AlfalfaGEDB | MS.gene49643

M. sativa cultivar XinJiangDaYe / MS.gene49643

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49643.t1	RHN55221.1	51.8	137	18	1	1	89	1	137	1.20E-24	122.9

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49643.t1	A0A396HRT1	51.8	137	18	1	1	89	1	137	8.7e-25	122.9

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene49643	0.814993	1.16E-51	-1.69E-46
MS.gene049977	MS.gene49643	0.810229	1.28E-50	-1.69E-46
MS.gene051594	MS.gene49643	0.801732	7.84E-49	-1.69E-46
MS.gene051613	MS.gene49643	0.825432	4.70E-54	-1.69E-46
MS.gene052447	MS.gene49643	0.87116	8.45E-67	-1.69E-46
MS.gene052582	MS.gene49643	0.800484	1.41E-48	-1.69E-46
MS.gene052584	MS.gene49643	0.806603	7.59E-50	-1.69E-46
MS.gene053082	MS.gene49643	0.834838	2.38E-56	-1.69E-46
MS.gene05329	MS.gene49643	0.821736	3.45E-53	-1.69E-46
MS.gene053396	MS.gene49643	0.827158	1.83E-54	-1.69E-46

Showing 1 to 10 of 21 entries

Previous1 2 3Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49643.t1	MTR_5g037340	73.267	101	27	0	1	101	102	202	3.66e-46	149
MS.gene49643.t1	MTR_5g037343	79.775	89	18	0	1	89	529	617	6.95e-43	149

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 42 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAGTTCAACGACAGGATTG+AGG	0.645379	5.1:+28085701	None:intergenic
ACCCTCATATCCTCGGCTTG+AGG	0.590014	5.1:-28083529	MS.gene49643:CDS
ACCTGATTTCCACCAGCATA+GGG	0.512422	5.1:+28083401	None:intergenic
ACTGTATGAAGTGCTTCCTG+TGG	0.670228	5.1:-28085683	MS.gene49643:CDS
ACTTCATACAGTTCAACGAC+AGG	0.558306	5.1:+28085694	None:intergenic
AGTCGTTGTGGAGCCAATTG+TGG	0.591579	5.1:-28083143	MS.gene49643:CDS
ATGAAGTGCTTCCTGTGGCT+GGG	0.480434	5.1:-28085678	MS.gene49643:CDS
ATGGTTCATCCCTCAAGCCG+AGG	0.651856	5.1:+28083519	None:intergenic
ATTAATTGAACTACGCAATT+TGG	0.223275	5.1:+28083487	None:intergenic
ATTCCACCTCCCTATGCTGG+TGG	0.582814	5.1:-28083410	MS.gene49643:CDS

Showing 1 to 10 of 42 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACTACCATGAAAGATAAAG+GGG	+	chr5.1:28083301-28083320	None:intergenic	30.0%
ATGTATTTACTTCCTAGTCT+AGG	+	chr5.1:28083564-28083583	None:intergenic	30.0%
GAAAATTAAAGCAGTCACAT+AGG	+	chr5.1:28084671-28084690	None:intergenic	30.0%
GCTAATAAATGAAAAAGCTG+AGG	+	chr5.1:28084161-28084180	None:intergenic	30.0%
GTTTATTAGCTATAGTGACA+AGG	-	chr5.1:28084265-28084284	MS.gene49643:intron	30.0%
TAAAAGGGTAAAATAAGCAC+AGG	+	chr5.1:28084317-28084336	None:intergenic	30.0%
TGTATTTACTTCCTAGTCTA+GGG	+	chr5.1:28083563-28083582	None:intergenic	30.0%
TTCAAGACTAAGATAATGTG+TGG	+	chr5.1:28084183-28084202	None:intergenic	30.0%
TTGATTACCTTGTGAGAATT+TGG	-	chr5.1:28083384-28083403	MS.gene49643:intron	30.0%
AGAGTTTGGAAACTGATGTA+AGG	-	chr5.1:28084740-28084759	MS.gene49643:intron	35.0%

Showing 1 to 10 of 153 entries

Previous1 2 3 4 5…16Next

Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	28083090	28085743	28083090	ID=MS.gene49643
chr5.1	mRNA	28083090	28085743	28083090	ID=MS.gene49643.t1;Parent=MS.gene49643
chr5.1	exon	28085637	28085743	28085637	ID=MS.gene49643.t1.exon1;Parent=MS.gene49643.t1
chr5.1	CDS	28085637	28085743	28085637	ID=cds.MS.gene49643.t1;Parent=MS.gene49643.t1
chr5.1	exon	28083403	28083640	28083403	ID=MS.gene49643.t1.exon2;Parent=MS.gene49643.t1
chr5.1	CDS	28083403	28083640	28083403	ID=cds.MS.gene49643.t1;Parent=MS.gene49643.t1
chr5.1	exon	28083090	28083167	28083090	ID=MS.gene49643.t1.exon3;Parent=MS.gene49643.t1
chr5.1	CDS	28083090	28083167	28083090	ID=cds.MS.gene49643.t1;Parent=MS.gene49643.t1

Gene Sequence

>MS.gene49643

ATGATGGTACATGTCGCAGACCTCAATCCTGTCGTTGAACTGTATGAAGTGCTTCCTGTGGCTGGGTTTCCTTACCCACCTTTGGCATATCGGCGCCGAAAACATGGGTATACATTATATTTCCTAATTTCACCTTTTATTTTTTCATCTATGATAAATGTACATTGATTTAGCTTTGAATTTTCATATGGAATTTTAACTTCATCCACCCCTTTATCTTTCATGGTAGTTATTAATTATGTATGCTATTGATTGTCTGGAATGTCATTTGTGACTGGTACATTATGAATGTTTTTGATTACCTTGTGAGAATTTGGCGGATATAGTATATTTTTAAGGTTATAAATTTTGTTATATGATATGGTTTTTGACTTTATAGAATTTGTATTTTCTGATTGAATATTTGTGTGTCTATAATGAGATCTCACTATTGTATTTATACTAGTGTTACAATAAATACATTGAATAACCCCTAGACTAGGAAGTAAATACATTGAATAACCACTAGACTAGGAAGTTCTGTAATCCTAGGAATATATAAAATCAGAAGCTGTTACACTTAGAGGGAATATCTACAGTCTATAATTCTAACAGTCTTGATTTCTCGTGTGTTCTTCTCATTTATTTTATACTATTACATGTTCTCGAAACTCACCCCTTCGTTGGCACCATCATTTACAGAAAAACTCGAACATTTTAGGTACTTGTTGTGAGCATATACATTACATACTATTATAGAGCCAACATTATGCTATAAATCAACTTGGTGTGTTACTAGCAAAACTGTCTTAACTTTGAGAGCTATTCCTGCAACAAAAATAGAGAATCAGTTGTGTTTTTTATTAGAAATTTAAAACTGGCAATTTATTTTTAAAACTGAGAAACATTATATCATGAGACAAAGCCTAATGAACCAAATTTCGAAACACGAAGCTAATTCAGTCGCAAACACTTTTTTGACAAGCTTGAATGTGTTATGTTGTGTTGAGGAGAATGACATTATAAGTATACGACTTTACAAACCTTTTGTATTATCCTTCCTTGCTTGCTTTCTCTGCATGCTCTCAACCTCAGCTTTTTCATTTATTAGCCACACATTATCTTAGTCTTGAATCTGGTTTTTGGTGTGAAATTTTACCCACTCTAATTGTTTTTTATGTCGAAGGTGTTACTTAGTTTATTAGCTATAGTGACAAGGTTTCGAATCATGGCTGTATCATATTACCTGTGCTTATTTTACCCTTTTAATGAACATTTATAAGATTATTAACTGATAGTCTTGAATCTGGTTTTTGGAGTGAAATTTTACCCACTCTAATTGTTTTTTATGTCGAAGGTGTTACTTAGTTTATTAGCTATAGTGACAAGGTTTCGAATCATGGCTGTATCATATTACCTGTGCTTATTTTACCCTTTTAATGAACATTTATAAGATTATTAACTCATAGTATGTCTAGATTGCAACTTGTCTAATCTGAAGATGAAGCATGCACAAATGAGACAGTAGAAAGTAGTGTTTAAGAAAACTTTAAAAAAATTTAGCTGGTTCACGTGCATTACATAATGCCTCATTCTGCACCTATGTGACTGCTTTAATTTTCAAAACTAAATTTTGGAAACTGGGTACTGTTGCCATCCTTAGTGAGGTGTAGAGTTTGGAAACTGATGTAAGGCAGCCTGGCCTCAACTTTATCCTAAGTGCAGTCTAGAGCCCCAATTTTTGTGCTTTTTAGGTCTGACACTATTTTTTTGCCCAACATGCAGTCTTGGTGTTTGGTGTCTTAGATGTAATTCGGCCTCGATATTTGTTTCACATGTGACATGCCTTGCTGGTTTTCTCAATGTTATTTTATTTTCTATTCTCTTTCAAAGATTATACTTATAACAAGCTTAAAGCTTAGTAAGCTTTGGCTTGAGGTGGGGTATTAGATGATATGAAAATATTTTGATATTACGTTAGAGTATGTTGATTATCTTTGGGTAAGTTCTGTTCACTTCATTTAAATCCCTATAACTTCAACGCTAGTAACTGATATTTGAACATTAATCTTATGAAAGATTCGAATTCATCAATGTCCTAAGTTGTTTTTGCTTTTATGTTAGGGCTTTTGCTGATGTTGAGTCTCTGGCTTTATTTACTGCATTCCATCGGAACGGTAATGTTCGAGAAGCCGAGACTCTTCGAGATATGTACCCTCATATCCTCGGCTTGAGGGATGAACCATCTTTGAATGCCAAATTGCGTAGTTCAATTAATTCAGCTGAACGTTATGATATCGCATTACTCACCCTTGTCCCGCCAGTTGTTGTGATTCCACCTCCCTATGCTGGTGGAAATCAGGTAAAGGTTTTGTCACAGTTTTTGATAAGTTTTGTCATGGTGCCTTTTTTTACATATTCTGTTTTTGAATATAGGCTGGACATTGATGTGAATGCTGGGGCATCATTCATTAGGTAATGTATCTACCTTTTTATGTTTTAATATAACTAATGTGAGACTTTTTCATAAACATTTGAATTGCTGGATATTTATTTGTGGAGCCAAGAATGAATATTAGTGTGAATTTCTTTTTCAGGCAGTCGTTGTGGAGCCAATTGTGGTTGAAGATCTGGATTCTGGAAAGATAATTACAATGAGTGTTCCCAACATTTGA

Protein sequence

>MS.gene49643.t1

MMVHVADLNPVVELYEVLPVAGFPYPPLAYRRRKHGAFADVESLALFTAFHRNGNVREAETLRDMYPHILGLRDEPSLNAKLRSSINSAERYDIALLTLVPPVVVIPPPYAGGNQAVVVEPIVVEDLDSGKIITMSVPNI