AlfalfaGEDB | MS.gene47682

M. sativa cultivar XinJiangDaYe / MS.gene47682

KEGG: -
GO: GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0006950 GO:0008150 GO:0009611 GO:0030234 GO:0030414 GO:0050896 GO:0061134 GO:0061135 GO:0098772
PFAM: PF00280.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47682.t1	AET00273.1	94.3	70	4	0	1	70	1	70	7.40E-31	142.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47682.t1	P24076	65.7	67	23	0	4	70	2	68	1.6e-18	92.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47682.t1	G7KCZ8	94.3	70	4	0	1	70	1	70	5.3e-31	142.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052089	MS.gene47682	0.804006	2.66E-49	-1.69E-46
MS.gene055549	MS.gene47682	0.814366	1.60E-51	-1.69E-46
MS.gene055550	MS.gene47682	0.822043	2.92E-53	-1.69E-46
MS.gene056530	MS.gene47682	0.815447	9.20E-52	-1.69E-46
MS.gene058493	MS.gene47682	0.815152	1.07E-51	-1.69E-46
MS.gene058494	MS.gene47682	0.808418	3.13E-50	-1.69E-46
MS.gene05884	MS.gene47682	0.828862	7.10E-55	-1.69E-46
MS.gene059514	MS.gene47682	0.814417	1.56E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene004813	MS.gene47682	PPI
MS.gene017021	MS.gene47682	PPI
MS.gene017022	MS.gene47682	PPI
MS.gene036131	MS.gene47682	PPI
MS.gene038093	MS.gene47682	PPI
MS.gene038231	MS.gene47682	PPI
MS.gene066013	MS.gene47682	PPI
MS.gene39886	MS.gene47682	PPI
MS.gene47590	MS.gene47682	PPI
MS.gene49324	MS.gene47682	PPI

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47682.t1	MTR_5g090250	94.286	70	4	1	70	1	70	1.62e-44	137
MS.gene47682.t1	MTR_5g090250	94.286	70	4	1	70	1	70	1.62e-44	137
MS.gene47682.t1	MTR_1g075410	89.706	68	7	3	70	5	72	1.02e-38	122
MS.gene47682.t1	MTR_1g075340	84.286	70	11	1	70	1	70	7.97e-38	120
MS.gene47682.t1	MTR_1g075340	84.286	70	11	1	70	1	70	7.97e-38	120
MS.gene47682.t1	MTR_1g075380	82.353	68	12	3	70	4	71	1.33e-33	110
MS.gene47682.t1	MTR_1g070335	60.000	70	28	1	70	1	70	8.17e-24	85.1
MS.gene47682.t1	MTR_5g045470	62.121	66	25	5	70	4	69	9.91e-24	85.1
MS.gene47682.t1	MTR_1g070330	59.259	54	22	17	70	1	54	1.31e-15	63.9
MS.gene47682.t1	MTR_3g020970	50.794	63	31	8	70	36	98	2.08e-14	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47682.t1	AT2G38870	60.000	70	28	0	1	70	1	70	5.34e-24	85.9
MS.gene47682.t1	AT5G43580	54.688	64	29	0	7	70	36	99	6.50e-19	73.6
MS.gene47682.t1	AT2G38900	48.438	64	33	0	7	70	10	73	1.28e-16	67.0
MS.gene47682.t1	AT2G38900	48.438	64	33	0	7	70	25	88	1.91e-16	67.0
MS.gene47682.t1	AT3G46860	47.619	63	33	0	8	70	23	85	1.50e-13	59.7
MS.gene47682.t1	AT5G43570	45.946	74	34	1	1	68	1	74	4.49e-13	58.9
MS.gene47682.t1	AT5G43570	49.180	61	31	0	8	68	24	84	4.42e-12	56.6
MS.gene47682.t1	AT5G45277	47.170	53	28	0	8	60	2	54	7.58e-11	52.4

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Find 28 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTCTGATGAATGCAA+AGG	0.675933	5.3:-72789651	MS.gene47682:intron
AAACCCTAACCCTGTCACAG+CGG	0.735906	5.3:+72789216	None:intergenic
AACCCTGTCACAGCGGAAGT+CGG	0.575336	5.3:+72789223	None:intergenic
AATGCCATCATTGTGCCAGA+AGG	0.618440	5.3:-72789260	MS.gene47682:CDS
AATTGAGAGGGAGAATCCAT+TGG	0.570404	5.3:-72789285	MS.gene47682:CDS
ACAATGATGGCATTCACCAA+TGG	0.635361	5.3:+72789269	None:intergenic
ACTTCCGCTGTGACAGGGTT+AGG	0.276358	5.3:-72789220	MS.gene47682:CDS
AGATCCTTCTGGCACAATGA+TGG	0.502286	5.3:+72789256	None:intergenic
AGCAGAAGCTACAATTGAGA+GGG	0.593359	5.3:-72789297	MS.gene47682:CDS
AGCTCATGGCCAGAGTTGGT+TGG	0.578782	5.3:-72789335	MS.gene47682:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAAGATGGAATTGTCTATC+AGG	-	chr5.3:72789631-72789650	MS.gene47682:intron	30.0%
AATTGAGAGGGAGAATCCAT+TGG	-	chr5.3:72789532-72789551	MS.gene47682:intron	40.0%
ACAATGATGGCATTCACCAA+TGG	+	chr5.3:72789551-72789570	None:intergenic	40.0%
AGCAGAAGCTACAATTGAGA+GGG	-	chr5.3:72789520-72789539	MS.gene47682:intron	40.0%
GTCTATCAGGTTCCAGTAAT+TGG	-	chr5.3:72789644-72789663	MS.gene47682:intron	40.0%
GTCTGATGAATGCAAAGGTA+AGG	-	chr5.3:72789171-72789190	MS.gene47682:CDS	40.0%
TAGCAGAAGCTACAATTGAG+AGG	-	chr5.3:72789519-72789538	MS.gene47682:intron	40.0%
AATGCCATCATTGTGCCAGA+AGG	-	chr5.3:72789557-72789576	MS.gene47682:intron	45.0%
AGATCCTTCTGGCACAATGA+TGG	+	chr5.3:72789564-72789583	None:intergenic	45.0%
TATGGTCAGGTAAGAGCTCA+TGG	-	chr5.3:72789468-72789487	MS.gene47682:intron	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	72789169	72789670	72789169	ID=MS.gene47682
chr5.3	mRNA	72789169	72789670	72789169	ID=MS.gene47682.t1;Parent=MS.gene47682
chr5.3	exon	72789652	72789670	72789652	ID=MS.gene47682.t1.exon1;Parent=MS.gene47682.t1
chr5.3	CDS	72789652	72789670	72789652	ID=cds.MS.gene47682.t1;Parent=MS.gene47682.t1
chr5.3	exon	72789169	72789362	72789169	ID=MS.gene47682.t1.exon2;Parent=MS.gene47682.t1
chr5.3	CDS	72789169	72789362	72789169	ID=cds.MS.gene47682.t1;Parent=MS.gene47682.t1

Gene Sequence

>MS.gene47682

ATGTCTGATGAATGCAAAGGTAAGGTGTTATAGTAATATAATATGTTTAAATTAAGAGAAATGATATTTTGACAACCACTTTTAAACAACTTTTGTGACAACTTTCTCTCTCATACTCACATTATACTTTTATTCTCTCTCTTCCTTTTTCTCTCTCTATTGTTATTGTCCAATAAGAAGAGAGAAAAAAAGGTTGTCATTAAAGTTGTTTGATTTTGGTTGTCAAAATATCACTCCTCTTAAATTAAATAGTTTGTGAAATTTTAATTATAATTTGATGGTTGAATTAATCAATATTGTATGGTCAGGTAAGAGCTCATGGCCAGAGTTGGTTGGAGTGGAAGGAAAGGTAGCAGAAGCTACAATTGAGAGGGAGAATCCATTGGTGAATGCCATCATTGTGCCAGAAGGATCTTTTGTCACCGCCGACTTCCGCTGTGACAGGGTTAGGGTTTGGGTTGATAAAGATGGAATTGTCTATCAGGTTCCAGTAATTGGATAG

Protein sequence

>MS.gene47682.t1

MSDECKGKSSWPELVGVEGKVAEATIERENPLVNAIIVPEGSFVTADFRCDRVRVWVDKDGIVYQVPVIG