Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51570.t1 | XP_003588703.1 | 95.8 | 428 | 18 | 0 | 1 | 428 | 1 | 428 | 1.20E-240 | 842 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51570.t1 | H1ZZA4 | 24.9 | 382 | 237 | 13 | 11 | 383 | 8 | 348 | 7.1e-16 | 86.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51570.t1 | G7I6C9 | 95.8 | 428 | 18 | 0 | 1 | 428 | 1 | 428 | 8.6e-241 | 842.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene51570 | 0.822784 | 1.97E-53 | -1.69E-46 |
| MS.gene049915 | MS.gene51570 | 0.832142 | 1.12E-55 | -1.69E-46 |
| MS.gene050301 | MS.gene51570 | 0.811044 | 8.53E-51 | -1.69E-46 |
| MS.gene050330 | MS.gene51570 | -0.834651 | 2.65E-56 | -1.69E-46 |
| MS.gene050438 | MS.gene51570 | 0.833822 | 4.28E-56 | -1.69E-46 |
| MS.gene050558 | MS.gene51570 | 0.830118 | 3.52E-55 | -1.69E-46 |
| MS.gene050560 | MS.gene51570 | 0.808831 | 2.55E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene51570 | 0.822755 | 2.00E-53 | -1.69E-46 |
| MS.gene050721 | MS.gene51570 | 0.824103 | 9.68E-54 | -1.69E-46 |
| MS.gene050724 | MS.gene51570 | 0.832203 | 1.08E-55 | -1.69E-46 |
| MS.gene050820 | MS.gene51570 | 0.80166 | 8.11E-49 | -1.69E-46 |
| MS.gene05119 | MS.gene51570 | -0.809042 | 2.30E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene51570 | 0.808154 | 3.56E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene51570 | 0.802541 | 5.34E-49 | -1.69E-46 |
| MS.gene052207 | MS.gene51570 | 0.8037 | 3.08E-49 | -1.69E-46 |
| MS.gene053184 | MS.gene51570 | 0.809978 | 1.45E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene51570 | 0.841823 | 3.76E-58 | -1.69E-46 |
| MS.gene054473 | MS.gene51570 | 0.801773 | 7.69E-49 | -1.69E-46 |
| MS.gene054667 | MS.gene51570 | 0.8078 | 4.23E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene51570 | 0.826185 | 3.12E-54 | -1.69E-46 |
| MS.gene057121 | MS.gene51570 | 0.84157 | 4.39E-58 | -1.69E-46 |
| MS.gene057754 | MS.gene51570 | 0.807639 | 4.58E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene51570 | 0.801903 | 7.23E-49 | -1.69E-46 |
| MS.gene058739 | MS.gene51570 | 0.805614 | 1.23E-49 | -1.69E-46 |
| MS.gene059124 | MS.gene51570 | 0.812802 | 3.53E-51 | -1.69E-46 |
| MS.gene059128 | MS.gene51570 | 0.816995 | 4.15E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene51570 | 0.805379 | 1.37E-49 | -1.69E-46 |
| MS.gene060314 | MS.gene51570 | 0.804613 | 1.99E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51570.t1 | MTR_1g011690 | 95.794 | 428 | 18 | 0 | 1 | 428 | 1 | 428 | 0.0 | 847 |
| MS.gene51570.t1 | MTR_1g011700 | 71.163 | 430 | 88 | 5 | 1 | 428 | 1 | 396 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51570.t1 | AT5G11330 | 65.459 | 414 | 133 | 3 | 6 | 419 | 4 | 407 | 0.0 | 551 |
| MS.gene51570.t1 | AT5G11330 | 66.932 | 251 | 82 | 1 | 6 | 256 | 4 | 253 | 4.22e-122 | 355 |
Find 102 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCAAATCATTCAATCT+TGG | 0.267009 | 1.4:+8863790 | MS.gene51570:CDS |
| AAGAAGGCATACCCTGATTT+AGG | 0.281482 | 1.4:+8865145 | MS.gene51570:CDS |
| TTGTCATGTTTGTGCTTCTA+AGG | 0.298117 | 1.4:-8866212 | None:intergenic |
| AACAATCTTACCTTTACTTC+AGG | 0.303617 | 1.4:-8865268 | None:intergenic |
| TAAAATCAGGGAGATATTTC+CGG | 0.304253 | 1.4:-8864572 | None:intergenic |
| CTCCTCTTTCCTTGCAGACT+TGG | 0.323759 | 1.4:-8866415 | None:intergenic |
| ATCCCTTGGAGAAGATATTC+TGG | 0.324905 | 1.4:+8866139 | MS.gene51570:CDS |
| GGATCAAAAGGATCTCTATC+AGG | 0.331457 | 1.4:-8866393 | None:intergenic |
| CTAAGGTAGTGAGGCGTAGT+AGG | 0.337106 | 1.4:-8866195 | None:intergenic |
| AGTCCTACTGGTGCAGGTCT+TGG | 0.342814 | 1.4:+8863753 | MS.gene51570:CDS |
| CCTCCAACAATCACTGCTTT+TGG | 0.355115 | 1.4:-8863639 | None:intergenic |
| ATAGTGAGAAGAAGGTTAAT+TGG | 0.367261 | 1.4:+8864310 | MS.gene51570:CDS |
| ACAGACCTTAGTTTAAAATC+AGG | 0.374969 | 1.4:-8864585 | None:intergenic |
| TTTCCATGTTGCAAATGAAA+AGG | 0.377089 | 1.4:+8864449 | MS.gene51570:CDS |
| TAGGCAAATGCATAGAGAAA+TGG | 0.381893 | 1.4:+8866253 | MS.gene51570:CDS |
| AAACTTCAGAGCAGCACATT+GGG | 0.385934 | 1.4:+8864356 | MS.gene51570:CDS |
| TGCCCTTATCTTAGCTGGTT+GGG | 0.389461 | 1.4:+8863689 | MS.gene51570:CDS |
| CTTACCTTTACTTCAGGCTC+TGG | 0.395657 | 1.4:-8865262 | None:intergenic |
| ATATTAGATGCAGCGGTGTT+AGG | 0.401522 | 1.4:+8866234 | MS.gene51570:CDS |
| CTTGCAGACTTGGGATCAAA+AGG | 0.404489 | 1.4:-8866405 | None:intergenic |
| CAGGCTATTGTGCTTGGAGA+GGG | 0.406475 | 1.4:+8865074 | MS.gene51570:CDS |
| TGAAAAGCTTGAATCGGCTT+TGG | 0.407533 | 1.4:+8866281 | MS.gene51570:CDS |
| TCCTCTTTCCTTGCAGACTT+GGG | 0.408687 | 1.4:-8866414 | None:intergenic |
| TGCAAGGAAAGAGGAGTGTC+AGG | 0.422711 | 1.4:+8866422 | MS.gene51570:CDS |
| AAAACCACCTCACCTCCAAC+TGG | 0.426284 | 1.4:+8863729 | MS.gene51570:CDS |
| AGAACTTGCTTGGAAGTAAC+TGG | 0.427168 | 1.4:-8866327 | None:intergenic |
| AGGCAAATGCATAGAGAAAT+GGG | 0.438389 | 1.4:+8866254 | MS.gene51570:CDS |
| TTGTACTTTGACTTGGCCTC+AGG | 0.443786 | 1.4:+8865175 | MS.gene51570:CDS |
| GCACATTGGGGTGATCTTCA+TGG | 0.447172 | 1.4:+8864369 | MS.gene51570:CDS |
| GCACATGCCCTTATCTTAGC+TGG | 0.449723 | 1.4:+8863684 | MS.gene51570:CDS |
| TTCATGACCTTTGCTAACTC+AGG | 0.460263 | 1.4:-8866075 | None:intergenic |
| CGGTCGCATAAAACAAGGTC+TGG | 0.461955 | 1.4:+8866365 | MS.gene51570:CDS |
| ATGCCCTTATCTTAGCTGGT+TGG | 0.465754 | 1.4:+8863688 | MS.gene51570:CDS |
| CATCCCAACCAGCTAAGATA+AGG | 0.467240 | 1.4:-8863692 | None:intergenic |
| ACTTTAGCCTTTACTATGAC+AGG | 0.468065 | 1.4:-8864474 | None:intergenic |
| ATTGAATGATTTGAAGAGAG+AGG | 0.470374 | 1.4:-8863785 | None:intergenic |
| AAGGCTAAAGTTGTGAAAAC+CGG | 0.472300 | 1.4:+8864486 | MS.gene51570:CDS |
| TGCCTTCTTGATACCTGTGA+TGG | 0.479221 | 1.4:-8865131 | None:intergenic |
| AAACCAAAAGCAGTGATTGT+TGG | 0.479656 | 1.4:+8863636 | MS.gene51570:CDS |
| ATTGTTGGAGGTAGCATTGG+AGG | 0.480364 | 1.4:+8863651 | MS.gene51570:CDS |
| CCTTGCATGAAGAACTTGCT+TGG | 0.482633 | 1.4:-8866337 | None:intergenic |
| GGTATTCAGGCTATTGTGCT+TGG | 0.482760 | 1.4:+8865068 | MS.gene51570:intron |
| TTCCATGTTGCAAATGAAAA+GGG | 0.483954 | 1.4:+8864450 | MS.gene51570:CDS |
| CCTCCAACTGGAAGTCCTAC+TGG | 0.484222 | 1.4:+8863741 | MS.gene51570:CDS |
| ATTCTGGGACAATGTGGTAT+TGG | 0.484504 | 1.4:+8866155 | MS.gene51570:CDS |
| CATATATGATAGTGATCCCT+TGG | 0.487961 | 1.4:+8866125 | MS.gene51570:CDS |
| TTGAATGATTTGAAGAGAGA+GGG | 0.490073 | 1.4:-8863784 | None:intergenic |
| GATTTGCTTGTTGCTGCAGA+TGG | 0.492918 | 1.4:+8864531 | MS.gene51570:CDS |
| GGAAGCTGAAAAGCTTGAAT+CGG | 0.497109 | 1.4:+8866275 | MS.gene51570:CDS |
| GTGATTGTTGGAGGTAGCAT+TGG | 0.503861 | 1.4:+8863648 | MS.gene51570:CDS |
| ATCCCAACCAGCTAAGATAA+GGG | 0.514118 | 1.4:-8863691 | None:intergenic |
| TCATCCACTAACTATTGATC+AGG | 0.514137 | 1.4:+8863848 | MS.gene51570:CDS |
| GTGGATGAGTGGTGTTGTGT+AGG | 0.518746 | 1.4:-8863833 | None:intergenic |
| TAAAATCTCAATAACCTCTC+CGG | 0.520942 | 1.4:-8864505 | None:intergenic |
| TCAGCCAGAGCCTGAAGTAA+AGG | 0.521249 | 1.4:+8865258 | MS.gene51570:CDS |
| ACTGGAAGTCCTACTGGTGC+AGG | 0.521845 | 1.4:+8863747 | MS.gene51570:CDS |
| TTGACCTGATCAATAGTTAG+TGG | 0.522357 | 1.4:-8863852 | None:intergenic |
| TGGGACAATGTGGTATTGGT+AGG | 0.524425 | 1.4:+8866159 | MS.gene51570:CDS |
| TAAACTTCAGAGCAGCACAT+TGG | 0.527574 | 1.4:+8864355 | MS.gene51570:CDS |
| TCATATATGAAATTTAAGAA+AGG | 0.530399 | 1.4:-8866111 | None:intergenic |
| TCCCTTGGAGAAGATATTCT+GGG | 0.532438 | 1.4:+8866140 | MS.gene51570:CDS |
| GAAGAGAAGATGGTTGGAGA+AGG | 0.532970 | 1.4:+8863609 | None:intergenic |
| GTTCTTCATGCAAGGCGTCT+CGG | 0.536153 | 1.4:+8866345 | MS.gene51570:CDS |
| TCAGGCTATTGTGCTTGGAG+AGG | 0.538211 | 1.4:+8865073 | MS.gene51570:CDS |
| CCAAAAGCAGTGATTGTTGG+AGG | 0.538377 | 1.4:+8863639 | MS.gene51570:CDS |
| ACTTCCAGTTGGAGGTGAGG+TGG | 0.539750 | 1.4:-8863733 | None:intergenic |
| CCAAGCAAGTTCTTCATGCA+AGG | 0.542002 | 1.4:+8866337 | MS.gene51570:CDS |
| TGAATTGAAGAGAAGATGGT+TGG | 0.542032 | 1.4:+8863603 | None:intergenic |
| AAAATGCTTGTACTTTGACT+TGG | 0.543757 | 1.4:+8865168 | MS.gene51570:CDS |
| GGTAACTGATAGTGAGAAGA+AGG | 0.544832 | 1.4:+8864302 | MS.gene51570:CDS |
| CAGACCTTAGTTTAAAATCA+GGG | 0.548814 | 1.4:-8864584 | None:intergenic |
| TAAGGTAGTGAGGCGTAGTA+GGG | 0.552562 | 1.4:-8866194 | None:intergenic |
| GTTGTCTCTCTTCAATCCGC+CGG | 0.555342 | 1.4:+8864553 | MS.gene51570:CDS |
| AAAGGGTCCTGTCATAGTAA+AGG | 0.556839 | 1.4:+8864467 | MS.gene51570:CDS |
| GGGACAATGTGGTATTGGTA+GGG | 0.556947 | 1.4:+8866160 | MS.gene51570:CDS |
| TCTTCTCACTATCAGTTACC+AGG | 0.558524 | 1.4:-8864299 | None:intergenic |
| GTCCCAGAATATCTTCTCCA+AGG | 0.564956 | 1.4:-8866142 | None:intergenic |
| AGGCTATTGTGCTTGGAGAG+GGG | 0.575792 | 1.4:+8865075 | MS.gene51570:CDS |
| TCCCAAGTCTGCAAGGAAAG+AGG | 0.580114 | 1.4:+8866413 | MS.gene51570:CDS |
| TCCCAGAATATCTTCTCCAA+GGG | 0.587316 | 1.4:-8866141 | None:intergenic |
| AGGACTTCCAGTTGGAGGTG+AGG | 0.591634 | 1.4:-8863736 | None:intergenic |
| CCAGTAGGACTTCCAGTTGG+AGG | 0.592352 | 1.4:-8863741 | None:intergenic |
| TTGTTGGAGGTAGCATTGGA+GGG | 0.595560 | 1.4:+8863652 | MS.gene51570:CDS |
| GGACAATGTGGTATTGGTAG+GGG | 0.607883 | 1.4:+8866161 | MS.gene51570:CDS |
| GTGTTGTGTAGGAATTGTGG+TGG | 0.615782 | 1.4:-8863822 | None:intergenic |
| CATGACAATATTAGATGCAG+CGG | 0.616705 | 1.4:+8866227 | MS.gene51570:CDS |
| CGTCTCGGTCGCATAAAACA+AGG | 0.618626 | 1.4:+8866360 | MS.gene51570:CDS |
| GATCAAAAGGATCTCTATCA+GGG | 0.619750 | 1.4:-8866392 | None:intergenic |
| AACCATCACAGGTATCAAGA+AGG | 0.619798 | 1.4:+8865129 | MS.gene51570:CDS |
| GTGGTGTTGTGTAGGAATTG+TGG | 0.620083 | 1.4:-8863825 | None:intergenic |
| GAGGATTCAGAAACCATCAC+AGG | 0.640014 | 1.4:+8865118 | MS.gene51570:CDS |
| ATGGATTCCTGAGTTAGCAA+AGG | 0.642615 | 1.4:+8866068 | MS.gene51570:CDS |
| TTTGTGCTTCTAAGGTAGTG+AGG | 0.645723 | 1.4:-8866204 | None:intergenic |
| AACTTCAGAGCAGCACATTG+GGG | 0.652616 | 1.4:+8864357 | MS.gene51570:CDS |
| AGTCCAAGACCTGCACCAGT+AGG | 0.656699 | 1.4:-8863756 | None:intergenic |
| ATCAATAGTTAGTGGATGAG+TGG | 0.658849 | 1.4:-8863844 | None:intergenic |
| GCACCAGTAGGACTTCCAGT+TGG | 0.664365 | 1.4:-8863744 | None:intergenic |
| GAAGATATTCTGGGACAATG+TGG | 0.671683 | 1.4:+8866149 | MS.gene51570:CDS |
| TAACACACTGTGTGTACCTG+AGG | 0.676605 | 1.4:-8865191 | None:intergenic |
| AAAGGTCATGAAAGAAACGA+AGG | 0.680367 | 1.4:+8866086 | MS.gene51570:CDS |
| AATCAGGGAGATATTTCCGG+CGG | 0.688585 | 1.4:-8864569 | None:intergenic |
| TAAAGTTGTGAAAACCGGAG+AGG | 0.715471 | 1.4:+8864491 | MS.gene51570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATCCATAAAAGAAA+AGG | - | chr1.4:8864633-8864652 | None:intergenic | 15.0% |
| !! | ATTAAATCCATAAAAGAAAA+GGG | - | chr1.4:8864632-8864651 | None:intergenic | 15.0% |
| !! | TAAAATAAAAGATAAAGAGA+AGG | - | chr1.4:8863884-8863903 | None:intergenic | 15.0% |
| !! | TAATTATTCTAATGATTTGA+TGG | - | chr1.4:8864120-8864139 | None:intergenic | 15.0% |
| !! | TCATATATGAAATTTAAGAA+AGG | - | chr1.4:8866114-8866133 | None:intergenic | 15.0% |
| !! | TTATCAATAAAGAAAAATAG+TGG | - | chr1.4:8865897-8865916 | None:intergenic | 15.0% |
| !!! | AATTAATCTCTTCTTTTATA+TGG | + | chr1.4:8865013-8865032 | MS.gene51570:intron | 15.0% |
| !!! | CAAATATTTTTATGATCAAA+CGG | - | chr1.4:8864691-8864710 | None:intergenic | 15.0% |
| !! | ATAAAAAACTCAATTGGATT+TGG | + | chr1.4:8865227-8865246 | MS.gene51570:CDS | 20.0% |
| !! | CAATTATGATAACTGTTATT+GGG | - | chr1.4:8865310-8865329 | None:intergenic | 20.0% |
| !!! | ATCCAATTGAGTTTTTTATT+CGG | - | chr1.4:8865226-8865245 | None:intergenic | 20.0% |
| ! | AAATGTGCATCATTGAAAAA+AGG | - | chr1.4:8866468-8866487 | None:intergenic | 25.0% |
| ! | AACGTTTCTTTAAATCAAAC+AGG | + | chr1.4:8865681-8865700 | MS.gene51570:intron | 25.0% |
| ! | AATAAAAGATAAAGAGAAGG+TGG | - | chr1.4:8863881-8863900 | None:intergenic | 25.0% |
| ! | ATAATTAAGATACACTGATG+TGG | - | chr1.4:8865759-8865778 | None:intergenic | 25.0% |
| ! | CCAATAACAGTTATCATAAT+TGG | + | chr1.4:8865308-8865327 | MS.gene51570:intron | 25.0% |
| ! | CCAATTATGATAACTGTTAT+TGG | - | chr1.4:8865311-8865330 | None:intergenic | 25.0% |
| ! | CTATCTTAAAAGTCATACAA+AGG | + | chr1.4:8864724-8864743 | MS.gene51570:intron | 25.0% |
| ! | GACAATTGTAAAATGATCAT+CGG | + | chr1.4:8864021-8864040 | MS.gene51570:intron | 25.0% |
| ! | TTCCGAATAAAAAACTCAAT+TGG | + | chr1.4:8865221-8865240 | MS.gene51570:CDS | 25.0% |
| ! | TTTAAATCAAAGAGAAGACA+TGG | + | chr1.4:8865620-8865639 | MS.gene51570:intron | 25.0% |
| !! | ATGTCTTCTCTTTGATTTAA+AGG | - | chr1.4:8865621-8865640 | None:intergenic | 25.0% |
| !! | TAACTTTCCCTTTTCTTTTA+TGG | + | chr1.4:8864622-8864641 | MS.gene51570:intron | 25.0% |
| !! | TGTCTTCTCTTTGATTTAAA+GGG | - | chr1.4:8865620-8865639 | None:intergenic | 25.0% |
| !!! | TACAAAGTGTTGTCAAATAT+CGG | - | chr1.4:8864883-8864902 | None:intergenic | 25.0% |
| !!! | TCTTGATTTTTCAAAAATCG+AGG | + | chr1.4:8865099-8865118 | MS.gene51570:CDS | 25.0% |
| AAAATGATCATCGGTAACAA+CGG | + | chr1.4:8864030-8864049 | MS.gene51570:intron | 30.0% | |
| AAAATGCTTGTACTTTGACT+TGG | + | chr1.4:8865168-8865187 | MS.gene51570:CDS | 30.0% | |
| AACAATCTTACCTTTACTTC+AGG | - | chr1.4:8865271-8865290 | None:intergenic | 30.0% | |
| AACATGCTTCAATTCAAAAC+AGG | + | chr1.4:8865384-8865403 | MS.gene51570:intron | 30.0% | |
| ACCACTAAACAAACATTTCA+AGG | - | chr1.4:8863952-8863971 | None:intergenic | 30.0% | |
| AGCATGCAAACTATAGATTT+CGG | - | chr1.4:8865725-8865744 | None:intergenic | 30.0% | |
| ATAGTGAGAAGAAGGTTAAT+TGG | + | chr1.4:8864310-8864329 | MS.gene51570:CDS | 30.0% | |
| ATCAGTTAGTGTTGTCAAAT+TGG | - | chr1.4:8864983-8865002 | None:intergenic | 30.0% | |
| ATGTTACGCTATAGTGATAT+AGG | + | chr1.4:8864944-8864963 | MS.gene51570:intron | 30.0% | |
| ATTGAATGATTTGAAGAGAG+AGG | - | chr1.4:8863788-8863807 | None:intergenic | 30.0% | |
| CCTAAAGTAACATACATGAT+TGG | + | chr1.4:8864159-8864178 | MS.gene51570:intron | 30.0% | |
| CTATAGATTTCGGAACAAAA+TGG | - | chr1.4:8865715-8865734 | None:intergenic | 30.0% | |
| CTCTTCAAATCATTCAATCT+TGG | + | chr1.4:8863790-8863809 | MS.gene51570:CDS | 30.0% | |
| GCTTATCTGACAACAATAAA+AGG | - | chr1.4:8865937-8865956 | None:intergenic | 30.0% | |
| TAAAATCAGGGAGATATTTC+CGG | - | chr1.4:8864575-8864594 | None:intergenic | 30.0% | |
| TAAAATCTCAATAACCTCTC+CGG | - | chr1.4:8864508-8864527 | None:intergenic | 30.0% | |
| TATGTTCCTAGTTACGATAT+TGG | + | chr1.4:8865416-8865435 | MS.gene51570:intron | 30.0% | |
| TCCTTGAAATGTTTGTTTAG+TGG | + | chr1.4:8863948-8863967 | MS.gene51570:intron | 30.0% | |
| TGACCCCATAAAAATATTTG+TGG | - | chr1.4:8864417-8864436 | None:intergenic | 30.0% | |
| TGTTACGCTATAGTGATATA+GGG | + | chr1.4:8864945-8864964 | MS.gene51570:intron | 30.0% | |
| TTCCATGTTGCAAATGAAAA+GGG | + | chr1.4:8864450-8864469 | MS.gene51570:CDS | 30.0% | |
| TTGAATGATTTGAAGAGAGA+GGG | - | chr1.4:8863787-8863806 | None:intergenic | 30.0% | |
| TTTCCATGTTGCAAATGAAA+AGG | + | chr1.4:8864449-8864468 | MS.gene51570:CDS | 30.0% | |
| ! | ACAAGCATTTTCCTAAATCA+GGG | - | chr1.4:8865159-8865178 | None:intergenic | 30.0% |
| ! | ACAGACCTTAGTTTAAAATC+AGG | - | chr1.4:8864588-8864607 | None:intergenic | 30.0% |
| ! | ATCTCCCTGATTTTAAACTA+AGG | + | chr1.4:8864580-8864599 | MS.gene51570:CDS | 30.0% |
| ! | CAGACCTTAGTTTAAAATCA+GGG | - | chr1.4:8864587-8864606 | None:intergenic | 30.0% |
| ! | TACAAAGGATGATTTGTGAT+TGG | + | chr1.4:8864739-8864758 | MS.gene51570:intron | 30.0% |
| ! | TACAAGCATTTTCCTAAATC+AGG | - | chr1.4:8865160-8865179 | None:intergenic | 30.0% |
| ! | TCAACTGTGTCATTAAATAG+AGG | + | chr1.4:8865787-8865806 | MS.gene51570:intron | 30.0% |
| ! | TTGAATTGAAGCATGTTTTG+AGG | - | chr1.4:8865381-8865400 | None:intergenic | 30.0% |
| !! | CCAATCATGTATGTTACTTT+AGG | - | chr1.4:8864162-8864181 | None:intergenic | 30.0% |
| !! | TCCGCCACAAATATTTTTAT+GGG | + | chr1.4:8864410-8864429 | MS.gene51570:CDS | 30.0% |
| !! | TTCCGCCACAAATATTTTTA+TGG | + | chr1.4:8864409-8864428 | MS.gene51570:CDS | 30.0% |
| !!! | GTTGATTGTATTTTAATCCG+TGG | + | chr1.4:8865961-8865980 | MS.gene51570:intron | 30.0% |
| !!! | TATTGGGATATTTTGATTCG+AGG | - | chr1.4:8865294-8865313 | None:intergenic | 30.0% |
| AAACCAAAAGCAGTGATTGT+TGG | + | chr1.4:8863636-8863655 | MS.gene51570:CDS | 35.0% | |
| AAAGGTCATGAAAGAAACGA+AGG | + | chr1.4:8866086-8866105 | MS.gene51570:CDS | 35.0% | |
| AAATGATCATCGGTAACAAC+GGG | + | chr1.4:8864031-8864050 | MS.gene51570:intron | 35.0% | |
| AAGGCTAAAGTTGTGAAAAC+CGG | + | chr1.4:8864486-8864505 | MS.gene51570:CDS | 35.0% | |
| ACCAAGAAGCAGAAAAAGTA+TGG | + | chr1.4:8866049-8866068 | MS.gene51570:CDS | 35.0% | |
| AGGCAAATGCATAGAGAAAT+GGG | + | chr1.4:8866254-8866273 | MS.gene51570:CDS | 35.0% | |
| AGTTAGTGTTGTCAAATTGG+CGG | - | chr1.4:8864980-8864999 | None:intergenic | 35.0% | |
| CATGACAATATTAGATGCAG+CGG | + | chr1.4:8866227-8866246 | MS.gene51570:CDS | 35.0% | |
| CCCCATAAAAATATTTGTGG+CGG | - | chr1.4:8864414-8864433 | None:intergenic | 35.0% | |
| CGTGGTTTCAAAATTCTTCA+GGG | + | chr1.4:8865979-8865998 | MS.gene51570:intron | 35.0% | |
| GATCAAAAGGATCTCTATCA+GGG | - | chr1.4:8866395-8866414 | None:intergenic | 35.0% | |
| GATTAACAACGCTGCTATTA+GGG | - | chr1.4:8864786-8864805 | None:intergenic | 35.0% | |
| TACACTGATGTGGCAATAAA+AGG | - | chr1.4:8865749-8865768 | None:intergenic | 35.0% | |
| TACAGTGCATTAGTGCTATA+GGG | + | chr1.4:8864848-8864867 | MS.gene51570:intron | 35.0% | |
| TAGGCAAATGCATAGAGAAA+TGG | + | chr1.4:8866253-8866272 | MS.gene51570:CDS | 35.0% | |
| TATATGGAGAATGCTCTCTA+AGG | + | chr1.4:8865029-8865048 | MS.gene51570:intron | 35.0% | |
| TCATCCACTAACTATTGATC+AGG | + | chr1.4:8863848-8863867 | MS.gene51570:CDS | 35.0% | |
| TCTTAATCTTGAACAGAACC+TGG | + | chr1.4:8864281-8864300 | MS.gene51570:intron | 35.0% | |
| TTACAGTGCATTAGTGCTAT+AGG | + | chr1.4:8864847-8864866 | MS.gene51570:intron | 35.0% | |
| TTGACCTGATCAATAGTTAG+TGG | - | chr1.4:8863855-8863874 | None:intergenic | 35.0% | |
| TTGTCATGTTTGTGCTTCTA+AGG | - | chr1.4:8866215-8866234 | None:intergenic | 35.0% | |
| ! | ACATACATGATTGGTTGTGT+TGG | + | chr1.4:8864168-8864187 | MS.gene51570:intron | 35.0% |
| ! | ACTTTAGCCTTTACTATGAC+AGG | - | chr1.4:8864477-8864496 | None:intergenic | 35.0% |
| ! | AGTATGTTTTGCAGGTATTC+AGG | + | chr1.4:8865055-8865074 | MS.gene51570:intron | 35.0% |
| ! | ATCAATAGTTAGTGGATGAG+TGG | - | chr1.4:8863847-8863866 | None:intergenic | 35.0% |
| ! | CATATATGATAGTGATCCCT+TGG | + | chr1.4:8866125-8866144 | MS.gene51570:CDS | 35.0% |
| ! | CTTCTCTTTGATTTAAAGGG+CGG | - | chr1.4:8865617-8865636 | None:intergenic | 35.0% |
| ! | GCTTTTCCAATATCGTAACT+AGG | - | chr1.4:8865425-8865444 | None:intergenic | 35.0% |
| ! | GGAGAGGTTATTGAGATTTT+AGG | + | chr1.4:8864507-8864526 | MS.gene51570:CDS | 35.0% |
| ! | TAAGGTCAAGTATGTTTTGC+AGG | + | chr1.4:8865047-8865066 | MS.gene51570:intron | 35.0% |
| ! | TGGAAAAGCTTTCTAGCAAA+GGG | + | chr1.4:8865436-8865455 | MS.gene51570:intron | 35.0% |
| ! | TTGGAAAAGCTTTCTAGCAA+AGG | + | chr1.4:8865435-8865454 | MS.gene51570:intron | 35.0% |
| !! | CCGCCACAAATATTTTTATG+GGG | + | chr1.4:8864411-8864430 | MS.gene51570:CDS | 35.0% |
| !! | TTGTTCTGCTTAGTTTGCTT+GGG | + | chr1.4:8865528-8865547 | MS.gene51570:intron | 35.0% |
| !! | TTTGTTCTGCTTAGTTTGCT+TGG | + | chr1.4:8865527-8865546 | MS.gene51570:intron | 35.0% |
| !!! | CCTGAAGAATTTTGAAACCA+CGG | - | chr1.4:8865981-8866000 | None:intergenic | 35.0% |
| !!! | TCCATACTTTTTCTGCTTCT+TGG | - | chr1.4:8866053-8866072 | None:intergenic | 35.0% |
| AAACTTCAGAGCAGCACATT+GGG | + | chr1.4:8864356-8864375 | MS.gene51570:CDS | 40.0% | |
| AAAGGGTCCTGTCATAGTAA+AGG | + | chr1.4:8864467-8864486 | MS.gene51570:CDS | 40.0% | |
| AACCATCACAGGTATCAAGA+AGG | + | chr1.4:8865129-8865148 | MS.gene51570:CDS | 40.0% | |
| ATAGCAGCACTATAGTGTAG+CGG | + | chr1.4:8865814-8865833 | MS.gene51570:intron | 40.0% | |
| ATATTAGATGCAGCGGTGTT+AGG | + | chr1.4:8866234-8866253 | MS.gene51570:CDS | 40.0% | |
| ATCCCAACCAGCTAAGATAA+GGG | - | chr1.4:8863694-8863713 | None:intergenic | 40.0% | |
| ATCCCTTGGAGAAGATATTC+TGG | + | chr1.4:8866139-8866158 | MS.gene51570:CDS | 40.0% | |
| ATGGATTCCTGAGTTAGCAA+AGG | + | chr1.4:8866068-8866087 | MS.gene51570:CDS | 40.0% | |
| CCGTGGTTTCAAAATTCTTC+AGG | + | chr1.4:8865978-8865997 | MS.gene51570:intron | 40.0% | |
| GGAAGCTGAAAAGCTTGAAT+CGG | + | chr1.4:8866275-8866294 | MS.gene51570:CDS | 40.0% | |
| GGATCAAAAGGATCTCTATC+AGG | - | chr1.4:8866396-8866415 | None:intergenic | 40.0% | |
| GGATTAACAACGCTGCTATT+AGG | - | chr1.4:8864787-8864806 | None:intergenic | 40.0% | |
| TAAACTTCAGAGCAGCACAT+TGG | + | chr1.4:8864355-8864374 | MS.gene51570:CDS | 40.0% | |
| TAAAGTTGTGAAAACCGGAG+AGG | + | chr1.4:8864491-8864510 | MS.gene51570:CDS | 40.0% | |
| TCCCAGAATATCTTCTCCAA+GGG | - | chr1.4:8866144-8866163 | None:intergenic | 40.0% | |
| TCCCTTGGAGAAGATATTCT+GGG | + | chr1.4:8866140-8866159 | MS.gene51570:CDS | 40.0% | |
| TCTTCTCACTATCAGTTACC+AGG | - | chr1.4:8864302-8864321 | None:intergenic | 40.0% | |
| TTCATGACCTTTGCTAACTC+AGG | - | chr1.4:8866078-8866097 | None:intergenic | 40.0% | |
| TTCGGAACAAAATGGAGAGT+AGG | - | chr1.4:8865707-8865726 | None:intergenic | 40.0% | |
| ! | AAGAAGGCATACCCTGATTT+AGG | + | chr1.4:8865145-8865164 | MS.gene51570:CDS | 40.0% |
| ! | AGAACTTGCTTGGAAGTAAC+TGG | - | chr1.4:8866330-8866349 | None:intergenic | 40.0% |
| ! | GACCCTTTTCATTTGCAACA+TGG | - | chr1.4:8864455-8864474 | None:intergenic | 40.0% |
| ! | GGTAACTGATAGTGAGAAGA+AGG | + | chr1.4:8864302-8864321 | MS.gene51570:CDS | 40.0% |
| ! | TGAAAAGCTTGAATCGGCTT+TGG | + | chr1.4:8866281-8866300 | MS.gene51570:CDS | 40.0% |
| !! | ATTCTGGGACAATGTGGTAT+TGG | + | chr1.4:8866155-8866174 | MS.gene51570:CDS | 40.0% |
| !! | GAAGATATTCTGGGACAATG+TGG | + | chr1.4:8866149-8866168 | MS.gene51570:CDS | 40.0% |
| !! | TGTTCTGCTTAGTTTGCTTG+GGG | + | chr1.4:8865529-8865548 | MS.gene51570:intron | 40.0% |
| !! | TTAGTTTGCTTGGGGATGTA+AGG | + | chr1.4:8865537-8865556 | MS.gene51570:intron | 40.0% |
| !! | TTTGTGCTTCTAAGGTAGTG+AGG | - | chr1.4:8866207-8866226 | None:intergenic | 40.0% |
| !!! | AGGTGGTTTTTTCAAGGACA+AGG | - | chr1.4:8863719-8863738 | None:intergenic | 40.0% |
| !!! | AGTTACTTTTGTCGTCACAG+AGG | - | chr1.4:8866007-8866026 | None:intergenic | 40.0% |
| AACTTCAGAGCAGCACATTG+GGG | + | chr1.4:8864357-8864376 | MS.gene51570:CDS | 45.0% | |
| AATCAGGGAGATATTTCCGG+CGG | - | chr1.4:8864572-8864591 | None:intergenic | 45.0% | |
| ACTGCTATATTCCGCTCTTC+TGG | - | chr1.4:8864808-8864827 | None:intergenic | 45.0% | |
| ATGCCCTTATCTTAGCTGGT+TGG | + | chr1.4:8863688-8863707 | MS.gene51570:CDS | 45.0% | |
| CATCCCAACCAGCTAAGATA+AGG | - | chr1.4:8863695-8863714 | None:intergenic | 45.0% | |
| CCAAAAGCAGTGATTGTTGG+AGG | + | chr1.4:8863639-8863658 | MS.gene51570:CDS | 45.0% | |
| CCAAGCAAGTTCTTCATGCA+AGG | + | chr1.4:8866337-8866356 | MS.gene51570:CDS | 45.0% | |
| CTTACCTTTACTTCAGGCTC+TGG | - | chr1.4:8865265-8865284 | None:intergenic | 45.0% | |
| CTTGCAGACTTGGGATCAAA+AGG | - | chr1.4:8866408-8866427 | None:intergenic | 45.0% | |
| GAGGATTCAGAAACCATCAC+AGG | + | chr1.4:8865118-8865137 | MS.gene51570:CDS | 45.0% | |
| GCGTTGTTAATCCAGAAGAG+CGG | + | chr1.4:8864794-8864813 | MS.gene51570:intron | 45.0% | |
| GGTATTCAGGCTATTGTGCT+TGG | + | chr1.4:8865068-8865087 | MS.gene51570:intron | 45.0% | |
| GTCCCAGAATATCTTCTCCA+AGG | - | chr1.4:8866145-8866164 | None:intergenic | 45.0% | |
| GTGATTGTTGGAGGTAGCAT+TGG | + | chr1.4:8863648-8863667 | MS.gene51570:CDS | 45.0% | |
| GTGTTGTGTAGGAATTGTGG+TGG | - | chr1.4:8863825-8863844 | None:intergenic | 45.0% | |
| TAACACACTGTGTGTACCTG+AGG | - | chr1.4:8865194-8865213 | None:intergenic | 45.0% | |
| TAAGGTAGTGAGGCGTAGTA+GGG | - | chr1.4:8866197-8866216 | None:intergenic | 45.0% | |
| TCCTCTTTCCTTGCAGACTT+GGG | - | chr1.4:8866417-8866436 | None:intergenic | 45.0% | |
| TGCCCTTATCTTAGCTGGTT+GGG | + | chr1.4:8863689-8863708 | MS.gene51570:CDS | 45.0% | |
| TGCCTTCTTGATACCTGTGA+TGG | - | chr1.4:8865134-8865153 | None:intergenic | 45.0% | |
| ! | ATTGTTGGAGGTAGCATTGG+AGG | + | chr1.4:8863651-8863670 | MS.gene51570:CDS | 45.0% |
| ! | CCTCCAACAATCACTGCTTT+TGG | - | chr1.4:8863642-8863661 | None:intergenic | 45.0% |
| ! | CCTTGCATGAAGAACTTGCT+TGG | - | chr1.4:8866340-8866359 | None:intergenic | 45.0% |
| ! | CTTTTGATCCCAAGTCTGCA+AGG | + | chr1.4:8866406-8866425 | MS.gene51570:CDS | 45.0% |
| ! | GATTTGCTTGTTGCTGCAGA+TGG | + | chr1.4:8864531-8864550 | MS.gene51570:CDS | 45.0% |
| ! | TTGTTGGAGGTAGCATTGGA+GGG | + | chr1.4:8863652-8863671 | MS.gene51570:CDS | 45.0% |
| !! | GGACAATGTGGTATTGGTAG+GGG | + | chr1.4:8866161-8866180 | MS.gene51570:CDS | 45.0% |
| !! | GGGACAATGTGGTATTGGTA+GGG | + | chr1.4:8866160-8866179 | MS.gene51570:CDS | 45.0% |
| !! | GTGGTGTTGTGTAGGAATTG+TGG | - | chr1.4:8863828-8863847 | None:intergenic | 45.0% |
| !! | TGGGACAATGTGGTATTGGT+AGG | + | chr1.4:8866159-8866178 | MS.gene51570:CDS | 45.0% |
| !! | TTGTACTTTGACTTGGCCTC+AGG | + | chr1.4:8865175-8865194 | MS.gene51570:CDS | 45.0% |
| !!! | GAGGTGAGGTGGTTTTTTCA+AGG | - | chr1.4:8863725-8863744 | None:intergenic | 45.0% |
| AAAACCACCTCACCTCCAAC+TGG | + | chr1.4:8863729-8863748 | MS.gene51570:CDS | 50.0% | |
| AGGCTATTGTGCTTGGAGAG+GGG | + | chr1.4:8865075-8865094 | MS.gene51570:CDS | 50.0% | |
| CAGGCTATTGTGCTTGGAGA+GGG | + | chr1.4:8865074-8865093 | MS.gene51570:CDS | 50.0% | |
| CGGTCGCATAAAACAAGGTC+TGG | + | chr1.4:8866365-8866384 | MS.gene51570:CDS | 50.0% | |
| CGTCTCGGTCGCATAAAACA+AGG | + | chr1.4:8866360-8866379 | MS.gene51570:CDS | 50.0% | |
| CTAAGGTAGTGAGGCGTAGT+AGG | - | chr1.4:8866198-8866217 | None:intergenic | 50.0% | |
| CTCCTCTTTCCTTGCAGACT+TGG | - | chr1.4:8866418-8866437 | None:intergenic | 50.0% | |
| GCACATGCCCTTATCTTAGC+TGG | + | chr1.4:8863684-8863703 | MS.gene51570:CDS | 50.0% | |
| GCACATTGGGGTGATCTTCA+TGG | + | chr1.4:8864369-8864388 | MS.gene51570:CDS | 50.0% | |
| GTTGTCTCTCTTCAATCCGC+CGG | + | chr1.4:8864553-8864572 | MS.gene51570:CDS | 50.0% | |
| TCAGCCAGAGCCTGAAGTAA+AGG | + | chr1.4:8865258-8865277 | MS.gene51570:CDS | 50.0% | |
| TCAGGCTATTGTGCTTGGAG+AGG | + | chr1.4:8865073-8865092 | MS.gene51570:CDS | 50.0% | |
| TCATCGGTAACAACGGGACA+AGG | + | chr1.4:8864037-8864056 | MS.gene51570:intron | 50.0% | |
| TCCCAAGTCTGCAAGGAAAG+AGG | + | chr1.4:8866413-8866432 | MS.gene51570:CDS | 50.0% | |
| ! | GTTCTTCATGCAAGGCGTCT+CGG | + | chr1.4:8866345-8866364 | MS.gene51570:CDS | 50.0% |
| ! | TGTCAAATTGGCGGACACAG+CGG | - | chr1.4:8864971-8864990 | None:intergenic | 50.0% |
| !! | GTGGATGAGTGGTGTTGTGT+AGG | - | chr1.4:8863836-8863855 | None:intergenic | 50.0% |
| !! | TGCAAGGAAAGAGGAGTGTC+AGG | + | chr1.4:8866422-8866441 | MS.gene51570:CDS | 50.0% |
| ACTGGAAGTCCTACTGGTGC+AGG | + | chr1.4:8863747-8863766 | MS.gene51570:CDS | 55.0% | |
| ACTTCCAGTTGGAGGTGAGG+TGG | - | chr1.4:8863736-8863755 | None:intergenic | 55.0% | |
| AGGACTTCCAGTTGGAGGTG+AGG | - | chr1.4:8863739-8863758 | None:intergenic | 55.0% | |
| AGTCCAAGACCTGCACCAGT+AGG | - | chr1.4:8863759-8863778 | None:intergenic | 55.0% | |
| AGTCCTACTGGTGCAGGTCT+TGG | + | chr1.4:8863753-8863772 | MS.gene51570:CDS | 55.0% | |
| ATCCCCTGACTCCATCTGGT+GGG | + | chr1.4:8865575-8865594 | MS.gene51570:intron | 55.0% | |
| CCAGTAGGACTTCCAGTTGG+AGG | - | chr1.4:8863744-8863763 | None:intergenic | 55.0% | |
| CCTCCAACTGGAAGTCCTAC+TGG | + | chr1.4:8863741-8863760 | MS.gene51570:CDS | 55.0% | |
| GCACCAGTAGGACTTCCAGT+TGG | - | chr1.4:8863747-8863766 | None:intergenic | 55.0% | |
| TGTACAACGCTCCCACCAGA+TGG | - | chr1.4:8865589-8865608 | None:intergenic | 55.0% | |
| CACCAGATGGAGTCAGGGGA+TGG | - | chr1.4:8865576-8865595 | None:intergenic | 60.0% | |
| CACCATCCCCTGACTCCATC+TGG | + | chr1.4:8865571-8865590 | MS.gene51570:intron | 60.0% | |
| CAGATGGAGTCAGGGGATGG+TGG | - | chr1.4:8865573-8865592 | None:intergenic | 60.0% | |
| CATCCCCTGACTCCATCTGG+TGG | + | chr1.4:8865574-8865593 | MS.gene51570:intron | 60.0% | |
| CTCCCACCAGATGGAGTCAG+GGG | - | chr1.4:8865580-8865599 | None:intergenic | 60.0% | |
| GCTCCCACCAGATGGAGTCA+GGG | - | chr1.4:8865581-8865600 | None:intergenic | 60.0% | |
| CGCTCCCACCAGATGGAGTC+AGG | - | chr1.4:8865582-8865601 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 8863618 | 8866518 | 8863618 | ID=MS.gene51570 |
| chr1.4 | mRNA | 8863618 | 8866518 | 8863618 | ID=MS.gene51570.t1;Parent=MS.gene51570 |
| chr1.4 | exon | 8863618 | 8863869 | 8863618 | ID=MS.gene51570.t1.exon1;Parent=MS.gene51570.t1 |
| chr1.4 | CDS | 8863618 | 8863869 | 8863618 | ID=cds.MS.gene51570.t1;Parent=MS.gene51570.t1 |
| chr1.4 | exon | 8864297 | 8864601 | 8864297 | ID=MS.gene51570.t1.exon2;Parent=MS.gene51570.t1 |
| chr1.4 | CDS | 8864297 | 8864601 | 8864297 | ID=cds.MS.gene51570.t1;Parent=MS.gene51570.t1 |
| chr1.4 | exon | 8865069 | 8865279 | 8865069 | ID=MS.gene51570.t1.exon3;Parent=MS.gene51570.t1 |
| chr1.4 | CDS | 8865069 | 8865279 | 8865069 | ID=cds.MS.gene51570.t1;Parent=MS.gene51570.t1 |
| chr1.4 | exon | 8866000 | 8866518 | 8866000 | ID=MS.gene51570.t1.exon4;Parent=MS.gene51570.t1 |
| chr1.4 | CDS | 8866000 | 8866518 | 8866000 | ID=cds.MS.gene51570.t1;Parent=MS.gene51570.t1 |
| Gene Sequence |
| Protein sequence |
