Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52363.t1 | XP_013460875.1 | 98.8 | 252 | 3 | 0 | 3 | 254 | 37 | 288 | 1.50E-118 | 435.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52363.t1 | Q9SIE0 | 50.9 | 53 | 22 | 1 | 4 | 56 | 14 | 62 | 5.1e-06 | 53.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52363.t1 | A0A072UYR5 | 98.8 | 252 | 3 | 0 | 3 | 254 | 37 | 288 | 1.1e-118 | 435.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene52363 | 0.808487 | 3.02E-50 | -1.69E-46 |
| MS.gene050338 | MS.gene52363 | 0.800162 | 1.64E-48 | -1.69E-46 |
| MS.gene050707 | MS.gene52363 | 0.804303 | 2.30E-49 | -1.69E-46 |
| MS.gene051914 | MS.gene52363 | 0.801392 | 9.20E-49 | -1.69E-46 |
| MS.gene052308 | MS.gene52363 | 0.828199 | 1.03E-54 | -1.69E-46 |
| MS.gene053108 | MS.gene52363 | 0.800454 | 1.43E-48 | -1.69E-46 |
| MS.gene053173 | MS.gene52363 | 0.812238 | 4.69E-51 | -1.69E-46 |
| MS.gene053348 | MS.gene52363 | 0.809588 | 1.76E-50 | -1.69E-46 |
| MS.gene054551 | MS.gene52363 | 0.820079 | 8.29E-53 | -1.69E-46 |
| MS.gene054593 | MS.gene52363 | 0.830321 | 3.14E-55 | -1.69E-46 |
| MS.gene054633 | MS.gene52363 | 0.834933 | 2.25E-56 | -1.69E-46 |
| MS.gene054850 | MS.gene52363 | 0.821258 | 4.44E-53 | -1.69E-46 |
| MS.gene054884 | MS.gene52363 | 0.81268 | 3.75E-51 | -1.69E-46 |
| MS.gene054941 | MS.gene52363 | 0.821931 | 3.10E-53 | -1.69E-46 |
| MS.gene05652 | MS.gene52363 | 0.836271 | 1.03E-56 | -1.69E-46 |
| MS.gene056618 | MS.gene52363 | 0.80772 | 4.40E-50 | -1.69E-46 |
| MS.gene056678 | MS.gene52363 | 0.807026 | 6.18E-50 | -1.69E-46 |
| MS.gene057356 | MS.gene52363 | 0.801174 | 1.02E-48 | -1.69E-46 |
| MS.gene057669 | MS.gene52363 | 0.804486 | 2.11E-49 | -1.69E-46 |
| MS.gene058128 | MS.gene52363 | 0.802521 | 5.39E-49 | -1.69E-46 |
| MS.gene058853 | MS.gene52363 | 0.834251 | 3.34E-56 | -1.69E-46 |
| MS.gene05926 | MS.gene52363 | 0.838067 | 3.58E-57 | -1.69E-46 |
| MS.gene059553 | MS.gene52363 | 0.804424 | 2.17E-49 | -1.69E-46 |
| MS.gene05960 | MS.gene52363 | 0.810859 | 9.35E-51 | -1.69E-46 |
| MS.gene059616 | MS.gene52363 | 0.822437 | 2.37E-53 | -1.69E-46 |
| MS.gene06093 | MS.gene52363 | 0.801197 | 1.01E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52363.t1 | MTR_3g074260 | 98.810 | 252 | 3 | 0 | 3 | 254 | 37 | 288 | 0.0 | 498 |
| MS.gene52363.t1 | MTR_3g074260 | 100.000 | 216 | 0 | 0 | 39 | 254 | 1 | 216 | 1.58e-155 | 431 |
| MS.gene52363.t1 | MTR_3g074260 | 98.171 | 164 | 3 | 0 | 3 | 166 | 37 | 200 | 3.13e-114 | 326 |
| MS.gene52363.t1 | MTR_3g087250 | 59.328 | 268 | 90 | 5 | 3 | 254 | 35 | 299 | 2.04e-94 | 280 |
| MS.gene52363.t1 | MTR_0276s0040 | 48.897 | 272 | 110 | 8 | 2 | 251 | 31 | 295 | 2.95e-63 | 201 |
| MS.gene52363.t1 | MTR_3g036400 | 87.097 | 62 | 8 | 0 | 39 | 100 | 1 | 62 | 2.55e-30 | 108 |
| MS.gene52363.t1 | MTR_7g008860 | 84.211 | 57 | 9 | 0 | 39 | 95 | 1 | 57 | 3.22e-27 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52363.t1 | AT1G78150 | 67.470 | 249 | 64 | 3 | 7 | 254 | 42 | 274 | 2.01e-109 | 317 |
| MS.gene52363.t1 | AT1G78150 | 67.470 | 249 | 64 | 3 | 7 | 254 | 42 | 274 | 2.01e-109 | 317 |
| MS.gene52363.t1 | AT1G35780 | 68.872 | 257 | 66 | 8 | 3 | 254 | 39 | 286 | 3.39e-107 | 311 |
| MS.gene52363.t1 | AT1G78150 | 60.432 | 278 | 64 | 4 | 7 | 254 | 42 | 303 | 6.17e-103 | 301 |
| MS.gene52363.t1 | AT4G39860 | 57.678 | 267 | 95 | 4 | 3 | 254 | 36 | 299 | 1.49e-95 | 282 |
| MS.gene52363.t1 | AT4G39860 | 57.678 | 267 | 95 | 4 | 3 | 254 | 36 | 299 | 1.49e-95 | 282 |
| MS.gene52363.t1 | AT4G39860 | 57.678 | 267 | 95 | 4 | 3 | 254 | 36 | 299 | 1.49e-95 | 282 |
| MS.gene52363.t1 | AT4G39860 | 57.303 | 267 | 95 | 5 | 3 | 254 | 36 | 298 | 6.15e-93 | 276 |
| MS.gene52363.t1 | AT1G35780 | 65.611 | 221 | 62 | 8 | 39 | 254 | 1 | 212 | 1.19e-82 | 246 |
| MS.gene52363.t1 | AT1G35780 | 65.611 | 221 | 62 | 8 | 39 | 254 | 1 | 212 | 1.19e-82 | 246 |
| MS.gene52363.t1 | AT1G35780 | 65.611 | 221 | 62 | 8 | 39 | 254 | 1 | 212 | 1.19e-82 | 246 |
| MS.gene52363.t1 | AT2G22270 | 43.046 | 302 | 117 | 13 | 3 | 254 | 32 | 328 | 1.17e-55 | 181 |
| MS.gene52363.t1 | AT2G22270 | 43.206 | 287 | 109 | 12 | 17 | 254 | 8 | 289 | 2.47e-53 | 174 |
Find 80 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGACAGTTCTGCAAATTTC+TGG | 0.130552 | 3.1:-60854215 | None:intergenic |
| ATTGGCCGAGGCTTGATTTC+TGG | 0.202035 | 3.1:-60853739 | None:intergenic |
| GGGTTGGCACTGCCATCCTC+TGG | 0.241194 | 3.1:-60853359 | None:intergenic |
| TCCAATATGCGAGGAGTAAT+TGG | 0.251827 | 3.1:-60853757 | None:intergenic |
| GCCAATTACTCCTCGCATAT+TGG | 0.297633 | 3.1:+60853756 | MS.gene52363:CDS |
| TCAGGAAACAACATATTTAA+AGG | 0.318062 | 3.1:+60854234 | MS.gene52363:CDS |
| TAAGGTGGTGTTTGGTGGTC+AGG | 0.358985 | 3.1:+60852423 | MS.gene52363:CDS |
| GGGATCAGTAAGGTGGTGTT+TGG | 0.367307 | 3.1:+60852415 | MS.gene52363:CDS |
| TACCTGGTACATGCGAATTC+CGG | 0.380145 | 3.1:-60853396 | None:intergenic |
| GCGTGAGCTCAGTGGAACTA+TGG | 0.388798 | 3.1:+60853633 | MS.gene52363:CDS |
| TAAAGGCGACTCTCCACCTT+TGG | 0.396203 | 3.1:+60854251 | MS.gene52363:CDS |
| GGTTGGCACTGCCATCCTCT+GGG | 0.400803 | 3.1:-60853358 | None:intergenic |
| TCACGCTGCTTGGCCACCTC+AGG | 0.402765 | 3.1:-60853616 | None:intergenic |
| TATAAGATGAAGGAGATTAC+TGG | 0.435048 | 3.1:+60853299 | MS.gene52363:CDS |
| AAATTGCAGCAAGCTATTGC+GGG | 0.436764 | 3.1:+60853532 | MS.gene52363:intron |
| AATTTCTAGAAAGCCTTGTT+CGG | 0.448306 | 3.1:+60853274 | MS.gene52363:intron |
| GGAATCAGTCATATCTCCTT+TGG | 0.451670 | 3.1:+60853553 | MS.gene52363:CDS |
| CAGAAATTTGCAGAACTGTC+AGG | 0.455797 | 3.1:+60854216 | MS.gene52363:CDS |
| TGGGGCCTCATCTTCTCCAT+TGG | 0.457851 | 3.1:-60853339 | None:intergenic |
| TGTTACCTTGGTTAGGGTGA+TGG | 0.460687 | 3.1:+60854135 | MS.gene52363:intron |
| GCAATGCTGCTCTCGCCACC+AGG | 0.462130 | 3.1:-60854384 | None:intergenic |
| AACCCTTCAGCAAATAAAAC+CGG | 0.473858 | 3.1:+60853377 | MS.gene52363:CDS |
| GCAAAACTCCGAGAGATAAG+TGG | 0.475331 | 3.1:+60854297 | MS.gene52363:CDS |
| TCCACTGAGCTCACGCTGCT+TGG | 0.483660 | 3.1:-60853626 | None:intergenic |
| ATCAGTAAGGTGGTGTTTGG+TGG | 0.488066 | 3.1:+60852418 | MS.gene52363:CDS |
| GCGGAGTCTAGAGACTATCT+AGG | 0.489892 | 3.1:+60854345 | MS.gene52363:CDS |
| GCCACCTCAGGCAATGAAGC+AGG | 0.491990 | 3.1:-60853604 | None:intergenic |
| GGAGATCAAGACGCTACTAC+AGG | 0.494262 | 3.1:+60854156 | MS.gene52363:CDS |
| CTCGCATATTGGAGTTGAAA+GGG | 0.499999 | 3.1:+60853767 | MS.gene52363:CDS |
| GAGACTATCTAGGCGGCGTA+CGG | 0.501215 | 3.1:+60854355 | MS.gene52363:CDS |
| TTGAAAGGGAGCATAGGCCT+TGG | 0.501700 | 3.1:+60853781 | MS.gene52363:CDS |
| TGGCGAGAGCAGCATTGCGC+TGG | 0.511766 | 3.1:+60854389 | MS.gene52363:CDS |
| GGCGGCGTACGGAAGCCGCC+TGG | 0.516854 | 3.1:+60854366 | MS.gene52363:CDS |
| ATGAAGGAGATTACTGGCAG+TGG | 0.519536 | 3.1:+60853305 | MS.gene52363:CDS |
| AAAATTGCAGCAAGCTATTG+CGG | 0.532841 | 3.1:+60853531 | MS.gene52363:intron |
| GCAAAGTGCAAGGAGCTTAG+TGG | 0.534359 | 3.1:+60853694 | MS.gene52363:CDS |
| GAAGATGAGGCCCCAGAGGA+TGG | 0.538465 | 3.1:+60853347 | MS.gene52363:CDS |
| AACCGGAATTCGCATGTACC+AGG | 0.538686 | 3.1:+60853394 | MS.gene52363:CDS |
| CACCACCAGAAATCAAGCCT+CGG | 0.541618 | 3.1:+60853734 | MS.gene52363:CDS |
| GGGAGTAACATCTTTGCTGA+TGG | 0.546711 | 3.1:+60854318 | MS.gene52363:CDS |
| CGAGGCTTGATTTCTGGTGG+TGG | 0.550569 | 3.1:-60853733 | None:intergenic |
| GCCTGCTTCATTGCCTGAGG+TGG | 0.550736 | 3.1:+60853603 | MS.gene52363:CDS |
| AACACTCTCTTCCTCGCCAA+AGG | 0.557790 | 3.1:-60853569 | None:intergenic |
| AGGTTGAAAGCTTAAACAAA+CGG | 0.565199 | 3.1:+60852458 | MS.gene52363:CDS |
| TGTTACTCCCACTTATCTCT+CGG | 0.571485 | 3.1:-60854305 | None:intergenic |
| TTGTTCGGAGTATAAGATGA+AGG | 0.575022 | 3.1:+60853289 | MS.gene52363:CDS |
| TAACATCTTTGCTGATGGAA+AGG | 0.580663 | 3.1:+60854323 | MS.gene52363:CDS |
| ATGCGAGGAGTAATTGGCCG+AGG | 0.582756 | 3.1:-60853751 | None:intergenic |
| TTCATCTTATACTCCGAACA+AGG | 0.583995 | 3.1:-60853287 | None:intergenic |
| CCTCGCATATTGGAGTTGAA+AGG | 0.584117 | 3.1:+60853766 | MS.gene52363:CDS |
| GTTGGCACTGCCATCCTCTG+GGG | 0.593210 | 3.1:-60853357 | None:intergenic |
| GATTTCTCAGCAGCCAAAGG+TGG | 0.597007 | 3.1:-60854264 | None:intergenic |
| GGCCGAGGCTTGATTTCTGG+TGG | 0.598668 | 3.1:-60853736 | None:intergenic |
| CTGCTGAGAAATCATTGAGT+GGG | 0.598754 | 3.1:+60854274 | MS.gene52363:CDS |
| GCTTTCTGATGCAAAGTGCA+AGG | 0.600086 | 3.1:+60853684 | MS.gene52363:CDS |
| GAGATCAAGACGCTACTACA+GGG | 0.606115 | 3.1:+60854157 | MS.gene52363:CDS |
| TTGGAGTTGAAAGGGAGCAT+AGG | 0.609664 | 3.1:+60853775 | MS.gene52363:CDS |
| CAAAACTCCGAGAGATAAGT+GGG | 0.610976 | 3.1:+60854298 | MS.gene52363:CDS |
| AGTGGAATATTTGTAGCCAA+TGG | 0.611359 | 3.1:+60853323 | MS.gene52363:CDS |
| ATGCTGCTCTCGCCACCAGG+CGG | 0.612447 | 3.1:-60854381 | None:intergenic |
| TGCATACATGACTTTCTCCA+AGG | 0.621174 | 3.1:-60853798 | None:intergenic |
| TGTAGCCAATGGAGAAGATG+AGG | 0.623609 | 3.1:+60853334 | MS.gene52363:CDS |
| GCCGTCGGATGGGATCAGTA+AGG | 0.631418 | 3.1:+60852405 | MS.gene52363:intron |
| AATGATTTCTCAGCAGCCAA+AGG | 0.633502 | 3.1:-60854267 | None:intergenic |
| GCCAAGCAGCGTGAGCTCAG+TGG | 0.638579 | 3.1:+60853625 | MS.gene52363:CDS |
| TGGTCAGGTTACTGATGAAG+AGG | 0.639819 | 3.1:+60852438 | MS.gene52363:CDS |
| AAAGCCTGCTTCATTGCCTG+AGG | 0.644684 | 3.1:+60853600 | MS.gene52363:CDS |
| GGCGTACGGAAGCCGCCTGG+TGG | 0.647825 | 3.1:+60854369 | MS.gene52363:CDS |
| CATCTTTGCTGATGGAAAGG+CGG | 0.648644 | 3.1:+60854326 | MS.gene52363:CDS |
| CAGTCATATCTCCTTTGGCG+AGG | 0.651432 | 3.1:+60853558 | MS.gene52363:CDS |
| GTCGGATGGGATCAGTAAGG+TGG | 0.653944 | 3.1:+60852408 | MS.gene52363:CDS |
| GCTGCTGAGAAATCATTGAG+TGG | 0.655595 | 3.1:+60854273 | MS.gene52363:CDS |
| CCTTTCAACTCCAATATGCG+AGG | 0.661806 | 3.1:-60853766 | None:intergenic |
| TGGAGAAGATGAGGCCCCAG+AGG | 0.662591 | 3.1:+60853343 | MS.gene52363:CDS |
| AGATCAAGACGCTACTACAG+GGG | 0.669255 | 3.1:+60854158 | MS.gene52363:CDS |
| ACCTTACTGATCCCATCCGA+CGG | 0.677868 | 3.1:-60852406 | None:intergenic |
| TTTGGCGTGTGAATATGGAG+AGG | 0.686240 | 3.1:+60852174 | None:intergenic |
| TGCTGAGAAATCATTGAGTG+GGG | 0.706728 | 3.1:+60854275 | MS.gene52363:CDS |
| GAATATGGAGAGGAACACAC+CGG | 0.761577 | 3.1:+60852184 | None:intergenic |
| GAGTCTAGAGACTATCTAGG+CGG | 0.855715 | 3.1:+60854348 | MS.gene52363:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGAATTAGCTAAAAATA+AGG | - | chr3.1:60852503-60852522 | None:intergenic | 15.0% |
| !! | ATAAAAATAAATACCTGTCA+CGG | + | chr3.1:60852563-60852582 | MS.gene52363:intron | 20.0% |
| !! | GCTTAAATATGTTTCATTTA+TGG | + | chr3.1:60853170-60853189 | MS.gene52363:intron | 20.0% |
| !! | TATAATACCTTCTTATTAGA+TGG | - | chr3.1:60852751-60852770 | None:intergenic | 20.0% |
| !! | TATTTAGTATCATACATACA+GGG | + | chr3.1:60853022-60853041 | MS.gene52363:intron | 20.0% |
| !! | TTATTTACCATCTAATAAGA+AGG | + | chr3.1:60852741-60852760 | MS.gene52363:intron | 20.0% |
| !! | TTATTTAGTATCATACATAC+AGG | + | chr3.1:60853021-60853040 | MS.gene52363:intron | 20.0% |
| !!! | ATCTAATAAGAAGGTATTAT+AGG | + | chr3.1:60852750-60852769 | MS.gene52363:intron | 20.0% |
| !!! | ATTCATATAGTACTTTGTTT+AGG | + | chr3.1:60853939-60853958 | MS.gene52363:intron | 20.0% |
| !!! | GATCCAAATTTTAAAATTGA+GGG | - | chr3.1:60853887-60853906 | None:intergenic | 20.0% |
| !!! | TGATCCAAATTTTAAAATTG+AGG | - | chr3.1:60853888-60853907 | None:intergenic | 20.0% |
| ! | CTTATTAGATGGTAAATAAC+AGG | - | chr3.1:60852740-60852759 | None:intergenic | 25.0% |
| ! | GAAATCACATTTGCAATATT+GGG | + | chr3.1:60852896-60852915 | MS.gene52363:intron | 25.0% |
| ! | GATACTAAATAACTCAATGT+GGG | - | chr3.1:60853013-60853032 | None:intergenic | 25.0% |
| ! | TCAGGAAACAACATATTTAA+AGG | + | chr3.1:60854234-60854253 | MS.gene52363:CDS | 25.0% |
| ! | TGATACTAAATAACTCAATG+TGG | - | chr3.1:60853014-60853033 | None:intergenic | 25.0% |
| !! | AATGCATGTAATGATTTTAC+TGG | + | chr3.1:60853969-60853988 | MS.gene52363:intron | 25.0% |
| !! | TATAGTTTTTGCCTAAATTG+CGG | + | chr3.1:60853051-60853070 | MS.gene52363:intron | 25.0% |
| !!! | CATTTTTACCATTTAGAGTA+GGG | + | chr3.1:60852874-60852893 | MS.gene52363:intron | 25.0% |
| !!! | TCATTTTTACCATTTAGAGT+AGG | + | chr3.1:60852873-60852892 | MS.gene52363:intron | 25.0% |
| !!! | TGACCCTCAATTTTAAAATT+TGG | + | chr3.1:60853881-60853900 | MS.gene52363:intron | 25.0% |
| AAAATGACTGCTAATGTTGT+AGG | - | chr3.1:60852966-60852985 | None:intergenic | 30.0% | |
| AAGCTATAGTTATTGCATCA+TGG | + | chr3.1:60853998-60854017 | MS.gene52363:intron | 30.0% | |
| AATAACAACGAAATGTTACG+TGG | - | chr3.1:60852338-60852357 | None:intergenic | 30.0% | |
| AATTTCAATGAGTGGATCTA+TGG | + | chr3.1:60852808-60852827 | MS.gene52363:intron | 30.0% | |
| ACAAACAAAACCTGAAACAA+CGG | - | chr3.1:60852607-60852626 | None:intergenic | 30.0% | |
| ACGTAACATTTCGTTGTTAT+TGG | + | chr3.1:60852337-60852356 | MS.gene52363:intron | 30.0% | |
| AGGTTGAAAGCTTAAACAAA+CGG | + | chr3.1:60852458-60852477 | MS.gene52363:CDS | 30.0% | |
| AGTTGTTGAATTTCAATGAG+TGG | + | chr3.1:60852800-60852819 | MS.gene52363:intron | 30.0% | |
| CAAGGTAACAACACAATAAA+TGG | - | chr3.1:60854125-60854144 | None:intergenic | 30.0% | |
| GGAAATCACATTTGCAATAT+TGG | + | chr3.1:60852895-60852914 | MS.gene52363:intron | 30.0% | |
| TATAAGATGAAGGAGATTAC+TGG | + | chr3.1:60853299-60853318 | MS.gene52363:CDS | 30.0% | |
| TATAGGTGAAAAGGGTTAAA+TGG | + | chr3.1:60852767-60852786 | MS.gene52363:intron | 30.0% | |
| TGGATCATATTTCAGTAACT+TGG | + | chr3.1:60853901-60853920 | MS.gene52363:intron | 30.0% | |
| ! | CATTTATTGTGTTGTTACCT+TGG | + | chr3.1:60854123-60854142 | MS.gene52363:intron | 30.0% |
| ! | CTAAAAGGCAAAAGTATGTT+TGG | - | chr3.1:60853119-60853138 | None:intergenic | 30.0% |
| ! | TGATCTAGGATTATTAGTTC+AGG | - | chr3.1:60853196-60853215 | None:intergenic | 30.0% |
| ! | TTGCTAACCTGAATTGTTTT+GGG | + | chr3.1:60853831-60853850 | MS.gene52363:intron | 30.0% |
| !! | AATTTCTAGAAAGCCTTGTT+CGG | + | chr3.1:60853274-60853293 | MS.gene52363:intron | 30.0% |
| !! | AGAAGGTATTATAGGTGAAA+AGG | + | chr3.1:60852758-60852777 | MS.gene52363:intron | 30.0% |
| !! | AGACTATCATAGTTTTGCAA+TGG | + | chr3.1:60853472-60853491 | MS.gene52363:intron | 30.0% |
| !! | GAAGGTATTATAGGTGAAAA+GGG | + | chr3.1:60852759-60852778 | MS.gene52363:intron | 30.0% |
| !!! | TTTTTTTGTTCCGTTGTTTC+AGG | + | chr3.1:60852594-60852613 | MS.gene52363:intron | 30.0% |
| AAAATGTCCTACCGCAATTT+AGG | - | chr3.1:60853065-60853084 | None:intergenic | 35.0% | |
| AAAATTGCAGCAAGCTATTG+CGG | + | chr3.1:60853531-60853550 | MS.gene52363:intron | 35.0% | |
| AACCCTTCAGCAAATAAAAC+CGG | + | chr3.1:60853377-60853396 | MS.gene52363:CDS | 35.0% | |
| AGTGGAATATTTGTAGCCAA+TGG | + | chr3.1:60853323-60853342 | MS.gene52363:CDS | 35.0% | |
| CTTACAAAAAACGCTATACC+TGG | - | chr3.1:60853415-60853434 | None:intergenic | 35.0% | |
| GTAATCACCCAAAACAATTC+AGG | - | chr3.1:60853841-60853860 | None:intergenic | 35.0% | |
| TAACATCTTTGCTGATGGAA+AGG | + | chr3.1:60854323-60854342 | MS.gene52363:CDS | 35.0% | |
| TGTGATTTCCCTACTCTAAA+TGG | - | chr3.1:60852885-60852904 | None:intergenic | 35.0% | |
| TTCATCTTATACTCCGAACA+AGG | - | chr3.1:60853290-60853309 | None:intergenic | 35.0% | |
| TTGTTCGGAGTATAAGATGA+AGG | + | chr3.1:60853289-60853308 | MS.gene52363:CDS | 35.0% | |
| ! | AATCCTAGATCAGTTTTGCT+TGG | + | chr3.1:60853204-60853223 | MS.gene52363:intron | 35.0% |
| ! | ATTGTGTTGTTACCTTGGTT+AGG | + | chr3.1:60854128-60854147 | MS.gene52363:intron | 35.0% |
| ! | CAAAAGTATGTTTGGATTCG+TGG | - | chr3.1:60853111-60853130 | None:intergenic | 35.0% |
| ! | GTTGCTAACCTGAATTGTTT+TGG | + | chr3.1:60853830-60853849 | MS.gene52363:intron | 35.0% |
| ! | TTCAGGTTAGCAACTTATAG+TGG | - | chr3.1:60853824-60853843 | None:intergenic | 35.0% |
| ! | TTGTGTTGTTACCTTGGTTA+GGG | + | chr3.1:60854129-60854148 | MS.gene52363:intron | 35.0% |
| !!! | ATTCCGGTTTTATTTGCTGA+AGG | - | chr3.1:60853383-60853402 | None:intergenic | 35.0% |
| !!! | CAGGTATAGCGTTTTTTGTA+AGG | + | chr3.1:60853413-60853432 | MS.gene52363:intron | 35.0% |
| !!! | TTCCGGTTTTATTTGCTGAA+GGG | - | chr3.1:60853382-60853401 | None:intergenic | 35.0% |
| !!! | TTCTTTGCTGTTTTCAGAAC+TGG | - | chr3.1:60854186-60854205 | None:intergenic | 35.0% |
| AAATTGCAGCAAGCTATTGC+GGG | + | chr3.1:60853532-60853551 | MS.gene52363:intron | 40.0% | |
| AATGATTTCTCAGCAGCCAA+AGG | - | chr3.1:60854270-60854289 | None:intergenic | 40.0% | |
| ACACCAAGCAAAACTGATCT+AGG | - | chr3.1:60853210-60853229 | None:intergenic | 40.0% | |
| ACCAAGCAATTGAACTCAAG+CGG | - | chr3.1:60852376-60852395 | None:intergenic | 40.0% | |
| CAAAACTCCGAGAGATAAGT+GGG | + | chr3.1:60854298-60854317 | MS.gene52363:CDS | 40.0% | |
| CAACTGCAGATCTACTTGTT+TGG | + | chr3.1:60852225-60852244 | MS.gene52363:intron | 40.0% | |
| CAGAAATTTGCAGAACTGTC+AGG | + | chr3.1:60854216-60854235 | MS.gene52363:CDS | 40.0% | |
| CAGTTAATAAAGCAGCAGCA+GGG | - | chr3.1:60853151-60853170 | None:intergenic | 40.0% | |
| CTCGCATATTGGAGTTGAAA+GGG | + | chr3.1:60853767-60853786 | MS.gene52363:CDS | 40.0% | |
| CTGACAGTTCTGCAAATTTC+TGG | - | chr3.1:60854218-60854237 | None:intergenic | 40.0% | |
| CTGCTGAGAAATCATTGAGT+GGG | + | chr3.1:60854274-60854293 | MS.gene52363:CDS | 40.0% | |
| GCAGGGCAGATTAAACTAAA+AGG | - | chr3.1:60853134-60853153 | None:intergenic | 40.0% | |
| GGAATCAGTCATATCTCCTT+TGG | + | chr3.1:60853553-60853572 | MS.gene52363:CDS | 40.0% | |
| TCACATTTGCAATATTGGGC+TGG | + | chr3.1:60852900-60852919 | MS.gene52363:intron | 40.0% | |
| TCCAATATGCGAGGAGTAAT+TGG | - | chr3.1:60853760-60853779 | None:intergenic | 40.0% | |
| TGCATACATGACTTTCTCCA+AGG | - | chr3.1:60853801-60853820 | None:intergenic | 40.0% | |
| TGCTGAGAAATCATTGAGTG+GGG | + | chr3.1:60854275-60854294 | MS.gene52363:CDS | 40.0% | |
| TGTTACTCCCACTTATCTCT+CGG | - | chr3.1:60854308-60854327 | None:intergenic | 40.0% | |
| ! | GTTTTTGCCTAAATTGCGGT+AGG | + | chr3.1:60853055-60853074 | MS.gene52363:intron | 40.0% |
| !!! | GGTTTTATTTGCTGAAGGGT+TGG | - | chr3.1:60853378-60853397 | None:intergenic | 40.0% |
| AAAAACACACAGACCGTGAC+AGG | - | chr3.1:60852579-60852598 | None:intergenic | 45.0% | |
| ACCGCTTGAGTTCAATTGCT+TGG | + | chr3.1:60852372-60852391 | MS.gene52363:intron | 45.0% | |
| ACTTACCTGATGAGAACGAG+TGG | - | chr3.1:60852294-60852313 | None:intergenic | 45.0% | |
| AGATCAAGACGCTACTACAG+GGG | + | chr3.1:60854158-60854177 | MS.gene52363:CDS | 45.0% | |
| AGATCTGCAGTTGAAGTGTG+TGG | - | chr3.1:60852218-60852237 | None:intergenic | 45.0% | |
| ATCAGTAAGGTGGTGTTTGG+TGG | + | chr3.1:60852418-60852437 | MS.gene52363:CDS | 45.0% | |
| ATGAAGGAGATTACTGGCAG+TGG | + | chr3.1:60853305-60853324 | MS.gene52363:CDS | 45.0% | |
| CATCTTTGCTGATGGAAAGG+CGG | + | chr3.1:60854326-60854345 | MS.gene52363:CDS | 45.0% | |
| CCTCGCATATTGGAGTTGAA+AGG | + | chr3.1:60853766-60853785 | MS.gene52363:CDS | 45.0% | |
| CCTTTCAACTCCAATATGCG+AGG | - | chr3.1:60853769-60853788 | None:intergenic | 45.0% | |
| GAGATCAAGACGCTACTACA+GGG | + | chr3.1:60854157-60854176 | MS.gene52363:CDS | 45.0% | |
| GAGTCTAGAGACTATCTAGG+CGG | + | chr3.1:60854348-60854367 | MS.gene52363:CDS | 45.0% | |
| GCAAAACTCCGAGAGATAAG+TGG | + | chr3.1:60854297-60854316 | MS.gene52363:CDS | 45.0% | |
| GCAGTTAATAAAGCAGCAGC+AGG | - | chr3.1:60853152-60853171 | None:intergenic | 45.0% | |
| GCCAATTACTCCTCGCATAT+TGG | + | chr3.1:60853756-60853775 | MS.gene52363:CDS | 45.0% | |
| GCTGCTGAGAAATCATTGAG+TGG | + | chr3.1:60854273-60854292 | MS.gene52363:CDS | 45.0% | |
| GCTTTCTGATGCAAAGTGCA+AGG | + | chr3.1:60853684-60853703 | MS.gene52363:CDS | 45.0% | |
| GGAGCTGGAGAATCATTGAT+TGG | - | chr3.1:60852260-60852279 | None:intergenic | 45.0% | |
| GGGAGTAACATCTTTGCTGA+TGG | + | chr3.1:60854318-60854337 | MS.gene52363:CDS | 45.0% | |
| TACCTGGTACATGCGAATTC+CGG | - | chr3.1:60853399-60853418 | None:intergenic | 45.0% | |
| TGGTCAGGTTACTGATGAAG+AGG | + | chr3.1:60852438-60852457 | MS.gene52363:CDS | 45.0% | |
| TGTAGCCAATGGAGAAGATG+AGG | + | chr3.1:60853334-60853353 | MS.gene52363:CDS | 45.0% | |
| TGTTACCTTGGTTAGGGTGA+TGG | + | chr3.1:60854135-60854154 | MS.gene52363:intron | 45.0% | |
| ! | CTTGGTGAATTTTCAGCCGT+CGG | + | chr3.1:60852390-60852409 | MS.gene52363:intron | 45.0% |
| ! | TGAATTTTCAGCCGTCGGAT+GGG | + | chr3.1:60852395-60852414 | MS.gene52363:intron | 45.0% |
| ! | TTGGAGTTGAAAGGGAGCAT+AGG | + | chr3.1:60853775-60853794 | MS.gene52363:CDS | 45.0% |
| !!! | GGCAATGAAGCAGGCTTTTT+TGG | - | chr3.1:60853598-60853617 | None:intergenic | 45.0% |
| !!! | GTTTTTTGTCCAACGTTGCG+TGG | + | chr3.1:60853228-60853247 | MS.gene52363:intron | 45.0% |
| AAAGCCTGCTTCATTGCCTG+AGG | + | chr3.1:60853600-60853619 | MS.gene52363:CDS | 50.0% | |
| AACACTCTCTTCCTCGCCAA+AGG | - | chr3.1:60853572-60853591 | None:intergenic | 50.0% | |
| AACCGGAATTCGCATGTACC+AGG | + | chr3.1:60853394-60853413 | MS.gene52363:CDS | 50.0% | |
| ACCTTACTGATCCCATCCGA+CGG | - | chr3.1:60852409-60852428 | None:intergenic | 50.0% | |
| ATTGGCCGAGGCTTGATTTC+TGG | - | chr3.1:60853742-60853761 | None:intergenic | 50.0% | |
| CACCACCAGAAATCAAGCCT+CGG | + | chr3.1:60853734-60853753 | MS.gene52363:CDS | 50.0% | |
| CAGTCATATCTCCTTTGGCG+AGG | + | chr3.1:60853558-60853577 | MS.gene52363:CDS | 50.0% | |
| GAAGTGTGTGGTTTCCTCAC+CGG | - | chr3.1:60852206-60852225 | None:intergenic | 50.0% | |
| GATCTCCATCACCCTAACCA+AGG | - | chr3.1:60854143-60854162 | None:intergenic | 50.0% | |
| GATTTCTCAGCAGCCAAAGG+TGG | - | chr3.1:60854267-60854286 | None:intergenic | 50.0% | |
| GCAAAGTGCAAGGAGCTTAG+TGG | + | chr3.1:60853694-60853713 | MS.gene52363:CDS | 50.0% | |
| GCGGAGTCTAGAGACTATCT+AGG | + | chr3.1:60854345-60854364 | MS.gene52363:CDS | 50.0% | |
| GCGTGGCTTCTGATCTTGTT+TGG | + | chr3.1:60853245-60853264 | MS.gene52363:intron | 50.0% | |
| GGAGATCAAGACGCTACTAC+AGG | + | chr3.1:60854156-60854175 | MS.gene52363:CDS | 50.0% | |
| GGGATCAGTAAGGTGGTGTT+TGG | + | chr3.1:60852415-60852434 | MS.gene52363:CDS | 50.0% | |
| TAAAGGCGACTCTCCACCTT+TGG | + | chr3.1:60854251-60854270 | MS.gene52363:CDS | 50.0% | |
| TGAGAACGAGTGGCAGAAGA+AGG | - | chr3.1:60852284-60852303 | None:intergenic | 50.0% | |
| TTCTGCCACTCGTTCTCATC+AGG | + | chr3.1:60852286-60852305 | MS.gene52363:intron | 50.0% | |
| ! | GTGAATTTTCAGCCGTCGGA+TGG | + | chr3.1:60852394-60852413 | MS.gene52363:intron | 50.0% |
| ! | TAAGGTGGTGTTTGGTGGTC+AGG | + | chr3.1:60852423-60852442 | MS.gene52363:CDS | 50.0% |
| ! | TTGAAAGGGAGCATAGGCCT+TGG | + | chr3.1:60853781-60853800 | MS.gene52363:CDS | 50.0% |
| ATGCGAGGAGTAATTGGCCG+AGG | - | chr3.1:60853754-60853773 | None:intergenic | 55.0% | |
| GAACGAGTGGCAGAAGAAGG+AGG | - | chr3.1:60852281-60852300 | None:intergenic | 55.0% | |
| GAGACTATCTAGGCGGCGTA+CGG | + | chr3.1:60854355-60854374 | MS.gene52363:CDS | 55.0% | |
| GATCAGAAGCCACGCAACGT+TGG | - | chr3.1:60853240-60853259 | None:intergenic | 55.0% | |
| GCGTGAGCTCAGTGGAACTA+TGG | + | chr3.1:60853633-60853652 | MS.gene52363:CDS | 55.0% | |
| GTCGGATGGGATCAGTAAGG+TGG | + | chr3.1:60852408-60852427 | MS.gene52363:CDS | 55.0% | |
| TGGGGCCTCATCTTCTCCAT+TGG | - | chr3.1:60853342-60853361 | None:intergenic | 55.0% | |
| !! | CGAGGCTTGATTTCTGGTGG+TGG | - | chr3.1:60853736-60853755 | None:intergenic | 55.0% |
| GAAGATGAGGCCCCAGAGGA+TGG | + | chr3.1:60853347-60853366 | MS.gene52363:CDS | 60.0% | |
| GCCACCTCAGGCAATGAAGC+AGG | - | chr3.1:60853607-60853626 | None:intergenic | 60.0% | |
| GCCGTCGGATGGGATCAGTA+AGG | + | chr3.1:60852405-60852424 | MS.gene52363:intron | 60.0% | |
| GCCTGCTTCATTGCCTGAGG+TGG | + | chr3.1:60853603-60853622 | MS.gene52363:CDS | 60.0% | |
| GGTTGGCACTGCCATCCTCT+GGG | - | chr3.1:60853361-60853380 | None:intergenic | 60.0% | |
| GTGGCAGAAGAAGGAGGAGC+TGG | - | chr3.1:60852275-60852294 | None:intergenic | 60.0% | |
| GTTGGCACTGCCATCCTCTG+GGG | - | chr3.1:60853360-60853379 | None:intergenic | 60.0% | |
| TCCACTGAGCTCACGCTGCT+TGG | - | chr3.1:60853629-60853648 | None:intergenic | 60.0% | |
| TGGAGAAGATGAGGCCCCAG+AGG | + | chr3.1:60853343-60853362 | MS.gene52363:CDS | 60.0% | |
| TGGAGAGGAACACACCGGTG+AGG | + | chr3.1:60852189-60852208 | MS.gene52363:intron | 60.0% | |
| ! | GGCCGAGGCTTGATTTCTGG+TGG | - | chr3.1:60853739-60853758 | None:intergenic | 60.0% |
| ATGCTGCTCTCGCCACCAGG+CGG | - | chr3.1:60854384-60854403 | None:intergenic | 65.0% | |
| GCAATGCTGCTCTCGCCACC+AGG | - | chr3.1:60854387-60854406 | None:intergenic | 65.0% | |
| GCCAAGCAGCGTGAGCTCAG+TGG | + | chr3.1:60853625-60853644 | MS.gene52363:CDS | 65.0% | |
| TCACGCTGCTTGGCCACCTC+AGG | - | chr3.1:60853619-60853638 | None:intergenic | 65.0% | |
| TGGCGAGAGCAGCATTGCGC+TGG | + | chr3.1:60854389-60854408 | MS.gene52363:CDS | 65.0% | |
| ! | GGGTTGGCACTGCCATCCTC+TGG | - | chr3.1:60853362-60853381 | None:intergenic | 65.0% |
| GGCGTACGGAAGCCGCCTGG+TGG | + | chr3.1:60854369-60854388 | MS.gene52363:CDS | 75.0% | |
| ! | GGCGGCGTACGGAAGCCGCC+TGG | + | chr3.1:60854366-60854385 | MS.gene52363:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 60852188 | 60854416 | 60852188 | ID=MS.gene52363 |
| chr3.1 | mRNA | 60852188 | 60854416 | 60852188 | ID=MS.gene52363.t1;Parent=MS.gene52363 |
| chr3.1 | exon | 60852188 | 60852205 | 60852188 | ID=MS.gene52363.t1.exon1;Parent=MS.gene52363.t1 |
| chr3.1 | CDS | 60852188 | 60852205 | 60852188 | ID=cds.MS.gene52363.t1;Parent=MS.gene52363.t1 |
| chr3.1 | exon | 60852406 | 60852479 | 60852406 | ID=MS.gene52363.t1.exon2;Parent=MS.gene52363.t1 |
| chr3.1 | CDS | 60852406 | 60852479 | 60852406 | ID=cds.MS.gene52363.t1;Parent=MS.gene52363.t1 |
| chr3.1 | exon | 60853283 | 60853415 | 60853283 | ID=MS.gene52363.t1.exon3;Parent=MS.gene52363.t1 |
| chr3.1 | CDS | 60853283 | 60853415 | 60853283 | ID=cds.MS.gene52363.t1;Parent=MS.gene52363.t1 |
| chr3.1 | exon | 60853541 | 60853813 | 60853541 | ID=MS.gene52363.t1.exon4;Parent=MS.gene52363.t1 |
| chr3.1 | CDS | 60853541 | 60853813 | 60853541 | ID=cds.MS.gene52363.t1;Parent=MS.gene52363.t1 |
| chr3.1 | exon | 60854150 | 60854416 | 60854150 | ID=MS.gene52363.t1.exon5;Parent=MS.gene52363.t1 |
| chr3.1 | CDS | 60854150 | 60854416 | 60854150 | ID=cds.MS.gene52363.t1;Parent=MS.gene52363.t1 |
| Gene Sequence |
| Protein sequence |
