AlfalfaGEDB | MS.gene50174

M. sativa cultivar XinJiangDaYe / MS.gene50174

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50174.t1	XP_003616403.1	97.4	418	4	1	1	411	1	418	1.60E-229	805.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50174.t1	Q65XV8	64.3	401	132	2	1	401	1	390	4.0e-149	529.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50174.t1	G7KBQ8	97.4	418	4	1	1	411	1	418	1.1e-229	805.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049181	MS.gene50174	0.831211	1.90E-55	-1.69E-46
MS.gene049312	MS.gene50174	0.820865	5.47E-53	-1.69E-46
MS.gene050363	MS.gene50174	0.830442	2.93E-55	-1.69E-46
MS.gene050883	MS.gene50174	0.855626	5.56E-62	-1.69E-46
MS.gene05142	MS.gene50174	0.805118	1.56E-49	-1.69E-46
MS.gene051946	MS.gene50174	0.810452	1.14E-50	-1.69E-46
MS.gene053549	MS.gene50174	0.842163	3.06E-58	-1.69E-46
MS.gene053826	MS.gene50174	0.810271	1.25E-50	-1.69E-46
MS.gene055549	MS.gene50174	0.833572	4.94E-56	-1.69E-46
MS.gene055550	MS.gene50174	0.841511	4.55E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50174.t1	MTR_5g079840	97.368	418	4	1	1	411	1	418	0.0	841
MS.gene50174.t1	MTR_2g096950	73.224	366	97	1	1	366	1	365	0.0	582
MS.gene50174.t1	MTR_3g067795	72.900	369	99	1	1	369	3	370	0.0	575
MS.gene50174.t1	MTR_3g067795	72.900	369	99	1	1	369	3	370	0.0	574
MS.gene50174.t1	MTR_7g061660	66.837	392	113	3	1	390	1	377	0.0	536
MS.gene50174.t1	MTR_3g067795	78.966	290	61	0	80	369	1	290	9.36e-179	501
MS.gene50174.t1	MTR_3g067795	78.966	290	61	0	80	369	1	290	1.49e-178	500
MS.gene50174.t1	MTR_2g096970	62.327	361	120	4	1	360	1	346	2.37e-168	476
MS.gene50174.t1	MTR_5g038870	60.440	364	139	3	1	362	1	361	4.21e-163	464
MS.gene50174.t1	MTR_7g009320	58.760	371	139	4	1	361	41	407	2.80e-162	465

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene50174.t1	AT1G07570	67.385	371	114	2	1	371	1	364	535
MS.gene50174.t1	AT1G07570	67.385	371	114	2	1	371	1	364	535
MS.gene50174.t1	AT1G07570	67.385	371	114	2	1	371	1	364	535
MS.gene50174.t1	AT2G28930	68.378	370	112	2	1	370	1	365	533
MS.gene50174.t1	AT2G28930	68.378	370	109	3	1	370	1	362	529
MS.gene50174.t1	AT5G02290	67.036	361	112	2	1	361	1	354	526
MS.gene50174.t1	AT5G02290	67.036	361	112	2	1	361	1	354	526
MS.gene50174.t1	AT1G07570	67.606	355	111	1	17	371	25	375	519
MS.gene50174.t1	AT2G39660	67.313	361	110	2	1	361	1	353	518
MS.gene50174.t1	AT2G28930	72.446	323	87	1	48	370	53	373	514

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Find 103 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGAAGCTCTTCATAT+TGG	0.349706	5.4:-62704365	None:intergenic
AAACCCGGCGTTTGCTGTTG+AGG	0.489930	5.4:-62705624	None:intergenic
AAAGGAGTGTTCATAGCTCA+AGG	0.557169	5.4:+62705848	MS.gene50174:CDS
AACGTGCGCTTGACAACAAC+AGG	0.430315	5.4:+62705560	MS.gene50174:CDS
AAGAGTATTGGAGGAACTTC+AGG	0.301789	5.4:+62705771	MS.gene50174:CDS
AAGAGTGATGTATACAGTTT+CGG	0.425587	5.4:+62705508	MS.gene50174:CDS
AAGATCTCGCCCTCAGTTCG+AGG	0.445161	5.4:-62704334	None:intergenic
AAGGACAGAAGCAGAGAAAC+TGG	0.420659	5.4:+62704256	MS.gene50174:CDS
AATGAAAGTAGCTGACCTTG+CGG	0.705764	5.4:+62705696	MS.gene50174:CDS
AATGCAAAACTTTCCGATTT+TGG	0.077905	5.4:+62705129	MS.gene50174:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTGAAGCTCTTCATAT+TGG	-	chr5.4:62704368-62704387	None:intergenic	30.0%
AACTTAGACACTAGATTTGT+TGG	-	chr5.4:62704131-62704150	None:intergenic	30.0%
AAGAGTGATGTATACAGTTT+CGG	+	chr5.4:62705508-62705527	MS.gene50174:CDS	30.0%
ATAATAGTCATGTCTCTACA+AGG	+	chr5.4:62705178-62705197	MS.gene50174:CDS	30.0%
ATAATGCATGTTTGGATTTG+TGG	-	chr5.4:62705365-62705384	None:intergenic	30.0%
ATAGACAGAAATCAATTACC+TGG	+	chr5.4:62704678-62704697	MS.gene50174:intron	30.0%
CAAGACAACATAGAAGTAAT+AGG	+	chr5.4:62705884-62705903	MS.gene50174:CDS	30.0%
CTATTACTTCTATGTTGTCT+TGG	-	chr5.4:62705886-62705905	None:intergenic	30.0%
GGGAACACAATTTAATTGAA+TGG	+	chr5.4:62705590-62705609	MS.gene50174:CDS	30.0%
GTACTTAGTTAAAAACGTTG+TGG	+	chr5.4:62705315-62705334	MS.gene50174:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	62703447	62705945	62703447	ID=MS.gene50174
chr5.4	mRNA	62703447	62705945	62703447	ID=MS.gene50174.t1;Parent=MS.gene50174
chr5.4	exon	62703447	62703498	62703447	ID=MS.gene50174.t1.exon1;Parent=MS.gene50174.t1
chr5.4	CDS	62703447	62703498	62703447	ID=cds.MS.gene50174.t1;Parent=MS.gene50174.t1
chr5.4	exon	62704245	62704573	62704245	ID=MS.gene50174.t1.exon2;Parent=MS.gene50174.t1
chr5.4	CDS	62704245	62704573	62704245	ID=cds.MS.gene50174.t1;Parent=MS.gene50174.t1
chr5.4	exon	62704682	62704817	62704682	ID=MS.gene50174.t1.exon3;Parent=MS.gene50174.t1
chr5.4	CDS	62704682	62704817	62704682	ID=cds.MS.gene50174.t1;Parent=MS.gene50174.t1
chr5.4	exon	62704906	62705048	62704906	ID=MS.gene50174.t1.exon4;Parent=MS.gene50174.t1
chr5.4	CDS	62704906	62705048	62704906	ID=cds.MS.gene50174.t1;Parent=MS.gene50174.t1
chr5.4	exon	62705123	62705246	62705123	ID=MS.gene50174.t1.exon5;Parent=MS.gene50174.t1
chr5.4	CDS	62705123	62705246	62705123	ID=cds.MS.gene50174.t1;Parent=MS.gene50174.t1
chr5.4	exon	62705494	62705945	62705494	ID=MS.gene50174.t1.exon6;Parent=MS.gene50174.t1
chr5.4	CDS	62705494	62705945	62705494	ID=cds.MS.gene50174.t1;Parent=MS.gene50174.t1

Gene Sequence

>MS.gene50174

ATGGGTTGTTGTCTTAGTGCTAGAATCAAAGCTGAAAGCCCTCCACGTAATGGTATGTATGGAATATTTGTTGCATGTCTTCTTTTTCATCTTTTCTTCTACTCCTTTTATTTATAAGTTTTTTTTATATTAATCACCTTGTTGTGAGTTTCTTTGGATTAATTAATTGGAATTTTGAATATGTTTGTGTTTATGATTTGAGTTGAGACTATGAAATATGGTTGCTTGATTTGGCAACTTTAGTGATTGGAGGAACTAGGAAGATGTTCATGTTATTTTAGTTTGTGTTTGTTTTTGAAGAATAATTCACTATAAAAAGGAACTTGCTTTAATTGATGATTTTTGTTTGGTGATTAATAGCTATGTTGATGATAATGGTGAGTTATGTGATTTTTGGTAAAGAGAGAGCCAGAGTAAATAAAAGTGAAGTAATAAATTGAATCATAGTATTGATTTAAGGTTACAAGATTGTGAAAATTCTTGATTTGTTTTGGAAATTTGAAAGATCCACTCCTTGTATGAGCATTTTCCTATGGTATTGAATTCAATTTTTCTTTGTTTAGATTGTTAAGAAAAAATCAAGGATGAACTTAAGAACTTTCACCACTTGGAAAGCAGAATTTATGCTTATTTATCTAATTAATTTATTAAGTGTTTTACCTTTTCATGATCTTGTAACAACCAACAAATCTAGTGTCTAAGTTTATCAAGAAGCATAATTTAGATCAATTAGTAACTTGATTAGAGTGCTTGTATATGTCCTGAAAAGTTGATCCATTTTTCTTATGAAACGTGTAGGTTCGAGTTCGAAGGACAGAAGCAGAGAAACTGGCTTGAGTGGTCGAAGCAGTGGCAAGGTCTCCACTGCACCTACTGCTCCTCCAACTCCTCGAACTGAGGGCGAGATCTTGAAGTCTTCCAATATGAAGAGCTTCACTTTTAGTGAGCTAAAAACTGCTACAAGAAATTTTCGTCCTGATAGTGTGGTTGGTGAAGGTGGATTCGGAGCTGTATTTAAGGGGTGGATCGATGAGAACACACTTGTACCGGTCAGACCAGGGACTGGAGTTGTCATTGCTGTCAAGAGGCTTAACCAAGAAGGTTTACAAGGACACAGTGAGTGGTTGGTAAGTGTCTTCTAGCAAAGGTTATCTACACCTTGGAAATTTGCTCAAAACCTGAGAATTTAAGATACAGTTTTTGTATTGATGTAACTAATTAGCCTTGTGCTATAGACAGAAATCAATTACCTGGGACAACTGCATCATCCTAATCTTGTGAAACTGATCGGTTACTGCTTCGAAGATGAACATCGGCTTTTGGTTTATGAGTTTTTGACCAAAGGCAGTTTGGATAATCACTTATTTCGAAGTAAGTTATTGATTTTCCTTCAAAATTCTCTTATGCTTAGCACTATCAAATACCTCAAACTCTAACTTATCAACTCTTTTTGGAACAGGAGCTTCTTATTTTCAACCACTTTCTTGGAGCATCCGAATGAAGGTGGCTCTTGATGCTGCTAAGGGTCTTGCATATCTTCACAGCGATGAAGCAAAAGTGATATATCGTGACTTTAAAACTTCAAATATATTGCTCGATACAGTAAGTAAATCTCATTGCTCTTATAATTCAATTGTAAAATGGGCTTTTCTGACATTCCGTTTTGTCGATGGCAGAATTATAATGCAAAACTTTCCGATTTTGGATTGGCTAAGGATGGACCGGCAGGTGATAATAGTCATGTCTCTACAAGGGTTATGGGCACATACGGCTATGCCGCTCCTGAATATATGGCCACAGGTACAAAACTTACAAAGTACTTATGATTACTTTAATTTGTTGTACCATTTCACATGTGACATAATCATGTACTTAGTTAAAAACGTTGTGGTCCACTAGGATTCTGCCAAAATCTCCACAAATCCAAACATGCATTATTGCATTTAGTCTTTGAAACTATATTAATTTGTTTGAAAACTTAGCAGTTTGAACTTGACTCTCACTTGTCACTTCTAACACATTGCTTTCCATTGTCTTTTTTGTGCAGGTCATTTGACCAAAAAGAGTGATGTATACAGTTTCGGCGTTGTGCTCCTTGAAATTATGTCTGGAAAACGTGCGCTTGACAACAACAGGCCATCTGGGGAACACAATTTAATTGAATGGGCCAAACCTTACCTCAACAGCAAACGCCGGGTTTTCCAAGTTATGGATGCTCGCATTGAAGGCCAATACACAGTGCGTCAAGCAATGAAAGTAGCTGACCTTGCGGTTAGATGCCTGTCCGTTGAACCAAGATTCAGACCGAAAATGGACGAGATTGTAAGAGTATTGGAGGAACTTCAGGGCTCTTCAGTTGATACGGCTGGAGGAGTCGGAAGCTCTCGAGATCAAAATATTAAAAGGAGTGTTCATAGCTCAAGGAACAACAACGGTCCAAGACAACATAGAAGTAATAGGCCAAGTGTAACAATAAACAATGAAATATTAGTTATGTAG

Protein sequence

>MS.gene50174.t1

MGCCLSARIKAESPPRNGSSSKDRSRETGLSGRSSGKVSTAPTAPPTPRTEGEILKSSNMKSFTFSELKTATRNFRPDSVVGEGGFGAVFKGWIDENTLVPVRPGTGVVIAVKRLNQEGLQGHSEWLTEINYLGQLHHPNLVKLIGYCFEDEHRLLVYEFLTKGSLDNHLFRRASYFQPLSWSIRMKVALDAAKGLAYLHSDEAKVIYRDFKTSNILLDTNYNAKLSDFGLAKDGPAGDNSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEIMSGKRALDNNRPSGEHNLIEWAKPYLNSKRRVFQVMDARIEGQYTVRQAMKVADLAVRCLSVEPRFRPKMDEIVRVLEELQGSSVDTAGGVGSSRDQNIKRSVHSSRNNNGPRQHRSNRPSVTINNEILVM