Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49643.t1 | RHN55221.1 | 51.8 | 137 | 18 | 1 | 1 | 89 | 1 | 137 | 1.20E-24 | 122.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49643.t1 | A0A396HRT1 | 51.8 | 137 | 18 | 1 | 1 | 89 | 1 | 137 | 8.7e-25 | 122.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene49643 | 0.814993 | 1.16E-51 | -1.69E-46 |
| MS.gene049977 | MS.gene49643 | 0.810229 | 1.28E-50 | -1.69E-46 |
| MS.gene051594 | MS.gene49643 | 0.801732 | 7.84E-49 | -1.69E-46 |
| MS.gene051613 | MS.gene49643 | 0.825432 | 4.70E-54 | -1.69E-46 |
| MS.gene052447 | MS.gene49643 | 0.87116 | 8.45E-67 | -1.69E-46 |
| MS.gene052582 | MS.gene49643 | 0.800484 | 1.41E-48 | -1.69E-46 |
| MS.gene052584 | MS.gene49643 | 0.806603 | 7.59E-50 | -1.69E-46 |
| MS.gene053082 | MS.gene49643 | 0.834838 | 2.38E-56 | -1.69E-46 |
| MS.gene05329 | MS.gene49643 | 0.821736 | 3.45E-53 | -1.69E-46 |
| MS.gene053396 | MS.gene49643 | 0.827158 | 1.83E-54 | -1.69E-46 |
| MS.gene05415 | MS.gene49643 | 0.821531 | 3.84E-53 | -1.69E-46 |
| MS.gene05423 | MS.gene49643 | 0.813007 | 3.18E-51 | -1.69E-46 |
| MS.gene05531 | MS.gene49643 | 0.813009 | 3.18E-51 | -1.69E-46 |
| MS.gene055952 | MS.gene49643 | 0.850894 | 1.26E-60 | -1.69E-46 |
| MS.gene056082 | MS.gene49643 | 0.802787 | 4.75E-49 | -1.69E-46 |
| MS.gene056272 | MS.gene49643 | 0.835855 | 1.32E-56 | -1.69E-46 |
| MS.gene056776 | MS.gene49643 | 0.818227 | 2.19E-52 | -1.69E-46 |
| MS.gene059458 | MS.gene49643 | 0.82406 | 9.91E-54 | -1.69E-46 |
| MS.gene060521 | MS.gene49643 | 0.812885 | 3.39E-51 | -1.69E-46 |
| MS.gene060634 | MS.gene49643 | -0.826015 | 3.42E-54 | -1.69E-46 |
| MS.gene060654 | MS.gene49643 | 0.849153 | 3.88E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49643.t1 | MTR_5g037340 | 73.267 | 101 | 27 | 0 | 1 | 101 | 102 | 202 | 3.66e-46 | 149 |
| MS.gene49643.t1 | MTR_5g037343 | 79.775 | 89 | 18 | 0 | 1 | 89 | 529 | 617 | 6.95e-43 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAATTGAACTACGCAATT+TGG | 0.223275 | 5.1:+28083487 | None:intergenic |
| CTTACCCACCTTTGGCATAT+CGG | 0.321319 | 5.1:-28085651 | MS.gene49643:CDS |
| TGGGTTTCCTTACCCACCTT+TGG | 0.326370 | 5.1:-28085659 | MS.gene49643:CDS |
| TATGAAGTGCTTCCTGTGGC+TGG | 0.328123 | 5.1:-28085679 | MS.gene49643:CDS |
| GTGGTTGAAGATCTGGATTC+TGG | 0.328300 | 5.1:-28083124 | MS.gene49643:CDS |
| CGCAATTTGGCATTCAAAGA+TGG | 0.377089 | 5.1:+28083500 | None:intergenic |
| TCCCTATGCTGGTGGAAATC+AGG | 0.384167 | 5.1:-28083402 | MS.gene49643:intron |
| GCCAATTGTGGTTGAAGATC+TGG | 0.391352 | 5.1:-28083131 | MS.gene49643:CDS |
| CCCTCATATCCTCGGCTTGA+GGG | 0.402433 | 5.1:-28083528 | MS.gene49643:CDS |
| TCCCTCAAGCCGAGGATATG+AGG | 0.423860 | 5.1:+28083527 | None:intergenic |
| TCCAGATCTTCAACCACAAT+TGG | 0.447233 | 5.1:+28083130 | None:intergenic |
| GTGATTCCACCTCCCTATGC+TGG | 0.466593 | 5.1:-28083413 | MS.gene49643:CDS |
| GGAGGTGGAATCACAACAAC+TGG | 0.470233 | 5.1:+28083422 | None:intergenic |
| ATGAAGTGCTTCCTGTGGCT+GGG | 0.480434 | 5.1:-28085678 | MS.gene49643:CDS |
| GCATATCGGCGCCGAAAACA+TGG | 0.482274 | 5.1:-28085637 | MS.gene49643:CDS |
| CGATATGCCAAAGGTGGGTA+AGG | 0.496175 | 5.1:+28085652 | None:intergenic |
| ACCTGATTTCCACCAGCATA+GGG | 0.512422 | 5.1:+28083401 | None:intergenic |
| TCACAACAACTGGCGGGACA+AGG | 0.532243 | 5.1:+28083432 | None:intergenic |
| CCCTCAAGCCGAGGATATGA+GGG | 0.545606 | 5.1:+28083528 | None:intergenic |
| TACCTGATTTCCACCAGCAT+AGG | 0.545749 | 5.1:+28083400 | None:intergenic |
| CGGCGCCGATATGCCAAAGG+TGG | 0.556790 | 5.1:+28085646 | None:intergenic |
| ACTTCATACAGTTCAACGAC+AGG | 0.558306 | 5.1:+28085694 | None:intergenic |
| CTCGAACATTACCGTTCCGA+TGG | 0.560247 | 5.1:+28083576 | None:intergenic |
| GTACATATCTCGAAGAGTCT+CGG | 0.564352 | 5.1:+28083550 | None:intergenic |
| GGGTAAGGAAACCCAGCCAC+AGG | 0.566397 | 5.1:+28085667 | None:intergenic |
| CTTTATTTACTGCATTCCAT+CGG | 0.567753 | 5.1:-28083592 | MS.gene49643:CDS |
| ATTCCACCTCCCTATGCTGG+TGG | 0.582814 | 5.1:-28083410 | MS.gene49643:CDS |
| CACAACAACTGGCGGGACAA+GGG | 0.584662 | 5.1:+28083433 | None:intergenic |
| ACCCTCATATCCTCGGCTTG+AGG | 0.590014 | 5.1:-28083529 | MS.gene49643:CDS |
| TTTCCACCAGCATAGGGAGG+TGG | 0.591423 | 5.1:+28083407 | None:intergenic |
| AGTCGTTGTGGAGCCAATTG+TGG | 0.591579 | 5.1:-28083143 | MS.gene49643:CDS |
| GATATGTACCCTCATATCCT+CGG | 0.598019 | 5.1:-28083536 | MS.gene49643:CDS |
| TTTACTGCATTCCATCGGAA+CGG | 0.598977 | 5.1:-28083587 | MS.gene49643:CDS |
| GTGGAATCACAACAACTGGC+GGG | 0.613434 | 5.1:+28083426 | None:intergenic |
| GGTGGAATCACAACAACTGG+CGG | 0.626056 | 5.1:+28083425 | None:intergenic |
| CATATCGGCGCCGAAAACAT+GGG | 0.628337 | 5.1:-28085636 | MS.gene49643:intron |
| TTTCGGCGCCGATATGCCAA+AGG | 0.640609 | 5.1:+28085643 | None:intergenic |
| GGCGCCGATATGCCAAAGGT+GGG | 0.645162 | 5.1:+28085647 | None:intergenic |
| ACAGTTCAACGACAGGATTG+AGG | 0.645379 | 5.1:+28085701 | None:intergenic |
| ATGGTTCATCCCTCAAGCCG+AGG | 0.651856 | 5.1:+28083519 | None:intergenic |
| ACTGTATGAAGTGCTTCCTG+TGG | 0.670228 | 5.1:-28085683 | MS.gene49643:CDS |
| TGATTTCCACCAGCATAGGG+AGG | 0.692781 | 5.1:+28083404 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTATATTAAAACATAAAA+AGG | + | chr5.1:28085559-28085578 | None:intergenic | 10.0% |
| !!! | ATAAATTTTGTTATATGATA+TGG | - | chr5.1:28083431-28083450 | MS.gene49643:CDS | 10.0% |
| !!! | TAATTTTCAAAACTAAATTT+TGG | - | chr5.1:28084683-28084702 | MS.gene49643:intron | 10.0% |
| !!! | TTTTATTAGAAATTTAAAAC+TGG | - | chr5.1:28083927-28083946 | MS.gene49643:intron | 10.0% |
| !! | AAAAAATAAAAGGTGAAATT+AGG | + | chr5.1:28083215-28083234 | None:intergenic | 15.0% |
| !! | AAAACAGAATATGTAAAAAA+AGG | + | chr5.1:28085476-28085495 | None:intergenic | 15.0% |
| !! | ATCATAGATGAAAAAATAAA+AGG | + | chr5.1:28083225-28083244 | None:intergenic | 15.0% |
| !! | CTTATAAATGTTCATTAAAA+GGG | + | chr5.1:28084332-28084351 | None:intergenic | 15.0% |
| !! | TCTTATAAATGTTCATTAAA+AGG | + | chr5.1:28084333-28084352 | None:intergenic | 15.0% |
| !!! | AAACTTTAAAAAAATTTAGC+TGG | - | chr5.1:28084613-28084632 | MS.gene49643:intron | 15.0% |
| !! | ACATAAAAAACAATTAGAGT+GGG | + | chr5.1:28084230-28084249 | None:intergenic | 20.0% |
| !!! | AAAACTAAATTTTGGAAACT+GGG | - | chr5.1:28084691-28084710 | MS.gene49643:intron | 20.0% |
| !!! | CATATTCTGTTTTTGAATAT+AGG | - | chr5.1:28085483-28085502 | MS.gene49643:intron | 20.0% |
| !!! | TTCTGATTTTATATATTCCT+AGG | + | chr5.1:28083619-28083638 | None:intergenic | 20.0% |
| !!! | TTGTTTTTGCTTTTATGTTA+GGG | - | chr5.1:28085172-28085191 | MS.gene49643:intron | 20.0% |
| !!! | TTTAGCTTTGAATTTTCATA+TGG | - | chr5.1:28083258-28083277 | MS.gene49643:intron | 20.0% |
| ! | AATTGCTGGATATTTATTTG+TGG | - | chr5.1:28085606-28085625 | MS.gene49643:intron | 25.0% |
| ! | ATAACTACCATGAAAGATAA+AGG | + | chr5.1:28083303-28083322 | None:intergenic | 25.0% |
| ! | ATTAATTGAACTACGCAATT+TGG | + | chr5.1:28085327-28085346 | None:intergenic | 25.0% |
| ! | CATAAAAGCAAAAACAACTT+AGG | + | chr5.1:28085169-28085188 | None:intergenic | 25.0% |
| ! | CATTATGCTATAAATCAACT+TGG | - | chr5.1:28083834-28083853 | MS.gene49643:intron | 25.0% |
| ! | GACATAAAAAACAATTAGAG+TGG | + | chr5.1:28084231-28084250 | None:intergenic | 25.0% |
| ! | TAACTACCATGAAAGATAAA+GGG | + | chr5.1:28083302-28083321 | None:intergenic | 25.0% |
| ! | TTCACACTAATATTCATTCT+TGG | + | chr5.1:28085634-28085653 | None:intergenic | 25.0% |
| ! | TTCATAAACATTTGAATTGC+TGG | - | chr5.1:28085592-28085611 | MS.gene49643:intron | 25.0% |
| !! | ACCTAAAAAGCACAAAAATT+GGG | + | chr5.1:28084805-28084824 | None:intergenic | 25.0% |
| !! | AGAGTATGTTGATTATCTTT+GGG | - | chr5.1:28085048-28085067 | MS.gene49643:intron | 25.0% |
| !! | ATAATGTATACCCATGTTTT+CGG | + | chr5.1:28083188-28083207 | None:intergenic | 25.0% |
| !! | GTTGATTTATAGCATAATGT+TGG | + | chr5.1:28083833-28083852 | None:intergenic | 25.0% |
| !! | TAGAGTATGTTGATTATCTT+TGG | - | chr5.1:28085047-28085066 | MS.gene49643:intron | 25.0% |
| !! | TTAGTGTGAATTTCTTTTTC+AGG | - | chr5.1:28085644-28085663 | MS.gene49643:CDS | 25.0% |
| !!! | CAAAACTAAATTTTGGAAAC+TGG | - | chr5.1:28084690-28084709 | MS.gene49643:intron | 25.0% |
| !!! | CTAATTGTTTTTTATGTCGA+AGG | - | chr5.1:28084233-28084252 | MS.gene49643:intron | 25.0% |
| !!! | GCGGATATAGTATATTTTTA+AGG | - | chr5.1:28083406-28083425 | MS.gene49643:CDS | 25.0% |
| !!! | GTTGTTTTTGCTTTTATGTT+AGG | - | chr5.1:28085171-28085190 | MS.gene49643:intron | 25.0% |
| !!! | GTTTTTGATAAGTTTTGTCA+TGG | - | chr5.1:28085448-28085467 | MS.gene49643:intron | 25.0% |
| AACTACCATGAAAGATAAAG+GGG | + | chr5.1:28083301-28083320 | None:intergenic | 30.0% | |
| ATGTATTTACTTCCTAGTCT+AGG | + | chr5.1:28083564-28083583 | None:intergenic | 30.0% | |
| GAAAATTAAAGCAGTCACAT+AGG | + | chr5.1:28084671-28084690 | None:intergenic | 30.0% | |
| GCTAATAAATGAAAAAGCTG+AGG | + | chr5.1:28084161-28084180 | None:intergenic | 30.0% | |
| GTTTATTAGCTATAGTGACA+AGG | - | chr5.1:28084265-28084284 | MS.gene49643:intron | 30.0% | |
| TAAAAGGGTAAAATAAGCAC+AGG | + | chr5.1:28084317-28084336 | None:intergenic | 30.0% | |
| TGTATTTACTTCCTAGTCTA+GGG | + | chr5.1:28083563-28083582 | None:intergenic | 30.0% | |
| TTCAAGACTAAGATAATGTG+TGG | + | chr5.1:28084183-28084202 | None:intergenic | 30.0% | |
| TTGATTACCTTGTGAGAATT+TGG | - | chr5.1:28083384-28083403 | MS.gene49643:intron | 30.0% | |
| ! | CAGAAAAACTCGAACATTTT+AGG | - | chr5.1:28083768-28083787 | MS.gene49643:intron | 30.0% |
| ! | CCTAAAAAGCACAAAAATTG+GGG | + | chr5.1:28084804-28084823 | None:intergenic | 30.0% |
| ! | CTTTATTTACTGCATTCCAT+CGG | - | chr5.1:28085219-28085238 | MS.gene49643:intron | 30.0% |
| ! | GACCTAAAAAGCACAAAAAT+TGG | + | chr5.1:28084806-28084825 | None:intergenic | 30.0% |
| ! | GTTTCGAAATTTGGTTCATT+AGG | + | chr5.1:28083997-28084016 | None:intergenic | 30.0% |
| ! | TATGTATGCTATTGATTGTC+TGG | - | chr5.1:28083327-28083346 | MS.gene49643:intron | 30.0% |
| ! | TCGAGTTTTTCTGTAAATGA+TGG | + | chr5.1:28083761-28083780 | None:intergenic | 30.0% |
| ! | TTAACTGATAGTCTTGAATC+TGG | - | chr5.1:28084356-28084375 | MS.gene49643:intron | 30.0% |
| ! | TTACTAGCGTTGAAGTTATA+GGG | + | chr5.1:28085099-28085118 | None:intergenic | 30.0% |
| ! | TTGGTGTCTTAGATGTAATT+CGG | - | chr5.1:28084863-28084882 | MS.gene49643:intron | 30.0% |
| !! | CATTATCTTAGTCTTGAATC+TGG | - | chr5.1:28084185-28084204 | MS.gene49643:intron | 30.0% |
| !!! | ATAGTCTTGAATCTGGTTTT+TGG | - | chr5.1:28084363-28084382 | MS.gene49643:intron | 30.0% |
| !!! | TGATTCTCTATTTTTGTTGC+AGG | + | chr5.1:28083899-28083918 | None:intergenic | 30.0% |
| !!! | TTAGTCTTGAATCTGGTTTT+TGG | - | chr5.1:28084192-28084211 | MS.gene49643:intron | 30.0% |
| !!! | TTCTGTTTTTGAATATAGGC+TGG | - | chr5.1:28085487-28085506 | MS.gene49643:intron | 30.0% |
| AGAGTTTGGAAACTGATGTA+AGG | - | chr5.1:28084740-28084759 | MS.gene49643:intron | 35.0% | |
| ATTACCTTGTGAGAATTTGG+CGG | - | chr5.1:28083387-28083406 | MS.gene49643:intron | 35.0% | |
| CACATGTGAAACAAATATCG+AGG | + | chr5.1:28084889-28084908 | None:intergenic | 35.0% | |
| CATTGAATAACCACTAGACT+AGG | - | chr5.1:28083581-28083600 | MS.gene49643:CDS | 35.0% | |
| GAATGTGTTATGTTGTGTTG+AGG | - | chr5.1:28084057-28084076 | MS.gene49643:intron | 35.0% | |
| GCAAGGAAGGATAATACAAA+AGG | + | chr5.1:28084115-28084134 | None:intergenic | 35.0% | |
| GCTTAAAGCTTAGTAAGCTT+TGG | - | chr5.1:28084978-28084997 | MS.gene49643:intron | 35.0% | |
| GTATTTACTTCCTAGTCTAG+GGG | + | chr5.1:28083562-28083581 | None:intergenic | 35.0% | |
| TAACATTGAGAAAACCAGCA+AGG | + | chr5.1:28084917-28084936 | None:intergenic | 35.0% | |
| TAGCTTCGTGTTTCGAAATT+TGG | + | chr5.1:28084006-28084025 | None:intergenic | 35.0% | |
| ! | GTTACTAGCGTTGAAGTTAT+AGG | + | chr5.1:28085100-28085119 | None:intergenic | 35.0% |
| !! | CCCCAATTTTTGTGCTTTTT+AGG | - | chr5.1:28084801-28084820 | MS.gene49643:intron | 35.0% |
| AAACACCAAGACTGCATGTT+GGG | + | chr5.1:28084845-28084864 | None:intergenic | 40.0% | |
| ACTTCATACAGTTCAACGAC+AGG | + | chr5.1:28083120-28083139 | None:intergenic | 40.0% | |
| AGTGACAAGGTTTCGAATCA+TGG | - | chr5.1:28084278-28084297 | MS.gene49643:intron | 40.0% | |
| ATATCCGCCAAATTCTCACA+AGG | + | chr5.1:28083394-28083413 | None:intergenic | 40.0% | |
| ATCCACCCCTTTATCTTTCA+TGG | - | chr5.1:28083293-28083312 | MS.gene49643:intron | 40.0% | |
| CAGAAGCTGTTACACTTAGA+GGG | - | chr5.1:28083634-28083653 | MS.gene49643:intron | 40.0% | |
| CATTGAATAACCCCTAGACT+AGG | - | chr5.1:28083549-28083568 | MS.gene49643:CDS | 40.0% | |
| CGCAATTTGGCATTCAAAGA+TGG | + | chr5.1:28085314-28085333 | None:intergenic | 40.0% | |
| CTAGGAAGTTCTGTAATCCT+AGG | - | chr5.1:28083599-28083618 | MS.gene49643:CDS | 40.0% | |
| CTGCACTTAGGATAAAGTTG+AGG | + | chr5.1:28084774-28084793 | None:intergenic | 40.0% | |
| GATATGTACCCTCATATCCT+CGG | - | chr5.1:28085275-28085294 | MS.gene49643:intron | 40.0% | |
| GTACATATCTCGAAGAGTCT+CGG | + | chr5.1:28085264-28085283 | None:intergenic | 40.0% | |
| TACAGAACTTCCTAGTCTAG+TGG | + | chr5.1:28083594-28083613 | None:intergenic | 40.0% | |
| TACCATGAAAGATAAAGGGG+TGG | + | chr5.1:28083298-28083317 | None:intergenic | 40.0% | |
| TCAGAAGCTGTTACACTTAG+AGG | - | chr5.1:28083633-28083652 | MS.gene49643:intron | 40.0% | |
| TCCAGATCTTCAACCACAAT+TGG | + | chr5.1:28085684-28085703 | None:intergenic | 40.0% | |
| TGGACATTGATGTGAATGCT+GGG | - | chr5.1:28085507-28085526 | MS.gene49643:intron | 40.0% | |
| TTTACTGCATTCCATCGGAA+CGG | - | chr5.1:28085224-28085243 | MS.gene49643:intron | 40.0% | |
| ! | TAAATGATGGTGCCAACGAA+GGG | + | chr5.1:28083748-28083767 | None:intergenic | 40.0% |
| ! | TCTGGAATGTCATTTGTGAC+TGG | - | chr5.1:28083345-28083364 | MS.gene49643:intron | 40.0% |
| ! | TTTTGCTGATGTTGAGTCTC+TGG | - | chr5.1:28085196-28085215 | MS.gene49643:intron | 40.0% |
| ACAGTTCAACGACAGGATTG+AGG | + | chr5.1:28083113-28083132 | None:intergenic | 45.0% | |
| ACCTGATTTCCACCAGCATA+GGG | + | chr5.1:28085413-28085432 | None:intergenic | 45.0% | |
| ACTCTACACCTCACTAAGGA+TGG | + | chr5.1:28084725-28084744 | None:intergenic | 45.0% | |
| AGTCACATAGGTGCAGAATG+AGG | + | chr5.1:28084659-28084678 | None:intergenic | 45.0% | |
| CAAACACCAAGACTGCATGT+TGG | + | chr5.1:28084846-28084865 | None:intergenic | 45.0% | |
| CCAAACTCTACACCTCACTA+AGG | + | chr5.1:28084729-28084748 | None:intergenic | 45.0% | |
| CCTTAGTGAGGTGTAGAGTT+TGG | - | chr5.1:28084726-28084745 | MS.gene49643:intron | 45.0% | |
| CTGGACATTGATGTGAATGC+TGG | - | chr5.1:28085506-28085525 | MS.gene49643:intron | 45.0% | |
| CTTACCCACCTTTGGCATAT+CGG | - | chr5.1:28083160-28083179 | MS.gene49643:intron | 45.0% | |
| CTTAGGATAAAGTTGAGGCC+AGG | + | chr5.1:28084769-28084788 | None:intergenic | 45.0% | |
| GCCAATTGTGGTTGAAGATC+TGG | - | chr5.1:28085680-28085699 | MS.gene49643:CDS | 45.0% | |
| GGACATTGATGTGAATGCTG+GGG | - | chr5.1:28085508-28085527 | MS.gene49643:intron | 45.0% | |
| GTGGTTGAAGATCTGGATTC+TGG | - | chr5.1:28085687-28085706 | MS.gene49643:CDS | 45.0% | |
| TACCTGATTTCCACCAGCAT+AGG | + | chr5.1:28085414-28085433 | None:intergenic | 45.0% | |
| TACTGTTGCCATCCTTAGTG+AGG | - | chr5.1:28084714-28084733 | MS.gene49643:intron | 45.0% | |
| TGCTGGTGGAAATCAGGTAA+AGG | - | chr5.1:28085415-28085434 | MS.gene49643:intron | 45.0% | |
| ! | AAATGATGGTGCCAACGAAG+GGG | + | chr5.1:28083747-28083766 | None:intergenic | 45.0% |
| ! | ACTGTATGAAGTGCTTCCTG+TGG | - | chr5.1:28083128-28083147 | MS.gene49643:CDS | 45.0% |
| ! | ATGCTGGGGCATCATTCATT+AGG | - | chr5.1:28085522-28085541 | MS.gene49643:intron | 45.0% |
| ! | GTAAATGATGGTGCCAACGA+AGG | + | chr5.1:28083749-28083768 | None:intergenic | 45.0% |
| ! | TTTTGCCCAACATGCAGTCT+TGG | - | chr5.1:28084837-28084856 | MS.gene49643:intron | 45.0% |
| !! | AGTAAGCTTTGGCTTGAGGT+GGG | - | chr5.1:28084989-28085008 | MS.gene49643:intron | 45.0% |
| !! | CAACATGCAGTCTTGGTGTT+TGG | - | chr5.1:28084844-28084863 | MS.gene49643:intron | 45.0% |
| !! | GCTTAGTAAGCTTTGGCTTG+AGG | - | chr5.1:28084985-28085004 | MS.gene49643:intron | 45.0% |
| !! | TAGTAAGCTTTGGCTTGAGG+TGG | - | chr5.1:28084988-28085007 | MS.gene49643:intron | 45.0% |
| !!! | TCTTTTTCAGGCAGTCGTTG+TGG | - | chr5.1:28085656-28085675 | MS.gene49643:CDS | 45.0% |
| AGTCGTTGTGGAGCCAATTG+TGG | - | chr5.1:28085668-28085687 | MS.gene49643:CDS | 50.0% | |
| CGATATGCCAAAGGTGGGTA+AGG | + | chr5.1:28083162-28083181 | None:intergenic | 50.0% | |
| CTCGAACATTACCGTTCCGA+TGG | + | chr5.1:28085238-28085257 | None:intergenic | 50.0% | |
| GAAACTGATGTAAGGCAGCC+TGG | - | chr5.1:28084748-28084767 | MS.gene49643:intron | 50.0% | |
| GCAGAGAAAGCAAGCAAGGA+AGG | + | chr5.1:28084128-28084147 | None:intergenic | 50.0% | |
| GCATGCAGAGAAAGCAAGCA+AGG | + | chr5.1:28084132-28084151 | None:intergenic | 50.0% | |
| GGAGGTGGAATCACAACAAC+TGG | + | chr5.1:28085392-28085411 | None:intergenic | 50.0% | |
| GGTGGAATCACAACAACTGG+CGG | + | chr5.1:28085389-28085408 | None:intergenic | 50.0% | |
| GTGGAATCACAACAACTGGC+GGG | + | chr5.1:28085388-28085407 | None:intergenic | 50.0% | |
| TCACATGTGACATGCCTTGC+TGG | - | chr5.1:28084900-28084919 | MS.gene49643:intron | 50.0% | |
| TCCCTATGCTGGTGGAAATC+AGG | - | chr5.1:28085409-28085428 | MS.gene49643:intron | 50.0% | |
| TGATTTCCACCAGCATAGGG+AGG | + | chr5.1:28085410-28085429 | None:intergenic | 50.0% | |
| TGGGTTTCCTTACCCACCTT+TGG | - | chr5.1:28083152-28083171 | MS.gene49643:intron | 50.0% | |
| ! | ATGAAGTGCTTCCTGTGGCT+GGG | - | chr5.1:28083133-28083152 | MS.gene49643:CDS | 50.0% |
| ! | CATATCGGCGCCGAAAACAT+GGG | - | chr5.1:28083175-28083194 | MS.gene49643:intron | 50.0% |
| ! | TATGAAGTGCTTCCTGTGGC+TGG | - | chr5.1:28083132-28083151 | MS.gene49643:CDS | 50.0% |
| !! | GTAAGCTTTGGCTTGAGGTG+GGG | - | chr5.1:28084990-28085009 | MS.gene49643:intron | 50.0% |
| ATGGTTCATCCCTCAAGCCG+AGG | + | chr5.1:28085295-28085314 | None:intergenic | 55.0% | |
| ATTCCACCTCCCTATGCTGG+TGG | - | chr5.1:28085401-28085420 | MS.gene49643:intron | 55.0% | |
| CACAACAACTGGCGGGACAA+GGG | + | chr5.1:28085381-28085400 | None:intergenic | 55.0% | |
| CCCTCAAGCCGAGGATATGA+GGG | + | chr5.1:28085286-28085305 | None:intergenic | 55.0% | |
| CTCGAAACTCACCCCTTCGT+TGG | - | chr5.1:28083733-28083752 | MS.gene49643:intron | 55.0% | |
| GTGATTCCACCTCCCTATGC+TGG | - | chr5.1:28085398-28085417 | MS.gene49643:intron | 55.0% | |
| TCACAACAACTGGCGGGACA+AGG | + | chr5.1:28085382-28085401 | None:intergenic | 55.0% | |
| TCCCTCAAGCCGAGGATATG+AGG | + | chr5.1:28085287-28085306 | None:intergenic | 55.0% | |
| TTTCCACCAGCATAGGGAGG+TGG | + | chr5.1:28085407-28085426 | None:intergenic | 55.0% | |
| ! | ACCCTCATATCCTCGGCTTG+AGG | - | chr5.1:28085282-28085301 | MS.gene49643:intron | 55.0% |
| ! | CCCTCATATCCTCGGCTTGA+GGG | - | chr5.1:28085283-28085302 | MS.gene49643:intron | 55.0% |
| ! | GCATATCGGCGCCGAAAACA+TGG | - | chr5.1:28083174-28083193 | MS.gene49643:intron | 55.0% |
| !! | TGGGGCTCTAGACTGCACTT+AGG | + | chr5.1:28084786-28084805 | None:intergenic | 55.0% |
| !! | TTTCGGCGCCGATATGCCAA+AGG | + | chr5.1:28083171-28083190 | None:intergenic | 55.0% |
| GGGTAAGGAAACCCAGCCAC+AGG | + | chr5.1:28083147-28083166 | None:intergenic | 60.0% | |
| !! | GGCGCCGATATGCCAAAGGT+GGG | + | chr5.1:28083167-28083186 | None:intergenic | 60.0% |
| !! | CGGCGCCGATATGCCAAAGG+TGG | + | chr5.1:28083168-28083187 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 28083090 | 28085743 | 28083090 | ID=MS.gene49643 |
| chr5.1 | mRNA | 28083090 | 28085743 | 28083090 | ID=MS.gene49643.t1;Parent=MS.gene49643 |
| chr5.1 | exon | 28085637 | 28085743 | 28085637 | ID=MS.gene49643.t1.exon1;Parent=MS.gene49643.t1 |
| chr5.1 | CDS | 28085637 | 28085743 | 28085637 | ID=cds.MS.gene49643.t1;Parent=MS.gene49643.t1 |
| chr5.1 | exon | 28083403 | 28083640 | 28083403 | ID=MS.gene49643.t1.exon2;Parent=MS.gene49643.t1 |
| chr5.1 | CDS | 28083403 | 28083640 | 28083403 | ID=cds.MS.gene49643.t1;Parent=MS.gene49643.t1 |
| chr5.1 | exon | 28083090 | 28083167 | 28083090 | ID=MS.gene49643.t1.exon3;Parent=MS.gene49643.t1 |
| chr5.1 | CDS | 28083090 | 28083167 | 28083090 | ID=cds.MS.gene49643.t1;Parent=MS.gene49643.t1 |
| Gene Sequence |
| Protein sequence |
