Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47794.t1 | XP_003617304.2 | 92.6 | 204 | 15 | 0 | 1 | 204 | 136 | 339 | 4.90E-99 | 370.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47794.t1 | Q54PM7 | 40.3 | 201 | 111 | 4 | 1 | 196 | 100 | 296 | 6.8e-33 | 142.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47794.t1 | G7KCY8 | 92.6 | 204 | 15 | 0 | 1 | 204 | 83 | 286 | 3.5e-99 | 370.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049825 | MS.gene47794 | 0.823931 | 1.06E-53 | -1.69E-46 |
| MS.gene049873 | MS.gene47794 | 0.816078 | 6.66E-52 | -1.69E-46 |
| MS.gene050559 | MS.gene47794 | 0.807607 | 4.65E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene47794 | 0.843567 | 1.29E-58 | -1.69E-46 |
| MS.gene052309 | MS.gene47794 | -0.80518 | 1.51E-49 | -1.69E-46 |
| MS.gene052358 | MS.gene47794 | -0.830173 | 3.41E-55 | -1.69E-46 |
| MS.gene052586 | MS.gene47794 | 0.802301 | 5.99E-49 | -1.69E-46 |
| MS.gene053006 | MS.gene47794 | 0.826055 | 3.35E-54 | -1.69E-46 |
| MS.gene053294 | MS.gene47794 | 0.819497 | 1.13E-52 | -1.69E-46 |
| MS.gene053963 | MS.gene47794 | 0.831084 | 2.04E-55 | -1.69E-46 |
| MS.gene053995 | MS.gene47794 | 0.827771 | 1.30E-54 | -1.69E-46 |
| MS.gene05548 | MS.gene47794 | 0.802086 | 6.63E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene47794 | 0.803703 | 3.07E-49 | -1.69E-46 |
| MS.gene056091 | MS.gene47794 | 0.817727 | 2.84E-52 | -1.69E-46 |
| MS.gene056506 | MS.gene47794 | 0.811232 | 7.76E-51 | -1.69E-46 |
| MS.gene057079 | MS.gene47794 | 0.841209 | 5.46E-58 | -1.69E-46 |
| MS.gene058037 | MS.gene47794 | 0.80323 | 3.85E-49 | -1.69E-46 |
| MS.gene058635 | MS.gene47794 | 0.800654 | 1.30E-48 | -1.69E-46 |
| MS.gene05954 | MS.gene47794 | 0.833404 | 5.44E-56 | -1.69E-46 |
| MS.gene060840 | MS.gene47794 | 0.808065 | 3.72E-50 | -1.69E-46 |
| MS.gene061040 | MS.gene47794 | -0.836531 | 8.86E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACTCGTCAGCATTGTATT+TGG | 0.215745 | 5.4:+71200815 | None:intergenic |
| TTTAATATTTGCAGTGGATA+TGG | 0.250578 | 5.4:-71200890 | MS.gene47794:intron |
| AAGCACCCCAGGAAAGTATT+TGG | 0.301399 | 5.4:+71199792 | None:intergenic |
| TATACTGACCTTAGGTCTAA+TGG | 0.311823 | 5.4:+71199768 | None:intergenic |
| TGCATTTCCAAATACTTTCC+TGG | 0.318412 | 5.4:-71199799 | MS.gene47794:CDS |
| GCTAAAATCGGCGCAAGAAT+TGG | 0.333697 | 5.4:-71200515 | MS.gene47794:CDS |
| GAAGCAAGGGCTGCAGGCGC+AGG | 0.355339 | 5.4:-71201902 | MS.gene47794:CDS |
| GCAGGCGCAGGACCTGTCTT+AGG | 0.366536 | 5.4:-71201890 | MS.gene47794:CDS |
| GCATATGGATTTACTGAAGA+TGG | 0.381525 | 5.4:-71201929 | MS.gene47794:CDS |
| TCTTCTGCAGAAGAATTGAT+TGG | 0.381604 | 5.4:-71200770 | MS.gene47794:CDS |
| TCAAGTGTTAAAGCTGTTGT+AGG | 0.385362 | 5.4:-71200490 | MS.gene47794:CDS |
| CAGGACCTGTCTTAGGTGAC+TGG | 0.387073 | 5.4:-71201883 | MS.gene47794:CDS |
| GGAACAATTGGCAAACTTCA+TGG | 0.391537 | 5.4:-71201983 | MS.gene47794:CDS |
| ATACTGACCTTAGGTCTAAT+GGG | 0.413875 | 5.4:+71199769 | None:intergenic |
| AAATAAGATCTTGCTAAAAT+CGG | 0.422645 | 5.4:-71200527 | MS.gene47794:CDS |
| GCATTTCCAAATACTTTCCT+GGG | 0.443620 | 5.4:-71199798 | MS.gene47794:CDS |
| CATGGATGTGTATTAATTGC+TGG | 0.450862 | 5.4:-71201965 | MS.gene47794:CDS |
| GCTCTTGCAAGTGGAACAAT+TGG | 0.455844 | 5.4:-71201995 | MS.gene47794:CDS |
| TGGAACGAGTGCTGCAATGC+GGG | 0.460985 | 5.4:+71200588 | None:intergenic |
| GCAAACACAAAGTGGGATGT+AGG | 0.461172 | 5.4:-71199837 | MS.gene47794:CDS |
| GGACTTACGCAGATCCATCT+TGG | 0.461737 | 5.4:-71200612 | MS.gene47794:CDS |
| CTGTCTTAGGTGACTGGGGC+AGG | 0.466961 | 5.4:-71201877 | MS.gene47794:intron |
| AGACTTGGATTGTGCGGTAA+AGG | 0.467200 | 5.4:-71200466 | MS.gene47794:intron |
| GACTTACGCAGATCCATCTT+GGG | 0.471146 | 5.4:-71200611 | MS.gene47794:CDS |
| GGCACAGGAACCATTGCATA+TGG | 0.473099 | 5.4:-71201944 | MS.gene47794:CDS |
| CTTCTGCAGAAGAATTGATT+GGG | 0.475265 | 5.4:-71200769 | MS.gene47794:intron |
| GGTCTAATGGGAAGCACCCC+AGG | 0.482189 | 5.4:+71199781 | None:intergenic |
| GGAAAAGAAGCAAGGGCTGC+AGG | 0.483573 | 5.4:-71201908 | MS.gene47794:CDS |
| TTTCCGCTTGTCATGGTTGG+TGG | 0.487092 | 5.4:-71199870 | MS.gene47794:CDS |
| AAAGCTGTTGTAGGGAGACT+TGG | 0.491123 | 5.4:-71200481 | MS.gene47794:CDS |
| ACATATAACCTCACATCACT+TGG | 0.500294 | 5.4:+71202037 | None:intergenic |
| TCTGCACAGGATACTACAAC+TGG | 0.504981 | 5.4:+71200568 | None:intergenic |
| AGGACCTGTCTTAGGTGACT+GGG | 0.506306 | 5.4:-71201882 | MS.gene47794:CDS |
| GCCGTTGCTGCTCTTGCAAG+TGG | 0.509723 | 5.4:-71202004 | MS.gene47794:CDS |
| GTAGTATCCTGTGCAGAGGC+TGG | 0.511756 | 5.4:-71200562 | MS.gene47794:CDS |
| CAAACACAAAGTGGGATGTA+GGG | 0.530904 | 5.4:-71199836 | MS.gene47794:CDS |
| TCCACTTGCAAGAGCAGCAA+CGG | 0.536786 | 5.4:+71202003 | None:intergenic |
| GCTGCAATGCGGGCCCAAGA+TGG | 0.543762 | 5.4:+71200598 | None:intergenic |
| CTCATCGCCAGCCTCTGCAC+AGG | 0.559171 | 5.4:+71200555 | None:intergenic |
| GGTGCTTCCCATTAGACCTA+AGG | 0.571799 | 5.4:-71199776 | None:intergenic |
| TTCAGTAAATCCATATGCAA+TGG | 0.574987 | 5.4:+71201934 | None:intergenic |
| CAAGTGTTAAAGCTGTTGTA+GGG | 0.578022 | 5.4:-71200489 | MS.gene47794:CDS |
| TGGATATGGAATATCTGCGC+AGG | 0.586238 | 5.4:-71200876 | MS.gene47794:CDS |
| CTGCCCCAGTCACCTAAGAC+AGG | 0.590138 | 5.4:+71201878 | None:intergenic |
| TTCTTGAAGCAAACACAAAG+TGG | 0.592334 | 5.4:-71199845 | MS.gene47794:CDS |
| CTGAAGATGGAAAAGAAGCA+AGG | 0.600282 | 5.4:-71201916 | MS.gene47794:CDS |
| ACGCCACCAACCATGACAAG+CGG | 0.606206 | 5.4:+71199867 | None:intergenic |
| TGAAGATGGAAAAGAAGCAA+GGG | 0.610105 | 5.4:-71201915 | MS.gene47794:CDS |
| ATAGAAGCACATGATGGTCG+TGG | 0.617860 | 5.4:-71200839 | MS.gene47794:CDS |
| AGTTGTAGTATCCTGTGCAG+AGG | 0.621004 | 5.4:-71200566 | MS.gene47794:CDS |
| TCTTGAAGCAAACACAAAGT+GGG | 0.629952 | 5.4:-71199844 | MS.gene47794:CDS |
| CATTTCCAAATACTTTCCTG+GGG | 0.634649 | 5.4:-71199797 | MS.gene47794:CDS |
| GCGGTAATAGAAGCACATGA+TGG | 0.649285 | 5.4:-71200845 | MS.gene47794:CDS |
| TGTGTATTAATTGCTGGCAC+AGG | 0.650395 | 5.4:-71201959 | MS.gene47794:CDS |
| CTGTGCAGAGGCTGGCGATG+AGG | 0.651932 | 5.4:-71200554 | MS.gene47794:CDS |
| ATATATTTCCAAGTGATGTG+AGG | 0.653488 | 5.4:-71202045 | MS.gene47794:CDS |
| ATCTGCGCAGGCACTAACTG+CGG | 0.661132 | 5.4:-71200864 | MS.gene47794:CDS |
| CTGGAACGAGTGCTGCAATG+CGG | 0.681899 | 5.4:+71200587 | None:intergenic |
| GTAGGGAGACTTGGATTGTG+CGG | 0.692237 | 5.4:-71200472 | MS.gene47794:CDS |
| GGACCTGTCTTAGGTGACTG+GGG | 0.694401 | 5.4:-71201881 | MS.gene47794:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATTATTACTTTCATT+TGG | - | chr5.4:71200838-71200857 | MS.gene47794:CDS | 10.0% |
| !! | TTAAATTTAAAAGAAATTGA+TGG | - | chr5.4:71201834-71201853 | MS.gene47794:intron | 10.0% |
| !! | AACTTATAGTTTATATGAAA+AGG | + | chr5.4:71200174-71200193 | None:intergenic | 15.0% |
| !! | TTATTGATATAAACTGTTTA+TGG | - | chr5.4:71200219-71200238 | MS.gene47794:intron | 15.0% |
| !!! | GAAAGTAATAATTTTTACAT+TGG | + | chr5.4:71200835-71200854 | None:intergenic | 15.0% |
| !! | AAAAATGGATATAATCAAGT+TGG | + | chr5.4:71200899-71200918 | None:intergenic | 20.0% |
| !! | AAAAGGTAACATCAATTTAT+AGG | + | chr5.4:71200422-71200441 | None:intergenic | 20.0% |
| !! | AAATAAGATCTTGCTAAAAT+CGG | - | chr5.4:71201297-71201316 | MS.gene47794:intron | 20.0% |
| !! | ATAGATTTGAAGAAAGAAAA+AGG | + | chr5.4:71200439-71200458 | None:intergenic | 20.0% |
| !! | TTATCCATACTATTAATATG+AGG | + | chr5.4:71201777-71201796 | None:intergenic | 20.0% |
| !! | TTTACCTCATATTAATAGTA+TGG | - | chr5.4:71201770-71201789 | MS.gene47794:intron | 20.0% |
| !!! | AAATTTTGAAGTAATTGACT+TGG | - | chr5.4:71201795-71201814 | MS.gene47794:intron | 20.0% |
| !!! | TCAAAATGGCTTTAAATTAT+AGG | + | chr5.4:71201144-71201163 | None:intergenic | 20.0% |
| !!! | TGACTGATATTATGTAATTT+TGG | - | chr5.4:71201914-71201933 | MS.gene47794:CDS | 20.0% |
| ! | AATTTAAATGAATGCTCTAG+AGG | + | chr5.4:71201821-71201840 | None:intergenic | 25.0% |
| ! | ACATCAATCATAATATGACT+AGG | - | chr5.4:71200480-71200499 | MS.gene47794:CDS | 25.0% |
| ! | ATTACATGTAGATCTTAATG+TGG | - | chr5.4:71201524-71201543 | MS.gene47794:intron | 25.0% |
| ! | GCAAAAATGTCAACAAAAAA+TGG | + | chr5.4:71200914-71200933 | None:intergenic | 25.0% |
| ! | TAAGCTATCTCTATAACAAA+AGG | - | chr5.4:71200133-71200152 | MS.gene47794:intron | 25.0% |
| ! | TACACAAATCATCATCATAT+AGG | + | chr5.4:71201890-71201909 | None:intergenic | 25.0% |
| ! | TTTAATATTTGCAGTGGATA+TGG | - | chr5.4:71200934-71200953 | MS.gene47794:intron | 25.0% |
| ! | TTTACATTGGATGAAAATGA+GGG | + | chr5.4:71200822-71200841 | None:intergenic | 25.0% |
| !! | AAATTACGATTTTTACTGCT+TGG | - | chr5.4:71201704-71201723 | MS.gene47794:intron | 25.0% |
| !! | TGAATCTTATTGGATGTTTT+TGG | + | chr5.4:71200691-71200710 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+AGG | + | chr5.4:71200068-71200087 | None:intergenic | 25.0% |
| !! | TTTTACATTGGATGAAAATG+AGG | + | chr5.4:71200823-71200842 | None:intergenic | 25.0% |
| !! | TTTTGCTTTAATATTTGCAG+TGG | - | chr5.4:71200928-71200947 | MS.gene47794:intron | 25.0% |
| !!! | ATGACTAGGAATTGTTTTTT+TGG | - | chr5.4:71200494-71200513 | MS.gene47794:CDS | 25.0% |
| !!! | CAATAAGATTCAGTTTTGTT+CGG | - | chr5.4:71200699-71200718 | MS.gene47794:intron | 25.0% |
| !!! | TTTTTTGGAAAAAGAACCTT+CGG | - | chr5.4:71200509-71200528 | MS.gene47794:CDS | 25.0% |
| ACCCAAAACCTTAAAACATT+GGG | - | chr5.4:71200763-71200782 | MS.gene47794:intron | 30.0% | |
| ACCTTAAAACATTGGGTATA+CGG | - | chr5.4:71200770-71200789 | MS.gene47794:CDS | 30.0% | |
| ACTGACATTTACAATTGAAG+GGG | + | chr5.4:71201675-71201694 | None:intergenic | 30.0% | |
| ATATATTTCCAAGTGATGTG+AGG | - | chr5.4:71199779-71199798 | MS.gene47794:CDS | 30.0% | |
| CACTGACATTTACAATTGAA+GGG | + | chr5.4:71201676-71201695 | None:intergenic | 30.0% | |
| CATGTAAAAAAGAGCTAGTT+TGG | + | chr5.4:71200327-71200346 | None:intergenic | 30.0% | |
| CGAACAAAACTGAATCTTAT+TGG | + | chr5.4:71200701-71200720 | None:intergenic | 30.0% | |
| TACCCAAAACCTTAAAACAT+TGG | - | chr5.4:71200762-71200781 | MS.gene47794:intron | 30.0% | |
| TTCAGTAAATCCATATGCAA+TGG | + | chr5.4:71199893-71199912 | None:intergenic | 30.0% | |
| TTTACATGAAAATGAGCTTC+TGG | - | chr5.4:71200339-71200358 | MS.gene47794:intron | 30.0% | |
| ! | AAAAAAGAGCTAGTTTGGAT+TGG | + | chr5.4:71200322-71200341 | None:intergenic | 30.0% |
| ! | AGTAGTATTTTACAAACGCT+TGG | - | chr5.4:71201027-71201046 | MS.gene47794:intron | 30.0% |
| !! | AATTTAAAGCCATTTTGAGC+TGG | - | chr5.4:71201146-71201165 | MS.gene47794:intron | 30.0% |
| !! | GTAATTTTGGCAGATGAAAA+AGG | - | chr5.4:71201927-71201946 | MS.gene47794:CDS | 30.0% |
| !! | GTTGTTTTCATAAGCAATCA+TGG | - | chr5.4:71200191-71200210 | MS.gene47794:intron | 30.0% |
| !! | TGAAGTAACATTTTGTTGTG+AGG | + | chr5.4:71201488-71201507 | None:intergenic | 30.0% |
| !! | TTTTTGGAAAAAGAACCTTC+GGG | - | chr5.4:71200510-71200529 | MS.gene47794:CDS | 30.0% |
| !!! | AATGTTTTAAGGTTTTGGGT+AGG | + | chr5.4:71200763-71200782 | None:intergenic | 30.0% |
| !!! | ACCCAATGTTTTAAGGTTTT+GGG | + | chr5.4:71200767-71200786 | None:intergenic | 30.0% |
| !!! | ATGTTTTAAGGTTTTGGGTA+GGG | + | chr5.4:71200762-71200781 | None:intergenic | 30.0% |
| !!! | TACCCAATGTTTTAAGGTTT+TGG | + | chr5.4:71200768-71200787 | None:intergenic | 30.0% |
| ACATATAACCTCACATCACT+TGG | + | chr5.4:71199790-71199809 | None:intergenic | 35.0% | |
| ACATCTACACTCAAAACTAG+GGG | - | chr5.4:71200616-71200635 | MS.gene47794:CDS | 35.0% | |
| CAAGTGTTAAAGCTGTTGTA+GGG | - | chr5.4:71201335-71201354 | MS.gene47794:intron | 35.0% | |
| CACATCTACACTCAAAACTA+GGG | - | chr5.4:71200615-71200634 | MS.gene47794:CDS | 35.0% | |
| CATGGATGTGTATTAATTGC+TGG | - | chr5.4:71199859-71199878 | MS.gene47794:CDS | 35.0% | |
| CATTTCCAAATACTTTCCTG+GGG | - | chr5.4:71202027-71202046 | MS.gene47794:CDS | 35.0% | |
| CCTTAAAACATTGGGTATAC+GGG | - | chr5.4:71200771-71200790 | MS.gene47794:CDS | 35.0% | |
| CTTCTGCAGAAGAATTGATT+GGG | - | chr5.4:71201055-71201074 | MS.gene47794:intron | 35.0% | |
| GAGTAACCACTTAAGTGATT+TGG | - | chr5.4:71200588-71200607 | MS.gene47794:CDS | 35.0% | |
| GCATATGGATTTACTGAAGA+TGG | - | chr5.4:71199895-71199914 | MS.gene47794:intron | 35.0% | |
| GCATTTCCAAATACTTTCCT+GGG | - | chr5.4:71202026-71202045 | MS.gene47794:CDS | 35.0% | |
| GTTGAGCAACATATAAGTGA+AGG | + | chr5.4:71200798-71200817 | None:intergenic | 35.0% | |
| TCAAGTGTTAAAGCTGTTGT+AGG | - | chr5.4:71201334-71201353 | MS.gene47794:intron | 35.0% | |
| TCTTCTGCAGAAGAATTGAT+TGG | - | chr5.4:71201054-71201073 | MS.gene47794:intron | 35.0% | |
| TCTTGAAGCAAACACAAAGT+GGG | - | chr5.4:71201980-71201999 | MS.gene47794:CDS | 35.0% | |
| TGAAGATGGAAAAGAAGCAA+GGG | - | chr5.4:71199909-71199928 | MS.gene47794:intron | 35.0% | |
| TGCATTTCCAAATACTTTCC+TGG | - | chr5.4:71202025-71202044 | MS.gene47794:CDS | 35.0% | |
| TGCTAAGAAATAGAGAGAGA+GGG | + | chr5.4:71200013-71200032 | None:intergenic | 35.0% | |
| TTCTTGAAGCAAACACAAAG+TGG | - | chr5.4:71201979-71201998 | MS.gene47794:CDS | 35.0% | |
| ! | GCACTGACATTTACAATTGA+AGG | + | chr5.4:71201677-71201696 | None:intergenic | 35.0% |
| !! | TTTTGGAAAAAGAACCTTCG+GGG | - | chr5.4:71200511-71200530 | MS.gene47794:CDS | 35.0% |
| !!! | AGTATTTTTTGGACCGCATT+TGG | - | chr5.4:71200727-71200746 | MS.gene47794:intron | 35.0% |
| !!! | GAAAGCATTTTCCTGCTAAT+TGG | + | chr5.4:71200396-71200415 | None:intergenic | 35.0% |
| !!! | GTTCGGTTTGCAGTATTTTT+TGG | - | chr5.4:71200716-71200735 | MS.gene47794:intron | 35.0% |
| !!! | TGTTTTAAGGTTTTGGGTAG+GGG | + | chr5.4:71200761-71200780 | None:intergenic | 35.0% |
| !!! | TTTTTTGCCGCAAAATCGAT+CGG | + | chr5.4:71200659-71200678 | None:intergenic | 35.0% |
| AATACGTGCTGTATCTGTGT+AGG | - | chr5.4:71201639-71201658 | MS.gene47794:intron | 40.0% | |
| ACTTGAGAGATCTCGACATT+GGG | - | chr5.4:71200561-71200580 | MS.gene47794:CDS | 40.0% | |
| AGACTGAGAATCCAATTAGC+AGG | - | chr5.4:71200382-71200401 | MS.gene47794:intron | 40.0% | |
| CAAACACAAAGTGGGATGTA+GGG | - | chr5.4:71201988-71202007 | MS.gene47794:CDS | 40.0% | |
| CATCTACACTCAAAACTAGG+GGG | - | chr5.4:71200617-71200636 | MS.gene47794:CDS | 40.0% | |
| CATGTGTCAACTTATCAGTG+TGG | + | chr5.4:71201591-71201610 | None:intergenic | 40.0% | |
| CCACATCTACACTCAAAACT+AGG | - | chr5.4:71200614-71200633 | MS.gene47794:CDS | 40.0% | |
| CTACTCGTCAGCATTGTATT+TGG | + | chr5.4:71201012-71201031 | None:intergenic | 40.0% | |
| CTGAAGATGGAAAAGAAGCA+AGG | - | chr5.4:71199908-71199927 | MS.gene47794:intron | 40.0% | |
| GGAACAATTGGCAAACTTCA+TGG | - | chr5.4:71199841-71199860 | MS.gene47794:CDS | 40.0% | |
| GTGCTAAGAAATAGAGAGAG+AGG | + | chr5.4:71200014-71200033 | None:intergenic | 40.0% | |
| GTTTATCCAAACAAGGCCAA+AGG | + | chr5.4:71200061-71200080 | None:intergenic | 40.0% | |
| TGACAAATTCCACGAAGCAT+CGG | + | chr5.4:71201424-71201443 | None:intergenic | 40.0% | |
| TGGTGTCCAAATCACTTAAG+TGG | + | chr5.4:71200597-71200616 | None:intergenic | 40.0% | |
| TGTGTATTAATTGCTGGCAC+AGG | - | chr5.4:71199865-71199884 | MS.gene47794:CDS | 40.0% | |
| ! | CACCTGATTTTCAAAGAGAC+GGG | + | chr5.4:71201193-71201212 | None:intergenic | 40.0% |
| ! | CCACCTGATTTTCAAAGAGA+CGG | + | chr5.4:71201194-71201213 | None:intergenic | 40.0% |
| ! | CCCGTATACCCAATGTTTTA+AGG | + | chr5.4:71200774-71200793 | None:intergenic | 40.0% |
| ! | TACCCGTCTCTTTGAAAATC+AGG | - | chr5.4:71201188-71201207 | MS.gene47794:intron | 40.0% |
| !! | ATCAGTTCCGATCGATTTTG+CGG | - | chr5.4:71200649-71200668 | MS.gene47794:intron | 40.0% |
| !!! | CCTAGTTTTGAGTGTAGATG+TGG | + | chr5.4:71200617-71200636 | None:intergenic | 40.0% |
| AAAAAGAACCTTCGGGGTGT+TGG | - | chr5.4:71200517-71200536 | MS.gene47794:CDS | 45.0% | |
| AAAGACCTTCCCTCCTGTTA+GGG | + | chr5.4:71200866-71200885 | None:intergenic | 45.0% | |
| AAAGCTGTTGTAGGGAGACT+TGG | - | chr5.4:71201343-71201362 | MS.gene47794:intron | 45.0% | |
| AATGAGCTTCTGGTGAAGCA+AGG | - | chr5.4:71200349-71200368 | MS.gene47794:intron | 45.0% | |
| ACCCTGTATCCAGCTCAAAA+TGG | + | chr5.4:71201158-71201177 | None:intergenic | 45.0% | |
| AGACTTGGATTGTGCGGTAA+AGG | - | chr5.4:71201358-71201377 | MS.gene47794:intron | 45.0% | |
| AGAGAGAGAGGGAAAAGATG+AGG | + | chr5.4:71200002-71200021 | None:intergenic | 45.0% | |
| AGTTGTAGTATCCTGTGCAG+AGG | - | chr5.4:71201258-71201277 | MS.gene47794:intron | 45.0% | |
| CACTTGAGAGATCTCGACAT+TGG | - | chr5.4:71200560-71200579 | MS.gene47794:CDS | 45.0% | |
| CTGTATCTGTGTAGGACACT+GGG | - | chr5.4:71201647-71201666 | MS.gene47794:intron | 45.0% | |
| CTTTCATTTGGCACCCTAAC+AGG | - | chr5.4:71200850-71200869 | MS.gene47794:CDS | 45.0% | |
| GACTTACGCAGATCCATCTT+GGG | - | chr5.4:71201213-71201232 | MS.gene47794:intron | 45.0% | |
| GCAAACACAAAGTGGGATGT+AGG | - | chr5.4:71201987-71202006 | MS.gene47794:CDS | 45.0% | |
| GCTAAAATCGGCGCAAGAAT+TGG | - | chr5.4:71201309-71201328 | MS.gene47794:intron | 45.0% | |
| GCTCTTGCAAGTGGAACAAT+TGG | - | chr5.4:71199829-71199848 | MS.gene47794:CDS | 45.0% | |
| GTGCTTCCCATTAGACCTAA+GGG | - | chr5.4:71202049-71202068 | MS.gene47794:CDS | 45.0% | |
| TCTGCACAGGATACTACAAC+TGG | + | chr5.4:71201259-71201278 | None:intergenic | 45.0% | |
| TGGATATGGAATATCTGCGC+AGG | - | chr5.4:71200948-71200967 | MS.gene47794:intron | 45.0% | |
| ! | AAAAGAACCTTCGGGGTGTT+GGG | - | chr5.4:71200518-71200537 | MS.gene47794:CDS | 45.0% |
| ! | AAACAAGGCCAAAGGTGTAG+AGG | + | chr5.4:71200053-71200072 | None:intergenic | 45.0% |
| ! | AACAAGGCCAAAGGTGTAGA+GGG | + | chr5.4:71200052-71200071 | None:intergenic | 45.0% |
| ! | ATAGAAGCACATGATGGTCG+TGG | - | chr5.4:71200985-71201004 | MS.gene47794:intron | 45.0% |
| ! | CCGTCTCTTTGAAAATCAGG+TGG | - | chr5.4:71201191-71201210 | MS.gene47794:intron | 45.0% |
| ! | GCGGTAATAGAAGCACATGA+TGG | - | chr5.4:71200979-71200998 | MS.gene47794:intron | 45.0% |
| !! | AAGCACCCCAGGAAAGTATT+TGG | + | chr5.4:71202035-71202054 | None:intergenic | 45.0% |
| !! | AGCCATTTTGAGCTGGATAC+AGG | - | chr5.4:71201153-71201172 | MS.gene47794:intron | 45.0% |
| !! | AGGGGTGTTCAATCCAAATG+CGG | + | chr5.4:71200743-71200762 | None:intergenic | 45.0% |
| !! | GCCATTTTGAGCTGGATACA+GGG | - | chr5.4:71201154-71201173 | MS.gene47794:intron | 45.0% |
| !! | TCTACACCTTTGGCCTTGTT+TGG | - | chr5.4:71200052-71200071 | MS.gene47794:intron | 45.0% |
| AGGACCTGTCTTAGGTGACT+GGG | - | chr5.4:71199942-71199961 | MS.gene47794:intron | 50.0% | |
| CACACATTACCGATGCTTCG+TGG | - | chr5.4:71201412-71201431 | MS.gene47794:intron | 50.0% | |
| CATTTGGCACCCTAACAGGA+GGG | - | chr5.4:71200854-71200873 | MS.gene47794:CDS | 50.0% | |
| GAAAGACCTTCCCTCCTGTT+AGG | + | chr5.4:71200867-71200886 | None:intergenic | 50.0% | |
| GCTGTATCTGTGTAGGACAC+TGG | - | chr5.4:71201646-71201665 | MS.gene47794:intron | 50.0% | |
| GGACTTACGCAGATCCATCT+TGG | - | chr5.4:71201212-71201231 | MS.gene47794:intron | 50.0% | |
| GGCACAGGAACCATTGCATA+TGG | - | chr5.4:71199880-71199899 | MS.gene47794:CDS | 50.0% | |
| GGTGCTTCCCATTAGACCTA+AGG | - | chr5.4:71202048-71202067 | MS.gene47794:CDS | 50.0% | |
| GTAGGGAGACTTGGATTGTG+CGG | - | chr5.4:71201352-71201371 | MS.gene47794:intron | 50.0% | |
| TCATTTGGCACCCTAACAGG+AGG | - | chr5.4:71200853-71200872 | MS.gene47794:CDS | 50.0% | |
| TCCACTTGCAAGAGCAGCAA+CGG | + | chr5.4:71199824-71199843 | None:intergenic | 50.0% | |
| TTTACGCCCCTCTACACCTT+TGG | - | chr5.4:71200042-71200061 | MS.gene47794:intron | 50.0% | |
| TTTCCGCTTGTCATGGTTGG+TGG | - | chr5.4:71201954-71201973 | MS.gene47794:CDS | 50.0% | |
| ! | ACAAGGCCAAAGGTGTAGAG+GGG | + | chr5.4:71200051-71200070 | None:intergenic | 50.0% |
| ! | GCTTTTCCGCTTGTCATGGT+TGG | - | chr5.4:71201951-71201970 | MS.gene47794:CDS | 50.0% |
| ! | GGTGTAGAGGGGCGTAAAAT+AGG | + | chr5.4:71200040-71200059 | None:intergenic | 50.0% |
| ACGCCACCAACCATGACAAG+CGG | + | chr5.4:71201960-71201979 | None:intergenic | 55.0% | |
| ATCTGCGCAGGCACTAACTG+CGG | - | chr5.4:71200960-71200979 | MS.gene47794:intron | 55.0% | |
| CAGGACCTGTCTTAGGTGAC+TGG | - | chr5.4:71199941-71199960 | MS.gene47794:intron | 55.0% | |
| CTGGTGAAGCAAGGTGGTGT+TGG | - | chr5.4:71200358-71200377 | MS.gene47794:intron | 55.0% | |
| GAGCTTCTGGTGAAGCAAGG+TGG | - | chr5.4:71200352-71200371 | MS.gene47794:intron | 55.0% | |
| GGAAAAGAAGCAAGGGCTGC+AGG | - | chr5.4:71199916-71199935 | MS.gene47794:intron | 55.0% | |
| GGACCTGTCTTAGGTGACTG+GGG | - | chr5.4:71199943-71199962 | MS.gene47794:intron | 55.0% | |
| GTAGTATCCTGTGCAGAGGC+TGG | - | chr5.4:71201262-71201281 | MS.gene47794:intron | 55.0% | |
| ! | AGGCGCTTTTCCGCTTGTCA+TGG | - | chr5.4:71201947-71201966 | MS.gene47794:CDS | 55.0% |
| ! | CTGGAACGAGTGCTGCAATG+CGG | + | chr5.4:71201240-71201259 | None:intergenic | 55.0% |
| ! | TGGAACGAGTGCTGCAATGC+GGG | + | chr5.4:71201239-71201258 | None:intergenic | 55.0% |
| !! | TTCGGGGTGTTGGGTCACAA+GGG | - | chr5.4:71200527-71200546 | MS.gene47794:CDS | 55.0% |
| CTGCCCCAGTCACCTAAGAC+AGG | + | chr5.4:71199949-71199968 | None:intergenic | 60.0% | |
| CTGTCTTAGGTGACTGGGGC+AGG | - | chr5.4:71199947-71199966 | MS.gene47794:intron | 60.0% | |
| CTTGTGACCCAACACCCCGA+AGG | + | chr5.4:71200528-71200547 | None:intergenic | 60.0% | |
| GCCGTTGCTGCTCTTGCAAG+TGG | - | chr5.4:71199820-71199839 | MS.gene47794:CDS | 60.0% | |
| TGGCACCCTAACAGGAGGGA+AGG | - | chr5.4:71200858-71200877 | MS.gene47794:CDS | 60.0% | |
| !! | CTTCGGGGTGTTGGGTCACA+AGG | - | chr5.4:71200526-71200545 | MS.gene47794:CDS | 60.0% |
| !! | GGTCTAATGGGAAGCACCCC+AGG | + | chr5.4:71202046-71202065 | None:intergenic | 60.0% |
| !! | TCGGGGTGTTGGGTCACAAG+GGG | - | chr5.4:71200528-71200547 | MS.gene47794:CDS | 60.0% |
| CTCATCGCCAGCCTCTGCAC+AGG | + | chr5.4:71201272-71201291 | None:intergenic | 65.0% | |
| CTGTGCAGAGGCTGGCGATG+AGG | - | chr5.4:71201270-71201289 | MS.gene47794:intron | 65.0% | |
| GCAGGCGCAGGACCTGTCTT+AGG | - | chr5.4:71199934-71199953 | MS.gene47794:intron | 65.0% | |
| GCTGCAATGCGGGCCCAAGA+TGG | + | chr5.4:71201229-71201248 | None:intergenic | 65.0% | |
| GAAGCAAGGGCTGCAGGCGC+AGG | - | chr5.4:71199922-71199941 | MS.gene47794:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 71199777 | 71202069 | 71199777 | ID=MS.gene47794 |
| chr5.4 | mRNA | 71199777 | 71202069 | 71199777 | ID=MS.gene47794.t1;Parent=MS.gene47794 |
| chr5.4 | exon | 71201878 | 71202069 | 71201878 | ID=MS.gene47794.t1.exon1;Parent=MS.gene47794.t1 |
| chr5.4 | CDS | 71201878 | 71202069 | 71201878 | ID=cds.MS.gene47794.t1;Parent=MS.gene47794.t1 |
| chr5.4 | exon | 71200770 | 71200898 | 71200770 | ID=MS.gene47794.t1.exon2;Parent=MS.gene47794.t1 |
| chr5.4 | CDS | 71200770 | 71200898 | 71200770 | ID=cds.MS.gene47794.t1;Parent=MS.gene47794.t1 |
| chr5.4 | exon | 71200467 | 71200636 | 71200467 | ID=MS.gene47794.t1.exon3;Parent=MS.gene47794.t1 |
| chr5.4 | CDS | 71200467 | 71200636 | 71200467 | ID=cds.MS.gene47794.t1;Parent=MS.gene47794.t1 |
| chr5.4 | exon | 71199777 | 71199906 | 71199777 | ID=MS.gene47794.t1.exon4;Parent=MS.gene47794.t1 |
| chr5.4 | CDS | 71199777 | 71199906 | 71199777 | ID=cds.MS.gene47794.t1;Parent=MS.gene47794.t1 |
| Gene Sequence |
| Protein sequence |
