054764-38054783 | MS.gene45694:intron | 40.0% |
| !!! | GCCTCTTTTTTTGAGAGGTA+AGG | - | chr4.4:38056059-38056078 | None:intergenic | 40.0% |
| AAGTGCTCCTCTCATGGATT+TGG | - | chr4.4:38056159-38056178 | None:intergenic | 45.0% | |
| ACAGGGAAGAAATGACACAC+TGG | - | chr4.4:38056593-38056612 | None:intergenic | 45.0% | |
| AGACAACTTGGGATTAAGGC+TGG | + | chr4.4:38056557-38056576 | MS.gene45694:CDS | 45.0% | |
| ATGGCATATGGATATGGGAG+GGG | - | chr4.4:38056398-38056417 | None:intergenic | 45.0% | |
| ATGGTTATGGGTCCTATACC+CGG | - | chr4.4:38055529-38055548 | None:intergenic | 45.0% | |
| CATCGAGAAAGGAATGGAGT+CGG | - | chr4.4:38056081-38056100 | None:intergenic | 45.0% | |
| CCCTCCAAATATCCATCAAC+TGG | - | chr4.4:38054771-38054790 | None:intergenic | 45.0% | |
| CCGACAGGTCTAAATTCACA+AGG | + | chr4.4:38055055-38055074 | MS.gene45694:intron | 45.0% | |
| GACAACTTGGGATTAAGGCT+GGG | + | chr4.4:38056558-38056577 | MS.gene45694:CDS | 45.0% | |
| GCTGCGAGATCAAAATCAAG+TGG | + | chr4.4:38055389-38055408 | MS.gene45694:CDS | 45.0% | |
| GGATGACAAGCTACCCATTT+GGG | - | chr4.4:38056377-38056396 | None:intergenic | 45.0% | |
| TCCCTGTGAACCATCTTATG+TGG | + | chr4.4:38056606-38056625 | MS.gene45694:CDS | 45.0% | |
| TCTAACTCTCCTCCAGTTGA+TGG | + | chr4.4:38054756-38054775 | MS.gene45694:intron | 45.0% | |
| TTCTTGGACCGGAAATTGGA+GGG | - | chr4.4:38056030-38056049 | None:intergenic | 45.0% | |
| ! | GAGCATGGACTCTAGAGAAT+TGG | - | chr4.4:38056228-38056247 | None:intergenic | 45.0% |
| !! | AGAGGGATAGTTCTAGGTGA+GGG | - | chr4.4:38056311-38056330 | None:intergenic | 45.0% |
| !! | CTTCTACGGAGTTGGTAGAT+GGG | - | chr4.4:38055920-38055939 | None:intergenic | 45.0% |
| !! | TAGAGGGATAGTTCTAGGTG+AGG | - | chr4.4:38056312-38056331 | None:intergenic | 45.0% |
| !! | TCTTCTACGGAGTTGGTAGA+TGG | - | chr4.4:38055921-38055940 | None:intergenic | 45.0% |
| !! | TTCTACGGAGTTGGTAGATG+GGG | - | chr4.4:38055919-38055938 | None:intergenic | 45.0% |
| !! | TTGGCACCGTAGAGTTTTGT+AGG | + | chr4.4:38054895-38054914 | MS.gene45694:intron | 45.0% |
| !!! | AGTCGGCCTCTTTTTTTGAG+AGG | - | chr4.4:38056064-38056083 | None:intergenic | 45.0% |
| !! | ATATATATATATATATATAG+GGG | - | chr4.4:38055020-38055039 | None:intergenic | 5.0% |
| !!! | TATTTTAAATTTTAGTTATT+TGG | + | chr4.4:38054687-38054706 | MS.gene45694:intron | 5.0% |
| AGGGGTTGAAGTTTGACCTC+AGG | - | chr4.4:38055002-38055021 | None:intergenic | 50.0% | |
| CCTCAAGCCAAATCCATGAG+AGG | + | chr4.4:38056149-38056168 | MS.gene45694:CDS | 50.0% | |
| CTCTTCAAGTGCTCCTCTCA+TGG | - | chr4.4:38056165-38056184 | None:intergenic | 50.0% | |
| CTTCTTGGACCGGAAATTGG+AGG | - | chr4.4:38056031-38056050 | None:intergenic | 50.0% | |
| GGGAGTTGTGACATCGAGAA+AGG | - | chr4.4:38056092-38056111 | None:intergenic | 50.0% | |
| GGGATGACAAGCTACCCATT+TGG | - | chr4.4:38056378-38056397 | None:intergenic | 50.0% | |
| GGTCTTTGTCTCCCCTGTAA+CGG | - | chr4.4:38056201-38056220 | None:intergenic | 50.0% | |
| TGGCTTGAGGAGATCCTTCA+GGG | - | chr4.4:38056139-38056158 | None:intergenic | 50.0% | |
| TGGGAGATCTTCTACGGAGT+TGG | - | chr4.4:38055928-38055947 | None:intergenic | 50.0% | |
| ! | AGCACTTGAAGAGTGCGAAG+GGG | + | chr4.4:38056172-38056191 | MS.gene45694:CDS | 50.0% |
| ! | GAGCACTTGAAGAGTGCGAA+GGG | + | chr4.4:38056171-38056190 | MS.gene45694:CDS | 50.0% |
| ! | GGACTCTAGAGAATTGGCAC+AGG | - | chr4.4:38056222-38056241 | None:intergenic | 50.0% |
| ! | GTGAATAAGTAGGGTGCCTG+AGG | + | chr4.4:38054983-38055002 | MS.gene45694:intron | 50.0% |
| ! | TTGGCTTGAGGAGATCCTTC+AGG | - | chr4.4:38056140-38056159 | None:intergenic | 50.0% |
| !! | CCTCTCATGGATTTGGCTTG+AGG | - | chr4.4:38056152-38056171 | None:intergenic | 50.0% |
| !! | GAGGGATAGTTCTAGGTGAG+GGG | - | chr4.4:38056310-38056329 | None:intergenic | 50.0% |
| !! | TCTACGGAGTTGGTAGATGG+GGG | - | chr4.4:38055918-38055937 | None:intergenic | 50.0% |
| CGAAGGGGAAACCGTTACAG+GGG | + | chr4.4:38056187-38056206 | MS.gene45694:CDS | 55.0% | |
| GCGAAGGGGAAACCGTTACA+GGG | + | chr4.4:38056186-38056205 | MS.gene45694:CDS | 55.0% | |
| TGCGAAGGGGAAACCGTTAC+AGG | + | chr4.4:38056185-38056204 | MS.gene45694:CDS | 55.0% | |
| ! | GGAGCACTTGAAGAGTGCGA+AGG | + | chr4.4:38056170-38056189 | MS.gene45694:CDS | 55.0% |
| ! | TTGGTAGATGGGGGGCCTTT+TGG | - | chr4.4:38055909-38055928 | None:intergenic | 55.0% |
| !! | AGTTCTAGGTGAGGGGTTGC+TGG | - | chr4.4:38056303-38056322 | None:intergenic | 55.0% |
| !! | CTACGGAGTTGGTAGATGGG+GGG | - | chr4.4:38055917-38055936 | None:intergenic | 55.0% |
| TCTAGGTGAGGGGTTGCTGG+TGG | - | chr4.4:38056300-38056319 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 38054608 | 38056640 | 38054608 | ID=MS.gene45694 |
| chr4.4 | mRNA | 38054608 | 38056640 | 38054608 | ID=MS.gene45694.t1;Parent=MS.gene45694 |
| chr4.4 | exon | 38054608 | 38054661 | 38054608 | ID=MS.gene45694.t1.exon1;Parent=MS.gene45694.t1 |
| chr4.4 | CDS | 38054608 | 38054661 | 38054608 | ID=cds.MS.gene45694.t1;Parent=MS.gene45694.t1 |
| chr4.4 | exon | 38055351 | 38056640 | 38055351 | ID=MS.gene45694.t1.exon2;Parent=MS.gene45694.t1 |
| chr4.4 | CDS | 38055351 | 38056640 | 38055351 | ID=cds.MS.gene45694.t1;Parent=MS.gene45694.t1 |
| Gene Sequence |
| Protein sequence |
