AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46373

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46373.t1 MTR_4g098950 100.000 167 0 0 1 167 40 206 1.40e-122 343
MS.gene46373.t1 MTR_5g013900 89.286 168 17 1 1 167 40 207 3.80e-109 310
MS.gene46373.t1 MTR_8g090215 82.738 168 28 1 1 167 40 207 2.19e-102 293
MS.gene46373.t1 MTR_3g087160 83.929 168 25 2 1 167 40 206 4.30e-101 289
MS.gene46373.t1 MTR_8g031680 47.328 131 69 0 1 131 37 167 3.14e-39 132
MS.gene46373.t1 MTR_8g031870 48.819 127 65 0 2 128 38 164 1.56e-38 130
MS.gene46373.t1 MTR_5g076590 41.667 132 77 0 1 132 41 172 2.18e-37 127
MS.gene46373.t1 MTR_3g064390 41.667 132 77 0 1 132 41 172 3.22e-37 127
MS.gene46373.t1 MTR_1g094220 45.455 132 71 1 2 132 63 194 4.34e-37 127
MS.gene46373.t1 MTR_8g031660 46.154 130 70 0 2 131 38 167 5.72e-37 126
MS.gene46373.t1 MTR_2g027660 35.754 179 96 2 2 167 38 210 6.13e-37 127
MS.gene46373.t1 MTR_6g021790 42.308 130 75 0 2 131 38 167 4.06e-36 124
MS.gene46373.t1 MTR_8g103550 42.748 131 75 0 1 131 40 170 1.33e-35 123
MS.gene46373.t1 MTR_8g031830 47.500 120 63 0 2 121 38 157 2.31e-35 122
MS.gene46373.t1 MTR_1g094220 44.882 127 69 1 2 127 63 189 8.00e-35 121
MS.gene46373.t1 MTR_2g102060 39.726 146 84 1 2 143 42 187 1.23e-34 120
MS.gene46373.t1 MTR_4g064897 34.286 175 103 2 1 166 43 214 3.73e-34 119
MS.gene46373.t1 MTR_1g094220 45.161 124 67 1 2 124 63 186 4.74e-34 119
MS.gene46373.t1 MTR_1g094220 45.161 124 67 1 2 124 63 186 1.05e-33 119
MS.gene46373.t1 MTR_3g069510 35.220 159 94 1 1 150 43 201 2.87e-33 117
MS.gene46373.t1 MTR_4g088090 34.356 163 89 1 1 145 44 206 3.07e-33 117
MS.gene46373.t1 MTR_0262s0050 40.157 127 76 0 1 127 46 172 3.30e-33 117
MS.gene46373.t1 MTR_8g089985 38.583 127 78 0 1 127 48 174 4.23e-33 117
MS.gene46373.t1 MTR_4g099470 40.458 131 78 0 1 131 15 145 6.14e-33 115
MS.gene46373.t1 MTR_2g005510 40.000 125 75 0 1 125 46 170 8.28e-33 116
MS.gene46373.t1 MTR_2g005500 41.985 131 76 0 1 131 40 170 1.53e-32 115
MS.gene46373.t1 MTR_1g052475 38.583 127 78 0 1 127 46 172 1.89e-32 115
MS.gene46373.t1 MTR_3g086980 37.903 124 77 0 1 124 47 170 3.10e-32 115
MS.gene46373.t1 MTR_8g027220 38.583 127 78 0 1 127 57 183 3.47e-32 115
MS.gene46373.t1 MTR_4g079350 33.129 163 91 1 1 145 44 206 3.54e-32 114
MS.gene46373.t1 MTR_8g036220 39.516 124 75 0 1 124 47 170 6.02e-32 114
MS.gene46373.t1 MTR_2g014990 39.370 127 77 0 1 127 44 170 1.72e-31 113
MS.gene46373.t1 MTR_7g081700 36.095 169 99 2 1 166 39 201 3.01e-31 112
MS.gene46373.t1 MTR_1g115325 35.503 169 105 3 2 167 47 214 5.46e-31 111
MS.gene46373.t1 MTR_1g078200 39.370 127 77 0 1 127 45 171 5.73e-31 112
MS.gene46373.t1 MTR_2g075950 37.795 127 79 0 1 127 44 170 6.74e-31 111
MS.gene46373.t1 MTR_8g006970 39.695 131 79 0 1 131 53 183 7.11e-31 111
MS.gene46373.t1 MTR_8g006970 39.695 131 79 0 1 131 39 169 9.40e-31 110
MS.gene46373.t1 MTR_1g068740 42.188 128 73 1 2 128 47 174 1.40e-30 110
MS.gene46373.t1 MTR_1g068730 42.188 128 73 1 2 128 47 174 1.93e-30 110
MS.gene46373.t1 MTR_6g079550 39.837 123 74 0 2 124 44 166 2.24e-30 110
MS.gene46373.t1 MTR_1g090717 37.952 166 98 3 2 165 48 210 2.57e-30 109
MS.gene46373.t1 MTR_7g100020 42.188 128 73 1 2 128 47 174 3.16e-30 109
MS.gene46373.t1 MTR_1g062760 39.521 167 96 4 2 165 45 209 4.39e-30 109
MS.gene46373.t1 MTR_7g405790 39.370 127 77 0 1 127 46 172 1.22e-29 108
MS.gene46373.t1 MTR_7g051940 41.129 124 73 0 1 124 44 167 1.87e-29 107
MS.gene46373.t1 MTR_2g083860 36.220 127 81 0 1 127 44 170 2.39e-29 107
MS.gene46373.t1 MTR_2g090865 34.722 144 94 0 1 144 42 185 2.87e-29 107
MS.gene46373.t1 MTR_7g103070 37.870 169 96 5 2 165 48 212 1.40e-28 105
MS.gene46373.t1 MTR_4g069850 36.872 179 90 6 1 167 39 206 1.76e-28 105
MS.gene46373.t1 MTR_4g063160 36.310 168 103 3 2 165 47 214 2.41e-28 104
MS.gene46373.t1 MTR_3g064390 43.750 96 54 0 1 96 41 136 2.92e-28 103
MS.gene46373.t1 MTR_7g117910 39.091 110 67 0 1 110 51 160 1.10e-27 103
MS.gene46373.t1 MTR_4g012940 36.207 174 99 3 1 167 39 207 1.46e-27 102
MS.gene46373.t1 MTR_8g093740 42.188 128 72 2 2 127 44 171 1.68e-27 102
MS.gene46373.t1 MTR_8g093740 41.085 129 74 2 1 127 10 138 2.30e-27 101
MS.gene46373.t1 MTR_3g096350 42.188 128 72 2 2 127 43 170 4.45e-27 101
MS.gene46373.t1 MTR_2g096550 40.000 130 74 3 2 128 47 175 2.39e-26 99.8
MS.gene46373.t1 MTR_2g101890 35.632 174 100 3 1 167 41 209 4.70e-26 99.0
MS.gene46373.t1 MTR_7g103070 38.312 154 86 5 17 165 7 156 3.24e-25 95.1
MS.gene46373.t1 MTR_1g097420 32.184 174 106 3 1 167 39 207 4.02e-25 96.3
MS.gene46373.t1 MTR_1g029450 38.636 132 79 2 2 131 48 179 8.73e-25 95.5
MS.gene46373.t1 MTR_1g097420 32.184 174 106 3 1 167 66 234 8.93e-25 96.3
MS.gene46373.t1 MTR_8g107070 38.211 123 76 0 2 124 46 168 1.37e-23 93.6
MS.gene46373.t1 MTR_8g092020 32.402 179 97 7 1 167 43 209 2.97e-22 89.0
MS.gene46373.t1 MTR_1g068730 42.391 92 53 0 2 93 47 138 8.93e-22 86.7
MS.gene46373.t1 MTR_1g068740 42.391 92 53 0 2 93 47 138 1.04e-21 87.0
MS.gene46373.t1 MTR_3g096350 40.179 112 65 2 2 111 43 154 6.03e-19 79.0
MS.gene46373.t1 MTR_3g096350 42.268 97 52 3 1 93 42 138 2.14e-18 77.4
MS.gene46373.t1 MTR_3g107717 28.916 166 111 4 1 162 44 206 4.00e-18 78.2
MS.gene46373.t1 MTR_3g107707 28.834 163 109 4 1 159 44 203 5.83e-18 77.8
MS.gene46373.t1 MTR_3g107713 31.884 138 91 3 1 138 44 178 1.77e-17 76.6
MS.gene46373.t1 MTR_2g090875 36.364 132 71 4 5 124 40 170 2.77e-17 75.5
MS.gene46373.t1 MTR_3g078260 37.121 132 70 4 5 124 42 172 8.43e-17 74.7
MS.gene46373.t1 MTR_1452s0010 49.254 67 34 0 1 67 12 78 2.02e-16 70.9
MS.gene46373.t1 MTR_6g039490 31.618 136 84 3 1 128 39 173 2.15e-16 73.9
MS.gene46373.t1 MTR_4g113620 31.496 127 84 3 12 138 46 169 1.01e-15 71.6
MS.gene46373.t1 MTR_4g088055 35.606 132 72 4 5 124 40 170 1.06e-15 71.2
MS.gene46373.t1 MTR_8g075240 33.333 132 75 4 5 124 40 170 1.11e-15 71.2
MS.gene46373.t1 MTR_5g022600 32.576 132 76 4 5 124 40 170 6.42e-15 69.3
MS.gene46373.t1 MTR_6g087980 33.333 132 75 4 5 124 40 170 1.67e-14 68.6
MS.gene46373.t1 MTR_4g073250 31.818 132 77 4 5 124 40 170 2.13e-14 68.2
MS.gene46373.t1 MTR_1686s0010 41.791 67 39 0 1 67 12 78 8.25e-13 61.2
MS.gene46373.t1 MTR_5g092060 27.068 133 91 3 4 131 138 269 4.14e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46373.t1 AT2G44610 89.349 169 16 1 1 167 40 208 2.46e-109 310
MS.gene46373.t1 AT5G10260 83.929 168 26 1 1 167 40 207 4.93e-102 291
MS.gene46373.t1 AT2G22290 81.548 168 30 1 1 167 40 207 5.79e-98 281
MS.gene46373.t1 AT4G39890 78.846 156 31 2 2 155 41 196 1.75e-85 250
MS.gene46373.t1 AT5G64990 72.781 169 44 1 1 167 38 206 5.49e-85 248
MS.gene46373.t1 AT5G64990 69.886 176 44 2 1 167 38 213 3.33e-82 242
MS.gene46373.t1 AT5G45130 41.667 132 77 0 1 132 41 172 3.11e-38 129
MS.gene46373.t1 AT3G54840 46.212 132 70 1 2 132 31 162 5.52e-38 128
MS.gene46373.t1 AT3G54840 46.212 132 70 1 2 132 65 196 7.91e-38 129
MS.gene46373.t1 AT4G17160 44.615 130 72 0 2 131 38 167 8.13e-38 129
MS.gene46373.t1 AT5G45130 41.667 132 77 0 1 132 49 180 1.11e-37 128
MS.gene46373.t1 AT4G17170 37.640 178 91 3 2 165 38 209 1.72e-37 128
MS.gene46373.t1 AT4G19640 40.152 132 79 0 1 132 41 172 4.05e-37 127
MS.gene46373.t1 AT3G54840 46.774 124 65 1 2 124 65 188 9.92e-36 123
MS.gene46373.t1 AT4G35860 40.769 130 77 0 2 131 38 167 6.20e-35 121
MS.gene46373.t1 AT1G09630 41.732 127 74 0 1 127 43 169 1.00e-34 121
MS.gene46373.t1 AT3G11730 41.985 131 76 0 1 131 39 169 9.56e-34 118
MS.gene46373.t1 AT5G65270 37.008 127 80 0 1 127 48 174 2.46e-33 118
MS.gene46373.t1 AT3G12160 40.157 127 76 0 1 127 46 172 3.04e-33 117
MS.gene46373.t1 AT1G28550 33.523 176 105 2 1 166 44 217 8.79e-33 116
MS.gene46373.t1 AT1G07410 39.370 127 77 0 1 127 43 169 9.35e-33 116
MS.gene46373.t1 AT1G05810 37.209 172 103 2 1 167 43 214 1.52e-32 115
MS.gene46373.t1 AT5G60860 33.129 163 91 1 1 145 44 206 1.65e-32 115
MS.gene46373.t1 AT5G59150 37.405 131 82 0 1 131 43 173 3.91e-32 114
MS.gene46373.t1 AT1G05810 37.209 172 103 2 1 167 89 260 4.71e-32 115
MS.gene46373.t1 AT4G35860 41.525 118 69 0 14 131 4 121 4.72e-32 113
MS.gene46373.t1 AT3G46830 37.795 127 79 0 1 127 43 169 5.95e-32 114
MS.gene46373.t1 AT3G46830 37.795 127 79 0 1 127 43 169 5.95e-32 114
MS.gene46373.t1 AT4G39990 36.220 127 81 0 1 127 48 174 9.25e-32 114
MS.gene46373.t1 AT1G02130 39.695 131 79 0 1 131 39 169 9.48e-32 113
MS.gene46373.t1 AT3G15060 37.795 127 79 0 1 127 44 170 9.66e-32 113
MS.gene46373.t1 AT5G47200 40.458 131 78 0 1 131 39 169 1.03e-31 113
MS.gene46373.t1 AT4G17530 40.458 131 78 0 1 131 39 169 1.11e-31 113
MS.gene46373.t1 AT5G47520 39.370 127 77 0 1 127 45 171 1.31e-31 113
MS.gene46373.t1 AT5G47960 38.710 124 76 0 1 124 46 169 1.68e-31 113
MS.gene46373.t1 AT5G03530 37.725 167 102 2 2 166 44 210 2.21e-31 112
MS.gene46373.t1 AT5G03530 37.725 167 102 2 2 166 44 210 2.21e-31 112
MS.gene46373.t1 AT1G18200 42.276 123 71 0 2 124 45 167 2.24e-31 113
MS.gene46373.t1 AT3G09910 44.186 129 70 2 2 128 44 172 3.12e-31 112
MS.gene46373.t1 AT3G09910 44.186 129 70 2 2 128 44 172 3.12e-31 112
MS.gene46373.t1 AT3G09910 44.186 129 70 2 2 128 44 172 3.12e-31 112
MS.gene46373.t1 AT4G18430 37.795 127 79 0 1 127 44 170 4.17e-31 112
MS.gene46373.t1 AT3G09910 44.186 129 70 2 2 128 44 172 4.52e-31 111
MS.gene46373.t1 AT3G09910 44.186 129 70 2 2 128 44 172 4.52e-31 111
MS.gene46373.t1 AT2G31680 36.994 173 103 2 1 167 43 215 8.16e-31 111
MS.gene46373.t1 AT2G33870 31.818 176 108 2 1 166 44 217 1.80e-30 110
MS.gene46373.t1 AT1G16920 37.008 127 80 0 1 127 44 170 3.93e-30 109
MS.gene46373.t1 AT1G73640 39.837 123 74 0 2 124 45 167 4.40e-30 109
MS.gene46373.t1 AT3G46060 41.406 128 74 1 2 128 47 174 1.01e-29 108
MS.gene46373.t1 AT3G46060 41.406 128 74 1 2 128 47 174 1.01e-29 108
MS.gene46373.t1 AT3G46060 41.406 128 74 1 2 128 47 174 1.01e-29 108
MS.gene46373.t1 AT5G03520 34.756 164 105 2 4 165 49 212 1.12e-29 108
MS.gene46373.t1 AT5G59840 41.406 128 74 1 2 128 47 174 1.62e-29 107
MS.gene46373.t1 AT3G09900 37.647 170 97 3 4 166 49 216 2.00e-29 107
MS.gene46373.t1 AT2G43130 38.583 127 78 0 1 127 43 169 3.17e-29 107
MS.gene46373.t1 AT1G06400 37.795 127 79 0 1 127 44 170 3.39e-29 107
MS.gene46373.t1 AT3G53610 41.406 128 74 1 2 128 47 174 7.75e-29 106
MS.gene46373.t1 AT3G53610 41.406 128 74 1 2 128 47 174 7.75e-29 106
MS.gene46373.t1 AT3G53610 41.406 128 74 1 2 128 47 174 7.75e-29 106
MS.gene46373.t1 AT5G45750 35.433 127 82 0 1 127 44 170 8.01e-29 106
MS.gene46373.t1 AT5G03520 34.356 163 105 2 5 165 40 202 9.88e-29 105
MS.gene46373.t1 AT4G19640 41.237 97 57 0 1 97 41 137 4.30e-28 102
MS.gene46373.t1 AT1G01200 40.157 127 74 2 1 125 59 185 4.48e-28 104
MS.gene46373.t1 AT3G07410 41.129 124 73 0 1 124 43 166 5.40e-28 103
MS.gene46373.t1 AT1G43890 40.559 143 81 3 2 142 44 184 7.78e-28 103
MS.gene46373.t1 AT1G43890 40.559 143 81 3 2 142 44 184 7.78e-28 103
MS.gene46373.t1 AT1G43890 40.559 143 81 3 2 142 44 184 7.78e-28 103
MS.gene46373.t1 AT5G59150 37.288 118 74 0 14 131 5 122 1.09e-27 102
MS.gene46373.t1 AT4G18800 34.646 127 83 0 1 127 44 170 1.39e-27 102
MS.gene46373.t1 AT3G18820 37.430 179 89 6 1 167 39 206 2.96e-27 102
MS.gene46373.t1 AT1G52280 36.207 174 98 3 1 167 39 206 3.16e-27 101
MS.gene46373.t1 AT4G19640 41.667 96 56 0 1 96 41 136 4.40e-27 101
MS.gene46373.t1 AT3G16100 36.207 174 98 3 1 167 39 206 2.98e-25 96.7
MS.gene46373.t1 AT4G09720 32.759 174 104 6 1 167 5 172 6.17e-24 92.4
MS.gene46373.t1 AT4G09720 32.759 174 104 6 1 167 5 172 6.17e-24 92.4
MS.gene46373.t1 AT4G09720 32.759 174 104 6 1 167 5 172 6.17e-24 92.4
MS.gene46373.t1 AT4G09720 32.759 174 104 6 1 167 39 206 1.72e-23 92.0
MS.gene46373.t1 AT1G49300 35.556 180 91 7 1 167 39 206 2.78e-23 91.7
MS.gene46373.t1 AT1G49300 35.556 180 91 7 1 167 39 206 2.78e-23 91.7
MS.gene46373.t1 AT5G39620 33.708 178 98 6 1 167 36 204 8.32e-23 90.1
MS.gene46373.t1 AT1G22740 36.111 180 87 9 1 167 39 203 1.01e-22 90.1
MS.gene46373.t1 AT2G21880 33.889 180 99 7 1 167 15 187 2.16e-22 89.0
MS.gene46373.t1 AT2G21880 33.889 180 99 7 1 167 15 187 2.16e-22 89.0
MS.gene46373.t1 AT4G09720 31.844 179 104 6 1 167 39 211 3.57e-22 89.0
MS.gene46373.t1 AT2G21880 33.889 180 99 7 1 167 40 212 4.23e-22 88.6
MS.gene46373.t1 AT4G09720 30.811 185 104 6 1 167 39 217 2.18e-21 87.0
MS.gene46373.t1 AT5G55080 30.263 152 99 4 1 148 44 192 2.05e-18 79.3
MS.gene46373.t1 AT5G55190 28.834 163 109 4 1 159 44 203 5.22e-18 78.2
MS.gene46373.t1 AT5G20020 31.884 138 91 3 1 138 44 178 8.62e-18 77.4
MS.gene46373.t1 AT5G20010 31.884 138 91 3 1 138 44 178 1.02e-17 77.4
MS.gene46373.t1 AT2G44690 33.333 132 75 4 5 124 52 182 2.16e-17 76.3
MS.gene46373.t1 AT4G35020 33.333 132 75 4 5 124 40 170 4.07e-16 72.8
MS.gene46373.t1 AT4G35020 33.333 132 75 4 5 124 40 170 4.07e-16 72.8
MS.gene46373.t1 AT4G35020 33.333 132 75 4 5 124 40 170 4.07e-16 72.8
MS.gene46373.t1 AT3G48040 36.364 132 71 4 5 124 42 172 4.90e-16 72.8
MS.gene46373.t1 AT1G20090 32.576 132 76 4 5 124 39 169 1.91e-15 70.9
MS.gene46373.t1 AT1G75840 32.576 132 76 4 5 124 40 170 2.12e-15 70.9
MS.gene46373.t1 AT3G51300 33.333 132 75 4 5 124 40 170 2.34e-15 70.5
MS.gene46373.t1 AT5G62880 35.606 132 72 4 5 124 42 172 5.89e-15 69.7
MS.gene46373.t1 AT5G46025 38.554 83 50 1 46 127 20 102 9.10e-15 67.0
MS.gene46373.t1 AT3G51290 33.333 132 75 4 5 124 641 771 2.87e-14 70.1
MS.gene46373.t1 AT2G17800 32.576 132 76 4 5 124 40 170 2.92e-14 67.8
MS.gene46373.t1 AT2G17800 32.576 132 76 4 5 124 40 170 2.92e-14 67.8
MS.gene46373.t1 AT4G35950 32.576 132 76 4 5 124 40 170 3.67e-14 67.4
MS.gene46373.t1 AT5G45970 31.061 132 78 4 5 124 40 170 1.42e-13 65.9
MS.gene46373.t1 AT3G48040 35.772 123 66 4 5 115 42 163 2.06e-13 65.1
MS.gene46373.t1 AT4G28950 30.769 130 79 4 5 124 40 168 3.77e-13 65.1
MS.gene46373.t1 AT2G21880 30.000 180 98 8 1 167 40 204 1.08e-12 63.5
MS.gene46373.t1 AT5G62880 34.959 123 67 4 5 115 42 163 2.62e-12 62.4

Find 38 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCCACTTTGATGTGTTT+AGG 0.293139 8.4:-24011359 None:intergenic
GTTGATAGTGTTTCCATTCC+AGG 0.321883 8.4:-24013139 None:intergenic
GTCTTATTCCAAGCTACATT+AGG 0.335980 8.4:+24010571 MS.gene46373:CDS
AAAATTGCTGCTGCTTTGCC+TGG 0.361096 8.4:+24013121 MS.gene46373:CDS
CTTTATATTGAAGCCGGCTT+TGG 0.362026 8.4:-24012737 None:intergenic
TCTTATTCCAAGCTACATTA+GGG 0.382065 8.4:+24010572 MS.gene46373:CDS
ATGTTATTGTTGTTCTTGTT+GGG 0.382429 8.4:+24011409 MS.gene46373:CDS
TGCTGCTGCTTTGCCTGGAA+TGG 0.398521 8.4:+24013126 MS.gene46373:CDS
GAACTGTTCGGCTGCAGTTA+TGG 0.433601 8.4:+24009462 MS.gene46373:CDS
CAAAGCCGGCTTCAATATAA+AGG 0.435143 8.4:+24012738 MS.gene46373:CDS
GATGTTATTGTTGTTCTTGT+TGG 0.450051 8.4:+24011408 MS.gene46373:CDS
AGGCAAGTCTCCACGGAGGA+AGG 0.492452 8.4:+24012667 MS.gene46373:intron
GCAAGTCTCCACGGAGGAAG+GGG 0.501301 8.4:+24012669 MS.gene46373:CDS
TTGAAGAGGTGCGCAGTGAG+AGG 0.501744 8.4:+24011379 MS.gene46373:CDS
AAACTGACCTTGTGGAAAAG+AGG 0.510063 8.4:+24011436 MS.gene46373:CDS
GTGTACCTTTATATTGAAGC+CGG 0.511807 8.4:-24012743 None:intergenic
CATGACTCTCAACCTCAGTC+TGG 0.512275 8.4:+24013211 MS.gene46373:CDS
CATGGCTGGTAGAAGACCTC+AGG 0.512690 8.4:-24013192 None:intergenic
GGCAAGTCTCCACGGAGGAA+GGG 0.521811 8.4:+24012668 MS.gene46373:intron
GTGTAGGGATACAGCTGGAC+AGG 0.524147 8.4:+24010536 MS.gene46373:intron
GATGAGTCCCTAATGTAGCT+TGG 0.527952 8.4:-24010579 None:intergenic
ATTGAAGCTAGTGCCAAAGC+CGG 0.545119 8.4:+24012724 MS.gene46373:CDS
TGAAGAGGTGCGCAGTGAGA+GGG 0.545176 8.4:+24011380 MS.gene46373:CDS
CTTTGCTTCCCCTTCCTCCG+TGG 0.556434 8.4:-24012677 None:intergenic
GAAGAGGTGCGCAGTGAGAG+GGG 0.574190 8.4:+24011381 MS.gene46373:CDS
ATCTTGAAGATCGAACTGTT+CGG 0.579216 8.4:+24009450 MS.gene46373:CDS
GACTCTCAACCTCAGTCTGG+CGG 0.590457 8.4:+24013214 MS.gene46373:CDS
CAGACTGAGGTTGAGAGTCA+TGG 0.594134 8.4:-24013210 None:intergenic
CTTTCCTAAACACATCAAAG+TGG 0.596398 8.4:+24011355 MS.gene46373:CDS
ATTCTACAGGCAAGTCTCCA+CGG 0.605040 8.4:+24012660 MS.gene46373:intron
CATGTGTGTAGGGATACAGC+TGG 0.611173 8.4:+24010531 MS.gene46373:intron
CTGAGGTTGAGAGTCATGGC+TGG 0.612100 8.4:-24013206 None:intergenic
CACATCAAAGTGGATTGAAG+AGG 0.614834 8.4:+24011365 MS.gene46373:CDS
CAAGAACATCCGCCAGACTG+AGG 0.645056 8.4:-24013223 None:intergenic
AACCACAAAACAAGAAGACA+TGG 0.648075 8.4:+24013159 MS.gene46373:CDS
ACATGGTCGATGTGAACCTG+AGG 0.670721 8.4:+24013176 MS.gene46373:CDS
TGGGAACAAAACTGACCTTG+TGG 0.681829 8.4:+24011428 MS.gene46373:CDS
CTACAGGCAAGTCTCCACGG+AGG 0.828398 8.4:+24012663 MS.gene46373:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTATTTAATAATA+AGG + chr8.4:24010843-24010862 MS.gene46373:intron 0.0%
!! AATAAAAAAATAAAAACTCA+AGG - chr8.4:24010731-24010750 None:intergenic 10.0%
!! ATAATAATTAGTAATTAGAA+AGG - chr8.4:24011572-24011591 None:intergenic 10.0%
!!! AATACTTTTAATAAAAAAGA+GGG + chr8.4:24011076-24011095 MS.gene46373:intron 10.0%
!!! ATTATTTGTTTCTTAAAAAA+TGG + chr8.4:24010808-24010827 MS.gene46373:intron 10.0%
!!! TATTATCATTTTATCTTAAA+AGG - chr8.4:24011919-24011938 None:intergenic 10.0%
!!! TATTTTAACAAATTAACTTT+TGG + chr8.4:24009621-24009640 MS.gene46373:intron 10.0%
!!! TTATTTGTTTCTTAAAAAAT+GGG + chr8.4:24010809-24010828 MS.gene46373:intron 10.0%
!! ACTATTATTTCATTCTTTAA+AGG + chr8.4:24011668-24011687 MS.gene46373:intron 15.0%
!! AGTAAAAATATTATCTAGAA+TGG + chr8.4:24012129-24012148 MS.gene46373:intron 15.0%
!! TAAATTGTTAATAAAGCAAT+AGG - chr8.4:24010664-24010683 None:intergenic 15.0%
!! TTACTTTATAGCATAAAAAT+GGG + chr8.4:24010247-24010266 MS.gene46373:intron 15.0%
!! TTTACTTTATAGCATAAAAA+TGG + chr8.4:24010246-24010265 MS.gene46373:intron 15.0%
!!! ATTTGTTAAAATAATAGCAT+TGG - chr8.4:24009614-24009633 None:intergenic 15.0%
!!! CTTTAAATTTTAGAACTAAA+TGG - chr8.4:24010102-24010121 None:intergenic 15.0%
!!! GAATACTTTTAATAAAAAAG+AGG + chr8.4:24011075-24011094 MS.gene46373:intron 15.0%
!! ATAATTTATACAAGACAACA+AGG - chr8.4:24012425-24012444 None:intergenic 20.0%
!! GATAATTAAATTATGATGCT+TGG - chr8.4:24009942-24009961 None:intergenic 20.0%
!! GATTTACTAAGATATTGAAT+TGG + chr8.4:24010763-24010782 MS.gene46373:intron 20.0%
!! TGATATTTGTAAAATATGTG+TGG - chr8.4:24012784-24012803 None:intergenic 20.0%
!! TTGATGAATTTGGATAAATT+TGG + chr8.4:24012254-24012273 MS.gene46373:intron 20.0%
!! TTTATCAAACCTATTACTTT+AGG + chr8.4:24013087-24013106 MS.gene46373:intron 20.0%
!!! CATGTTTTAATACTATTTCT+AGG - chr8.4:24012187-24012206 None:intergenic 20.0%
!!! GATAATATTCCTTTTATATG+TGG - chr8.4:24012229-24012248 None:intergenic 20.0%
!!! TAATTTGCATATTAAAGAAG+TGG - chr8.4:24009910-24009929 None:intergenic 20.0%
!!! TGTGTTATTTTTCTTTTGTT+TGG + chr8.4:24010945-24010964 MS.gene46373:intron 20.0%
! AAACTAAAATAACTTCAGTG+TGG - chr8.4:24009733-24009752 None:intergenic 25.0%
! AACTAAAATAACTTCAGTGT+GGG - chr8.4:24009732-24009751 None:intergenic 25.0%
! AACTGCAGAATATTCAAAAA+TGG - chr8.4:24009503-24009522 None:intergenic 25.0%
! AAGTAAGACATAAACCAAAA+AGG - chr8.4:24010374-24010393 None:intergenic 25.0%
! AATTATCTATAGCATCTCAT+TGG - chr8.4:24012569-24012588 None:intergenic 25.0%
! AGGTAATGAATAATCAATTG+TGG + chr8.4:24011456-24011475 MS.gene46373:intron 25.0%
! ATATATCTTTACATATGCTC+AGG - chr8.4:24009800-24009819 None:intergenic 25.0%
! ATTATCTATAGCATCTCATT+GGG - chr8.4:24012568-24012587 None:intergenic 25.0%
! ATTATGAGTTGCATCTAATA+AGG - chr8.4:24009667-24009686 None:intergenic 25.0%
! GAAAAAACAGAGAAAGAAAA+GGG - chr8.4:24011025-24011044 None:intergenic 25.0%
! GAAATTCATAAAATTGGCAA+TGG - chr8.4:24011232-24011251 None:intergenic 25.0%
! GGAGGATAATTAATGTTTAA+TGG + chr8.4:24011765-24011784 MS.gene46373:intron 25.0%
! GTTAGAATACTTAAAAGCAA+CGG - chr8.4:24010207-24010226 None:intergenic 25.0%
! TAAAATTGGCAATGGATAAT+AGG - chr8.4:24011224-24011243 None:intergenic 25.0%
! TAACTATCACCTATTTAGTT+AGG - chr8.4:24011826-24011845 None:intergenic 25.0%
! TAGTATACCAAATAGATCAT+TGG - chr8.4:24010000-24010019 None:intergenic 25.0%
! TATGAAGTTCCTAACTAAAT+AGG + chr8.4:24011814-24011833 MS.gene46373:intron 25.0%
! TATTCTTTACATGATTCTAC+AGG + chr8.4:24012647-24012666 MS.gene46373:intron 25.0%
! TCACTTTAAATACCAAATCT+AGG + chr8.4:24012588-24012607 MS.gene46373:intron 25.0%
! TCCAGAGAAATTCATAAAAT+TGG - chr8.4:24011238-24011257 None:intergenic 25.0%
! TGTGGAAAATTGTAATAAGT+TGG - chr8.4:24012966-24012985 None:intergenic 25.0%
! TTTAATTATGAATGAGATGC+TGG + chr8.4:24010286-24010305 MS.gene46373:intron 25.0%
! TTTATCCAAATTCATCAAGT+CGG - chr8.4:24012252-24012271 None:intergenic 25.0%
! TTTGTTTCCAATGATCTATT+TGG + chr8.4:24009990-24010009 MS.gene46373:intron 25.0%
!! ATGTTATTGTTGTTCTTGTT+GGG + chr8.4:24011409-24011428 MS.gene46373:CDS 25.0%
!! TCTAAAATGAAGCTATGAAT+GGG + chr8.4:24009584-24009603 MS.gene46373:intron 25.0%
!! TTTTGAATATTCTGCAGTTA+CGG + chr8.4:24009504-24009523 MS.gene46373:intron 25.0%
!!! TCTTGAGAATTTCTAGTTTT+TGG - chr8.4:24011177-24011196 None:intergenic 25.0%
AAGACATAGAGAAAGTTTAC+GGG + chr8.4:24011599-24011618 MS.gene46373:intron 30.0%
AAGGAAAAAAATGCAAAACG+AGG - chr8.4:24011553-24011572 None:intergenic 30.0%
ACTGCTGTAATGCTTATATA+TGG - chr8.4:24010459-24010478 None:intergenic 30.0%
AGAAGTGGATGAGAATAAAA+AGG - chr8.4:24009895-24009914 None:intergenic 30.0%
AGAGATATATCCAGTGAAAA+GGG + chr8.4:24012097-24012116 MS.gene46373:intron 30.0%
ATAAACCAAAAAGGCAAAGT+AGG - chr8.4:24010365-24010384 None:intergenic 30.0%
CAAGACATAGAGAAAGTTTA+CGG + chr8.4:24011598-24011617 MS.gene46373:intron 30.0%
CGTAAATAGAAAGGGTTATA+CGG - chr8.4:24011960-24011979 None:intergenic 30.0%
CTCAAAGGAATAACACTTAA+AGG - chr8.4:24010879-24010898 None:intergenic 30.0%
CTCTAACAGATAGCTTATAT+TGG + chr8.4:24011484-24011503 MS.gene46373:intron 30.0%
CTGTAATGCTTATATATGGA+TGG - chr8.4:24010455-24010474 None:intergenic 30.0%
GAGAAAATTATGCAAGAATC+TGG + chr8.4:24011988-24012007 MS.gene46373:intron 30.0%
GGAAAAAACAGAGAAAGAAA+AGG - chr8.4:24011026-24011045 None:intergenic 30.0%
GGGAACTATAAATATAGAGT+AGG - chr8.4:24012548-24012567 None:intergenic 30.0%
GTATTCACTCACTTTAATGT+AGG - chr8.4:24011061-24011080 None:intergenic 30.0%
GTGAATATGGAAAGAAAATG+TGG + chr8.4:24011100-24011119 MS.gene46373:intron 30.0%
TAAAAAAGAGGGAGTGAATA+TGG + chr8.4:24011087-24011106 MS.gene46373:intron 30.0%
TAATGCAGCGTAAATAGAAA+GGG - chr8.4:24011968-24011987 None:intergenic 30.0%
TAATGTAGGCTAACAAAGAA+GGG - chr8.4:24011047-24011066 None:intergenic 30.0%
TAATTCCTTGCACTTATCTT+AGG - chr8.4:24012295-24012314 None:intergenic 30.0%
TATAAGCTATCTGTTAGAGT+AGG - chr8.4:24011483-24011502 None:intergenic 30.0%
TCTTATTCCAAGCTACATTA+GGG + chr8.4:24010572-24010591 MS.gene46373:CDS 30.0%
TTAATGTAGGCTAACAAAGA+AGG - chr8.4:24011048-24011067 None:intergenic 30.0%
TTATCCAAATTCATCAAGTC+GGG - chr8.4:24012251-24012270 None:intergenic 30.0%
! CAATTTAAGGCTTGAAAAAG+CGG - chr8.4:24011854-24011873 None:intergenic 30.0%
! GATGTTATTGTTGTTCTTGT+TGG + chr8.4:24011408-24011427 MS.gene46373:CDS 30.0%
! GCCAATTTTATGAATTTCTC+TGG + chr8.4:24011234-24011253 MS.gene46373:intron 30.0%
! GGAATTCTAGAGACAATTTA+AGG - chr8.4:24011867-24011886 None:intergenic 30.0%
! GTCTAAAATGAAGCTATGAA+TGG + chr8.4:24009583-24009602 MS.gene46373:intron 30.0%
! TACCAAATCTAGGATAAAAG+AGG + chr8.4:24012598-24012617 MS.gene46373:intron 30.0%
! TCCAGTTTTCACATTTTCAA+GGG + chr8.4:24010984-24011003 MS.gene46373:intron 30.0%
! TTATGACACCCTTATGATTT+TGG + chr8.4:24012477-24012496 MS.gene46373:intron 30.0%
! TTATTCCTACTTTGCCTTTT+TGG + chr8.4:24010357-24010376 MS.gene46373:intron 30.0%
!!! ATTTGCTTGTTTTACATACC+TGG + chr8.4:24013041-24013060 MS.gene46373:intron 30.0%
AAAACAGAGAAAGAAAAGGG+AGG - chr8.4:24011022-24011041 None:intergenic 35.0%
AAATATGTGTGGCAACAGAA+AGG - chr8.4:24012773-24012792 None:intergenic 35.0%
AAATCTTGCAAAGTCACCTT+TGG - chr8.4:24012506-24012525 None:intergenic 35.0%
AAATTGCCTAGCATTGTCTT+GGG + chr8.4:24012829-24012848 MS.gene46373:intron 35.0%
AACCACAAAACAAGAAGACA+TGG + chr8.4:24013159-24013178 MS.gene46373:CDS 35.0%
AAGACAATGCTAGGCAATTT+AGG - chr8.4:24012829-24012848 None:intergenic 35.0%
AATATGTGTGGCAACAGAAA+GGG - chr8.4:24012772-24012791 None:intergenic 35.0%
AATCTTGCAAAGTCACCTTT+GGG - chr8.4:24012505-24012524 None:intergenic 35.0%
AATTGAGTCGATCATTCTCA+AGG - chr8.4:24011888-24011907 None:intergenic 35.0%
AATTTGTGTTCCATGTGTGT+AGG + chr8.4:24010520-24010539 MS.gene46373:intron 35.0%
ACTAAAGCCAGGAGAAATAT+TGG - chr8.4:24012356-24012375 None:intergenic 35.0%
ACTCCGTATTCTTATGATGT+AGG + chr8.4:24011324-24011343 MS.gene46373:intron 35.0%
ACTTAAAAGCAACGGCAAAT+GGG - chr8.4:24010199-24010218 None:intergenic 35.0%
ATACGGATGTCTGATATATG+AGG - chr8.4:24011943-24011962 None:intergenic 35.0%
ATCATCCTAAGATAAGTGCA+AGG + chr8.4:24012287-24012306 MS.gene46373:intron 35.0%
ATCTTGAAGATCGAACTGTT+CGG + chr8.4:24009450-24009469 MS.gene46373:CDS 35.0%
ATGTTGGAATCTGCAACATT+TGG + chr8.4:24010314-24010333 MS.gene46373:intron 35.0%
ATTAGGGAAGAAAATAGAGG+GGG + chr8.4:24009538-24009557 MS.gene46373:intron 35.0%
ATTATCCTCCTTTGAATGCT+TGG - chr8.4:24011755-24011774 None:intergenic 35.0%
ATTTGTGTTCCATGTGTGTA+GGG + chr8.4:24010521-24010540 MS.gene46373:intron 35.0%
CAATCCACTTTGATGTGTTT+AGG - chr8.4:24011362-24011381 None:intergenic 35.0%
CAGTATCACCTAATTGATAG+AGG - chr8.4:24011149-24011168 None:intergenic 35.0%
CAGTGAGATTCAGAACTAAA+TGG - chr8.4:24010171-24010190 None:intergenic 35.0%
CATATTGACAAACTAGAGTG+AGG + chr8.4:24010414-24010433 MS.gene46373:intron 35.0%
CATTAGGGAAGAAAATAGAG+GGG + chr8.4:24009537-24009556 MS.gene46373:intron 35.0%
CGACCTACATCATAAGAATA+CGG - chr8.4:24011330-24011349 None:intergenic 35.0%
CTAATGCAGCGTAAATAGAA+AGG - chr8.4:24011969-24011988 None:intergenic 35.0%
CTTTCCTAAACACATCAAAG+TGG + chr8.4:24011355-24011374 MS.gene46373:CDS 35.0%
GAGAGATATATCCAGTGAAA+AGG + chr8.4:24012096-24012115 MS.gene46373:intron 35.0%
GCATACAAGAAGCTAATTTG+TGG - chr8.4:24012984-24013003 None:intergenic 35.0%
GCATTAGGGAAGAAAATAGA+GGG + chr8.4:24009536-24009555 MS.gene46373:intron 35.0%
GTGGATGAGAATAAAAAGGA+TGG - chr8.4:24009891-24009910 None:intergenic 35.0%
GTGTACCTTTATATTGAAGC+CGG - chr8.4:24012746-24012765 None:intergenic 35.0%
TAAATTGCCTAGCATTGTCT+TGG + chr8.4:24012828-24012847 MS.gene46373:intron 35.0%
TACTTAAAAGCAACGGCAAA+TGG - chr8.4:24010200-24010219 None:intergenic 35.0%
TCAAATTAAATGCCAAGACC+AGG - chr8.4:24013062-24013081 None:intergenic 35.0%
TCCTTTGAGCAATATGTATG+TGG + chr8.4:24010890-24010909 MS.gene46373:intron 35.0%
TGCAAAGTGCAATCAAAAGT+TGG + chr8.4:24012927-24012946 MS.gene46373:intron 35.0%
TGCTGAAGACCACATATAAA+AGG + chr8.4:24012217-24012236 MS.gene46373:intron 35.0%
TGTTGGAATCTGCAACATTT+GGG + chr8.4:24010315-24010334 MS.gene46373:intron 35.0%
TTATATGTGGTCTTCAGCAA+GGG - chr8.4:24012216-24012235 None:intergenic 35.0%
TTTATATGTGGTCTTCAGCA+AGG - chr8.4:24012217-24012236 None:intergenic 35.0%
TTTGGGTGCCAAAATCATAA+GGG - chr8.4:24012488-24012507 None:intergenic 35.0%
! AAAGTCTTTTGCCTTTGTCT+CGG + chr8.4:24010118-24010137 MS.gene46373:intron 35.0%
! CACCTCTTTTATCCTAGATT+TGG - chr8.4:24012603-24012622 None:intergenic 35.0%
! CATTCTTTAAAGGCAAGACT+GGG + chr8.4:24011678-24011697 MS.gene46373:intron 35.0%
! GTCCAGTTTTCACATTTTCA+AGG + chr8.4:24010983-24011002 MS.gene46373:intron 35.0%
! GTCTTATTCCAAGCTACATT+AGG + chr8.4:24010571-24010590 MS.gene46373:CDS 35.0%
! TCATTCTTTAAAGGCAAGAC+TGG + chr8.4:24011677-24011696 MS.gene46373:intron 35.0%
! TGTTATCTTGAGCTTTTGAC+TGG + chr8.4:24009755-24009774 MS.gene46373:intron 35.0%
! TTATCCCGACTTGATGAATT+TGG + chr8.4:24012244-24012263 MS.gene46373:intron 35.0%
! TTCATTACCTCTTTTCCACA+AGG - chr8.4:24011446-24011465 None:intergenic 35.0%
!! TCACTTTTCAAGAACACTGT+GGG + chr8.4:24011288-24011307 MS.gene46373:intron 35.0%
!! TTCACTTTTCAAGAACACTG+TGG + chr8.4:24011287-24011306 MS.gene46373:intron 35.0%
!! TTGTTTTACATACCTGGTCT+TGG + chr8.4:24013047-24013066 MS.gene46373:intron 35.0%
!!! CAAGAATCTGGTTTTACTGA+AGG + chr8.4:24012000-24012019 MS.gene46373:intron 35.0%
AAACATCGCCAAGCATTCAA+AGG + chr8.4:24011744-24011763 MS.gene46373:intron 40.0%
AAACTGACCTTGTGGAAAAG+AGG + chr8.4:24011436-24011455 MS.gene46373:CDS 40.0%
AAGGAGACCAATATTTCTCC+TGG + chr8.4:24012346-24012365 MS.gene46373:intron 40.0%
AATATTCTGCAGTTACGGTG+AGG + chr8.4:24009509-24009528 MS.gene46373:intron 40.0%
ACATAGCTTTCATGCAAGTG+AGG + chr8.4:24009850-24009869 MS.gene46373:intron 40.0%
ATATGTGTGGCAACAGAAAG+GGG - chr8.4:24012771-24012790 None:intergenic 40.0%
CATAGCTTTCATGCAAGTGA+GGG + chr8.4:24009851-24009870 MS.gene46373:intron 40.0%
CTCGGACATAAATCAGATTC+TGG + chr8.4:24010136-24010155 MS.gene46373:intron 40.0%
CTGATTTATGTCCGAGACAA+AGG - chr8.4:24010132-24010151 None:intergenic 40.0%
CTTGGGTGAGATGTTTCAAA+TGG + chr8.4:24012846-24012865 MS.gene46373:intron 40.0%
CTTTAGTAGCGTGAATAGGT+TGG + chr8.4:24012369-24012388 MS.gene46373:intron 40.0%
CTTTGGGTGCCAAAATCATA+AGG - chr8.4:24012489-24012508 None:intergenic 40.0%
GCCACATACATATTGCTCAA+AGG - chr8.4:24010894-24010913 None:intergenic 40.0%
GCCCTTGAAAATGTGAAAAC+TGG - chr8.4:24010988-24011007 None:intergenic 40.0%
GGCATTAGGGAAGAAAATAG+AGG + chr8.4:24009535-24009554 MS.gene46373:intron 40.0%
GTTGGAATCTGCAACATTTG+GGG + chr8.4:24010316-24010335 MS.gene46373:intron 40.0%
TAAAGGCAAGACTGGGATAT+GGG + chr8.4:24011685-24011704 MS.gene46373:intron 40.0%
TTAAAGGCAAGACTGGGATA+TGG + chr8.4:24011684-24011703 MS.gene46373:intron 40.0%
TTAGGGAAGAAAATAGAGGG+GGG + chr8.4:24009539-24009558 MS.gene46373:intron 40.0%
! ACACAGACGAAGTATCACAA+TGG - chr8.4:24012395-24012414 None:intergenic 40.0%
! CAAAGCCGGCTTCAATATAA+AGG + chr8.4:24012738-24012757 MS.gene46373:CDS 40.0%
! CTTTATATTGAAGCCGGCTT+TGG - chr8.4:24012740-24012759 None:intergenic 40.0%
! GCAAAGCAGCAGCAATTTTT+CGG - chr8.4:24013120-24013139 None:intergenic 40.0%
! GCTTATATTGGTCTGCTTCA+TGG + chr8.4:24011496-24011515 MS.gene46373:intron 40.0%
!! AGCAGCAATTTTTCGGAACA+GGG - chr8.4:24013113-24013132 None:intergenic 40.0%
!! ATAAAGCCCAAGAAAGTACC+AGG - chr8.4:24012036-24012055 None:intergenic 40.0%
!! CACATCAAAGTGGATTGAAG+AGG + chr8.4:24011365-24011384 MS.gene46373:CDS 40.0%
!! CTTATGATTTTGGCACCCAA+AGG + chr8.4:24012487-24012506 MS.gene46373:intron 40.0%
!! GTTGATAGTGTTTCCATTCC+AGG - chr8.4:24013142-24013161 None:intergenic 40.0%
!! TAAAGCCCAAGAAAGTACCA+GGG - chr8.4:24012035-24012054 None:intergenic 40.0%
!!! GACCATGTCTTCTTGTTTTG+TGG - chr8.4:24013164-24013183 None:intergenic 40.0%
!!! GGCTTTGTGCATTTTTTGTG+TGG + chr8.4:24012150-24012169 MS.gene46373:intron 40.0%
ACAGAGAAAGAAAAGGGAGG+AGG - chr8.4:24011019-24011038 None:intergenic 45.0%
AGAAAGAAAAGGGAGGAGGA+AGG - chr8.4:24011015-24011034 None:intergenic 45.0%
ATCTCACCCAAGACAATGCT+AGG - chr8.4:24012838-24012857 None:intergenic 45.0%
ATTCTACAGGCAAGTCTCCA+CGG + chr8.4:24012660-24012679 MS.gene46373:intron 45.0%
ATTGAAGCTAGTGCCAAAGC+CGG + chr8.4:24012724-24012743 MS.gene46373:CDS 45.0%
CATTGCCCTGGTACTTTCTT+GGG + chr8.4:24012027-24012046 MS.gene46373:intron 45.0%
CCTGTGATAGTACTACGAGA+AGG + chr8.4:24012327-24012346 MS.gene46373:intron 45.0%
CCTTCTCGTAGTACTATCAC+AGG - chr8.4:24012330-24012349 None:intergenic 45.0%
CTATTCACGCTACTAAAGCC+AGG - chr8.4:24012367-24012386 None:intergenic 45.0%
GATGAGTCCCTAATGTAGCT+TGG - chr8.4:24010582-24010601 None:intergenic 45.0%
GCTGCAGTTATGGTAAGATG+TGG + chr8.4:24009472-24009491 MS.gene46373:intron 45.0%
GGAACAGGGCCTAAAGTAAT+AGG - chr8.4:24013099-24013118 None:intergenic 45.0%
TACGGTGAGGAATGGCATTA+GGG + chr8.4:24009522-24009541 MS.gene46373:intron 45.0%
TAGGGAAGAAAATAGAGGGG+GGG + chr8.4:24009540-24009559 MS.gene46373:intron 45.0%
TATCCAGTGAAAAGGGAGCA+AGG + chr8.4:24012104-24012123 MS.gene46373:intron 45.0%
TGAGATGCTGGAAGTCATGT+TGG + chr8.4:24010298-24010317 MS.gene46373:intron 45.0%
TGGCAATGGATAATAGGCAG+CGG - chr8.4:24011218-24011237 None:intergenic 45.0%
TGGGAACAAAACTGACCTTG+TGG + chr8.4:24011428-24011447 MS.gene46373:CDS 45.0%
TTACGGTGAGGAATGGCATT+AGG + chr8.4:24009521-24009540 MS.gene46373:intron 45.0%
!! AAAATTGCTGCTGCTTTGCC+TGG + chr8.4:24013121-24013140 MS.gene46373:CDS 45.0%
!! CAGCAGCAATTTTTCGGAAC+AGG - chr8.4:24013114-24013133 None:intergenic 45.0%
!! CTGGCTTTAGTAGCGTGAAT+AGG + chr8.4:24012365-24012384 MS.gene46373:intron 45.0%
!! TGGAGGCACCTCTATCAATT+AGG + chr8.4:24011138-24011157 MS.gene46373:intron 45.0%
!! ATATATAAAAATACTAAATT+TGG + chr8.4:24009814-24009833 MS.gene46373:intron 5.0%
!! TATATAAAAATACTAAATTT+GGG + chr8.4:24009815-24009834 MS.gene46373:intron 5.0%
!!! TTTTTATTTTTTTATTTTTC+TGG + chr8.4:24010735-24010754 MS.gene46373:intron 5.0%
ACATGGTCGATGTGAACCTG+AGG + chr8.4:24013176-24013195 MS.gene46373:CDS 50.0%
CAGACTGAGGTTGAGAGTCA+TGG - chr8.4:24013213-24013232 None:intergenic 50.0%
CAGCTGTATCCCTACACACA+TGG - chr8.4:24010533-24010552 None:intergenic 50.0%
CATCGCCAAGCATTCAAAGG+AGG + chr8.4:24011747-24011766 MS.gene46373:intron 50.0%
CATGACTCTCAACCTCAGTC+TGG + chr8.4:24013211-24013230 MS.gene46373:CDS 50.0%
CATGTGTGTAGGGATACAGC+TGG + chr8.4:24010531-24010550 MS.gene46373:intron 50.0%
GAACTGTTCGGCTGCAGTTA+TGG + chr8.4:24009462-24009481 MS.gene46373:CDS 50.0%
GCATTGCCCTGGTACTTTCT+TGG + chr8.4:24012026-24012045 MS.gene46373:intron 50.0%
TCTGCAGTTACGGTGAGGAA+TGG + chr8.4:24009514-24009533 MS.gene46373:intron 50.0%
! AAAATAGAGGGGGGGTGCAA+GGG + chr8.4:24009548-24009567 MS.gene46373:intron 50.0%
! TGACCTTGCTCCCTTTTCAC+TGG - chr8.4:24012110-24012129 None:intergenic 50.0%
ACTGAAGGACTGCATTGCCC+TGG + chr8.4:24012015-24012034 MS.gene46373:intron 55.0%
CAAGAACATCCGCCAGACTG+AGG - chr8.4:24013226-24013245 None:intergenic 55.0%
CATGGCTGGTAGAAGACCTC+AGG - chr8.4:24013195-24013214 None:intergenic 55.0%
CTGAGGTTGAGAGTCATGGC+TGG - chr8.4:24013209-24013228 None:intergenic 55.0%
GACTCTCAACCTCAGTCTGG+CGG + chr8.4:24013214-24013233 MS.gene46373:CDS 55.0%
GGATAATAGGCAGCGGCTGT+TGG - chr8.4:24011211-24011230 None:intergenic 55.0%
GTGTAGGGATACAGCTGGAC+AGG + chr8.4:24010536-24010555 MS.gene46373:intron 55.0%
TGCCTCCAACACACTGAGGA+AGG - chr8.4:24011126-24011145 None:intergenic 55.0%
TGTGGCCTTCCTCAGTGTGT+TGG + chr8.4:24011118-24011137 MS.gene46373:intron 55.0%
TGTGTGGCAACAGAAAGGGG+AGG - chr8.4:24012768-24012787 None:intergenic 55.0%
! AAATAGAGGGGGGGTGCAAG+GGG + chr8.4:24009549-24009568 MS.gene46373:intron 55.0%
! GAAAATAGAGGGGGGGTGCA+AGG + chr8.4:24009547-24009566 MS.gene46373:intron 55.0%
! TGAAGAGGTGCGCAGTGAGA+GGG + chr8.4:24011380-24011399 MS.gene46373:CDS 55.0%
! TTGAAGAGGTGCGCAGTGAG+AGG + chr8.4:24011379-24011398 MS.gene46373:CDS 55.0%
!! TGCTGCTGCTTTGCCTGGAA+TGG + chr8.4:24013126-24013145 MS.gene46373:CDS 55.0%
AGGCAAGTCTCCACGGAGGA+AGG + chr8.4:24012667-24012686 MS.gene46373:intron 60.0%
AGGCAGCGGCTGTTGGAGAA+AGG - chr8.4:24011204-24011223 None:intergenic 60.0%
CTACAGGCAAGTCTCCACGG+AGG + chr8.4:24012663-24012682 MS.gene46373:intron 60.0%
CTTTGCTTCCCCTTCCTCCG+TGG - chr8.4:24012680-24012699 None:intergenic 60.0%
GCAAGTCTCCACGGAGGAAG+GGG + chr8.4:24012669-24012688 MS.gene46373:CDS 60.0%
GGCAAGTCTCCACGGAGGAA+GGG + chr8.4:24012668-24012687 MS.gene46373:intron 60.0%
GGCCTTCCTCAGTGTGTTGG+AGG + chr8.4:24011121-24011140 MS.gene46373:intron 60.0%
! GAAGAGGTGCGCAGTGAGAG+GGG + chr8.4:24011381-24011400 MS.gene46373:CDS 60.0%
! GAGGTGCCTCCAACACACTG+AGG - chr8.4:24011130-24011149 None:intergenic 60.0%
! GGTGCAAGGGGCGCATTGTT+TGG + chr8.4:24009561-24009580 MS.gene46373:intron 60.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 24009413 24013249 24009413 ID=MS.gene46373
chr8.4 mRNA 24009413 24013249 24009413 ID=MS.gene46373.t1;Parent=MS.gene46373
chr8.4 exon 24009413 24009483 24009413 ID=MS.gene46373.t1.exon1;Parent=MS.gene46373.t1
chr8.4 CDS 24009413 24009483 24009413 ID=cds.MS.gene46373.t1;Parent=MS.gene46373.t1
chr8.4 exon 24010542 24010630 24010542 ID=MS.gene46373.t1.exon2;Parent=MS.gene46373.t1
chr8.4 CDS 24010542 24010630 24010542 ID=cds.MS.gene46373.t1;Parent=MS.gene46373.t1
chr8.4 exon 24011346 24011457 24011346 ID=MS.gene46373.t1.exon3;Parent=MS.gene46373.t1
chr8.4 CDS 24011346 24011457 24011346 ID=cds.MS.gene46373.t1;Parent=MS.gene46373.t1
chr8.4 exon 24012669 24012759 24012669 ID=MS.gene46373.t1.exon4;Parent=MS.gene46373.t1
chr8.4 CDS 24012669 24012759 24012669 ID=cds.MS.gene46373.t1;Parent=MS.gene46373.t1
chr8.4 exon 24013109 24013249 24013109 ID=MS.gene46373.t1.exon5;Parent=MS.gene46373.t1
chr8.4 CDS 24013109 24013249 24013109 ID=cds.MS.gene46373.t1;Parent=MS.gene46373.t1
Gene Sequence

>MS.gene46373

GCTACAATCGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGGCTGCAGTTATGGTAAGATGTGGCTTGACCATTTTTGAATATTCTGCAGTTACGGTGAGGAATGGCATTAGGGAAGAAAATAGAGGGGGGGTGCAAGGGGCGCATTGTTTGGTCTAAAATGAAGCTATGAATGGGATCGCCAATGCTATTATTTTAACAAATTAACTTTTGGCAATTCTAGCATGAGTAGTTCCTTATTAGATGCAACTCATAATAAACTAATATACATTAACAGAACAATTGAAAATACAACAAAACCCACACTGAAGTTATTTTAGTTTAGTGTTATCTTGAGCTTTTGACTGGTCTCTCTAATTTTGCTTTTCCTGAGCATATGTAAAGATATATAAAAATACTAAATTTGGGAATATTGTTAACACATAGCTTTCATGCAAGTGAGGGAAGAATAATCTTTTCCATCCTTTTTATTCTCATCCACTTCTTTAATATGCAAATTATTGAACTGTCCAAGCATCATAATTTAATTATCACGTTTCTTCTGTATGTTGTGCTTTATTTTTGTTTCCAATGATCTATTTGGTATACTAAGTAAGTGAATTTGTGAAGATGTGATAATTTATGAATGATCACATCAAAGTTCTTTCATTGATCTTTTTGAAAATTTATCCATTTAGTTCTAAAATTTAAAGTCTTTTGCCTTTGTCTCGGACATAAATCAGATTCTGGAAATTTTTTCCATTTAGTTCTGAATCTCACTGTAATACCCATTTGCCGTTGCTTTTAAGTATTCTAACTTTATGCGTTTATTTTTATTTTACTTTATAGCATAAAAATGGGTTTTAAATTTGATTGATTTAATTATGAATGAGATGCTGGAAGTCATGTTGGAATCTGCAACATTTGGGGTTTATAGTTTTAAATTTTTTATTCCTACTTTGCCTTTTTGGTTTATGTCTTACTTCAAATGTTAAAAAATTGATGCATATTGACAAACTAGAGTGAGGTTCAAGTGTTACTTTCCATCCATATATAAGCATTACAGCAGTACTGTATTATTGAATTACTTTTATTTTATCTCAAAATCTTAAATTTGTGTTCCATGTGTGTAGGGATACAGCTGGACAGGAGAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTTGCTGTCATCGTTTATGATGTTGCAAGTATGACATTTAAATATGCTCTCTTTTTCACCTATTGCTTTATTAACAATTTATATTTTCATGCAGATTCTGCATTACAATAATATATCAACAGTCACCTTGAGTTTTTATTTTTTTATTTTTCTGGATGCTGATTTACTAAGATATTGAATTGGATGTGTTTCGAGTTTCTAATTCATTATTTGTTTCTTAAAAAATGGGAAGAGTTTTTTATTTTTTTTATTTAATAATAAGGAAGTGTTATTCCTTTAAGTGTTATTCCTTTGAGCAATATGTATGTGGCATCTGAAATAAATAACTATTTTCAATGTATTTGTGTTATTTTTCTTTTGTTTGGATATGAGTAAAAAATGTCCAGTTTTCACATTTTCAAGGGCAAAGCCTTCCTCCTCCCTTTTCTTTCTCTGTTTTTTCCCTTCTTTGTTAGCCTACATTAAAGTGAGTGAATACTTTTAATAAAAAAGAGGGAGTGAATATGGAAAGAAAATGTGGCCTTCCTCAGTGTGTTGGAGGCACCTCTATCAATTAGGTGATACTGACATGCCAAAAACTAGAAATTCTCAAGAAGTTCCTTTCTCCAACAGCCGCTGCCTATTATCCATTGCCAATTTTATGAATTTCTCTGGATGACTCAAGTATTTTCACATGATTCTTTGTTCACTTTTCAAGAACACTGTGGGATGCTTTCTGATTACTCCGTATTCTTATGATGTAGGTCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGAGAGGGGAAGTGATGTTATTGTTGTTCTTGTTGGGAACAAAACTGACCTTGTGGAAAAGAGGTAATGAATAATCAATTGTGGACCTACTCTAACAGATAGCTTATATTGGTCTGCTTCATGGCACAGCTGTTTTGTTCTCTCTTATCTAGTGACCTCGTTTTGCATTTTTTTCCTTTCTAATTACTAATTATTATCTAATTCAAGACATAGAGAAAGTTTACGGGTTAGTTATGAACAAATTGTGATTGTTACAACTACAGTGCTACACAAACTATTATTTCATTCTTTAAAGGCAAGACTGGGATATGGGAGAATAATACTGTGTGCAGTAGACTATAGATAATTGAAACATCGCCAAGCATTCAAAGGAGGATAATTAATGTTTAATGGTAATTTGAGTTATACATTGATTAAGATATGAAGTTCCTAACTAAATAGGTGATAGTTACTGTTCCGCTTTTTCAAGCCTTAAATTGTCTCTAGAATTCCTTGAGAATGATCGACTCAATTCACGTTTTCCTTTTAAGATAAAATGATAATAGCCTCATATATCAGACATCCGTATAACCCTTTCTATTTACGCTGCATTAGAGAAAATTATGCAAGAATCTGGTTTTACTGAAGGACTGCATTGCCCTGGTACTTTCTTGGGCTTTATTCATTCTCTTCTTTTCTGCAATATAGTTATTATCAGATTAGAGAGATATATCCAGTGAAAAGGGAGCAAGGTCAGTAAAAATATTATCTAGAATGGCTTTGTGCATTTTTTGTGTGGTTGCAACATTGCCTAGAAATAGTATTAAAACATGTTTTTTCCCTTGCTGAAGACCACATATAAAAGGAATATTATCCCGACTTGATGAATTTGGATAAATTTGGACAATGCTTCATCATCCTAAGATAAGTGCAAGGAATTAGCAGTCTTATATCCTGTGATAGTACTACGAGAAGGAGACCAATATTTCTCCTGGCTTTAGTAGCGTGAATAGGTTGGCCATTGTGATACTTCGTCTGTGTTTCACATCCTTGTTGTCTTGTATAAATTATTTTACATTTTCTTTCAGCTGCTTATATCTTGCTTATGACACCCTTATGATTTTGGCACCCAAAGGTGACTTTGCAAGATTTTATAATGAATATTTAAAAACCTACTCTATATTTATAGTTCCCAATGAGATGCTATAGATAATTCACTTTAAATACCAAATCTAGGATAAAAGAGGTGAAGAAATAATGTCTTTCTAACTAATATTCTTTACATGATTCTACAGGCAAGTCTCCACGGAGGAAGGGGAAGCAAAGTCTCGTGAGCTAAACGTTATGTTTATTGAAGCTAGTGCCAAAGCCGGCTTCAATATAAAGGTACACCTCCCCTTTCTGTTGCCACACATATTTTACAAATATCAGCTTGAAATCATCATGATGAAACCTAAATTGCCTAGCATTGTCTTGGGTGAGATGTTTCAAATGGTTCATATGTGTGATAGTAGATTGTGTGCATTGCATTCATTTTCTAATGAGATATGTCTTGCAAAGTGCAATCAAAAGTTGGTTATTTATACATGCCAACTTATTACAATTTTCCACAAATTAGCTTCTTGTATGCAAGAGCAAGACATAAATATTTGCTAGCATTGTGATATATTTGCTTGTTTTACATACCTGGTCTTGGCATTTAATTTGAACTGATTTATCAAACCTATTACTTTAGGCCCTGTTCCGAAAAATTGCTGCTGCTTTGCCTGGAATGGAAACACTATCAACCACAAAACAAGAAGACATGGTCGATGTGAACCTGAGGTCTTCTACCAGCCATGACTCTCAACCTCAGTCTGGCGGATGTTCTTGCTAA
Protein sequence

>MS.gene46373.t1

ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRSERGSDVIVVLVGNKTDLVEKRQVSTEEGEAKSRELNVMFIEASAKAGFNIKALFRKIAAALPGMETLSTTKQEDMVDVNLRSSTSHDSQPQSGGCSC