Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46907.t1 | XP_003603496.1 | 99.4 | 323 | 2 | 0 | 1 | 323 | 1 | 323 | 1.90E-150 | 542 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46907.t1 | P50346 | 93.2 | 280 | 19 | 0 | 1 | 280 | 1 | 280 | 9.1e-141 | 501.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46907.t1 | G7JC94 | 99.4 | 323 | 2 | 0 | 1 | 323 | 1 | 323 | 1.4e-150 | 542.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene46907 | 0.854178 | 1.46E-61 | -1.69E-46 |
| MS.gene050134 | MS.gene46907 | 0.836826 | 7.45E-57 | -1.69E-46 |
| MS.gene050791 | MS.gene46907 | 0.849998 | 2.26E-60 | -1.69E-46 |
| MS.gene051984 | MS.gene46907 | 0.846788 | 1.74E-59 | -1.69E-46 |
| MS.gene052209 | MS.gene46907 | 0.818439 | 1.96E-52 | -1.69E-46 |
| MS.gene052664 | MS.gene46907 | 0.859003 | 5.59E-63 | -1.69E-46 |
| MS.gene053224 | MS.gene46907 | 0.816981 | 4.18E-52 | -1.69E-46 |
| MS.gene055232 | MS.gene46907 | 0.811192 | 7.92E-51 | -1.69E-46 |
| MS.gene057272 | MS.gene46907 | 0.804672 | 1.93E-49 | -1.69E-46 |
| MS.gene057643 | MS.gene46907 | 0.81852 | 1.88E-52 | -1.69E-46 |
| MS.gene060483 | MS.gene46907 | 0.830308 | 3.16E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46907.t1 | MTR_3g108280 | 99.381 | 323 | 2 | 0 | 1 | 323 | 1 | 323 | 0.0 | 642 |
| MS.gene46907.t1 | MTR_5g082180 | 91.331 | 323 | 28 | 0 | 1 | 323 | 1 | 323 | 0.0 | 556 |
| MS.gene46907.t1 | MTR_1g044130 | 98.765 | 81 | 1 | 0 | 243 | 323 | 1 | 81 | 1.03e-47 | 155 |
| MS.gene46907.t1 | MTR_7g022400 | 68.269 | 104 | 32 | 1 | 11 | 113 | 7 | 110 | 1.15e-41 | 143 |
| MS.gene46907.t1 | MTR_7g112750 | 67.089 | 79 | 25 | 1 | 11 | 88 | 7 | 85 | 8.95e-27 | 105 |
| MS.gene46907.t1 | MTR_3g074840 | 64.706 | 85 | 8 | 2 | 86 | 169 | 1 | 64 | 6.97e-22 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46907.t1 | AT2G40010 | 83.801 | 321 | 48 | 1 | 1 | 321 | 1 | 317 | 0.0 | 520 |
| MS.gene46907.t1 | AT3G09200 | 89.493 | 276 | 29 | 0 | 3 | 278 | 2 | 277 | 6.12e-180 | 500 |
| MS.gene46907.t1 | AT3G11250 | 88.406 | 276 | 32 | 0 | 3 | 278 | 2 | 277 | 4.78e-178 | 495 |
| MS.gene46907.t1 | AT3G09200 | 78.623 | 276 | 26 | 1 | 3 | 278 | 2 | 244 | 2.27e-149 | 421 |
| MS.gene46907.t1 | AT1G25260 | 22.685 | 216 | 146 | 4 | 10 | 214 | 16 | 221 | 4.03e-11 | 62.4 |
Find 100 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCCTTGGCAGCTGCAGC+AGG | 0.147360 | 3.1:-86399746 | None:intergenic |
| ATCTCAGACCTCTTTCTTCC+AGG | 0.252116 | 3.1:+86399114 | MS.gene46907:CDS |
| CAGCGTTGACAACAAGGATT+TGG | 0.257235 | 3.1:-86397657 | None:intergenic |
| GCCCCAGCTGCTGCTGCGTC+TGG | 0.268454 | 3.1:+86399716 | MS.gene46907:CDS |
| CATGGTCACTTCACTTTCAT+TGG | 0.278087 | 3.1:+86399446 | MS.gene46907:CDS |
| CACCAGACGCAGCAGCAGCT+GGG | 0.284716 | 3.1:-86399718 | None:intergenic |
| CCACCAGACGCAGCAGCAGC+TGG | 0.308640 | 3.1:-86399719 | None:intergenic |
| ATCGTAGTTCTGCTTCTTCT+CGG | 0.310851 | 3.1:-86397602 | None:intergenic |
| CACAGTACCCTTGTTAATCT+TGG | 0.311903 | 3.1:-86399220 | None:intergenic |
| TTGTAGCGAAGTTTGCTATT+GGG | 0.333941 | 3.1:+86399418 | MS.gene46907:CDS |
| TCTTCATCAGACTCTTCTTC+AGG | 0.361468 | 3.1:-86399785 | None:intergenic |
| GCTGCATTGCTTGCCAAGTT+AGG | 0.382522 | 3.1:+86399300 | MS.gene46907:CDS |
| TCCTTAACCTTGTCTGCCTC+AGG | 0.389206 | 3.1:-86399564 | None:intergenic |
| CTTGTAGCGAAGTTTGCTAT+TGG | 0.396386 | 3.1:+86399417 | MS.gene46907:CDS |
| GTTGAGAAAAGCATTGTTGC+CGG | 0.397292 | 3.1:-86397797 | None:intergenic |
| GTTCTGCTTCTTCTCGGCTT+TGG | 0.398033 | 3.1:-86397596 | None:intergenic |
| AGCTCCTGCTCGTGTTGGTT+TGG | 0.398892 | 3.1:+86399042 | MS.gene46907:CDS |
| CTCCTTGGCAGCTGCAGCAG+GGG | 0.398915 | 3.1:-86399744 | None:intergenic |
| TTCCTTCTTTGCCTCCTCCT+TGG | 0.403009 | 3.1:-86399759 | None:intergenic |
| AAAAGCAAGAACGTTCTTGT+AGG | 0.409408 | 3.1:-86399517 | None:intergenic |
| GGAGGAACAACGACATCAAT+TGG | 0.410263 | 3.1:-86399070 | None:intergenic |
| TGCCCCTGCTGCAGCTGCCA+AGG | 0.415195 | 3.1:+86399742 | MS.gene46907:CDS |
| TACCCTTGTTAATCTTGGTT+GGG | 0.415505 | 3.1:-86399215 | None:intergenic |
| CCTCCTTGGCAGCTGCAGCA+GGG | 0.416133 | 3.1:-86399745 | None:intergenic |
| ACAGCTACAGCAAACTTACT+TGG | 0.421114 | 3.1:-86399689 | None:intergenic |
| GACATTGGTTTCGGTCTGTT+TGG | 0.422303 | 3.1:+86399806 | MS.gene46907:CDS |
| TCTGATGAAGACATTGGTTT+CGG | 0.427250 | 3.1:+86399797 | MS.gene46907:CDS |
| CCAGCTGCTGCTGCGTCTGG+TGG | 0.429030 | 3.1:+86399719 | MS.gene46907:CDS |
| GGGTCGAGCCCTGTGTTGCC+TGG | 0.431244 | 3.1:-86399091 | None:intergenic |
| CCTTTCTTAATGAGTTCCAC+AGG | 0.432079 | 3.1:-86399255 | None:intergenic |
| TGGTGACTCCGTTGTTCTCA+TGG | 0.440885 | 3.1:+86397726 | MS.gene46907:CDS |
| TGCCTCAGGGAAATAATATT+CGG | 0.446178 | 3.1:-86399550 | None:intergenic |
| TCAGTGAGGTCAAGAACCTC+AGG | 0.450763 | 3.1:-86399387 | None:intergenic |
| GACCACAAGCCCGTATGAAA+AGG | 0.451799 | 3.1:-86399331 | None:intergenic |
| AGCGTTGACAACAAGGATTT+GGG | 0.451933 | 3.1:-86397656 | None:intergenic |
| AGAAAACTAACGACAAGAAG+AGG | 0.456056 | 3.1:-86397826 | None:intergenic |
| TGCTGCAGCTGCCAAGGAGG+AGG | 0.457641 | 3.1:+86399748 | MS.gene46907:CDS |
| CCCTGAGGCAGACAAGGTTA+AGG | 0.465890 | 3.1:+86399563 | MS.gene46907:CDS |
| TTTCACTAAAGGTGACTTGA+AGG | 0.469610 | 3.1:+86398687 | MS.gene46907:CDS |
| ATTGATGTCGTTGTTCCTCC+AGG | 0.473267 | 3.1:+86399073 | MS.gene46907:CDS |
| TCAGCTACAGAACATTCGTC+AGG | 0.474511 | 3.1:+86397696 | MS.gene46907:CDS |
| TGCCAAGGAGGAGGCAAAGA+AGG | 0.475094 | 3.1:+86399757 | MS.gene46907:CDS |
| GAGGAGCAGCGGCAAGTGTT+GGG | 0.477710 | 3.1:-86399479 | None:intergenic |
| TGTAGCGAAGTTTGCTATTG+GGG | 0.487853 | 3.1:+86399419 | MS.gene46907:CDS |
| TGAGGAGCAGCGGCAAGTGT+TGG | 0.489867 | 3.1:-86399480 | None:intergenic |
| ACCAGACGCAGCAGCAGCTG+GGG | 0.494428 | 3.1:-86399717 | None:intergenic |
| GTCCTCTCTGTTTATGACAA+TGG | 0.495884 | 3.1:+86399351 | MS.gene46907:CDS |
| GTTTGCTATTGGGGTTTCCA+TGG | 0.497232 | 3.1:+86399428 | MS.gene46907:CDS |
| TGCTTGCCAAGTTAGGCATT+AGG | 0.501788 | 3.1:+86399307 | MS.gene46907:CDS |
| GGGTGTATTCATCGATAAGC+TGG | 0.506884 | 3.1:-86397636 | None:intergenic |
| GTACCCTTGTTAATCTTGGT+TGG | 0.507788 | 3.1:-86399216 | None:intergenic |
| GCAACCAAACCAACACGAGC+AGG | 0.521300 | 3.1:-86399046 | None:intergenic |
| CGTATGCACGCTGAGAAAAC+CGG | 0.521724 | 3.1:+86397778 | MS.gene46907:CDS |
| AAAGGGCCTAATGCCTAACT+TGG | 0.523198 | 3.1:-86399313 | None:intergenic |
| CCCTGCTGCAGCTGCCAAGG+AGG | 0.530721 | 3.1:+86399745 | MS.gene46907:CDS |
| TGCTTCTTCTCGGCTTTGGT+AGG | 0.531501 | 3.1:-86397592 | None:intergenic |
| ACCACAAGCCCGTATGAAAA+GGG | 0.531757 | 3.1:-86399330 | None:intergenic |
| GTTGGAGCTCCTGCTCGTGT+TGG | 0.532062 | 3.1:+86399037 | MS.gene46907:CDS |
| TAGGCATTGACGAACATATG+AGG | 0.532355 | 3.1:-86399498 | None:intergenic |
| CAATAGCAAACTTCGCTACA+AGG | 0.533756 | 3.1:-86399416 | None:intergenic |
| TGGAAGAAAGAGGTCTGAGA+TGG | 0.537477 | 3.1:-86399112 | None:intergenic |
| GTGCTGAATCAGGGAAATGT+TGG | 0.555601 | 3.1:+86398658 | MS.gene46907:intron |
| TAACGACAAGAAGAGGGATA+AGG | 0.557262 | 3.1:-86397819 | None:intergenic |
| ATTAAGAAAGGAGACAAGGT+TGG | 0.560082 | 3.1:+86399267 | MS.gene46907:CDS |
| CCTGTGGAACTCATTAAGAA+AGG | 0.562398 | 3.1:+86399255 | MS.gene46907:CDS |
| GTTGTTCCTCCAGGCAACAC+AGG | 0.564540 | 3.1:+86399082 | MS.gene46907:CDS |
| CATCCCAACCAAGATTAACA+AGG | 0.566179 | 3.1:+86399212 | MS.gene46907:CDS |
| GAAGAGTCTGATGAAGACAT+TGG | 0.571608 | 3.1:+86399791 | MS.gene46907:CDS |
| CTTTCTTAATGAGTTCCACA+GGG | 0.574196 | 3.1:-86399254 | None:intergenic |
| CGTTGTCAGCGTTGACAACA+AGG | 0.575399 | 3.1:-86397663 | None:intergenic |
| ATAACAAACCTGGAAGAAAG+AGG | 0.579894 | 3.1:-86399122 | None:intergenic |
| GGTGACTCCGTTGTTCTCAT+GGG | 0.580224 | 3.1:+86397727 | MS.gene46907:CDS |
| ACGAACAGATCGCTTCATCA+TGG | 0.583200 | 3.1:-86397758 | None:intergenic |
| CCTTAACCTTGTCTGCCTCA+GGG | 0.589860 | 3.1:-86399563 | None:intergenic |
| GGAAGAAAGAGGTCTGAGAT+GGG | 0.590223 | 3.1:-86399111 | None:intergenic |
| CAGCTACAGCAAACTTACTT+GGG | 0.593694 | 3.1:-86399688 | None:intergenic |
| TTATTTCCCTGAGGCAGACA+AGG | 0.600567 | 3.1:+86399557 | MS.gene46907:CDS |
| GGCAAGTGTTGGGTAAGAGA+TGG | 0.602128 | 3.1:-86399469 | None:intergenic |
| GAAAACTAACGACAAGAAGA+GGG | 0.606607 | 3.1:-86397825 | None:intergenic |
| TTGTTCCTCCAGGCAACACA+GGG | 0.611479 | 3.1:+86399083 | MS.gene46907:CDS |
| CAAGATTAACAAGGGTACTG+TGG | 0.615021 | 3.1:+86399221 | MS.gene46907:CDS |
| TGAAGAAGTTGCTAAATACA+AGG | 0.626443 | 3.1:+86398717 | MS.gene46907:CDS |
| GACGAACATATGAGGAGCAG+CGG | 0.628131 | 3.1:-86399490 | None:intergenic |
| CAGCTACAGAACATTCGTCA+GGG | 0.630095 | 3.1:+86397697 | MS.gene46907:CDS |
| GTTGTCAACGCTGACAACGT+TGG | 0.630374 | 3.1:+86397667 | MS.gene46907:CDS |
| TGGTTCAGTGTTTAGCCCTG+AGG | 0.633517 | 3.1:+86399371 | MS.gene46907:CDS |
| CAATGAAAGTGAAGTGACCA+TGG | 0.657879 | 3.1:-86399445 | None:intergenic |
| CAAGGTTAAGGAGTACCTGA+AGG | 0.661074 | 3.1:+86399575 | MS.gene46907:CDS |
| GTTCTTTCCCATGAGAACAA+CGG | 0.664224 | 3.1:-86397734 | None:intergenic |
| ATCCCAACCAAGATTAACAA+GGG | 0.664581 | 3.1:+86399213 | MS.gene46907:CDS |
| AACATTCGTCAGGGTCTACG+TGG | 0.667957 | 3.1:+86397706 | MS.gene46907:CDS |
| TGTGGAAATTATTACCCCTG+TGG | 0.672323 | 3.1:+86399239 | MS.gene46907:CDS |
| ACTCATTAAGAAAGGAGACA+AGG | 0.674494 | 3.1:+86399263 | MS.gene46907:CDS |
| TCGAGCCCTGTGTTGCCTGG+AGG | 0.687408 | 3.1:-86399088 | None:intergenic |
| CAGTGAGGTCAAGAACCTCA+GGG | 0.701495 | 3.1:-86399386 | None:intergenic |
| TGAGGTTCTTGACCTCACTG+AGG | 0.710337 | 3.1:+86399389 | MS.gene46907:CDS |
| AACCATTGTCATAAACAGAG+AGG | 0.717707 | 3.1:-86399353 | None:intergenic |
| TACCGAATATTATTTCCCTG+AGG | 0.725295 | 3.1:+86399548 | MS.gene46907:CDS |
| TTTCTTAATGAGTTCCACAG+GGG | 0.725748 | 3.1:-86399253 | None:intergenic |
| CTACAAGGTCATCCTCAGTG+AGG | 0.743500 | 3.1:-86399401 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAAAGAATAAGAAAAA+TGG | - | chr3.1:86399653-86399672 | None:intergenic | 15.0% |
| !! | AAGCTTATAAATAATACATA+GGG | + | chr3.1:86398195-86398214 | MS.gene46907:intron | 15.0% |
| !! | AATCAAAGAATAAGAAAAAT+GGG | - | chr3.1:86399652-86399671 | None:intergenic | 15.0% |
| !! | TAAGCTTATAAATAATACAT+AGG | + | chr3.1:86398194-86398213 | MS.gene46907:intron | 15.0% |
| !! | TATTATTTATAAGCTTATCA+AGG | - | chr3.1:86398191-86398210 | None:intergenic | 15.0% |
| !!! | AGTCTAACTTTATTTATAAT+GGG | + | chr3.1:86398046-86398065 | MS.gene46907:intron | 15.0% |
| !! | TAATTGTCTTAAATCTGAAT+AGG | + | chr3.1:86399015-86399034 | MS.gene46907:intron | 20.0% |
| !! | TATGCAAATAAATAAGCTTA+TGG | - | chr3.1:86398424-86398443 | None:intergenic | 20.0% |
| !!! | CAGTCTAACTTTATTTATAA+TGG | + | chr3.1:86398045-86398064 | MS.gene46907:intron | 20.0% |
| !!! | GTCTAACTTTATTTATAATG+GGG | + | chr3.1:86398047-86398066 | MS.gene46907:intron | 20.0% |
| ! | AATTACTGCACTATATTATG+AGG | + | chr3.1:86398599-86398618 | MS.gene46907:intron | 25.0% |
| ! | ATATGTTATGTTGTTAAGCA+TGG | + | chr3.1:86398764-86398783 | MS.gene46907:intron | 25.0% |
| ! | ATTTACAGAAATTGTAACGA+GGG | - | chr3.1:86398909-86398928 | None:intergenic | 25.0% |
| ! | CTTTATGTTAATTCACAAGT+GGG | + | chr3.1:86398124-86398143 | MS.gene46907:intron | 25.0% |
| ! | TAGTGAGAACTTATGAATTA+AGG | + | chr3.1:86398333-86398352 | MS.gene46907:intron | 25.0% |
| ! | TATTTACAGAAATTGTAACG+AGG | - | chr3.1:86398910-86398929 | None:intergenic | 25.0% |
| ! | TCTTTATGTTAATTCACAAG+TGG | + | chr3.1:86398123-86398142 | MS.gene46907:intron | 25.0% |
| ! | TTAAAAGAAGATAACAAACC+TGG | - | chr3.1:86399135-86399154 | None:intergenic | 25.0% |
| ! | TTATGTTTATTCTCCACTTT+AGG | + | chr3.1:86399182-86399201 | MS.gene46907:intron | 25.0% |
| !! | TTTAGTGATTTTGTGTGATT+TGG | + | chr3.1:86397901-86397920 | MS.gene46907:intron | 25.0% |
| !!! | TTCTGTTTTTTGTTACGTAT+AGG | + | chr3.1:86397937-86397956 | MS.gene46907:intron | 25.0% |
| AAAATAAGCTCAATCCAAAC+GGG | + | chr3.1:86398397-86398416 | MS.gene46907:intron | 30.0% | |
| AATAATACATAGGGTCTGTT+TGG | + | chr3.1:86398204-86398223 | MS.gene46907:intron | 30.0% | |
| CAAAATAAGCTCAATCCAAA+CGG | + | chr3.1:86398396-86398415 | MS.gene46907:intron | 30.0% | |
| TGAAGAAGTTGCTAAATACA+AGG | + | chr3.1:86398717-86398736 | MS.gene46907:CDS | 30.0% | |
| TGTCTTAAATCTGAATAGGT+TGG | + | chr3.1:86399019-86399038 | MS.gene46907:intron | 30.0% | |
| TTCGCTGTTCGATTTAATAA+TGG | + | chr3.1:86397868-86397887 | MS.gene46907:intron | 30.0% | |
| TTTAGCTGTCTATACAAACA+AGG | + | chr3.1:86398528-86398547 | MS.gene46907:intron | 30.0% | |
| ! | AATACTTTTCGTTTGATGCA+TGG | + | chr3.1:86398929-86398948 | MS.gene46907:intron | 30.0% |
| ! | TATTGTTGTTAACTCTTGTG+AGG | + | chr3.1:86398631-86398650 | MS.gene46907:intron | 30.0% |
| !!! | GTTGGTTTGATTTTCACTAA+AGG | + | chr3.1:86398676-86398695 | MS.gene46907:CDS | 30.0% |
| AAAAGCAAGAACGTTCTTGT+AGG | - | chr3.1:86399520-86399539 | None:intergenic | 35.0% | |
| AAATAAGCTCAATCCAAACG+GGG | + | chr3.1:86398398-86398417 | MS.gene46907:intron | 35.0% | |
| AACCATTGTCATAAACAGAG+AGG | - | chr3.1:86399356-86399375 | None:intergenic | 35.0% | |
| ACTCATTAAGAAAGGAGACA+AGG | + | chr3.1:86399263-86399282 | MS.gene46907:CDS | 35.0% | |
| AGAAAACTAACGACAAGAAG+AGG | - | chr3.1:86397829-86397848 | None:intergenic | 35.0% | |
| ATAACAAACCTGGAAGAAAG+AGG | - | chr3.1:86399125-86399144 | None:intergenic | 35.0% | |
| ATCCCAACCAAGATTAACAA+GGG | + | chr3.1:86399213-86399232 | MS.gene46907:CDS | 35.0% | |
| ATGTTGAAGTCAATACCTTC+AGG | - | chr3.1:86399593-86399612 | None:intergenic | 35.0% | |
| ATTAAGAAAGGAGACAAGGT+TGG | + | chr3.1:86399267-86399286 | MS.gene46907:CDS | 35.0% | |
| CATTCAACAAACAAGACAAG+TGG | - | chr3.1:86398982-86399001 | None:intergenic | 35.0% | |
| CTTTCTTAATGAGTTCCACA+GGG | - | chr3.1:86399257-86399276 | None:intergenic | 35.0% | |
| GAAAACTAACGACAAGAAGA+GGG | - | chr3.1:86397828-86397847 | None:intergenic | 35.0% | |
| TACCCTTGTTAATCTTGGTT+GGG | - | chr3.1:86399218-86399237 | None:intergenic | 35.0% | |
| TACCGAATATTATTTCCCTG+AGG | + | chr3.1:86399548-86399567 | MS.gene46907:CDS | 35.0% | |
| TGCCTCAGGGAAATAATATT+CGG | - | chr3.1:86399553-86399572 | None:intergenic | 35.0% | |
| TTTCACTAAAGGTGACTTGA+AGG | + | chr3.1:86398687-86398706 | MS.gene46907:CDS | 35.0% | |
| TTTCTTAATGAGTTCCACAG+GGG | - | chr3.1:86399256-86399275 | None:intergenic | 35.0% | |
| !! | CTTTGATTTTTGTTCACTGC+AGG | + | chr3.1:86399664-86399683 | MS.gene46907:intron | 35.0% |
| !! | TCTGATGAAGACATTGGTTT+CGG | + | chr3.1:86399797-86399816 | MS.gene46907:CDS | 35.0% |
| !! | TTGTAGCGAAGTTTGCTATT+GGG | + | chr3.1:86399418-86399437 | MS.gene46907:CDS | 35.0% |
| ACAGCTACAGCAAACTTACT+TGG | - | chr3.1:86399692-86399711 | None:intergenic | 40.0% | |
| CAATAGCAAACTTCGCTACA+AGG | - | chr3.1:86399419-86399438 | None:intergenic | 40.0% | |
| CAATGAAAGTGAAGTGACCA+TGG | - | chr3.1:86399448-86399467 | None:intergenic | 40.0% | |
| CACAGTACCCTTGTTAATCT+TGG | - | chr3.1:86399223-86399242 | None:intergenic | 40.0% | |
| CAGCTACAGCAAACTTACTT+GGG | - | chr3.1:86399691-86399710 | None:intergenic | 40.0% | |
| CATCCCAACCAAGATTAACA+AGG | + | chr3.1:86399212-86399231 | MS.gene46907:CDS | 40.0% | |
| CATGGTCACTTCACTTTCAT+TGG | + | chr3.1:86399446-86399465 | MS.gene46907:CDS | 40.0% | |
| CCTGTGGAACTCATTAAGAA+AGG | + | chr3.1:86399255-86399274 | MS.gene46907:CDS | 40.0% | |
| CCTTTCTTAATGAGTTCCAC+AGG | - | chr3.1:86399258-86399277 | None:intergenic | 40.0% | |
| GAAGAGTCTGATGAAGACAT+TGG | + | chr3.1:86399791-86399810 | MS.gene46907:CDS | 40.0% | |
| GTACCCTTGTTAATCTTGGT+TGG | - | chr3.1:86399219-86399238 | None:intergenic | 40.0% | |
| GTCCTCTCTGTTTATGACAA+TGG | + | chr3.1:86399351-86399370 | MS.gene46907:CDS | 40.0% | |
| GTTCTTTCCCATGAGAACAA+CGG | - | chr3.1:86397737-86397756 | None:intergenic | 40.0% | |
| TAACGACAAGAAGAGGGATA+AGG | - | chr3.1:86397822-86397841 | None:intergenic | 40.0% | |
| TCTTCATCAGACTCTTCTTC+AGG | - | chr3.1:86399788-86399807 | None:intergenic | 40.0% | |
| TGAGGATTTGTGCTGAATCA+GGG | + | chr3.1:86398649-86398668 | MS.gene46907:intron | 40.0% | |
| TGTGGAAATTATTACCCCTG+TGG | + | chr3.1:86399239-86399258 | MS.gene46907:CDS | 40.0% | |
| ! | ATAATGGGGCGTGTTTGAAT+TGG | + | chr3.1:86398061-86398080 | MS.gene46907:intron | 40.0% |
| ! | ATCGTAGTTCTGCTTCTTCT+CGG | - | chr3.1:86397605-86397624 | None:intergenic | 40.0% |
| ! | CACTAGAGGTGCAACAAAAA+TGG | - | chr3.1:86398836-86398855 | None:intergenic | 40.0% |
| ! | TTTTTGTTGCACCTCTAGTG+AGG | + | chr3.1:86398836-86398855 | MS.gene46907:intron | 40.0% |
| !! | AGCGTTGACAACAAGGATTT+GGG | - | chr3.1:86397659-86397678 | None:intergenic | 40.0% |
| !! | CAAGATTAACAAGGGTACTG+TGG | + | chr3.1:86399221-86399240 | MS.gene46907:CDS | 40.0% |
| !! | CTTGTAGCGAAGTTTGCTAT+TGG | + | chr3.1:86399417-86399436 | MS.gene46907:CDS | 40.0% |
| !! | GTTGAGAAAAGCATTGTTGC+CGG | - | chr3.1:86397800-86397819 | None:intergenic | 40.0% |
| !! | TAGGCATTGACGAACATATG+AGG | - | chr3.1:86399501-86399520 | None:intergenic | 40.0% |
| !! | TGTAGCGAAGTTTGCTATTG+GGG | + | chr3.1:86399419-86399438 | MS.gene46907:CDS | 40.0% |
| AAAGGGCCTAATGCCTAACT+TGG | - | chr3.1:86399316-86399335 | None:intergenic | 45.0% | |
| AATAAGCTTATGGCCCCGTT+TGG | - | chr3.1:86398414-86398433 | None:intergenic | 45.0% | |
| ACCACAAGCCCGTATGAAAA+GGG | - | chr3.1:86399333-86399352 | None:intergenic | 45.0% | |
| ACGAACAGATCGCTTCATCA+TGG | - | chr3.1:86397761-86397780 | None:intergenic | 45.0% | |
| ATCTCAGACCTCTTTCTTCC+AGG | + | chr3.1:86399114-86399133 | MS.gene46907:CDS | 45.0% | |
| ATTGATGTCGTTGTTCCTCC+AGG | + | chr3.1:86399073-86399092 | MS.gene46907:CDS | 45.0% | |
| CAGCTACAGAACATTCGTCA+GGG | + | chr3.1:86397697-86397716 | MS.gene46907:CDS | 45.0% | |
| GGAGGAACAACGACATCAAT+TGG | - | chr3.1:86399073-86399092 | None:intergenic | 45.0% | |
| GGGTGTATTCATCGATAAGC+TGG | - | chr3.1:86397639-86397658 | None:intergenic | 45.0% | |
| GTGAGGATTTGTGCTGAATC+AGG | + | chr3.1:86398648-86398667 | MS.gene46907:intron | 45.0% | |
| GTGCTGAATCAGGGAAATGT+TGG | + | chr3.1:86398658-86398677 | MS.gene46907:intron | 45.0% | |
| TCAGCTACAGAACATTCGTC+AGG | + | chr3.1:86397696-86397715 | MS.gene46907:CDS | 45.0% | |
| TGCTTGCCAAGTTAGGCATT+AGG | + | chr3.1:86399307-86399326 | MS.gene46907:CDS | 45.0% | |
| TGGAAGAAAGAGGTCTGAGA+TGG | - | chr3.1:86399115-86399134 | None:intergenic | 45.0% | |
| TTATTTCCCTGAGGCAGACA+AGG | + | chr3.1:86399557-86399576 | MS.gene46907:CDS | 45.0% | |
| ! | GCATTAGGCCCTTTTCATAC+GGG | + | chr3.1:86399322-86399341 | MS.gene46907:CDS | 45.0% |
| ! | GGAAGAAAGAGGTCTGAGAT+GGG | - | chr3.1:86399114-86399133 | None:intergenic | 45.0% |
| ! | GGCATTAGGCCCTTTTCATA+CGG | + | chr3.1:86399321-86399340 | MS.gene46907:CDS | 45.0% |
| !! | CAAGGTTAAGGAGTACCTGA+AGG | + | chr3.1:86399575-86399594 | MS.gene46907:CDS | 45.0% |
| !! | CAGCGTTGACAACAAGGATT+TGG | - | chr3.1:86397660-86397679 | None:intergenic | 45.0% |
| !! | GACATTGGTTTCGGTCTGTT+TGG | + | chr3.1:86399806-86399825 | MS.gene46907:CDS | 45.0% |
| !! | GTTTGCTATTGGGGTTTCCA+TGG | + | chr3.1:86399428-86399447 | MS.gene46907:CDS | 45.0% |
| !! | AACTTATAAATAATAAATAA+AGG | - | chr3.1:86398265-86398284 | None:intergenic | 5.0% |
| AACATTCGTCAGGGTCTACG+TGG | + | chr3.1:86397706-86397725 | MS.gene46907:CDS | 50.0% | |
| CAACCACAGTACCTCACTAG+AGG | - | chr3.1:86398850-86398869 | None:intergenic | 50.0% | |
| CAGTGAGGTCAAGAACCTCA+GGG | - | chr3.1:86399389-86399408 | None:intergenic | 50.0% | |
| CCTTAACCTTGTCTGCCTCA+GGG | - | chr3.1:86399566-86399585 | None:intergenic | 50.0% | |
| CGTATGCACGCTGAGAAAAC+CGG | + | chr3.1:86397778-86397797 | MS.gene46907:CDS | 50.0% | |
| CTACAAGGTCATCCTCAGTG+AGG | - | chr3.1:86399404-86399423 | None:intergenic | 50.0% | |
| GACCACAAGCCCGTATGAAA+AGG | - | chr3.1:86399334-86399353 | None:intergenic | 50.0% | |
| GACGAACATATGAGGAGCAG+CGG | - | chr3.1:86399493-86399512 | None:intergenic | 50.0% | |
| GCATGGCAATTGCAGCAATG+TGG | + | chr3.1:86398946-86398965 | MS.gene46907:intron | 50.0% | |
| GCTGCATTGCTTGCCAAGTT+AGG | + | chr3.1:86399300-86399319 | MS.gene46907:CDS | 50.0% | |
| GGGATGTTGAGCACCTAAAG+TGG | - | chr3.1:86399198-86399217 | None:intergenic | 50.0% | |
| GGTGACTCCGTTGTTCTCAT+GGG | + | chr3.1:86397727-86397746 | MS.gene46907:CDS | 50.0% | |
| GTTCTGCTTCTTCTCGGCTT+TGG | - | chr3.1:86397599-86397618 | None:intergenic | 50.0% | |
| GTTGTCAACGCTGACAACGT+TGG | + | chr3.1:86397667-86397686 | MS.gene46907:CDS | 50.0% | |
| TCAGTGAGGTCAAGAACCTC+AGG | - | chr3.1:86399390-86399409 | None:intergenic | 50.0% | |
| TCCTTAACCTTGTCTGCCTC+AGG | - | chr3.1:86399567-86399586 | None:intergenic | 50.0% | |
| TGAGGTTCTTGACCTCACTG+AGG | + | chr3.1:86399389-86399408 | MS.gene46907:CDS | 50.0% | |
| TGGTGACTCCGTTGTTCTCA+TGG | + | chr3.1:86397726-86397745 | MS.gene46907:CDS | 50.0% | |
| TGGTTCAGTGTTTAGCCCTG+AGG | + | chr3.1:86399371-86399390 | MS.gene46907:CDS | 50.0% | |
| TTCCTTCTTTGCCTCCTCCT+TGG | - | chr3.1:86399762-86399781 | None:intergenic | 50.0% | |
| TTGTTCCTCCAGGCAACACA+GGG | + | chr3.1:86399083-86399102 | MS.gene46907:CDS | 50.0% | |
| ! | TGCTTCTTCTCGGCTTTGGT+AGG | - | chr3.1:86397595-86397614 | None:intergenic | 50.0% |
| !! | CGTTGTCAGCGTTGACAACA+AGG | - | chr3.1:86397666-86397685 | None:intergenic | 50.0% |
| !! | GGCAAGTGTTGGGTAAGAGA+TGG | - | chr3.1:86399472-86399491 | None:intergenic | 50.0% |
| CCCTGAGGCAGACAAGGTTA+AGG | + | chr3.1:86399563-86399582 | MS.gene46907:CDS | 55.0% | |
| CTGCGTACGGGCGTTAGAAT+TGG | - | chr3.1:86398475-86398494 | None:intergenic | 55.0% | |
| GCAACCAAACCAACACGAGC+AGG | - | chr3.1:86399049-86399068 | None:intergenic | 55.0% | |
| GTTGTTCCTCCAGGCAACAC+AGG | + | chr3.1:86399082-86399101 | MS.gene46907:CDS | 55.0% | |
| TGCCAAGGAGGAGGCAAAGA+AGG | + | chr3.1:86399757-86399776 | MS.gene46907:CDS | 55.0% | |
| ! | GCCCTTTTCATACGGGCTTG+TGG | + | chr3.1:86399329-86399348 | MS.gene46907:CDS | 55.0% |
| !! | AGCTCCTGCTCGTGTTGGTT+TGG | + | chr3.1:86399042-86399061 | MS.gene46907:CDS | 55.0% |
| !! | GCACCTCTAGTGAGGTACTG+TGG | + | chr3.1:86398844-86398863 | MS.gene46907:intron | 55.0% |
| AAGCGCGTGCTCACTGCGTA+CGG | - | chr3.1:86398488-86398507 | None:intergenic | 60.0% | |
| GAGGAGCAGCGGCAAGTGTT+GGG | - | chr3.1:86399482-86399501 | None:intergenic | 60.0% | |
| GTTGGAGCTCCTGCTCGTGT+TGG | + | chr3.1:86399037-86399056 | MS.gene46907:CDS | 60.0% | |
| TGAGGAGCAGCGGCAAGTGT+TGG | - | chr3.1:86399483-86399502 | None:intergenic | 60.0% | |
| ACCAGACGCAGCAGCAGCTG+GGG | - | chr3.1:86399720-86399739 | None:intergenic | 65.0% | |
| AGCGCGTGCTCACTGCGTAC+GGG | - | chr3.1:86398487-86398506 | None:intergenic | 65.0% | |
| CACCAGACGCAGCAGCAGCT+GGG | - | chr3.1:86399721-86399740 | None:intergenic | 65.0% | |
| CCTCCTTGGCAGCTGCAGCA+GGG | - | chr3.1:86399748-86399767 | None:intergenic | 65.0% | |
| CTCCTTGGCAGCTGCAGCAG+GGG | - | chr3.1:86399747-86399766 | None:intergenic | 65.0% | |
| TCCTCCTTGGCAGCTGCAGC+AGG | - | chr3.1:86399749-86399768 | None:intergenic | 65.0% | |
| TCGAGCCCTGTGTTGCCTGG+AGG | - | chr3.1:86399091-86399110 | None:intergenic | 65.0% | |
| TGCTGCAGCTGCCAAGGAGG+AGG | + | chr3.1:86399748-86399767 | MS.gene46907:CDS | 65.0% | |
| CCACCAGACGCAGCAGCAGC+TGG | - | chr3.1:86399722-86399741 | None:intergenic | 70.0% | |
| CCAGCTGCTGCTGCGTCTGG+TGG | + | chr3.1:86399719-86399738 | MS.gene46907:CDS | 70.0% | |
| CCCTGCTGCAGCTGCCAAGG+AGG | + | chr3.1:86399745-86399764 | MS.gene46907:CDS | 70.0% | |
| GGGTCGAGCCCTGTGTTGCC+TGG | - | chr3.1:86399094-86399113 | None:intergenic | 70.0% | |
| TGCCCCTGCTGCAGCTGCCA+AGG | + | chr3.1:86399742-86399761 | MS.gene46907:CDS | 70.0% | |
| GCCCCAGCTGCTGCTGCGTC+TGG | + | chr3.1:86399716-86399735 | MS.gene46907:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 86397580 | 86399838 | 86397580 | ID=MS.gene46907 |
| chr3.1 | mRNA | 86397580 | 86399838 | 86397580 | ID=MS.gene46907.t1;Parent=MS.gene46907 |
| chr3.1 | exon | 86397580 | 86397837 | 86397580 | ID=MS.gene46907.t1.exon1;Parent=MS.gene46907.t1 |
| chr3.1 | CDS | 86397580 | 86397837 | 86397580 | ID=cds.MS.gene46907.t1;Parent=MS.gene46907.t1 |
| chr3.1 | exon | 86398670 | 86398738 | 86398670 | ID=MS.gene46907.t1.exon2;Parent=MS.gene46907.t1 |
| chr3.1 | CDS | 86398670 | 86398738 | 86398670 | ID=cds.MS.gene46907.t1;Parent=MS.gene46907.t1 |
| chr3.1 | exon | 86399037 | 86399135 | 86399037 | ID=MS.gene46907.t1.exon3;Parent=MS.gene46907.t1 |
| chr3.1 | CDS | 86399037 | 86399135 | 86399037 | ID=cds.MS.gene46907.t1;Parent=MS.gene46907.t1 |
| chr3.1 | exon | 86399204 | 86399596 | 86399204 | ID=MS.gene46907.t1.exon4;Parent=MS.gene46907.t1 |
| chr3.1 | CDS | 86399204 | 86399596 | 86399204 | ID=cds.MS.gene46907.t1;Parent=MS.gene46907.t1 |
| chr3.1 | exon | 86399686 | 86399838 | 86399686 | ID=MS.gene46907.t1.exon5;Parent=MS.gene46907.t1 |
| chr3.1 | CDS | 86399686 | 86399838 | 86399686 | ID=cds.MS.gene46907.t1;Parent=MS.gene46907.t1 |
| Gene Sequence |
| Protein sequence |
