Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51542.t1 | AES59123.1 | 98.3 | 362 | 4 | 2 | 1 | 362 | 37 | 396 | 6.60E-200 | 706.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51542.t1 | Q9SZ53 | 71.8 | 355 | 98 | 1 | 3 | 355 | 1 | 355 | 1.2e-149 | 530.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51542.t1 | G7I890 | 98.3 | 362 | 4 | 2 | 1 | 362 | 37 | 396 | 4.8e-200 | 706.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050303 | MS.gene51542 | 0.813683 | 2.26E-51 | -1.69E-46 |
| MS.gene050312 | MS.gene51542 | 0.81594 | 7.15E-52 | -1.69E-46 |
| MS.gene051064 | MS.gene51542 | 0.877174 | 7.76E-69 | -1.69E-46 |
| MS.gene051678 | MS.gene51542 | 0.821818 | 3.30E-53 | -1.69E-46 |
| MS.gene052176 | MS.gene51542 | 0.807857 | 4.12E-50 | -1.69E-46 |
| MS.gene052358 | MS.gene51542 | -0.809089 | 2.25E-50 | -1.69E-46 |
| MS.gene052389 | MS.gene51542 | 0.803283 | 3.75E-49 | -1.69E-46 |
| MS.gene052586 | MS.gene51542 | 0.812561 | 3.98E-51 | -1.69E-46 |
| MS.gene053294 | MS.gene51542 | 0.831596 | 1.53E-55 | -1.69E-46 |
| MS.gene053963 | MS.gene51542 | 0.819706 | 1.01E-52 | -1.69E-46 |
| MS.gene055555 | MS.gene51542 | 0.807066 | 6.06E-50 | -1.69E-46 |
| MS.gene05659 | MS.gene51542 | 0.815958 | 7.08E-52 | -1.69E-46 |
| MS.gene057026 | MS.gene51542 | 0.823946 | 1.05E-53 | -1.69E-46 |
| MS.gene058498 | MS.gene51542 | 0.987909 | 5.43E-172 | -1.69E-46 |
| MS.gene058500 | MS.gene51542 | 0.968753 | 3.97E-129 | -1.69E-46 |
| MS.gene058502 | MS.gene51542 | 0.898245 | 6.41E-77 | -1.69E-46 |
| MS.gene059935 | MS.gene51542 | 0.820201 | 7.77E-53 | -1.69E-46 |
| MS.gene060572 | MS.gene51542 | 0.810517 | 1.11E-50 | -1.69E-46 |
| MS.gene060586 | MS.gene51542 | 0.831171 | 1.94E-55 | -1.69E-46 |
| MS.gene060879 | MS.gene51542 | 0.864038 | 1.62E-64 | -1.69E-46 |
| MS.gene061040 | MS.gene51542 | -0.810051 | 1.40E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 74 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCTTATTATCATTGCTTC+TGG | 0.154103 | 1.2:+8131128 | None:intergenic |
| CTACCAATTGTTGGCTTGAT+AGG | 0.213993 | 1.2:+8129725 | None:intergenic |
| CCGGTGTTTGGCGCCATCTT+TGG | 0.215436 | 1.2:-8128742 | MS.gene51542:CDS |
| GTCTTAGGTGATAAGGTAAA+AGG | 0.236931 | 1.2:-8131186 | MS.gene51542:CDS |
| ATTCATGCAGGACGAATTAA+TGG | 0.284463 | 1.2:-8130487 | MS.gene51542:CDS |
| GAAAATGACAATCTTAGATA+TGG | 0.340077 | 1.2:-8132180 | MS.gene51542:CDS |
| TTAAATCTTGCAAGAGCTAT+AGG | 0.342994 | 1.2:-8130460 | MS.gene51542:intron |
| TCCCAGAAGCAATGATAATA+AGG | 0.343732 | 1.2:-8131130 | MS.gene51542:CDS |
| TCCTTATTATCATTGCTTCT+GGG | 0.356241 | 1.2:+8131129 | None:intergenic |
| TCCTTCTCAATCACAAGCTC+AGG | 0.385685 | 1.2:+8130535 | None:intergenic |
| GACTTTGATGGACCAACTTC+AGG | 0.394479 | 1.2:-8130955 | MS.gene51542:CDS |
| CGATAACATGACAATGATAT+TGG | 0.399156 | 1.2:-8128703 | MS.gene51542:CDS |
| TGCCAAGCACCTTCACCAAC+AGG | 0.407215 | 1.2:-8131486 | MS.gene51542:CDS |
| TGGAGGGAATTAGCAGTCTT+AGG | 0.418225 | 1.2:-8131201 | MS.gene51542:CDS |
| AAACTTACAATGTTTATGTC+TGG | 0.418978 | 1.2:+8130083 | None:intergenic |
| CTTCAACTGTTCTCCAATGT+TGG | 0.431839 | 1.2:+8128597 | None:intergenic |
| GTACAAAATCTACCAATTGT+TGG | 0.434248 | 1.2:+8129716 | None:intergenic |
| TACAATGTTTATGTCTGGAT+TGG | 0.435988 | 1.2:+8130088 | None:intergenic |
| GGGCCTCATTCAGACTTTGA+TGG | 0.437338 | 1.2:-8130967 | MS.gene51542:CDS |
| CAAAGGCCCAATCATCACTT+TGG | 0.437500 | 1.2:+8131106 | None:intergenic |
| CCATCTTTGGCTGTTGGTGA+TGG | 0.439337 | 1.2:-8128729 | MS.gene51542:CDS |
| GATAAGGTAAAAGGGTTCAA+TGG | 0.446026 | 1.2:-8131177 | MS.gene51542:CDS |
| TAAGGACCAAAGTGATGATT+GGG | 0.447461 | 1.2:-8131112 | MS.gene51542:CDS |
| ATTCACGCTGCGTAATATCT+AGG | 0.452068 | 1.2:-8130873 | MS.gene51542:CDS |
| ATAAGGACCAAAGTGATGAT+TGG | 0.459298 | 1.2:-8131113 | MS.gene51542:CDS |
| AATGTTTATGTCTGGATTGG+CGG | 0.464448 | 1.2:+8130091 | None:intergenic |
| CGTAATATCTAGGAATGGTC+AGG | 0.468140 | 1.2:-8130863 | MS.gene51542:intron |
| TTGCCTATCAAGCCAACAAT+TGG | 0.471715 | 1.2:-8129728 | MS.gene51542:CDS |
| TGATGATTGGGCCTTTGAAA+AGG | 0.472066 | 1.2:-8131100 | MS.gene51542:intron |
| CACCTGTTGGTGAAGGTGCT+TGG | 0.474380 | 1.2:+8131484 | None:intergenic |
| TGTACGTCAAGAACTTCTCT+TGG | 0.476519 | 1.2:-8129698 | MS.gene51542:intron |
| GGGTTCAATGGAATGATTGA+AGG | 0.480510 | 1.2:-8131165 | MS.gene51542:CDS |
| ATTAGCAGTCTTAGGTGATA+AGG | 0.484258 | 1.2:-8131193 | MS.gene51542:CDS |
| GAATGATTGAAGGATTGATT+CGG | 0.488358 | 1.2:-8131155 | MS.gene51542:CDS |
| GAATACATAGCTGGAGATGT+TGG | 0.491063 | 1.2:-8131449 | MS.gene51542:CDS |
| TTCATGCAGGACGAATTAAT+GGG | 0.491284 | 1.2:-8130486 | MS.gene51542:CDS |
| TGATAGCTTGTGATGGCATA+TGG | 0.507088 | 1.2:-8129834 | MS.gene51542:intron |
| AAGAGTGCTAGACCGGTGTT+TGG | 0.509475 | 1.2:-8128754 | MS.gene51542:CDS |
| AAGGAAAGAATCTATAAAGC+TGG | 0.515169 | 1.2:-8130517 | MS.gene51542:CDS |
| GAAGATGATTGTTCTTGAGC+CGG | 0.519349 | 1.2:+8128645 | None:intergenic |
| TTCGGTGTATATGATGGTCA+TGG | 0.519478 | 1.2:-8131621 | MS.gene51542:CDS |
| TGAGATGATGCGTGGTCAAA+GGG | 0.520080 | 1.2:-8131226 | MS.gene51542:CDS |
| TGCATCATCTGAACCAACAT+TGG | 0.520445 | 1.2:-8128610 | MS.gene51542:CDS |
| TCTTAGGTGATAAGGTAAAA+GGG | 0.520980 | 1.2:-8131185 | MS.gene51542:CDS |
| TTGGCGCCATCTTTGGCTGT+TGG | 0.522338 | 1.2:-8128735 | MS.gene51542:CDS |
| GCAAGGTTGGCGTGCAACAA+TGG | 0.523310 | 1.2:-8132145 | MS.gene51542:CDS |
| CTTCACTCTTGAGCACCTGT+TGG | 0.527508 | 1.2:+8131471 | None:intergenic |
| ACAGGAAACTAAACTTTCTG+AGG | 0.527738 | 1.2:-8128784 | MS.gene51542:intron |
| ACTGCAGACAAGTGCACCGC+CGG | 0.530448 | 1.2:-8128664 | MS.gene51542:CDS |
| CCAAAGATGGCGCCAAACAC+CGG | 0.530584 | 1.2:+8128742 | None:intergenic |
| GGCGGTGCACTTGTCTGCAG+TGG | 0.535694 | 1.2:+8128666 | None:intergenic |
| CAAGCAGTGCTTCCTGAAGT+TGG | 0.536448 | 1.2:+8130943 | None:intergenic |
| GCGTGGTCAAAGGGGATGGA+GGG | 0.539500 | 1.2:-8131217 | MS.gene51542:CDS |
| AAGAGTGAAGAATACATAGC+TGG | 0.546958 | 1.2:-8131458 | MS.gene51542:CDS |
| CCATCACCAACAGCCAAAGA+TGG | 0.553018 | 1.2:+8128729 | None:intergenic |
| TTTGTGAAAGAGTGCTAGAC+CGG | 0.555494 | 1.2:-8128761 | MS.gene51542:CDS |
| TCTTGAGCACCTGTTGGTGA+AGG | 0.555714 | 1.2:+8131477 | None:intergenic |
| TAAACTCATCTTCGTCATGA+AGG | 0.558190 | 1.2:+8129860 | None:intergenic |
| TGATGCGTGGTCAAAGGGGA+TGG | 0.565060 | 1.2:-8131221 | MS.gene51542:CDS |
| GTTTATCATCTATGCAAGGT+TGG | 0.584230 | 1.2:-8132158 | MS.gene51542:CDS |
| TTAATATTCTGCAGGTGACG+TGG | 0.584418 | 1.2:-8130159 | MS.gene51542:intron |
| TGCGTGGTCAAAGGGGATGG+AGG | 0.586051 | 1.2:-8131218 | MS.gene51542:CDS |
| GCATGCGGCGCATCTTGATG+TGG | 0.597024 | 1.2:-8131661 | MS.gene51542:CDS |
| ATGAGATGATGCGTGGTCAA+AGG | 0.604481 | 1.2:-8131227 | MS.gene51542:CDS |
| GGTCCATCAAAGTCTGAATG+AGG | 0.607139 | 1.2:+8130964 | None:intergenic |
| CGCTGCGTAATATCTAGGAA+TGG | 0.609929 | 1.2:-8130868 | MS.gene51542:CDS |
| TCCTGAGCTTGTGATTGAGA+AGG | 0.613540 | 1.2:-8130536 | MS.gene51542:CDS |
| TATGGTTTATCATCTATGCA+AGG | 0.620361 | 1.2:-8132162 | MS.gene51542:CDS |
| GAAAGAATCTATAAAGCTGG+TGG | 0.623293 | 1.2:-8130514 | MS.gene51542:CDS |
| TTTATAGTGATAGCTTGTGA+TGG | 0.644189 | 1.2:-8129841 | MS.gene51542:CDS |
| GATGATTGTTCTTGAGCCGG+CGG | 0.663671 | 1.2:+8128648 | None:intergenic |
| GGTGTATATGATGGTCATGG+AGG | 0.706196 | 1.2:-8131618 | MS.gene51542:intron |
| GAGATGATGCGTGGTCAAAG+GGG | 0.732571 | 1.2:-8131225 | MS.gene51542:CDS |
| AGAATGGATGAGATGATGCG+TGG | 0.759110 | 1.2:-8131234 | MS.gene51542:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATATTAAAACATATTAAA+TGG | + | chr1.2:8130668-8130687 | None:intergenic | 10.0% |
| !! | TTAAAAAAAAATAACATAAC+AGG | + | chr1.2:8130078-8130097 | None:intergenic | 10.0% |
| !! | TTATTTGAACTTATATAATT+TGG | - | chr1.2:8131277-8131296 | MS.gene51542:intron | 10.0% |
| !! | AAAAGAATTAAACAAATTCT+AGG | + | chr1.2:8130177-8130196 | None:intergenic | 15.0% |
| !! | AAATGACATTTATTAAAATG+GGG | + | chr1.2:8131059-8131078 | None:intergenic | 15.0% |
| !! | AGAAATGACATTTATTAAAA+TGG | + | chr1.2:8131061-8131080 | None:intergenic | 15.0% |
| !! | AGCATACAAAATAAAATAAT+AGG | + | chr1.2:8130530-8130549 | None:intergenic | 15.0% |
| !! | ATTACATTGAAATAATAACT+TGG | + | chr1.2:8131985-8132004 | None:intergenic | 15.0% |
| !! | CAAATTGTCATTATTAAATT+TGG | - | chr1.2:8131680-8131699 | MS.gene51542:intron | 15.0% |
| !! | CAAATTTAATAATGACAATT+TGG | + | chr1.2:8131682-8131701 | None:intergenic | 15.0% |
| !! | GAAATGACATTTATTAAAAT+GGG | + | chr1.2:8131060-8131079 | None:intergenic | 15.0% |
| !! | GTTATTATTTCAATGTAATT+TGG | - | chr1.2:8131986-8132005 | MS.gene51542:intron | 15.0% |
| !! | TTAAAAAAATCAAATTGTGA+AGG | - | chr1.2:8131794-8131813 | MS.gene51542:intron | 15.0% |
| !!! | ATCTTTTTATATTGTAAACA+GGG | - | chr1.2:8129850-8129869 | MS.gene51542:CDS | 15.0% |
| !!! | TTAGCATTAATTTGTATAAT+TGG | - | chr1.2:8130032-8130051 | MS.gene51542:intron | 15.0% |
| !!! | TTATTTTGTATGCTTTATTT+TGG | - | chr1.2:8130536-8130555 | MS.gene51542:CDS | 15.0% |
| !!! | TTTAATTCTTTTTCTTATGT+AGG | - | chr1.2:8130185-8130204 | MS.gene51542:intron | 15.0% |
| !! | AAAAAGATCAAATTACAGAA+TGG | + | chr1.2:8129838-8129857 | None:intergenic | 20.0% |
| !! | AAATTGAACAAAACTGTTAA+TGG | - | chr1.2:8131493-8131512 | MS.gene51542:CDS | 20.0% |
| !! | ATATTGTCTATTGAGAAATA+GGG | + | chr1.2:8130802-8130821 | None:intergenic | 20.0% |
| !! | GTAAAATTTGATTATTTGGA+AGG | - | chr1.2:8129242-8129261 | MS.gene51542:intron | 20.0% |
| !! | TAAAATCAAAACTTCACAAT+AGG | + | chr1.2:8129465-8129484 | None:intergenic | 20.0% |
| !! | TATAATAGTATTTGTAGTTC+TGG | + | chr1.2:8131579-8131598 | None:intergenic | 20.0% |
| !!! | AAAGTTAAAAGCATAATTGA+CGG | + | chr1.2:8129062-8129081 | None:intergenic | 20.0% |
| !!! | AATATGTTTTAATATTCTGC+AGG | - | chr1.2:8130671-8130690 | MS.gene51542:intron | 20.0% |
| !!! | AGAGTTTTTGAAAAAATTCA+AGG | + | chr1.2:8128884-8128903 | None:intergenic | 20.0% |
| !!! | ATATGTTAACACAAATTTTC+AGG | - | chr1.2:8129308-8129327 | MS.gene51542:intron | 20.0% |
| !!! | ATGCTTTTAACTTTGTTTAT+TGG | - | chr1.2:8129068-8129087 | MS.gene51542:intron | 20.0% |
| !!! | CAATTTGATTTTTTTAAGTG+TGG | + | chr1.2:8131791-8131810 | None:intergenic | 20.0% |
| !!! | GATCTTTTTATATTGTAAAC+AGG | - | chr1.2:8129849-8129868 | MS.gene51542:CDS | 20.0% |
| !!! | TCTTTTTATATTGTAAACAG+GGG | - | chr1.2:8129851-8129870 | MS.gene51542:CDS | 20.0% |
| !!! | TGAGTTATGAACTATTATTT+TGG | - | chr1.2:8129572-8129591 | MS.gene51542:intron | 20.0% |
| !!! | TGTTTTTGGAATTATATCAT+AGG | - | chr1.2:8130951-8130970 | MS.gene51542:CDS | 20.0% |
| ! | AAACTTACAATGTTTATGTC+TGG | + | chr1.2:8130758-8130777 | None:intergenic | 25.0% |
| ! | AATTTGATTATTTGGAAGGA+TGG | - | chr1.2:8129246-8129265 | MS.gene51542:intron | 25.0% |
| ! | AGGTTAACAAATAAACAGTT+CGG | + | chr1.2:8131647-8131666 | None:intergenic | 25.0% |
| ! | CATATTGTCTATTGAGAAAT+AGG | + | chr1.2:8130803-8130822 | None:intergenic | 25.0% |
| ! | CTAAGGTTAAAACTGAATAA+AGG | + | chr1.2:8130440-8130459 | None:intergenic | 25.0% |
| ! | GAAAAATTTATCACAAGTTC+AGG | - | chr1.2:8129519-8129538 | MS.gene51542:intron | 25.0% |
| ! | GAAAATGACAATCTTAGATA+TGG | - | chr1.2:8128658-8128677 | MS.gene51542:CDS | 25.0% |
| ! | GGAGGTAAAATTTGATTATT+TGG | - | chr1.2:8129238-8129257 | MS.gene51542:intron | 25.0% |
| ! | TTTATTAAAATGGGGAATTG+TGG | + | chr1.2:8131051-8131070 | None:intergenic | 25.0% |
| !! | AATTCTTTTTCTTACGTTTC+AGG | - | chr1.2:8131085-8131104 | MS.gene51542:intron | 25.0% |
| !! | AGTAATGATTCTTTTCAGTT+CGG | + | chr1.2:8131458-8131477 | None:intergenic | 25.0% |
| !! | AGTTTTTGTCAAAATCATGA+TGG | - | chr1.2:8128994-8129013 | MS.gene51542:intron | 25.0% |
| !! | ATTCTTTTTCTTACGTTTCA+GGG | - | chr1.2:8131086-8131105 | MS.gene51542:intron | 25.0% |
| !! | CTATTTCTCAATAGACAATA+TGG | - | chr1.2:8130801-8130820 | MS.gene51542:intron | 25.0% |
| !! | TCTGAAAACTTTTCAGTTTT+AGG | + | chr1.2:8128631-8128650 | None:intergenic | 25.0% |
| !!! | AGGAAGTTTCCTTTTATTTT+CGG | + | chr1.2:8130510-8130529 | None:intergenic | 25.0% |
| !!! | ATTTTGGTTATTATGCAGAA+TGG | - | chr1.2:8129588-8129607 | MS.gene51542:intron | 25.0% |
| !!! | CTTTTTTGTTACTTTCATAG+TGG | + | chr1.2:8129552-8129571 | None:intergenic | 25.0% |
| !!! | GACATAATTTTTTCTGACTA+TGG | - | chr1.2:8130238-8130257 | MS.gene51542:intron | 25.0% |
| !!! | TTAACACAAATTTTCAGGTA+AGG | - | chr1.2:8129313-8129332 | MS.gene51542:intron | 25.0% |
| !!! | TTTTGTATGCTTTATTTTGG+AGG | - | chr1.2:8130539-8130558 | MS.gene51542:CDS | 25.0% |
| !!! | TTTTTAAGTGTGGTTTGATT+CGG | + | chr1.2:8131781-8131800 | None:intergenic | 25.0% |
| AAATGCTTAGTCAAGAGTTT+CGG | - | chr1.2:8130838-8130857 | MS.gene51542:intron | 30.0% | |
| AACTTGGATCATTATGCTTA+GGG | + | chr1.2:8131969-8131988 | None:intergenic | 30.0% | |
| AAGGAAAGAATCTATAAAGC+TGG | - | chr1.2:8130321-8130340 | MS.gene51542:intron | 30.0% | |
| ACTAAGATTATCATAGCTCA+AGG | + | chr1.2:8130484-8130503 | None:intergenic | 30.0% | |
| ATGCTTAGGGAAAAAAAACT+TGG | + | chr1.2:8131956-8131975 | None:intergenic | 30.0% | |
| ATTGTAGAAGCAAGTATATG+TGG | - | chr1.2:8128828-8128847 | MS.gene51542:intron | 30.0% | |
| CGATAACATGACAATGATAT+TGG | - | chr1.2:8132135-8132154 | MS.gene51542:intron | 30.0% | |
| CTTAGTGTACCGAAAATAAA+AGG | - | chr1.2:8130498-8130517 | MS.gene51542:CDS | 30.0% | |
| GAATGATTGAAGGATTGATT+CGG | - | chr1.2:8129683-8129702 | MS.gene51542:intron | 30.0% | |
| GTACAAAATCTACCAATTGT+TGG | + | chr1.2:8131125-8131144 | None:intergenic | 30.0% | |
| TAACTTGGATCATTATGCTT+AGG | + | chr1.2:8131970-8131989 | None:intergenic | 30.0% | |
| TACAATGTTTATGTCTGGAT+TGG | + | chr1.2:8130753-8130772 | None:intergenic | 30.0% | |
| TATGGTTTATCATCTATGCA+AGG | - | chr1.2:8128676-8128695 | MS.gene51542:CDS | 30.0% | |
| TCCTTATTATCATTGCTTCT+GGG | + | chr1.2:8129712-8129731 | None:intergenic | 30.0% | |
| TCTTAGGTGATAAGGTAAAA+GGG | - | chr1.2:8129653-8129672 | MS.gene51542:intron | 30.0% | |
| TGAATAACAAGGACTGTTTA+TGG | - | chr1.2:8131408-8131427 | MS.gene51542:intron | 30.0% | |
| TTAAATCTTGCAAGAGCTAT+AGG | - | chr1.2:8130378-8130397 | MS.gene51542:intron | 30.0% | |
| TTCATATACAAGACAGTACT+AGG | + | chr1.2:8131254-8131273 | None:intergenic | 30.0% | |
| TTCGGTTTAACAGTTCAATT+TGG | - | chr1.2:8131901-8131920 | MS.gene51542:intron | 30.0% | |
| TTGAAGAAGATGCACTTATA+TGG | - | chr1.2:8130630-8130649 | MS.gene51542:intron | 30.0% | |
| ! | ACTGAAAAGTTTTCAGAAGA+TGG | - | chr1.2:8128634-8128653 | MS.gene51542:CDS | 30.0% |
| ! | AGTGTGATTGAATTGTGTTT+TGG | - | chr1.2:8129020-8129039 | MS.gene51542:intron | 30.0% |
| ! | GTGTGATTGAATTGTGTTTT+GGG | - | chr1.2:8129021-8129040 | MS.gene51542:intron | 30.0% |
| ! | GTTCACAGTTCTTTTCTTTT+TGG | - | chr1.2:8131873-8131892 | MS.gene51542:intron | 30.0% |
| ! | TGTGATTGAATTGTGTTTTG+GGG | - | chr1.2:8129022-8129041 | MS.gene51542:intron | 30.0% |
| ! | TTAAATTTGGCTCAAATTGC+TGG | - | chr1.2:8131693-8131712 | MS.gene51542:intron | 30.0% |
| ! | TTTATAGTGATAGCTTGTGA+TGG | - | chr1.2:8130997-8131016 | MS.gene51542:intron | 30.0% |
| !!! | CTGAATGAGAGTTTTGTTTT+TGG | - | chr1.2:8130937-8130956 | MS.gene51542:CDS | 30.0% |
| !!! | TTTTTTCTTTTGCTAGCATG+CGG | - | chr1.2:8129162-8129181 | MS.gene51542:intron | 30.0% |
| AACAAGGACTGTTTATGGTT+TGG | - | chr1.2:8131413-8131432 | MS.gene51542:intron | 35.0% | |
| AAGAGTGAAGAATACATAGC+TGG | - | chr1.2:8129380-8129399 | MS.gene51542:intron | 35.0% | |
| AAGCTTCAACAGAATCATGA+TGG | + | chr1.2:8128966-8128985 | None:intergenic | 35.0% | |
| ACAGGAAACTAAACTTTCTG+AGG | - | chr1.2:8132054-8132073 | MS.gene51542:intron | 35.0% | |
| ATAAGGACCAAAGTGATGAT+TGG | - | chr1.2:8129725-8129744 | MS.gene51542:CDS | 35.0% | |
| ATATACACCGAAAAACGAAG+TGG | + | chr1.2:8129209-8129228 | None:intergenic | 35.0% | |
| ATTAGCAGTCTTAGGTGATA+AGG | - | chr1.2:8129645-8129664 | MS.gene51542:intron | 35.0% | |
| ATTCATGCAGGACGAATTAA+TGG | - | chr1.2:8130351-8130370 | MS.gene51542:intron | 35.0% | |
| CAATTTGGTACACAAAGCAA+AGG | + | chr1.2:8131667-8131686 | None:intergenic | 35.0% | |
| GAAAGAATCTATAAAGCTGG+TGG | - | chr1.2:8130324-8130343 | MS.gene51542:intron | 35.0% | |
| GATAAGGTAAAAGGGTTCAA+TGG | - | chr1.2:8129661-8129680 | MS.gene51542:intron | 35.0% | |
| GGTATAAAGGTTCCAATCAT+CGG | - | chr1.2:8131534-8131553 | MS.gene51542:intron | 35.0% | |
| GTACTTGTATGCATGTTGTT+TGG | - | chr1.2:8130573-8130592 | MS.gene51542:intron | 35.0% | |
| GTCCTTATTATCATTGCTTC+TGG | + | chr1.2:8129713-8129732 | None:intergenic | 35.0% | |
| GTCTTAGGTGATAAGGTAAA+AGG | - | chr1.2:8129652-8129671 | MS.gene51542:intron | 35.0% | |
| GTTTATCATCTATGCAAGGT+TGG | - | chr1.2:8128680-8128699 | MS.gene51542:CDS | 35.0% | |
| TAAACTCATCTTCGTCATGA+AGG | + | chr1.2:8130981-8131000 | None:intergenic | 35.0% | |
| TAAGGACCAAAGTGATGATT+GGG | - | chr1.2:8129726-8129745 | MS.gene51542:CDS | 35.0% | |
| TCAATTGAAGTTCTTGTGTG+TGG | - | chr1.2:8128732-8128751 | MS.gene51542:CDS | 35.0% | |
| TCCCAGAAGCAATGATAATA+AGG | - | chr1.2:8129708-8129727 | MS.gene51542:CDS | 35.0% | |
| TCGTTCGAAAATGTACAGTT+TGG | + | chr1.2:8131607-8131626 | None:intergenic | 35.0% | |
| TCTTATGTAGGCTATGTGTT+AGG | - | chr1.2:8130197-8130216 | MS.gene51542:intron | 35.0% | |
| TGTGCGTTACTTGAATAACA+AGG | - | chr1.2:8131397-8131416 | MS.gene51542:intron | 35.0% | |
| TTCATGCAGGACGAATTAAT+GGG | - | chr1.2:8130352-8130371 | MS.gene51542:intron | 35.0% | |
| ! | AATGTTTATGTCTGGATTGG+CGG | + | chr1.2:8130750-8130769 | None:intergenic | 35.0% |
| ! | ACTATGGATTTTTGTTCTGC+AGG | - | chr1.2:8130254-8130273 | MS.gene51542:intron | 35.0% |
| ! | GATCATTCCTACCTTTTCAA+AGG | + | chr1.2:8129752-8129771 | None:intergenic | 35.0% |
| ! | TGATTCTTTTCAGTTCGGTT+TGG | + | chr1.2:8131453-8131472 | None:intergenic | 35.0% |
| !! | CAGTTCTTTTCTTTTTGGTG+TGG | - | chr1.2:8131878-8131897 | MS.gene51542:intron | 35.0% |
| !! | CGATACACTTTTTATCTCAC+AGG | - | chr1.2:8132036-8132055 | MS.gene51542:intron | 35.0% |
| !! | CTTTTCTTTTTGGTGTGGTT+CGG | - | chr1.2:8131883-8131902 | MS.gene51542:intron | 35.0% |
| !! | GATTCATCCACTTCGTTTTT+CGG | - | chr1.2:8129199-8129218 | MS.gene51542:intron | 35.0% |
| !! | TCGTTTTTCGGTGTATATGA+TGG | - | chr1.2:8129211-8129230 | MS.gene51542:intron | 35.0% |
| !! | TTTTAAGTACTTGTCTGCAG+TGG | - | chr1.2:8128915-8128934 | MS.gene51542:intron | 35.0% |
| !!! | ACACAAATTTTCAGGTAAGG+CGG | - | chr1.2:8129316-8129335 | MS.gene51542:intron | 35.0% |
| !!! | CTCTTACGAAAGCATTTTTC+AGG | - | chr1.2:8129417-8129436 | MS.gene51542:intron | 35.0% |
| AATAAAGGAAGCTCACTTGC+CGG | + | chr1.2:8130425-8130444 | None:intergenic | 40.0% | |
| ATGTAGGCTATGTGTTAGGT+AGG | - | chr1.2:8130201-8130220 | MS.gene51542:intron | 40.0% | |
| ATTCACGCTGCGTAATATCT+AGG | - | chr1.2:8129965-8129984 | MS.gene51542:intron | 40.0% | |
| CAGCATTCGCAACAAAAAGT+AGG | + | chr1.2:8129942-8129961 | None:intergenic | 40.0% | |
| CATAACACAGAACCGATGAT+TGG | + | chr1.2:8131549-8131568 | None:intergenic | 40.0% | |
| CATAGTACATACCTACCTAC+CGG | - | chr1.2:8130403-8130422 | MS.gene51542:intron | 40.0% | |
| CGTAATATCTAGGAATGGTC+AGG | - | chr1.2:8129975-8129994 | MS.gene51542:intron | 40.0% | |
| GAAGATGATTGTTCTTGAGC+CGG | + | chr1.2:8132196-8132215 | None:intergenic | 40.0% | |
| GAATACATAGCTGGAGATGT+TGG | - | chr1.2:8129389-8129408 | MS.gene51542:intron | 40.0% | |
| GGGTTCAATGGAATGATTGA+AGG | - | chr1.2:8129673-8129692 | MS.gene51542:intron | 40.0% | |
| TCTGCGCATTAACTGATGTT+AGG | - | chr1.2:8131740-8131759 | MS.gene51542:intron | 40.0% | |
| TGCATCATCTGAACCAACAT+TGG | - | chr1.2:8132228-8132247 | MS.gene51542:CDS | 40.0% | |
| TGGAACCTTTATACCAGTTC+TGG | + | chr1.2:8131529-8131548 | None:intergenic | 40.0% | |
| TGTACGTCAAGAACTTCTCT+TGG | - | chr1.2:8131140-8131159 | MS.gene51542:CDS | 40.0% | |
| TTAATATTCTGCAGGTGACG+TGG | - | chr1.2:8130679-8130698 | MS.gene51542:intron | 40.0% | |
| TTGAAGTTCTTGTGTGTGGA+TGG | - | chr1.2:8128736-8128755 | MS.gene51542:CDS | 40.0% | |
| TTGCCTATCAAGCCAACAAT+TGG | - | chr1.2:8131110-8131129 | MS.gene51542:CDS | 40.0% | |
| ! | AAGTTTGCTCCATTGCAAGT+CGG | - | chr1.2:8130772-8130791 | MS.gene51542:intron | 40.0% |
| ! | CCTTTATACCAGTTCTGGTT+CGG | + | chr1.2:8131524-8131543 | None:intergenic | 40.0% |
| ! | TGATAGCTTGTGATGGCATA+TGG | - | chr1.2:8131004-8131023 | MS.gene51542:intron | 40.0% |
| ! | TGATGATTGGGCCTTTGAAA+AGG | - | chr1.2:8129738-8129757 | MS.gene51542:intron | 40.0% |
| ! | TTCGGTGTATATGATGGTCA+TGG | - | chr1.2:8129217-8129236 | MS.gene51542:intron | 40.0% |
| !! | CTACCAATTGTTGGCTTGAT+AGG | + | chr1.2:8131116-8131135 | None:intergenic | 40.0% |
| !! | TTTGTGAAAGAGTGCTAGAC+CGG | - | chr1.2:8132077-8132096 | MS.gene51542:intron | 40.0% |
| !!! | CTACTTTTTGTTGCGAATGC+TGG | - | chr1.2:8129940-8129959 | MS.gene51542:intron | 40.0% |
| !!! | TGCTTTATTTTGGAGGCAAG+AGG | - | chr1.2:8130546-8130565 | MS.gene51542:CDS | 40.0% |
| !!! | TTTATTTTGGAGGCAAGAGG+AGG | - | chr1.2:8130549-8130568 | MS.gene51542:CDS | 40.0% |
| AGAATGGATGAGATGATGCG+TGG | - | chr1.2:8129604-8129623 | MS.gene51542:intron | 45.0% | |
| ATGAGATGATGCGTGGTCAA+AGG | - | chr1.2:8129611-8129630 | MS.gene51542:intron | 45.0% | |
| CAAAGGCCCAATCATCACTT+TGG | + | chr1.2:8129735-8129754 | None:intergenic | 45.0% | |
| CCGAACCAGAACTGGTATAA+AGG | - | chr1.2:8131521-8131540 | MS.gene51542:intron | 45.0% | |
| CGCTGCGTAATATCTAGGAA+TGG | - | chr1.2:8129970-8129989 | MS.gene51542:intron | 45.0% | |
| GCTTGTGATGGCATATGGTA+TGG | - | chr1.2:8131009-8131028 | MS.gene51542:intron | 45.0% | |
| GGTCCATCAAAGTCTGAATG+AGG | + | chr1.2:8129877-8129896 | None:intergenic | 45.0% | |
| GGTGTATATGATGGTCATGG+AGG | - | chr1.2:8129220-8129239 | MS.gene51542:intron | 45.0% | |
| GTTCATGAACTGAACTGAGC+TGG | + | chr1.2:8131852-8131871 | None:intergenic | 45.0% | |
| TAAGTACTTGTCTGCAGTGG+CGG | - | chr1.2:8128918-8128937 | MS.gene51542:intron | 45.0% | |
| TCCTGAGCTTGTGATTGAGA+AGG | - | chr1.2:8130302-8130321 | MS.gene51542:intron | 45.0% | |
| TCCTTCTCAATCACAAGCTC+AGG | + | chr1.2:8130306-8130325 | None:intergenic | 45.0% | |
| TGAGATGATGCGTGGTCAAA+GGG | - | chr1.2:8129612-8129631 | MS.gene51542:intron | 45.0% | |
| TGCATGTCTCGTGATTTGAG+AGG | - | chr1.2:8130121-8130140 | MS.gene51542:CDS | 45.0% | |
| TGCTGGCCATCACAAGTTAA+AGG | - | chr1.2:8131710-8131729 | MS.gene51542:intron | 45.0% | |
| TGGAGGGAATTAGCAGTCTT+AGG | - | chr1.2:8129637-8129656 | MS.gene51542:intron | 45.0% | |
| TTCAAGTAACGCACATCAGC+AGG | + | chr1.2:8131392-8131411 | None:intergenic | 45.0% | |
| ! | GACTTTGATGGACCAACTTC+AGG | - | chr1.2:8129883-8129902 | MS.gene51542:intron | 45.0% |
| ! | GAGGGGAATGTCACTTACTA+AGG | + | chr1.2:8130457-8130476 | None:intergenic | 45.0% |
| ! | GATTGGGCCTTTGAAAAGGT+AGG | - | chr1.2:8129742-8129761 | MS.gene51542:intron | 45.0% |
| ! | TAGGGTAATCCGACTTGCAA+TGG | + | chr1.2:8130784-8130803 | None:intergenic | 45.0% |
| !! | CGAGTGCCTTTAACTTGTGA+TGG | + | chr1.2:8131719-8131738 | None:intergenic | 45.0% |
| !! | GTGTGGTTTGATTCGGTCTT+TGG | + | chr1.2:8131774-8131793 | None:intergenic | 45.0% |
| !!! | GCTGGTGGTTTTATTCATGC+AGG | - | chr1.2:8130339-8130358 | MS.gene51542:intron | 45.0% |
| ATCATAGCTCAAGGCGCAGA+GGG | + | chr1.2:8130475-8130494 | None:intergenic | 50.0% | |
| CAAGCAGTGCTTCCTGAAGT+TGG | + | chr1.2:8129898-8129917 | None:intergenic | 50.0% | |
| CCATCACCAACAGCCAAAGA+TGG | + | chr1.2:8132112-8132131 | None:intergenic | 50.0% | |
| CTTCACTCTTGAGCACCTGT+TGG | + | chr1.2:8129370-8129389 | None:intergenic | 50.0% | |
| GAGATGATGCGTGGTCAAAG+GGG | - | chr1.2:8129613-8129632 | MS.gene51542:intron | 50.0% | |
| GATGATTGTTCTTGAGCCGG+CGG | + | chr1.2:8132193-8132212 | None:intergenic | 50.0% | |
| GGGCCTCATTCAGACTTTGA+TGG | - | chr1.2:8129871-8129890 | MS.gene51542:intron | 50.0% | |
| TATCATAGCTCAAGGCGCAG+AGG | + | chr1.2:8130476-8130495 | None:intergenic | 50.0% | |
| ! | CCATCTTTGGCTGTTGGTGA+TGG | - | chr1.2:8132109-8132128 | MS.gene51542:intron | 50.0% |
| ! | TCTTGAGCACCTGTTGGTGA+AGG | + | chr1.2:8129364-8129383 | None:intergenic | 50.0% |
| ! | TGGTTTGTCCGAACCAGAAC+TGG | - | chr1.2:8131513-8131532 | MS.gene51542:intron | 50.0% |
| !! | AAGAGTGCTAGACCGGTGTT+TGG | - | chr1.2:8132084-8132103 | MS.gene51542:intron | 50.0% |
| AAGCTCACTTGCCGGTAGGT+AGG | + | chr1.2:8130417-8130436 | None:intergenic | 55.0% | |
| AAGGAAGCTCACTTGCCGGT+AGG | + | chr1.2:8130421-8130440 | None:intergenic | 55.0% | |
| CCAAAGATGGCGCCAAACAC+CGG | + | chr1.2:8132099-8132118 | None:intergenic | 55.0% | |
| GCAAGGTTGGCGTGCAACAA+TGG | - | chr1.2:8128693-8128712 | MS.gene51542:CDS | 55.0% | |
| TCATAGCTCAAGGCGCAGAG+GGG | + | chr1.2:8130474-8130493 | None:intergenic | 55.0% | |
| TGATGCGTGGTCAAAGGGGA+TGG | - | chr1.2:8129617-8129636 | MS.gene51542:intron | 55.0% | |
| TGCCAAGCACCTTCACCAAC+AGG | - | chr1.2:8129352-8129371 | MS.gene51542:intron | 55.0% | |
| TTGGCGCCATCTTTGGCTGT+TGG | - | chr1.2:8132103-8132122 | MS.gene51542:intron | 55.0% | |
| !! | CACCTGTTGGTGAAGGTGCT+TGG | + | chr1.2:8129357-8129376 | None:intergenic | 55.0% |
| ACTGCAGACAAGTGCACCGC+CGG | - | chr1.2:8132174-8132193 | MS.gene51542:CDS | 60.0% | |
| CCGGTGTTTGGCGCCATCTT+TGG | - | chr1.2:8132096-8132115 | MS.gene51542:intron | 60.0% | |
| GCATGCGGCGCATCTTGATG+TGG | - | chr1.2:8129177-8129196 | MS.gene51542:intron | 60.0% | |
| GCGTGGTCAAAGGGGATGGA+GGG | - | chr1.2:8129621-8129640 | MS.gene51542:intron | 60.0% | |
| TGCGTGGTCAAAGGGGATGG+AGG | - | chr1.2:8129620-8129639 | MS.gene51542:intron | 60.0% | |
| GGCGGTGCACTTGTCTGCAG+TGG | + | chr1.2:8132175-8132194 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 8128599 | 8132261 | 8128599 | ID=MS.gene51542 |
| chr1.2 | mRNA | 8128599 | 8132261 | 8128599 | ID=MS.gene51542.t1;Parent=MS.gene51542 |
| chr1.2 | exon | 8132137 | 8132261 | 8132137 | ID=MS.gene51542.t1.exon1;Parent=MS.gene51542.t1 |
| chr1.2 | CDS | 8132137 | 8132261 | 8132137 | ID=cds.MS.gene51542.t1;Parent=MS.gene51542.t1 |
| chr1.2 | exon | 8131619 | 8131682 | 8131619 | ID=MS.gene51542.t1.exon2;Parent=MS.gene51542.t1 |
| chr1.2 | CDS | 8131619 | 8131682 | 8131619 | ID=cds.MS.gene51542.t1;Parent=MS.gene51542.t1 |
| chr1.2 | exon | 8131422 | 8131530 | 8131422 | ID=MS.gene51542.t1.exon3;Parent=MS.gene51542.t1 |
| chr1.2 | CDS | 8131422 | 8131530 | 8131422 | ID=cds.MS.gene51542.t1;Parent=MS.gene51542.t1 |
| chr1.2 | exon | 8131101 | 8131254 | 8131101 | ID=MS.gene51542.t1.exon4;Parent=MS.gene51542.t1 |
| chr1.2 | CDS | 8131101 | 8131254 | 8131101 | ID=cds.MS.gene51542.t1;Parent=MS.gene51542.t1 |
| chr1.2 | exon | 8130864 | 8130989 | 8130864 | ID=MS.gene51542.t1.exon5;Parent=MS.gene51542.t1 |
| chr1.2 | CDS | 8130864 | 8130989 | 8130864 | ID=cds.MS.gene51542.t1;Parent=MS.gene51542.t1 |
| chr1.2 | exon | 8130461 | 8130584 | 8130461 | ID=MS.gene51542.t1.exon6;Parent=MS.gene51542.t1 |
| chr1.2 | CDS | 8130461 | 8130584 | 8130461 | ID=cds.MS.gene51542.t1;Parent=MS.gene51542.t1 |
| chr1.2 | exon | 8130091 | 8130167 | 8130091 | ID=MS.gene51542.t1.exon7;Parent=MS.gene51542.t1 |
| chr1.2 | CDS | 8130091 | 8130167 | 8130091 | ID=cds.MS.gene51542.t1;Parent=MS.gene51542.t1 |
| chr1.2 | exon | 8129835 | 8129887 | 8129835 | ID=MS.gene51542.t1.exon8;Parent=MS.gene51542.t1 |
| chr1.2 | CDS | 8129835 | 8129887 | 8129835 | ID=cds.MS.gene51542.t1;Parent=MS.gene51542.t1 |
| chr1.2 | exon | 8129699 | 8129753 | 8129699 | ID=MS.gene51542.t1.exon9;Parent=MS.gene51542.t1 |
| chr1.2 | CDS | 8129699 | 8129753 | 8129699 | ID=cds.MS.gene51542.t1;Parent=MS.gene51542.t1 |
| chr1.2 | exon | 8128599 | 8128802 | 8128599 | ID=MS.gene51542.t1.exon10;Parent=MS.gene51542.t1 |
| chr1.2 | CDS | 8128599 | 8128802 | 8128599 | ID=cds.MS.gene51542.t1;Parent=MS.gene51542.t1 |
| Gene Sequence |
| Protein sequence |
