AlfalfaGEDB | MS.gene51595

M. sativa cultivar XinJiangDaYe / MS.gene51595

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0055114
PFAM: PF03171.23 PF14226.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51595.t1	XP_003623991.1	94.4	373	21	0	1	373	1	373	7.00E-205	723

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51595.t1	Q9LTH7	51.8	353	163	4	13	361	5	354	3.2e-105	383.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51595.t1	G7L5M9	94.4	373	21	0	1	373	1	373	5.1e-205	723.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04925	MS.gene51595	0.83714	6.19E-57	-1.69E-46
MS.gene04927	MS.gene51595	0.800079	1.71E-48	-1.69E-46
MS.gene049549	MS.gene51595	0.834662	2.63E-56	-1.69E-46
MS.gene049813	MS.gene51595	0.802964	4.37E-49	-1.69E-46
MS.gene051131	MS.gene51595	0.812735	3.65E-51	-1.69E-46
MS.gene052211	MS.gene51595	0.835639	1.49E-56	-1.69E-46
MS.gene05240	MS.gene51595	0.819233	1.29E-52	-1.69E-46
MS.gene052606	MS.gene51595	0.818691	1.72E-52	-1.69E-46
MS.gene053887	MS.gene51595	0.834169	3.50E-56	-1.69E-46
MS.gene054146	MS.gene51595	0.834198	3.44E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51595.t1	MTR_7g078010	94.370	373	21	0	1	373	1	373	0.0	704
MS.gene51595.t1	MTR_8g006930	85.255	373	55	0	1	373	1	373	0.0	641
MS.gene51595.t1	MTR_4g119410	79.893	373	75	0	1	373	1	373	0.0	602
MS.gene51595.t1	MTR_7g056393	75.335	373	92	0	1	373	1	373	0.0	569
MS.gene51595.t1	MTR_7g056347	71.582	373	106	0	1	373	1	373	0.0	569
MS.gene51595.t1	MTR_7g078010	93.056	288	20	0	1	288	1	288	0.0	538
MS.gene51595.t1	MTR_8g063070	61.394	373	144	0	1	373	1	373	4.41e-176	494
MS.gene51595.t1	MTR_4g024660	61.662	373	143	0	1	373	1	373	1.25e-172	486
MS.gene51595.t1	MTR_8g062600	61.394	373	144	0	1	373	1	373	3.00e-172	484
MS.gene51595.t1	MTR_1g093110	60.434	369	138	3	11	373	8	374	4.34e-169	477

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51595.t1	AT5G59540	51.841	353	163	4	13	361	5	354	2.65e-132	383
MS.gene51595.t1	AT1G06620	51.594	345	163	2	18	361	12	353	6.12e-131	380
MS.gene51595.t1	AT1G06650	48.501	367	178	5	14	373	7	369	2.83e-126	368
MS.gene51595.t1	AT2G30840	50.549	364	169	5	16	373	4	362	1.83e-125	365
MS.gene51595.t1	AT2G30830	50.575	348	163	6	17	361	5	346	1.25e-123	361
MS.gene51595.t1	AT5G59530	45.879	364	191	4	13	373	4	364	9.25e-123	358
MS.gene51595.t1	AT1G03410	49.425	348	168	4	18	360	5	349	3.93e-122	357
MS.gene51595.t1	AT1G03410	48.343	362	174	5	4	360	33	386	6.96e-122	358
MS.gene51595.t1	AT5G43450	49.441	358	165	4	3	357	2	346	1.71e-121	355
MS.gene51595.t1	AT1G06640	47.802	364	181	4	16	373	9	369	7.90e-121	354

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Find 83 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTGGTGTCCAAGGTT+TGG	0.428168	7.2:-28021431	MS.gene51595:CDS
AAAGATTTATGGTCCTATTA+AGG	0.275771	7.2:-28018613	MS.gene51595:CDS
AAATGATTGATGGAATATGT+AGG	0.564749	7.2:-28021180	MS.gene51595:CDS
AAGCTTGCTACAGAAATTCT+TGG	0.265485	7.2:+28018672	None:intergenic
AAGTTCTTCATGAAGATAAA+TGG	0.210423	7.2:-28019627	MS.gene51595:CDS
AATCATTGGATTCCTCTAAT+TGG	0.284450	7.2:+28021497	None:intergenic
AATCTTTGAGTTATTGTCAG+AGG	0.577335	7.2:-28019821	MS.gene51595:CDS
AATTCAGGTTCGGGACATGT+TGG	0.571473	7.2:+28019724	None:intergenic
AATTCTCGTGACCCGGTTGA+AGG	0.457450	7.2:-28018642	MS.gene51595:CDS
ACAACAAGAGCGCCATGTAC+CGG	0.540472	7.2:+28019592	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTGGGTCTTAACTGTT+TGG	+	chr7.2:28019829-28019848	None:intergenic	30.0%
AAATTCAAATCCCCGTAAAA+TGG	-	chr7.2:28020749-28020768	MS.gene51595:intron	30.0%
AACGGTTAAGTCAATGTTTA+AGG	+	chr7.2:28019329-28019348	None:intergenic	30.0%
AAGTACCATCAATGAAGTTT+AGG	+	chr7.2:28019561-28019580	None:intergenic	30.0%
AATCATTGGATTCCTCTAAT+TGG	+	chr7.2:28018517-28018536	None:intergenic	30.0%
AGAAAACTCAAACCAATTAG+AGG	-	chr7.2:28018502-28018521	MS.gene51595:CDS	30.0%
ATGGCCAACAAATAACTTAA+GGG	-	chr7.2:28019418-28019437	MS.gene51595:intron	30.0%
ATTTCATCCAAGACAGTAAT+TGG	+	chr7.2:28018815-28018834	None:intergenic	30.0%
GAAGGAACATCAAAGATTTA+TGG	-	chr7.2:28021387-28021406	MS.gene51595:CDS	30.0%
GTAATATCTTTGTAGATTGG+TGG	+	chr7.2:28021444-28021463	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	28018494	28021539	28018494	ID=MS.gene51595
chr7.2	mRNA	28018494	28021539	28018494	ID=MS.gene51595.t1;Parent=MS.gene51595
chr7.2	exon	28021001	28021539	28021001	ID=MS.gene51595.t1.exon1;Parent=MS.gene51595.t1
chr7.2	CDS	28021001	28021539	28021001	ID=cds.MS.gene51595.t1;Parent=MS.gene51595.t1
chr7.2	exon	28019570	28019891	28019570	ID=MS.gene51595.t1.exon2;Parent=MS.gene51595.t1
chr7.2	CDS	28019570	28019891	28019570	ID=cds.MS.gene51595.t1;Parent=MS.gene51595.t1
chr7.2	exon	28018494	28018754	28018494	ID=MS.gene51595.t1.exon3;Parent=MS.gene51595.t1
chr7.2	CDS	28018494	28018754	28018494	ID=cds.MS.gene51595.t1;Parent=MS.gene51595.t1

Gene Sequence

>MS.gene51595

ATGGAGGTAGAAAACTCAAACCAATTAGAGGAATCCAATGATTTCACTTATGATAGAGAAGCTGAAATTAAAGCTTTTGATGATTCAAAAGTTGGTGTCCAAGGTTTGGTGGAGTCTGGGGTGTCAAAGATTCCACGCATGTTCTATACGGGGAAGTTGGAAATCTCCGAAAGCTCAGCTAGTGACTCCAAGTTGAGTATTCCCATCGTAGACCTCAAAGACATACACATCAATCTAGCTCGGCGTGCAGAGGTAATTGACCAAATTCGAATTGCATGTCATGAGTGGGGATTTTTTCAAGTGATTAATCATGAAATTCCAATTACTGTCTTGGATGAAATGATTGATGGAATATGTAGGTTTCATGAACAAGATGCTGATGTAAGAAAAGAGTTTTATACACGGGATTTAAAGAAAAAAGTTTCGTATTACTCTAATGTACGCTTGTTTAATGGAAAAGGTGCTAATTGGAGAGATACATTTGGTTTTGCTATTGCTCCTGATCCATTCAATCCTGATGAATTGCCACCAATATGCAGGTAATAAACTCAATATTAATTTGGATTCTCACTCTCTAAATCATTATCAGATTTAAATTGTATATCAAGGCATTTATTTATGGTCCCTTAAAAAGGCTTAAAAAGGCTTAATTAATGATTTGGTCCCTTAGGTTATTTGTTTGTTACATTTTGGTCCCATAAGTTATTAACGTTACAATTTGGTCCCTTAAATTAGTATTTGTTAGCCAAATAAATCCTTACCGTCAGTCTTTTGCCAAAACGTTAAATAGGCACATGTGAACGGTGACGTGACAACTTGCAATGTGTATCCACCTTAAACATTGACTTAACCGTTTTGACGGTGGGAATCTGTTTGTTTGAGGGAAGATGACTTAAAGGGACCAAATTGTAACATTAATAACTTATGGCCAACAAATAACTTAAGGGACCACATCATTAATTAAGCCTATTAAAAAAATACATAAATGATTACTTTTAGTTTTAGGCCCAAAATTTAGAAAGTATTTTTTTAGTCATGTTTTCAAATAAGCATGGGTCATGGTTCCTAAACTTCATTGATGGTACTTTACGTTGTTCAGATCCATTGTGGATATGTGAGCACGACTACAGTAGAAATGAGCTTAGGACTACAGTCCTTACATTTTTGAAAACGTAGAGAACTTACTCGTTGGACTCGAATGGTAAACGAGCTTAAGTTAAGGATAAATCATTTAAGAGAATTTGAGTTCGAATCCTTCGTACAAAAAATTTTGACCATATTTATTTATCTTCTGACCGAACTAGAATTACCAGGGCTCCATTCCGTTAGGAACCAAACAGTTAAGACCCAATTTTTTTTTTGAAGGATTACCTTGATGTTTTTCTATTTTGTGTGACCCCATATATACCCTTGATTTATTATGTAACTCTTATGTTATAAACAGAAGATGCCTTGCAAGTTTTCTATTAAATATAGTACAATCAAGTTTTCTAGAGTTCACAATTGTCACATTGCATCACACATGTAACATTCCCTCAAAAAAAAAAAAAAAAATCACACATGTAACATGATCAGAAGTACATTTCAGTTACAAATCATGTTCATTTGAATTATTTTAGTCATTGATGGATTGATTGCATACTTGCAGAGATATTGTGATTGAATATTCACAAAAAATAAAGAATATGGGTTTCACAATCTTTGAGTTATTGTCAGAGGCACTAGGACTTAACCCTTCTTACCTCCAAGAGTTTGGTTGTGCTGAAGGACTCTTTACTTTGGGTCACTTCTATCCAACATGTCCCGAACCTGAATTAACTATGGGTTCGACCGAGCATACTGATAGTACCTTCATGACATTACTTCTACAAGACCAACTTGGTGGTCTTCAAGTTCTTCATGAAGATAAATGGGTCAACGTTCCTCCGGTACATGGCGCTCTTGTTGTAAACATAGGAGATCTTCTGCAAGTAAATATTCTAACCCTAAACATAAGGCAACTCAATCTTTTGCTTTAGGTCTACACAAAATTTTTAATATTAAAGAAACTTCTATGATTATTTAGTCTAGTCTAGTAACCCATTTAAGTATTTTTTTCTTGAAGAACAAAGTTTATCATTGCTTGAGCCAATACAACCAGTGGCGGAGCCCTTCCTGGTTTCAGGTGGGCCGGCCCACACAAAAAAAATAAAAAAATTAACAATCGTAGGTCAATTTTGCTAGATTTTAAACAATTAACGGTTTTAATGAATGGCAAATTCAAATCCCCGTAAAATGGTGTAGTAGTCCATCAGTAAAAATTAAAAAATTAAAATCATATGTCCATTTGCAAGATTTTAAACAACTTTCAACGGTTTTAGTTTTCGAGGGTTCCAAAAGCGGCATATGAAATTTTTGACATGCTTAAACTTGCCTGGTTAGCGAAGACTTTACCATTAGCAATTCTTGTGAAATATAATAACAAAACTTTATAAAAAGGCAAAAGCAATAAAAATAAAAAGTAATATTGAAGAGGTTGGCAATTCAAAATTTGCAAAATCCATATACGTACTTAATGAATTGAGTGCAAGACTATCAATATATACTAATCACATCATCACATGTCATTTTTACACATTATTTCACCACATGTAATTGTATATCAAAAACTTGTGCATACTTAGAATGTGATTATAGTGAACTGCAATTGTTGGCTAGAAACCATTTCCAAAAATAAAATCATTGATTTCTTCATCATTGAAAGTTTGTGGTGACAGTTTTGTCATTTTTTTCTATACCTATGCAGCTTATCTCAAATGACAAGTTTGTAAGTGTTTTACACCGAGTCTTATCACAAAACATAGGTCCAAGAATTTCTGTAGCAAGCTTCTTTCTGAATTCTCGTGACCCGGTTGAAGGAACATCAAAGATTTATGGTCCTATTAAGGAGCTGATTTCAGAAGAAAACCCACCAATCTACAAAGATATTACCATAAAAGATTTCTTGGCACATTTTCATACAGAAGGCCGTAATGTGAAATTTTTGTTGGAGCCCTTCAAGTTGTGA

Protein sequence

>MS.gene51595.t1

MEVENSNQLEESNDFTYDREAEIKAFDDSKVGVQGLVESGVSKIPRMFYTGKLEISESSASDSKLSIPIVDLKDIHINLARRAEVIDQIRIACHEWGFFQVINHEIPITVLDEMIDGICRFHEQDADVRKEFYTRDLKKKVSYYSNVRLFNGKGANWRDTFGFAIAPDPFNPDELPPICRDIVIEYSQKIKNMGFTIFELLSEALGLNPSYLQEFGCAEGLFTLGHFYPTCPEPELTMGSTEHTDSTFMTLLLQDQLGGLQVLHEDKWVNVPPVHGALVVNIGDLLQLISNDKFVSVLHRVLSQNIGPRISVASFFLNSRDPVEGTSKIYGPIKELISEENPPIYKDITIKDFLAHFHTEGRNVKFLLEPFKL