AlfalfaGEDB | MS.gene47366

M. sativa cultivar XinJiangDaYe / MS.gene47366

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF12799.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47366.t1	XP_003590391.1	96.7	676	22	0	2	677	1	676	0.00E+00	1085.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47366.t1	Q9SJQ1	61.5	680	226	12	12	673	10	671	1.2e-190	667.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47366.t1	Q1SN29	96.7	676	22	0	2	677	1	676	0.0e+00	1085.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049418	MS.gene47366	0.83423	3.38E-56	-1.69E-46
MS.gene049622	MS.gene47366	0.812891	3.37E-51	-1.69E-46
MS.gene049660	MS.gene47366	0.81518	1.05E-51	-1.69E-46
MS.gene04985	MS.gene47366	0.8052	1.50E-49	-1.69E-46
MS.gene049989	MS.gene47366	0.856113	4.01E-62	-1.69E-46
MS.gene050297	MS.gene47366	0.818561	1.84E-52	-1.69E-46
MS.gene05054	MS.gene47366	0.818124	2.31E-52	-1.69E-46
MS.gene051478	MS.gene47366	0.800324	1.52E-48	-1.69E-46
MS.gene052367	MS.gene47366	0.820493	6.66E-53	-1.69E-46
MS.gene052383	MS.gene47366	0.818711	1.70E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene057724	MS.gene47366	PPI
MS.gene47366	MS.gene003506	PPI
MS.gene52091	MS.gene47366	PPI
MS.gene90962	MS.gene47366	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47366.t1	MTR_1g061590	98.373	676	11	0	2	677	1	676	0.0	1371
MS.gene47366.t1	MTR_7g103440	71.429	665	176	7	24	677	28	689	0.0	913
MS.gene47366.t1	MTR_1g110280	46.086	677	318	17	16	677	20	664	1.77e-178	523
MS.gene47366.t1	MTR_5g055470	42.519	675	326	17	4	669	11	632	3.33e-165	488
MS.gene47366.t1	MTR_3g093710	42.857	630	311	17	24	648	30	615	4.56e-155	462
MS.gene47366.t1	MTR_3g090660	40.119	673	335	19	7	672	5	616	8.42e-150	448
MS.gene47366.t1	MTR_3g062500	42.000	650	329	18	10	652	23	631	2.55e-146	440
MS.gene47366.t1	MTR_3g062500	42.000	650	329	18	10	652	33	641	4.46e-146	440
MS.gene47366.t1	MTR_8g099195	39.385	650	331	17	6	648	3	596	6.10e-144	434
MS.gene47366.t1	MTR_4g113100	42.500	640	298	16	26	647	30	617	3.75e-143	432

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47366.t1	AT2G36570	66.866	670	186	12	22	673	20	671	0.0	874
MS.gene47366.t1	AT1G68400	46.636	654	291	18	26	657	31	648	7.35e-166	491
MS.gene47366.t1	AT2G26730	43.009	658	321	16	2	647	4	619	1.23e-155	465
MS.gene47366.t1	AT3G08680	42.770	657	324	19	2	648	1	615	4.93e-154	460
MS.gene47366.t1	AT3G08680	42.770	657	324	19	2	648	1	615	4.93e-154	460
MS.gene47366.t1	AT5G58300	41.940	670	324	24	11	664	30	650	1.14e-147	444
MS.gene47366.t1	AT5G58300	41.940	670	324	24	11	664	30	650	1.14e-147	444
MS.gene47366.t1	AT5G58300	41.940	670	324	24	11	664	30	650	1.14e-147	444
MS.gene47366.t1	AT1G48480	42.400	625	302	21	47	648	54	643	1.46e-141	428
MS.gene47366.t1	AT5G05160	40.930	667	315	25	4	648	8	617	9.46e-140	423

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Find 218 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGCGTCGATGGGTCCT+CGG	0.538310	1.1:-46762628	None:intergenic
AACAAGAATAAGCTTGGTAT+TGG	0.372374	1.1:+46764637	MS.gene47366:CDS
AACACAATGCTTAACAAATT+CGG	0.384019	1.1:+46763004	MS.gene47366:CDS
AACAGTATATGGATGTGATT+GGG	0.512935	1.1:+46763611	MS.gene47366:CDS
AAGAAGGTGTATAATTCAAA+TGG	0.469813	1.1:+46763364	MS.gene47366:CDS
AAGACGGAGGAGGTTGTTTA+GGG	0.357548	1.1:-46762801	None:intergenic
AAGAGCATGCAAGCTCCCAT+TGG	0.556251	1.1:-46763716	None:intergenic
AAGATGCAAATCCTTGTGCT+AGG	0.565333	1.1:+46763578	MS.gene47366:CDS
AAGGGGAGAAAGAGCGTCGA+TGG	0.478221	1.1:-46762636	None:intergenic
AAGGTGTATAATTCAAATGG+TGG	0.528739	1.1:+46763367	MS.gene47366:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAGAATAAGCTTGGTAT+TGG	+	chr1.1:46764637-46764656	MS.gene47366:CDS	30.0%
AACAGTATATGGATGTGATT+GGG	+	chr1.1:46763611-46763630	MS.gene47366:CDS	30.0%
AAGGTGTATAATTCAAATGG+TGG	+	chr1.1:46763367-46763386	MS.gene47366:CDS	30.0%
AATGTACTACTTGACAAGAA+CGG	+	chr1.1:46764737-46764756	MS.gene47366:CDS	30.0%
AATTTGTGTTGCATTGTTAG+TGG	+	chr1.1:46763237-46763256	MS.gene47366:CDS	30.0%
ACAAGAATAAGCTTGGTATT+GGG	+	chr1.1:46764638-46764657	MS.gene47366:CDS	30.0%
ACTAACAAAGTCTACATTCA+GGG	-	chr1.1:46764417-46764436	None:intergenic	30.0%
AGGTGTATAATTCAAATGGT+GGG	+	chr1.1:46763368-46763387	MS.gene47366:CDS	30.0%
GTTAATAGTAATTCCTTAGC+GGG	+	chr1.1:46763304-46763323	MS.gene47366:CDS	30.0%
TAACTAACCTTCTCACATTA+AGG	+	chr1.1:46762876-46762895	MS.gene47366:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	46762395	46765282	46762395	ID=MS.gene47366
chr1.1	mRNA	46762395	46765282	46762395	ID=MS.gene47366.t1;Parent=MS.gene47366
chr1.1	exon	46762395	46763745	46762395	ID=MS.gene47366.t1.exon1;Parent=MS.gene47366.t1
chr1.1	CDS	46762395	46763745	46762395	ID=cds.MS.gene47366.t1;Parent=MS.gene47366.t1
chr1.1	exon	46764600	46765282	46764600	ID=MS.gene47366.t1.exon2;Parent=MS.gene47366.t1
chr1.1	CDS	46764600	46765282	46764600	ID=cds.MS.gene47366.t1;Parent=MS.gene47366.t1

Gene Sequence

>MS.gene47366

ATGATGAACTATGTCATCATGTTCTTCTTCTTCCTCTTCCTAAGCATCTACATTGTACCATGTCTAGCACATAATGACACACAAGCACTTACTCTCTTTCGCCAACAATCTGACACACACGGTCAACTCCTTACCAACTGGACCGGACCTGAGGCCTGCTCGGCCTCATGGCACGGTGTCACTTGCACGCCAAACAACCGCGTCACAACCCTCGTACTTCCTTCCCTCAATCTCCGAGGACCCATCGACGCTCTTTCTCCCCTTACCCATCTCCGCCTCCTCGATCTCCATAACAACCGCCTGAATGGCACTGTTTCAGCCTCTCTCCTCTCCAACTGCACAAACCTCAAACTCCTCTACCTTGCCGGAAACGACTTTTCCGGCCAAATTCCACCAGAAATCTCCTCCCTAAACAACCTCCTCCGTCTTGACCTCTCCGACAACAACCTCGCCGGAGATATTCCTAACGAAATCTCCCGTTTAACTAACCTTCTCACATTAAGGCTTCAAAACAACGCATTCTCTGGTAACATCCCTGACCTCTCTTCCGCTATGCCGAATCTCACAGAGCTCAACATGACAAACAATGAATTCTACGGCAAAGTACCAAACACAATGCTTAACAAATTCGGAGATGAAAGCTTCTCCGGCAATGAAGGCTTATGTGGTTCAAAACCTTTCCAAGTTTGTTCCTTAACAGAGAACAGTCCTCCTTCTTCCGAACCGGCTCAGACCGTTCCTTCGAACCCGAGTTCTTTCCCTGAAACAAGCGTGATCGCAAGACCAAGAAGCCAACACCATAAAGGGTTAAGCCCTGGAGTAATTGTAGCAATTGTGGTGGCAATTTGTGTTGCATTGTTAGTGGTAACATCGTTTGTTGTTGCTCACTGTTGTGCCAGAGGGAGAGGTGTTAATAGTAATTCCTTAGCGGGTAGTGAGGCTGGGAAGAGGAAGAGTTATGGTAGTGAGAAGAAGGTGTATAATTCAAATGGTGGGGGTGGTGATAGTAGTGATGGGACTAGTGGAACTGATATGAGTAAGCTTGTGTTTTTTGATAGGAGGAATGGCTTTGAGTTGGAGGATTTGTTGCGTGCTTCTGCTGAGATGCTTGGGAAGGGTAGTTTGGGAACTGTTTATAGAGCAGTGCTTGATGATGGTAGTACAGTTGCTGTCAAGAGGTTAAAAGATGCAAATCCTTGTGCTAGGCATGAGTTTGAACAGTATATGGATGTGATTGGGAAGCTTAAACACCCTAATATTATTAAACTTAGAGCTTATTATTATGCCAAGGAAGAAAAGCTTCTAGTCTATGATTATCTCTCCAATGGGAGCTTGCATGCTCTTCTTCATGGTTAGTCTTCAACTCTGAATTGGTCTATGATTATTAGGTTTCATATTTGGCTATATTTCCTTTCATATCAAAACACTAATTTCAAGAAGCACTAGTAGAGCAAGAATAGTTAACTTGTTTCATCTGAGTGAGCATGTAATTGAGTTCAAATATCATGTAAGAACAATTCATGATTAAGAATTTACTTATCTTCGGGTCGATGATAGATTAGTCTAGGGGTCTGTACCTTGGGATACTATATTGATGAAGAATCAAAAAACTAATAATCTCTTGTGATTTGGTTTAATTTTAGGGAGTAAATCAGCATTTTAGTCCTTAAAATTTCAACGGTCAGTCAATTTAGTTCATCAAACTTATGAAATGGCAATTTATCCTTTTACATTGTCAATCAATTTAGTCTTTTTTCAAATTTAGCCCTATAATTTTAAAAGTTATATTTTTGTCTTGATATAACTAAAGAGATATTTTGGTAAATGGACTAAATTGACTGATATTCTTTAATTTACTATTTTTGTATACTCGACCATTATAATTCCGAGGACCGAAATGCTGATTTACTCTATTTTGGGTCTGTCTTATATTTAATTTATTGGGGAATTAGTCTTAGTCCCTGAATCGGAAGGGATTCGTCATTTTAGTCCCTGAATGCAGATGAATTGCAAAATAATCCCTGAATGTAGACTTTGTTAGTCAATTTAGTCCCTGAATGTAGACTCCGTTAGTCACTTTAGTCCCTGAAATTGACCATGCAGGGACTGTTTTGCAATTTCTCTTCATTCAAGGACTAAAGTGACGAATCCTCTCCCATTCAGGGACTAAAATGACTAATTCCCCTTAATTTATTATATTGACAGGGAACCGTGGACCAGGGAGGATTCCATTGGATTGGACAACAAGAATAAGCTTGGTATTGGGAGCAGCAAGAGGGCTTGCTAGGATCCATACAGAGTACAGTGCAGCAAAAGTGCCACATGGGAACGTGAAATCATCCAATGTACTACTTGACAAGAACGGTGTTGCTTGCATATCTGACTTTGGGTTGTCACTACTGTTAAACCCTGTTCATGCAATTGCACGATTGGGTGGGTACAGAGCACCTGAACAGACAGAACAAAAGAGACTGTCTCAGCAGGCAGATGTCTACAGTTTTGGAGTGTTGCTGTTGGAAGTTCTCACAGGGAAAGCTCCTACATTACAGTATCCTTCCCCGGCGAATCGCCCTCGTAAGGTCGAAGAGGAAGAAACTGTGGTGGATCTTCCTAAATGGGTTCGATCAGTTGTGAGAGAAGAGTGGACTGGAGAGGTTTTTGATCAAGAACTTCTGCGATACAAGAACATTGAGGAAGAGCTTGTGTCAATGCTGCATGTTGGGTTGGCTTGTGTGGTGCAGCAGCCAGAGAAGAGGCCAACTATGGTAGATGTTGTTAAAATGATTGAGGATATTAGAGTCGAGCAATCTCCTCTGTGTGAGGACTATGATGAATCACGCAATTCACTTTCACCTTCCATTCCCACTACTGAAGATGGTCTTGCTTAG

Protein sequence

>MS.gene47366.t1

MMNYVIMFFFFLFLSIYIVPCLAHNDTQALTLFRQQSDTHGQLLTNWTGPEACSASWHGVTCTPNNRVTTLVLPSLNLRGPIDALSPLTHLRLLDLHNNRLNGTVSASLLSNCTNLKLLYLAGNDFSGQIPPEISSLNNLLRLDLSDNNLAGDIPNEISRLTNLLTLRLQNNAFSGNIPDLSSAMPNLTELNMTNNEFYGKVPNTMLNKFGDESFSGNEGLCGSKPFQVCSLTENSPPSSEPAQTVPSNPSSFPETSVIARPRSQHHKGLSPGVIVAIVVAICVALLVVTSFVVAHCCARGRGVNSNSLAGSEAGKRKSYGSEKKVYNSNGGGGDSSDGTSGTDMSKLVFFDRRNGFELEDLLRASAEMLGKGSLGTVYRAVLDDGSTVAVKRLKDANPCARHEFEQYMDVIGKLKHPNIIKLRAYYYAKEEKLLVYDYLSNGSLHALLHGNRGPGRIPLDWTTRISLVLGAARGLARIHTEYSAAKVPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYRAPEQTEQKRLSQQADVYSFGVLLLEVLTGKAPTLQYPSPANRPRKVEEEETVVDLPKWVRSVVREEWTGEVFDQELLRYKNIEEELVSMLHVGLACVVQQPEKRPTMVDVVKMIEDIRVEQSPLCEDYDESRNSLSPSIPTTEDGLA