Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49659.t1 | AES96447.2 | 65 | 294 | 69 | 1 | 1 | 260 | 1 | 294 | 1.90E-31 | 146.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49659.t1 | G7K715 | 65.0 | 294 | 69 | 1 | 1 | 260 | 1 | 294 | 1.4e-31 | 146.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene49659 | 0.82038 | 7.07E-53 | -1.69E-46 |
| MS.gene049850 | MS.gene49659 | 0.818184 | 2.24E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene49659 | 0.816074 | 6.67E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene49659 | 0.813313 | 2.73E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene49659 | 0.80969 | 1.67E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene49659 | 0.804683 | 1.92E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene49659 | -0.828997 | 6.58E-55 | -1.69E-46 |
| MS.gene054467 | MS.gene49659 | 0.82542 | 4.73E-54 | -1.69E-46 |
| MS.gene054468 | MS.gene49659 | 0.814445 | 1.53E-51 | -1.69E-46 |
| MS.gene055586 | MS.gene49659 | 0.805321 | 1.41E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene49659 | 0.809297 | 2.03E-50 | -1.69E-46 |
| MS.gene05604 | MS.gene49659 | 0.803062 | 4.17E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene49659 | 0.804482 | 2.11E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene49659 | 0.822114 | 2.82E-53 | -1.69E-46 |
| MS.gene057915 | MS.gene49659 | 0.817968 | 2.50E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene49659 | 0.803696 | 3.08E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene49659 | 0.806602 | 7.60E-50 | -1.69E-46 |
| MS.gene060373 | MS.gene49659 | 0.80164 | 8.19E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49659.t1 | MTR_5g037260 | 84.694 | 294 | 11 | 1 | 1 | 260 | 1 | 294 | 1.31e-169 | 476 |
| MS.gene49659.t1 | MTR_5g037260 | 87.770 | 278 | 16 | 2 | 1 | 260 | 1 | 278 | 1.09e-167 | 467 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49659.t1 | AT1G10417 | 50.719 | 278 | 119 | 2 | 1 | 260 | 1 | 278 | 3.65e-79 | 241 |
| MS.gene49659.t1 | AT1G10417 | 42.812 | 320 | 123 | 3 | 1 | 260 | 1 | 320 | 5.44e-66 | 211 |
| MS.gene49659.t1 | AT1G10417 | 48.047 | 256 | 115 | 2 | 23 | 260 | 27 | 282 | 7.58e-66 | 207 |
| MS.gene49659.t1 | AT1G10417 | 42.812 | 320 | 123 | 3 | 1 | 260 | 1 | 320 | 1.31e-65 | 211 |
Find 37 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCATCTTACAGAGGTTTC+AGG | 0.250922 | 5.1:+27897914 | MS.gene49659:CDS |
| CTTTATCTTTGACAATGTTC+TGG | 0.282120 | 5.1:-27897202 | None:intergenic |
| TAACCGAAGTTCGAGATCTA+AGG | 0.283589 | 5.1:+27895255 | MS.gene49659:CDS |
| TAAAGAAGAGAGACAGAAAT+TGG | 0.305113 | 5.1:+27895882 | MS.gene49659:CDS |
| GAGACAGAAATTGGAGAGAA+AGG | 0.341865 | 5.1:+27895891 | MS.gene49659:CDS |
| ACAAGAACTGCAGGGTGAAT+TGG | 0.359919 | 5.1:+27895852 | MS.gene49659:CDS |
| CACAGACCTAAGAAACAAAC+TGG | 0.396922 | 5.1:+27897511 | MS.gene49659:CDS |
| GAATAAGCAGAAAGAGTTGA+AGG | 0.429608 | 5.1:+27896033 | MS.gene49659:CDS |
| AACTTGAAGCAAAGCTGGAC+GGG | 0.432828 | 5.1:+27897579 | MS.gene49659:CDS |
| CTCAGAACTTGAAGCAAAGC+TGG | 0.437179 | 5.1:+27897574 | MS.gene49659:CDS |
| GGAAAACCTGGATTAGAAGA+TGG | 0.461210 | 5.1:-27895386 | None:intergenic |
| CTCATCTTACAGAGGTTTCA+GGG | 0.465498 | 5.1:+27897915 | MS.gene49659:CDS |
| GTTCACTTGAAAACAAAGAT+AGG | 0.468522 | 5.1:+27897081 | MS.gene49659:CDS |
| TAGAAAGATACAAGAACTGC+AGG | 0.489287 | 5.1:+27895843 | MS.gene49659:CDS |
| TGAATAGCTTACTTCAGTCC+AGG | 0.493890 | 5.1:+27896062 | MS.gene49659:CDS |
| TACCCTTAGATCTCGAACTT+CGG | 0.494712 | 5.1:-27895258 | None:intergenic |
| ATTATTTGATTCTATAGAGA+AGG | 0.505158 | 5.1:+27897145 | MS.gene49659:CDS |
| ATATATCTTCTATCTGAGCT+TGG | 0.507322 | 5.1:-27897622 | None:intergenic |
| GTCAAAGATAAAGAAGAAGT+TGG | 0.527883 | 5.1:+27897212 | MS.gene49659:CDS |
| TTTGAGAATAGAAGCAGAAG+CGG | 0.540138 | 5.1:+27895803 | MS.gene49659:intron |
| ATTTGATTCTATAGAGAAGG+AGG | 0.540704 | 5.1:+27897148 | MS.gene49659:CDS |
| ACAACACCATCTTCTAATCC+AGG | 0.541306 | 5.1:+27895380 | MS.gene49659:CDS |
| GAACTTGAAGCAAAGCTGGA+CGG | 0.548691 | 5.1:+27897578 | MS.gene49659:CDS |
| ACTAATATGAATGAAGAGGT+AGG | 0.555647 | 5.1:+27897945 | MS.gene49659:CDS |
| GAATAGCTTACTTCAGTCCA+GGG | 0.560439 | 5.1:+27896063 | MS.gene49659:CDS |
| AACCGAAGTTCGAGATCTAA+GGG | 0.565135 | 5.1:+27895256 | MS.gene49659:CDS |
| AATAAGCAGAAAGAGTTGAA+GGG | 0.576372 | 5.1:+27896034 | MS.gene49659:CDS |
| TAGAAGATGGTGTTGTTCAG+TGG | 0.585006 | 5.1:-27895373 | None:intergenic |
| ACTTGAAGCAAAGCTGGACG+GGG | 0.599974 | 5.1:+27897580 | MS.gene49659:CDS |
| ATAGAAGCAGAAGCGGAATG+AGG | 0.609486 | 5.1:+27895810 | MS.gene49659:intron |
| GAGAATTTATCTTCTCTGAG+AGG | 0.618426 | 5.1:-27897115 | None:intergenic |
| TGTTACTAATATGAATGAAG+AGG | 0.620183 | 5.1:+27897941 | MS.gene49659:CDS |
| AAGATGGTGTTGTTCAGTGG+CGG | 0.623407 | 5.1:-27895370 | None:intergenic |
| GCTTAAGACTCATCTTACAG+AGG | 0.643186 | 5.1:+27897907 | MS.gene49659:CDS |
| AAACAAACTGGAAAACAAAG+AGG | 0.646544 | 5.1:+27897523 | MS.gene49659:CDS |
| AGAAAGATACAAGAACTGCA+GGG | 0.660504 | 5.1:+27895844 | MS.gene49659:CDS |
| AAGATATATCCATACCACCA+CGG | 0.727509 | 5.1:+27897636 | MS.gene49659:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTGTTTTTTTTTTTTTTTTT+TGG | + | chr5.1:27895941-27895960 | MS.gene49659:intron | 10.0% |
| !!! | TTTTTGATTTTTGAAAAAAT+GGG | + | chr5.1:27897028-27897047 | MS.gene49659:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTGGAAAA+GGG | + | chr5.1:27895948-27895967 | MS.gene49659:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTGGAAA+AGG | + | chr5.1:27895947-27895966 | MS.gene49659:intron | 10.0% |
| !! | ATATACAAATATAATAAAGC+AGG | - | chr5.1:27895705-27895724 | None:intergenic | 15.0% |
| !! | CAATTAGAAAACAATAAAAA+CGG | - | chr5.1:27896129-27896148 | None:intergenic | 15.0% |
| !!! | AAAACTTAATTGAAGAATTT+TGG | - | chr5.1:27895410-27895429 | None:intergenic | 15.0% |
| !!! | ATGGATTTTTATATACTTTA+TGG | - | chr5.1:27895482-27895501 | None:intergenic | 15.0% |
| !!! | GTTTTTGATTTTTGAAAAAA+TGG | + | chr5.1:27897027-27897046 | MS.gene49659:intron | 15.0% |
| !! | AAAATCAAAAACACATTCAA+AGG | - | chr5.1:27897019-27897038 | None:intergenic | 20.0% |
| !! | AAAATGTAGAATAGAACAAA+GGG | - | chr5.1:27897420-27897439 | None:intergenic | 20.0% |
| !! | AAAATTCTAATCCAAAATCT+TGG | - | chr5.1:27896901-27896920 | None:intergenic | 20.0% |
| !! | AAATTCTAATCCAAAATCTT+GGG | - | chr5.1:27896900-27896919 | None:intergenic | 20.0% |
| !! | AGTTATATATACACAAATAC+TGG | + | chr5.1:27896298-27896317 | MS.gene49659:intron | 20.0% |
| !! | ATCATGTTAATTGAAAATCA+CGG | + | chr5.1:27896253-27896272 | MS.gene49659:intron | 20.0% |
| !! | ATTATTTGATTCTATAGAGA+AGG | + | chr5.1:27897145-27897164 | MS.gene49659:CDS | 20.0% |
| !! | TAAAATGTAGAATAGAACAA+AGG | - | chr5.1:27897421-27897440 | None:intergenic | 20.0% |
| !! | TTCTATTAGAACCTAATAAA+GGG | - | chr5.1:27896197-27896216 | None:intergenic | 20.0% |
| !! | TTTCTATTAGAACCTAATAA+AGG | - | chr5.1:27896198-27896217 | None:intergenic | 20.0% |
| !!! | AAGATTTTGGATTAGAATTT+TGG | + | chr5.1:27896900-27896919 | MS.gene49659:intron | 20.0% |
| !!! | TAATTTAATTTCAGACAAAG+AGG | + | chr5.1:27897777-27897796 | MS.gene49659:intron | 20.0% |
| !!! | TCAAGATTTTTAATTACCTT+TGG | + | chr5.1:27896685-27896704 | MS.gene49659:intron | 20.0% |
| !!! | TTTTTTGGAAATTCTGATTA+TGG | + | chr5.1:27896989-27897008 | MS.gene49659:intron | 20.0% |
| ! | AAAGGAAAGACAAAAATAAC+TGG | - | chr5.1:27897321-27897340 | None:intergenic | 25.0% |
| ! | AATAACAGAGACAAAATTGA+CGG | + | chr5.1:27895660-27895679 | MS.gene49659:intron | 25.0% |
| ! | AATATGCAATGAAATTTCTG+TGG | - | chr5.1:27897298-27897317 | None:intergenic | 25.0% |
| ! | AATTCTAATCCAAAATCTTG+GGG | - | chr5.1:27896899-27896918 | None:intergenic | 25.0% |
| ! | GAATATCACTAAAACAAAGA+AGG | + | chr5.1:27896933-27896952 | MS.gene49659:intron | 25.0% |
| ! | GAATTTCTAACACTTCATTA+TGG | - | chr5.1:27896373-27896392 | None:intergenic | 25.0% |
| ! | GCATTTGAAAAAGAATTTGT+TGG | + | chr5.1:27897382-27897401 | MS.gene49659:CDS | 25.0% |
| ! | GTCTCTGTTATTAAAATGTT+GGG | - | chr5.1:27895652-27895671 | None:intergenic | 25.0% |
| ! | TCATTATGGTTCATACAATA+GGG | - | chr5.1:27896359-27896378 | None:intergenic | 25.0% |
| ! | TGTCTCTGTTATTAAAATGT+TGG | - | chr5.1:27895653-27895672 | None:intergenic | 25.0% |
| ! | TGTTACTAATATGAATGAAG+AGG | + | chr5.1:27897941-27897960 | MS.gene49659:CDS | 25.0% |
| ! | TTCATTATGGTTCATACAAT+AGG | - | chr5.1:27896360-27896379 | None:intergenic | 25.0% |
| ! | TTTGCCTAATCTTAGAATTT+GGG | - | chr5.1:27896599-27896618 | None:intergenic | 25.0% |
| !! | GTTTTATATCAAGCATATTC+TGG | + | chr5.1:27897172-27897191 | MS.gene49659:CDS | 25.0% |
| !! | TATTAGGTTCTAATAGAAAG+TGG | + | chr5.1:27896199-27896218 | MS.gene49659:intron | 25.0% |
| !!! | AATAGAAAGTGGTTTTACAT+TGG | + | chr5.1:27896210-27896229 | MS.gene49659:intron | 25.0% |
| !!! | ATTAAAAATCTTGAGTTGAG+AGG | - | chr5.1:27896679-27896698 | None:intergenic | 25.0% |
| !!! | GACGGATTTTATATAGTTTA+AGG | + | chr5.1:27895678-27895697 | MS.gene49659:intron | 25.0% |
| !!! | TGATATGTTCTAGAACAAAA+AGG | - | chr5.1:27897493-27897512 | None:intergenic | 25.0% |
| !!! | TGATTTTGGTTTTGTAATGT+AGG | + | chr5.1:27895976-27895995 | MS.gene49659:intron | 25.0% |
| !!! | TTAAAAATCTTGAGTTGAGA+GGG | - | chr5.1:27896678-27896697 | None:intergenic | 25.0% |
| !!! | TTGGTAAGTAGTTTTTTTAC+TGG | + | chr5.1:27897231-27897250 | MS.gene49659:intron | 25.0% |
| AAACAAACTGGAAAACAAAG+AGG | + | chr5.1:27897523-27897542 | MS.gene49659:CDS | 30.0% | |
| AATAAGCAGAAAGAGTTGAA+GGG | + | chr5.1:27896034-27896053 | MS.gene49659:CDS | 30.0% | |
| ACTAATATGAATGAAGAGGT+AGG | + | chr5.1:27897945-27897964 | MS.gene49659:CDS | 30.0% | |
| ACTCGTTGGTACTAAATTAA+TGG | - | chr5.1:27895501-27895520 | None:intergenic | 30.0% | |
| AGAAGGCTCATACTTTATAT+TGG | + | chr5.1:27896950-27896969 | MS.gene49659:intron | 30.0% | |
| AGCATAACTGAAATAGATGA+GGG | + | chr5.1:27896748-27896767 | MS.gene49659:intron | 30.0% | |
| ATATATCTTCTATCTGAGCT+TGG | - | chr5.1:27897625-27897644 | None:intergenic | 30.0% | |
| ATGGAAACGGAAATTGAAAT+TGG | - | chr5.1:27895307-27895326 | None:intergenic | 30.0% | |
| ATTTGATTCTATAGAGAAGG+AGG | + | chr5.1:27897148-27897167 | MS.gene49659:CDS | 30.0% | |
| CAAAAATCGCATACAAAGAA+AGG | - | chr5.1:27895787-27895806 | None:intergenic | 30.0% | |
| CTTAGAGACTAAATTGAAGA+TGG | + | chr5.1:27895727-27895746 | MS.gene49659:intron | 30.0% | |
| CTTTATCTTTGACAATGTTC+TGG | - | chr5.1:27897205-27897224 | None:intergenic | 30.0% | |
| CTTTGCCTAATCTTAGAATT+TGG | - | chr5.1:27896600-27896619 | None:intergenic | 30.0% | |
| GTCAAAGATAAAGAAGAAGT+TGG | + | chr5.1:27897212-27897231 | MS.gene49659:CDS | 30.0% | |
| GTTCACTTGAAAACAAAGAT+AGG | + | chr5.1:27897081-27897100 | MS.gene49659:CDS | 30.0% | |
| TAAAGAAGAGAGACAGAAAT+TGG | + | chr5.1:27895882-27895901 | MS.gene49659:CDS | 30.0% | |
| TAGTTTAGGGACTAAATTGA+TGG | + | chr5.1:27895755-27895774 | MS.gene49659:intron | 30.0% | |
| TCACCTTCAGAAAACTATAT+TGG | + | chr5.1:27897735-27897754 | MS.gene49659:intron | 30.0% | |
| TCAGAAAACTATATTGGCAA+AGG | + | chr5.1:27897741-27897760 | MS.gene49659:intron | 30.0% | |
| TTAAACGAGTAAAGTATGAG+AGG | + | chr5.1:27896634-27896653 | MS.gene49659:intron | 30.0% | |
| TTTCAGTTATGCTCAAATTC+AGG | - | chr5.1:27896741-27896760 | None:intergenic | 30.0% | |
| ! | AAATTTTGTGATTGCTTACG+AGG | + | chr5.1:27896087-27896106 | MS.gene49659:CDS | 30.0% |
| ! | CCTTTGGATTATTTTCGAAA+AGG | - | chr5.1:27897866-27897885 | None:intergenic | 30.0% |
| ! | CCTTTTCGAAAATAATCCAA+AGG | + | chr5.1:27897863-27897882 | MS.gene49659:intron | 30.0% |
| ! | TGATATAGATAACTTTTCCG+TGG | - | chr5.1:27897656-27897675 | None:intergenic | 30.0% |
| ! | TTACCTTTGGTAGTTCAATT+TGG | + | chr5.1:27896698-27896717 | MS.gene49659:intron | 30.0% |
| ! | TTGCCAATATAGTTTTCTGA+AGG | - | chr5.1:27897741-27897760 | None:intergenic | 30.0% |
| !! | TAAAAATCTTGAGTTGAGAG+GGG | - | chr5.1:27896677-27896696 | None:intergenic | 30.0% |
| !! | TGTTTTCCAGTTTGTTTCTT+AGG | - | chr5.1:27897520-27897539 | None:intergenic | 30.0% |
| !! | TTGAAGAATTTTGGAAAACC+TGG | - | chr5.1:27895401-27895420 | None:intergenic | 30.0% |
| !! | TTTGAAAAAATGGGTTACAC+AGG | + | chr5.1:27897037-27897056 | MS.gene49659:intron | 30.0% |
| !! | TTTTACATAGATGGTGTTAG+AGG | + | chr5.1:27896331-27896350 | MS.gene49659:intron | 30.0% |
| !!! | GGAAAAGGGATTATTGATTT+TGG | + | chr5.1:27895962-27895981 | MS.gene49659:intron | 30.0% |
| !!! | GTCTGTTGTTTTTACATAGA+TGG | + | chr5.1:27896322-27896341 | MS.gene49659:intron | 30.0% |
| !!! | TCTATCCTTTTTTCTTGACT+CGG | - | chr5.1:27897549-27897568 | None:intergenic | 30.0% |
| !!! | TTCTCAATTTTTTCCAGTGT+CGG | + | chr5.1:27895594-27895613 | MS.gene49659:intron | 30.0% |
| AAATTGGAGAGAAAGGTTTG+GGG | + | chr5.1:27895898-27895917 | MS.gene49659:intron | 35.0% | |
| AAGATATATCCATACCACCA+CGG | + | chr5.1:27897636-27897655 | MS.gene49659:CDS | 35.0% | |
| AAGGCTTTACGTAATGAAGT+TGG | + | chr5.1:27897882-27897901 | MS.gene49659:intron | 35.0% | |
| ACTTCATTACGTAAAGCCTT+TGG | - | chr5.1:27897882-27897901 | None:intergenic | 35.0% | |
| AGAAAGATACAAGAACTGCA+GGG | + | chr5.1:27895844-27895863 | MS.gene49659:CDS | 35.0% | |
| AGAAATTGGAGAGAAAGGTT+TGG | + | chr5.1:27895896-27895915 | MS.gene49659:intron | 35.0% | |
| AGAGCAAAAGTTGAGTTAGT+AGG | + | chr5.1:27896867-27896886 | MS.gene49659:intron | 35.0% | |
| AGAGGAAGAAGAAATGGAAA+CGG | - | chr5.1:27895320-27895339 | None:intergenic | 35.0% | |
| CATATCCTGATTTCATTGCA+TGG | - | chr5.1:27896798-27896817 | None:intergenic | 35.0% | |
| CCTGAAAAAGTTGAAGTTAG+AGG | - | chr5.1:27895338-27895357 | None:intergenic | 35.0% | |
| CTAATCTTAGAATTTGGGCT+GGG | - | chr5.1:27896594-27896613 | None:intergenic | 35.0% | |
| CTACTAGTGTTCCCTTTATT+AGG | + | chr5.1:27896183-27896202 | MS.gene49659:intron | 35.0% | |
| CTTGAAAAACAAAATGGACC+AGG | + | chr5.1:27897354-27897373 | MS.gene49659:CDS | 35.0% | |
| GAAATTGGAGAGAAAGGTTT+GGG | + | chr5.1:27895897-27895916 | MS.gene49659:intron | 35.0% | |
| GAAGATGGAGTGATAGTTTA+GGG | + | chr5.1:27895742-27895761 | MS.gene49659:intron | 35.0% | |
| GAAGTTAGAGGAAGAAGAAA+TGG | - | chr5.1:27895326-27895345 | None:intergenic | 35.0% | |
| GAATAAGCAGAAAGAGTTGA+AGG | + | chr5.1:27896033-27896052 | MS.gene49659:CDS | 35.0% | |
| GACCAGCTTGAAAAACAAAA+TGG | + | chr5.1:27897348-27897367 | MS.gene49659:CDS | 35.0% | |
| GAGAATTTATCTTCTCTGAG+AGG | - | chr5.1:27897118-27897137 | None:intergenic | 35.0% | |
| GAGCATAACTGAAATAGATG+AGG | + | chr5.1:27896747-27896766 | MS.gene49659:intron | 35.0% | |
| GATAACCATGCAATGAAATC+AGG | + | chr5.1:27896790-27896809 | MS.gene49659:intron | 35.0% | |
| GTAGTGCGTGTATAAAGTTT+GGG | + | chr5.1:27896526-27896545 | MS.gene49659:intron | 35.0% | |
| TAGAAAGATACAAGAACTGC+AGG | + | chr5.1:27895843-27895862 | MS.gene49659:CDS | 35.0% | |
| TAGAAATTCTGCCTTCATTG+CGG | + | chr5.1:27896384-27896403 | MS.gene49659:intron | 35.0% | |
| TGAAGATGGAGTGATAGTTT+AGG | + | chr5.1:27895741-27895760 | MS.gene49659:intron | 35.0% | |
| TGTAGTGCGTGTATAAAGTT+TGG | + | chr5.1:27896525-27896544 | MS.gene49659:intron | 35.0% | |
| TTTGAGAATAGAAGCAGAAG+CGG | + | chr5.1:27895803-27895822 | MS.gene49659:intron | 35.0% | |
| ! | AGCAATCACAAAATTTTCCC+TGG | - | chr5.1:27896083-27896102 | None:intergenic | 35.0% |
| ! | TATAGATAACTTTTCCGTGG+TGG | - | chr5.1:27897653-27897672 | None:intergenic | 35.0% |
| ! | TCGCTGTTTCGATGAATTAA+CGG | + | chr5.1:27895446-27895465 | MS.gene49659:intron | 35.0% |
| !! | CCTCTAACTTCAACTTTTTC+AGG | + | chr5.1:27895335-27895354 | MS.gene49659:intron | 35.0% |
| !!! | GTCCATTTTGTTTTTCAAGC+TGG | - | chr5.1:27897353-27897372 | None:intergenic | 35.0% |
| AAAACCACCTTGTAAGGTGA+GGG | - | chr5.1:27896555-27896574 | None:intergenic | 40.0% | |
| AACCGAAGTTCGAGATCTAA+GGG | + | chr5.1:27895256-27895275 | MS.gene49659:CDS | 40.0% | |
| ACAACACCATCTTCTAATCC+AGG | + | chr5.1:27895380-27895399 | MS.gene49659:CDS | 40.0% | |
| ACGGAAATTGAAATTGGCGT+TGG | - | chr5.1:27895301-27895320 | None:intergenic | 40.0% | |
| ACTCATCTTACAGAGGTTTC+AGG | + | chr5.1:27897914-27897933 | MS.gene49659:CDS | 40.0% | |
| ACTTTATACACGCACTACAC+AGG | - | chr5.1:27896524-27896543 | None:intergenic | 40.0% | |
| ATTGACACCCAACACAATGA+AGG | - | chr5.1:27896466-27896485 | None:intergenic | 40.0% | |
| CACAGACCTAAGAAACAAAC+TGG | + | chr5.1:27897511-27897530 | MS.gene49659:CDS | 40.0% | |
| CAGCCAAATTGAACTACCAA+AGG | - | chr5.1:27896704-27896723 | None:intergenic | 40.0% | |
| CCTAATCTTAGAATTTGGGC+TGG | - | chr5.1:27896595-27896614 | None:intergenic | 40.0% | |
| CCTTACAAAACCACCTTGTA+AGG | - | chr5.1:27896561-27896580 | None:intergenic | 40.0% | |
| CTCATCTTACAGAGGTTTCA+GGG | + | chr5.1:27897915-27897934 | MS.gene49659:CDS | 40.0% | |
| GAATAGCTTACTTCAGTCCA+GGG | + | chr5.1:27896063-27896082 | MS.gene49659:CDS | 40.0% | |
| GAGACAGAAATTGGAGAGAA+AGG | + | chr5.1:27895891-27895910 | MS.gene49659:CDS | 40.0% | |
| GCTTAAGACTCATCTTACAG+AGG | + | chr5.1:27897907-27897926 | MS.gene49659:CDS | 40.0% | |
| TAACCGAAGTTCGAGATCTA+AGG | + | chr5.1:27895255-27895274 | MS.gene49659:CDS | 40.0% | |
| TACCCTTAGATCTCGAACTT+CGG | - | chr5.1:27895261-27895280 | None:intergenic | 40.0% | |
| TCAAGCTGGTCACTGAATAA+AGG | - | chr5.1:27897339-27897358 | None:intergenic | 40.0% | |
| TCATTGTGTTGGGTGTCAAT+GGG | + | chr5.1:27896466-27896485 | MS.gene49659:intron | 40.0% | |
| TGAATAGCTTACTTCAGTCC+AGG | + | chr5.1:27896062-27896081 | MS.gene49659:CDS | 40.0% | |
| TTCATTGTGTTGGGTGTCAA+TGG | + | chr5.1:27896465-27896484 | MS.gene49659:intron | 40.0% | |
| ! | ATAACTTTTCCGTGGTGGTA+TGG | - | chr5.1:27897648-27897667 | None:intergenic | 40.0% |
| ! | ATTGGCGTTGGAGAAGAAAA+TGG | - | chr5.1:27895289-27895308 | None:intergenic | 40.0% |
| ! | GGAAAACCTGGATTAGAAGA+TGG | - | chr5.1:27895389-27895408 | None:intergenic | 40.0% |
| ! | GTTCGAAGCATGCATACTTT+TGG | + | chr5.1:27897259-27897278 | MS.gene49659:intron | 40.0% |
| !! | CCAGCCCAAATTCTAAGATT+AGG | + | chr5.1:27896592-27896611 | MS.gene49659:intron | 40.0% |
| !! | TAGAAGATGGTGTTGTTCAG+TGG | - | chr5.1:27895376-27895395 | None:intergenic | 40.0% |
| !!! | AGTAGTTTTTTTACTGGCGC+AGG | + | chr5.1:27897237-27897256 | MS.gene49659:intron | 40.0% |
| !!! | CCTTACAAGGTGGTTTTGTA+AGG | + | chr5.1:27896558-27896577 | MS.gene49659:intron | 40.0% |
| !!! | CTTTTTCAAATGCTGAGACC+TGG | - | chr5.1:27897375-27897394 | None:intergenic | 40.0% |
| AACTTGAAGCAAAGCTGGAC+GGG | + | chr5.1:27897579-27897598 | MS.gene49659:CDS | 45.0% | |
| ACAAGAACTGCAGGGTGAAT+TGG | + | chr5.1:27895852-27895871 | MS.gene49659:CDS | 45.0% | |
| AGAGGCCGAGTCAAGAAAAA+AGG | + | chr5.1:27897541-27897560 | MS.gene49659:CDS | 45.0% | |
| ATAGAAGCAGAAGCGGAATG+AGG | + | chr5.1:27895810-27895829 | MS.gene49659:intron | 45.0% | |
| CAAAACCACCTTGTAAGGTG+AGG | - | chr5.1:27896556-27896575 | None:intergenic | 45.0% | |
| CACCCAACACAATGAAGGTA+CGG | - | chr5.1:27896461-27896480 | None:intergenic | 45.0% | |
| CTCAGAACTTGAAGCAAAGC+TGG | + | chr5.1:27897574-27897593 | MS.gene49659:CDS | 45.0% | |
| CTCCGTACCTTCATTGTGTT+GGG | + | chr5.1:27896456-27896475 | MS.gene49659:intron | 45.0% | |
| GAACTTGAAGCAAAGCTGGA+CGG | + | chr5.1:27897578-27897597 | MS.gene49659:CDS | 45.0% | |
| GTAAAGTATGAGAGGAAGCG+TGG | + | chr5.1:27896642-27896661 | MS.gene49659:intron | 45.0% | |
| ! | ACGTCTTTGATCAGAGGTGT+TGG | - | chr5.1:27895530-27895549 | None:intergenic | 45.0% |
| ! | AGGTTTACGCCCCAAGATTT+TGG | + | chr5.1:27896887-27896906 | MS.gene49659:intron | 45.0% |
| !! | AAGATGGTGTTGTTCAGTGG+CGG | - | chr5.1:27895373-27895392 | None:intergenic | 45.0% |
| !! | GAATATTAAATAAAATAAAA+AGG | - | chr5.1:27896821-27896840 | None:intergenic | 5.0% |
| !!! | ACTTTTTTTTTTTTTTTTTT+TGG | + | chr5.1:27896974-27896993 | MS.gene49659:intron | 5.0% |
| ACAGGCCATATCTCTACGCA+AGG | - | chr5.1:27896506-27896525 | None:intergenic | 50.0% | |
| ACTTGAAGCAAAGCTGGACG+GGG | + | chr5.1:27897580-27897599 | MS.gene49659:CDS | 50.0% | |
| CCAGACACGTCTTTGATCAG+AGG | - | chr5.1:27895536-27895555 | None:intergenic | 50.0% | |
| CCTCCGTACCTTCATTGTGT+TGG | + | chr5.1:27896455-27896474 | MS.gene49659:intron | 50.0% | |
| CCTCTGATCAAAGACGTGTC+TGG | + | chr5.1:27895533-27895552 | MS.gene49659:intron | 50.0% | |
| CTGATCAAAGACGTGTCTGG+TGG | + | chr5.1:27895536-27895555 | MS.gene49659:intron | 50.0% | |
| GCCATATCTCTACGCAAGGT+GGG | - | chr5.1:27896502-27896521 | None:intergenic | 50.0% | |
| TCCCACCTTGCGTAGAGATA+TGG | + | chr5.1:27896498-27896517 | MS.gene49659:intron | 50.0% | |
| TTGTGTTGGGTGTCAATGGG+TGG | + | chr5.1:27896469-27896488 | MS.gene49659:intron | 50.0% | |
| ! | CCAACACAATGAAGGTACGG+AGG | - | chr5.1:27896458-27896477 | None:intergenic | 50.0% |
| !! | CAGTGTCGGTGTTCTGTGTA+CGG | + | chr5.1:27895608-27895627 | MS.gene49659:intron | 50.0% |
| !! | CATTTGGGTTGCCTTCACTG+CGG | + | chr5.1:27896432-27896451 | MS.gene49659:intron | 50.0% |
| AATGCCGCAATCAGGTGGCT+AGG | - | chr5.1:27896416-27896435 | None:intergenic | 55.0% | |
| ACCCAAATGCCGCAATCAGG+TGG | - | chr5.1:27896421-27896440 | None:intergenic | 55.0% | |
| AGCCACCTGATTGCGGCATT+TGG | + | chr5.1:27896416-27896435 | MS.gene49659:intron | 55.0% | |
| ATGCCGCAATCAGGTGGCTA+GGG | - | chr5.1:27896415-27896434 | None:intergenic | 55.0% | |
| CGTACACAGAACACCGACAC+TGG | - | chr5.1:27895610-27895629 | None:intergenic | 55.0% | |
| GCAACCCAAATGCCGCAATC+AGG | - | chr5.1:27896424-27896443 | None:intergenic | 55.0% | |
| GCCACCTGATTGCGGCATTT+GGG | + | chr5.1:27896417-27896436 | MS.gene49659:intron | 55.0% | |
| GGCCATATCTCTACGCAAGG+TGG | - | chr5.1:27896503-27896522 | None:intergenic | 55.0% | |
| !! | GGTGTTGGTGCTACACTCGT+TGG | - | chr5.1:27895515-27895534 | None:intergenic | 55.0% |
| CACCCCTAGCCACCTGATTG+CGG | + | chr5.1:27896409-27896428 | MS.gene49659:intron | 60.0% | |
| CTAGGGGTGGACCGCAATGA+AGG | - | chr5.1:27896398-27896417 | None:intergenic | 60.0% | |
| GCAGCCCTCACCTTACAAGG+TGG | + | chr5.1:27896548-27896567 | MS.gene49659:intron | 60.0% | |
| TGCCGCAATCAGGTGGCTAG+GGG | - | chr5.1:27896414-27896433 | None:intergenic | 60.0% | |
| TGGGCAGCCCTCACCTTACA+AGG | + | chr5.1:27896545-27896564 | MS.gene49659:intron | 60.0% | |
| AGGTACGGAGGCCGCAGTGA+AGG | - | chr5.1:27896446-27896465 | None:intergenic | 65.0% | |
| CGCAATCAGGTGGCTAGGGG+TGG | - | chr5.1:27896411-27896430 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 27895206 | 27897971 | 27895206 | ID=MS.gene49659 |
| chr5.1 | mRNA | 27895206 | 27897971 | 27895206 | ID=MS.gene49659.t1;Parent=MS.gene49659 |
| chr5.1 | exon | 27895206 | 27895277 | 27895206 | ID=MS.gene49659.t1.exon1;Parent=MS.gene49659.t1 |
| chr5.1 | CDS | 27895206 | 27895277 | 27895206 | ID=cds.MS.gene49659.t1;Parent=MS.gene49659.t1 |
| chr5.1 | exon | 27895357 | 27895401 | 27895357 | ID=MS.gene49659.t1.exon2;Parent=MS.gene49659.t1 |
| chr5.1 | CDS | 27895357 | 27895401 | 27895357 | ID=cds.MS.gene49659.t1;Parent=MS.gene49659.t1 |
| chr5.1 | exon | 27895814 | 27895912 | 27895814 | ID=MS.gene49659.t1.exon3;Parent=MS.gene49659.t1 |
| chr5.1 | CDS | 27895814 | 27895912 | 27895814 | ID=cds.MS.gene49659.t1;Parent=MS.gene49659.t1 |
| chr5.1 | exon | 27895998 | 27896108 | 27895998 | ID=MS.gene49659.t1.exon4;Parent=MS.gene49659.t1 |
| chr5.1 | CDS | 27895998 | 27896108 | 27895998 | ID=cds.MS.gene49659.t1;Parent=MS.gene49659.t1 |
| chr5.1 | exon | 27897059 | 27897233 | 27897059 | ID=MS.gene49659.t1.exon5;Parent=MS.gene49659.t1 |
| chr5.1 | CDS | 27897059 | 27897233 | 27897059 | ID=cds.MS.gene49659.t1;Parent=MS.gene49659.t1 |
| chr5.1 | exon | 27897347 | 27897403 | 27897347 | ID=MS.gene49659.t1.exon6;Parent=MS.gene49659.t1 |
| chr5.1 | CDS | 27897347 | 27897403 | 27897347 | ID=cds.MS.gene49659.t1;Parent=MS.gene49659.t1 |
| chr5.1 | exon | 27897504 | 27897662 | 27897504 | ID=MS.gene49659.t1.exon7;Parent=MS.gene49659.t1 |
| chr5.1 | CDS | 27897504 | 27897662 | 27897504 | ID=cds.MS.gene49659.t1;Parent=MS.gene49659.t1 |
| chr5.1 | exon | 27897901 | 27897971 | 27897901 | ID=MS.gene49659.t1.exon8;Parent=MS.gene49659.t1 |
| chr5.1 | CDS | 27897901 | 27897971 | 27897901 | ID=cds.MS.gene49659.t1;Parent=MS.gene49659.t1 |
| Gene Sequence |
| Protein sequence |
