Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54346.t1 | XP_013447780.1 | 92.5 | 268 | 20 | 0 | 1 | 268 | 1 | 268 | 1.50E-124 | 455.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54346.t1 | P93332 | 91.4 | 268 | 23 | 0 | 1 | 268 | 1 | 268 | 2.6e-125 | 449.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54346.t1 | A0A072TX72 | 92.5 | 268 | 20 | 0 | 1 | 268 | 1 | 268 | 1.1e-124 | 455.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene54346 | 0.800751 | 1.24E-48 | -1.69E-46 |
| MS.gene051996 | MS.gene54346 | 0.81399 | 1.94E-51 | -1.69E-46 |
| MS.gene052223 | MS.gene54346 | 0.815708 | 8.05E-52 | -1.69E-46 |
| MS.gene05240 | MS.gene54346 | 0.848769 | 4.96E-60 | -1.69E-46 |
| MS.gene054277 | MS.gene54346 | 0.847757 | 9.45E-60 | -1.69E-46 |
| MS.gene054742 | MS.gene54346 | 0.88583 | 5.80E-72 | -1.69E-46 |
| MS.gene055215 | MS.gene54346 | 0.815076 | 1.11E-51 | -1.69E-46 |
| MS.gene056330 | MS.gene54346 | 0.845436 | 4.07E-59 | -1.69E-46 |
| MS.gene056590 | MS.gene54346 | 0.832685 | 8.21E-56 | -1.69E-46 |
| MS.gene056591 | MS.gene54346 | 0.831184 | 1.93E-55 | -1.69E-46 |
| MS.gene056680 | MS.gene54346 | 0.806319 | 8.72E-50 | -1.69E-46 |
| MS.gene056920 | MS.gene54346 | 0.874963 | 4.48E-68 | -1.69E-46 |
| MS.gene056922 | MS.gene54346 | 0.801112 | 1.05E-48 | -1.69E-46 |
| MS.gene056923 | MS.gene54346 | 0.830165 | 3.42E-55 | -1.69E-46 |
| MS.gene056924 | MS.gene54346 | 0.806627 | 7.50E-50 | -1.69E-46 |
| MS.gene057544 | MS.gene54346 | 0.807831 | 4.17E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene54346 | 0.821643 | 3.62E-53 | -1.69E-46 |
| MS.gene060087 | MS.gene54346 | 0.844479 | 7.37E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54346.t1 | MTR_7g405730 | 97.388 | 268 | 7 | 0 | 1 | 268 | 1 | 268 | 0.0 | 526 |
| MS.gene54346.t1 | MTR_7g405710 | 80.315 | 254 | 42 | 3 | 1 | 251 | 1 | 249 | 3.84e-136 | 385 |
| MS.gene54346.t1 | MTR_5g067530 | 68.240 | 233 | 68 | 2 | 4 | 236 | 5 | 231 | 8.17e-111 | 320 |
| MS.gene54346.t1 | MTR_2g007890 | 51.408 | 284 | 109 | 5 | 1 | 259 | 4 | 283 | 2.45e-96 | 285 |
| MS.gene54346.t1 | MTR_8g096320 | 51.626 | 246 | 115 | 2 | 1 | 242 | 1 | 246 | 2.35e-85 | 255 |
| MS.gene54346.t1 | MTR_3g098910 | 48.649 | 259 | 127 | 3 | 1 | 258 | 1 | 254 | 1.93e-83 | 253 |
| MS.gene54346.t1 | MTR_8g096310 | 46.923 | 260 | 114 | 3 | 1 | 259 | 1 | 237 | 6.42e-80 | 242 |
| MS.gene54346.t1 | MTR_7g007490 | 47.876 | 259 | 116 | 2 | 2 | 260 | 3 | 242 | 5.14e-78 | 237 |
| MS.gene54346.t1 | MTR_5g092600 | 46.032 | 252 | 118 | 2 | 4 | 255 | 5 | 238 | 2.34e-74 | 227 |
| MS.gene54346.t1 | MTR_3g098930 | 54.167 | 192 | 85 | 3 | 9 | 198 | 10 | 200 | 5.32e-64 | 199 |
| MS.gene54346.t1 | MTR_8g096320 | 48.168 | 191 | 95 | 2 | 56 | 242 | 1 | 191 | 6.64e-57 | 181 |
| MS.gene54346.t1 | MTR_2g436310 | 42.593 | 216 | 124 | 0 | 9 | 224 | 5 | 220 | 2.52e-53 | 173 |
| MS.gene54346.t1 | MTR_1g029380 | 38.189 | 254 | 143 | 5 | 1 | 252 | 1 | 242 | 6.80e-46 | 154 |
| MS.gene54346.t1 | MTR_3g089125 | 36.475 | 244 | 146 | 4 | 12 | 253 | 8 | 244 | 1.99e-45 | 153 |
| MS.gene54346.t1 | MTR_6g007633 | 37.387 | 222 | 129 | 6 | 13 | 227 | 12 | 230 | 1.57e-41 | 142 |
| MS.gene54346.t1 | MTR_8g042490 | 38.009 | 221 | 127 | 3 | 13 | 231 | 18 | 230 | 2.66e-40 | 139 |
| MS.gene54346.t1 | MTR_3g080990 | 34.800 | 250 | 155 | 5 | 13 | 256 | 12 | 259 | 6.03e-40 | 139 |
| MS.gene54346.t1 | MTR_6g007637 | 39.320 | 206 | 116 | 5 | 13 | 212 | 13 | 215 | 5.26e-39 | 136 |
| MS.gene54346.t1 | MTR_1g028460 | 32.296 | 257 | 161 | 5 | 6 | 257 | 3 | 251 | 3.06e-37 | 132 |
| MS.gene54346.t1 | MTR_6g007623 | 35.909 | 220 | 134 | 5 | 13 | 227 | 9 | 226 | 3.12e-37 | 131 |
| MS.gene54346.t1 | MTR_8g099730 | 33.476 | 233 | 151 | 3 | 13 | 242 | 22 | 253 | 1.29e-36 | 130 |
| MS.gene54346.t1 | MTR_3g090950 | 30.800 | 250 | 160 | 5 | 6 | 245 | 3 | 249 | 2.22e-35 | 127 |
| MS.gene54346.t1 | MTR_2g073190 | 38.288 | 222 | 125 | 6 | 13 | 229 | 18 | 232 | 3.09e-35 | 133 |
| MS.gene54346.t1 | MTR_3g090940 | 30.924 | 249 | 161 | 5 | 6 | 245 | 3 | 249 | 1.66e-34 | 125 |
| MS.gene54346.t1 | MTR_4g106990 | 30.918 | 207 | 137 | 2 | 30 | 234 | 36 | 238 | 1.72e-26 | 103 |
| MS.gene54346.t1 | MTR_8g099730 | 30.526 | 190 | 128 | 3 | 56 | 242 | 1 | 189 | 6.27e-22 | 90.5 |
| MS.gene54346.t1 | MTR_6g007610 | 28.959 | 221 | 137 | 5 | 13 | 218 | 12 | 227 | 1.94e-20 | 87.8 |
| MS.gene54346.t1 | MTR_2g008140 | 53.846 | 52 | 22 | 1 | 35 | 86 | 19 | 68 | 2.93e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54346.t1 | AT5G13170 | 63.118 | 263 | 92 | 3 | 3 | 262 | 5 | 265 | 7.67e-113 | 327 |
| MS.gene54346.t1 | AT5G23660 | 52.364 | 275 | 119 | 3 | 4 | 268 | 6 | 278 | 1.83e-94 | 280 |
| MS.gene54346.t1 | AT3G48740 | 50.909 | 275 | 124 | 3 | 4 | 267 | 6 | 280 | 1.27e-93 | 278 |
| MS.gene54346.t1 | AT5G50790 | 48.936 | 282 | 123 | 2 | 1 | 261 | 1 | 282 | 1.86e-91 | 272 |
| MS.gene54346.t1 | AT5G50800 | 58.150 | 227 | 94 | 1 | 1 | 226 | 1 | 227 | 6.62e-85 | 256 |
| MS.gene54346.t1 | AT4G25010 | 49.643 | 280 | 124 | 4 | 1 | 263 | 1 | 280 | 7.33e-84 | 253 |
| MS.gene54346.t1 | AT2G39060 | 46.484 | 256 | 132 | 1 | 1 | 256 | 1 | 251 | 3.61e-74 | 227 |
| MS.gene54346.t1 | AT3G16690 | 39.381 | 226 | 134 | 2 | 8 | 231 | 4 | 228 | 4.64e-54 | 175 |
| MS.gene54346.t1 | AT3G16690 | 39.381 | 226 | 134 | 2 | 8 | 231 | 39 | 263 | 8.66e-54 | 175 |
| MS.gene54346.t1 | AT4G15920 | 41.827 | 208 | 120 | 1 | 9 | 215 | 5 | 212 | 3.67e-53 | 173 |
| MS.gene54346.t1 | AT1G21460 | 38.168 | 262 | 143 | 5 | 1 | 259 | 1 | 246 | 2.06e-49 | 163 |
| MS.gene54346.t1 | AT4G10850 | 34.630 | 257 | 160 | 5 | 1 | 249 | 1 | 257 | 2.57e-42 | 145 |
| MS.gene54346.t1 | AT5G53190 | 32.463 | 268 | 150 | 8 | 6 | 257 | 3 | 255 | 1.22e-37 | 133 |
| MS.gene54346.t1 | AT5G40260 | 36.123 | 227 | 136 | 6 | 3 | 221 | 2 | 227 | 6.51e-37 | 131 |
| MS.gene54346.t1 | AT1G21460 | 38.835 | 206 | 119 | 3 | 1 | 204 | 1 | 201 | 1.77e-36 | 129 |
| MS.gene54346.t1 | AT5G62850 | 34.389 | 221 | 134 | 5 | 13 | 225 | 12 | 229 | 4.18e-36 | 129 |
| MS.gene54346.t1 | AT1G66770 | 33.028 | 218 | 139 | 3 | 13 | 225 | 14 | 229 | 5.16e-34 | 124 |
| MS.gene54346.t1 | AT3G14770 | 36.726 | 226 | 121 | 8 | 13 | 228 | 18 | 231 | 1.41e-33 | 122 |
| MS.gene54346.t1 | AT5G40260 | 38.251 | 183 | 107 | 4 | 10 | 187 | 9 | 190 | 8.27e-33 | 119 |
| MS.gene54346.t1 | AT5G62850 | 35.227 | 176 | 106 | 4 | 13 | 183 | 12 | 184 | 1.09e-28 | 108 |
| MS.gene54346.t1 | AT3G16690 | 35.333 | 150 | 94 | 2 | 8 | 155 | 4 | 152 | 7.37e-28 | 106 |
| MS.gene54346.t1 | AT3G28007 | 34.928 | 209 | 132 | 3 | 13 | 218 | 12 | 219 | 1.32e-27 | 107 |
Find 62 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTCGTTCTTGGTGTTCT+TGG | 0.169280 | 7.4:-93991194 | MS.gene54346:CDS |
| CACACATCCAAATGAGTTTA+TGG | 0.188728 | 7.4:+93990942 | None:intergenic |
| CCACTTCGTGTCCAAGTTCT+TGG | 0.244317 | 7.4:-93990666 | MS.gene54346:CDS |
| TCGATTTCTTCTTGTATATA+CGG | 0.244759 | 7.4:+93991064 | None:intergenic |
| CTCATTACCATAAACTCATT+TGG | 0.319248 | 7.4:-93990949 | MS.gene54346:CDS |
| AGGTAACGTCATTTCGTTCT+TGG | 0.323739 | 7.4:-93991203 | MS.gene54346:CDS |
| CTTAACTTTCAAGTTACTTT+CGG | 0.328483 | 7.4:-93990748 | MS.gene54346:CDS |
| AATGTGTTGGGTTTCGTATT+GGG | 0.328786 | 7.4:-93990112 | MS.gene54346:CDS |
| CTTTGTTCAGCTCCATGCTT+TGG | 0.359151 | 7.4:-93991008 | MS.gene54346:CDS |
| AATACGAAACCCAACACATT+TGG | 0.368529 | 7.4:+93990115 | None:intergenic |
| AAATGTGTTGGGTTTCGTAT+TGG | 0.380441 | 7.4:-93990113 | MS.gene54346:CDS |
| CACAAACCCATCCAAGAACT+TGG | 0.408159 | 7.4:+93990655 | None:intergenic |
| ATTTAAACTCCAGAGCCAAT+AGG | 0.432197 | 7.4:+93989908 | None:intergenic |
| TTCGTGTCCAAGTTCTTGGA+TGG | 0.434485 | 7.4:-93990662 | MS.gene54346:CDS |
| ATACGAAACCCAACACATTT+GGG | 0.439248 | 7.4:+93990116 | None:intergenic |
| TGCTGCTGTATGCAATCTAT+AGG | 0.452278 | 7.4:-93990078 | MS.gene54346:CDS |
| AATAATACCCTTGCATCTCT+TGG | 0.455895 | 7.4:+93990880 | None:intergenic |
| GTTCAAAGTGAGGAACCTAT+TGG | 0.474459 | 7.4:-93989923 | MS.gene54346:CDS |
| AGTGAGGAACCTATTGGCTC+TGG | 0.490260 | 7.4:-93989917 | MS.gene54346:CDS |
| GTACATACCACAATGCTTAG+TGG | 0.491986 | 7.4:+93990603 | None:intergenic |
| GCCACAATGTGGTTTGGCTA+CGG | 0.514248 | 7.4:-93990415 | MS.gene54346:CDS |
| TTGAGTGCCACAATGTGGTT+TGG | 0.514750 | 7.4:-93990421 | MS.gene54346:CDS |
| TCGTGTCCAAGTTCTTGGAT+GGG | 0.519498 | 7.4:-93990661 | MS.gene54346:CDS |
| GGCCATCAGTCACAACACTT+TGG | 0.519950 | 7.4:-93991706 | MS.gene54346:CDS |
| CTGAACAAAGCTACTAGGTA+AGG | 0.520832 | 7.4:+93991021 | None:intergenic |
| TGGAGCTGAACAAAGCTACT+AGG | 0.521833 | 7.4:+93991016 | None:intergenic |
| CTGCAAAGACACTAACACTA+AGG | 0.526938 | 7.4:+93990628 | None:intergenic |
| GTGCAGCTCCCAAATGTGTT+GGG | 0.530668 | 7.4:-93990124 | MS.gene54346:intron |
| GAACAAGGGTGATGATAATG+AGG | 0.540496 | 7.4:-93989951 | MS.gene54346:CDS |
| ATGCAATCTATAGGAATGGT+GGG | 0.547366 | 7.4:-93990069 | MS.gene54346:CDS |
| CAAATGAGTTTATGGTAATG+AGG | 0.551806 | 7.4:+93990950 | None:intergenic |
| CATAAACTCATTTGGATGTG+TGG | 0.553344 | 7.4:-93990941 | MS.gene54346:CDS |
| GTTACTTTCGGCAATGAACG+TGG | 0.564481 | 7.4:-93990736 | MS.gene54346:CDS |
| TACAAGAAGAAATCGACAGA+GGG | 0.564739 | 7.4:-93991057 | MS.gene54346:CDS |
| GACACGAAGTGGACCATGCA+CGG | 0.579340 | 7.4:+93990677 | None:intergenic |
| TGGCTACGGTCTCTTCCTCA+AGG | 0.581206 | 7.4:-93990401 | MS.gene54346:CDS |
| TGTGCAGCTCCCAAATGTGT+TGG | 0.581637 | 7.4:-93990125 | MS.gene54346:intron |
| TATTGTTATAGAGACCCAAT+CGG | 0.581864 | 7.4:-93989996 | MS.gene54346:CDS |
| GATGTACAATATGATGTAGA+TGG | 0.583280 | 7.4:+93990912 | None:intergenic |
| GTCACTAACTATGCCGTGCA+TGG | 0.586420 | 7.4:-93990690 | MS.gene54346:CDS |
| CCAAGAACTTGGACACGAAG+TGG | 0.588617 | 7.4:+93990666 | None:intergenic |
| CGGCATAGTTAGTGACTATG+AGG | 0.591246 | 7.4:+93990697 | None:intergenic |
| GACTATGAGGATCAAAGCAA+AGG | 0.596059 | 7.4:+93990710 | None:intergenic |
| CTGTATGCAATCTATAGGAA+TGG | 0.607405 | 7.4:-93990073 | MS.gene54346:CDS |
| CTATGCACCAAGAGATGCAA+GGG | 0.607841 | 7.4:-93990887 | MS.gene54346:intron |
| TGCATAGTACAACCAAAGCA+TGG | 0.611574 | 7.4:+93990996 | None:intergenic |
| TATGCAATCTATAGGAATGG+TGG | 0.615800 | 7.4:-93990070 | MS.gene54346:CDS |
| AGCCAAAGTGTTGTGACTGA+TGG | 0.616515 | 7.4:+93991704 | None:intergenic |
| CAGCAATGCATATGTCCTTG+AGG | 0.616655 | 7.4:+93990386 | None:intergenic |
| AGAGTGAATGACAAATTGAA+AGG | 0.622293 | 7.4:+93990448 | None:intergenic |
| TACTTTCGGCAATGAACGTG+GGG | 0.627256 | 7.4:-93990734 | MS.gene54346:CDS |
| GTACGTACCAAGCATGCCAA+AGG | 0.629235 | 7.4:+93991677 | None:intergenic |
| TTACTTTCGGCAATGAACGT+GGG | 0.632501 | 7.4:-93990735 | MS.gene54346:CDS |
| TGCAAAGACACTAACACTAA+GGG | 0.634955 | 7.4:+93990629 | None:intergenic |
| TGCAATCTATAGGAATGGTG+GGG | 0.637303 | 7.4:-93990068 | MS.gene54346:CDS |
| TGCAGCACCACTAAGCATTG+TGG | 0.637500 | 7.4:-93990610 | MS.gene54346:intron |
| TGAACAAGAAAAGAAGAACA+AGG | 0.638374 | 7.4:-93989966 | MS.gene54346:CDS |
| GAACAAGAAAAGAAGAACAA+GGG | 0.658330 | 7.4:-93989965 | MS.gene54346:CDS |
| TCTATGCACCAAGAGATGCA+AGG | 0.675820 | 7.4:-93990888 | MS.gene54346:CDS |
| TCACATTGAGTGCCACAATG+TGG | 0.691357 | 7.4:-93990426 | MS.gene54346:CDS |
| ATACAAGAAGAAATCGACAG+AGG | 0.715649 | 7.4:-93991058 | MS.gene54346:CDS |
| ACCGTAGCCAAACCACATTG+TGG | 0.726020 | 7.4:+93990414 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAAAAATAAAATTAG+TGG | - | chr7.4:93991276-93991295 | MS.gene54346:intron | 10.0% |
| !! | ATTTAAATAAATACTTACAT+TGG | + | chr7.4:93990452-93990471 | None:intergenic | 10.0% |
| !! | CATTCAATAATAAATATTTA+AGG | + | chr7.4:93990845-93990864 | None:intergenic | 10.0% |
| !! | TTATATATATTAATTGAGTA+AGG | + | chr7.4:93991052-93991071 | None:intergenic | 10.0% |
| !! | AGATATTAATGTTCAATTAT+TGG | + | chr7.4:93990793-93990812 | None:intergenic | 15.0% |
| !! | GATTTCATCAAAAAATAATT+AGG | + | chr7.4:93991401-93991420 | None:intergenic | 15.0% |
| !! | TAGTAAGAAAAAAACAAAAA+GGG | + | chr7.4:93990230-93990249 | None:intergenic | 15.0% |
| !! | TTAGTAAGAAAAAAACAAAA+AGG | + | chr7.4:93990231-93990250 | None:intergenic | 15.0% |
| !!! | TTTTCTTGAAATTTATATGT+AGG | - | chr7.4:93991112-93991131 | MS.gene54346:intron | 15.0% |
| !! | AAAACAATCAAATTATGACA+AGG | + | chr7.4:93991325-93991344 | None:intergenic | 20.0% |
| !! | ATATAATGTGTGTGTATAAA+CGG | + | chr7.4:93990307-93990326 | None:intergenic | 20.0% |
| !! | TTAATGTTCAATTATTGGAT+TGG | + | chr7.4:93990788-93990807 | None:intergenic | 20.0% |
| !! | TTGAAAATATATGGAAAATG+TGG | + | chr7.4:93990132-93990151 | None:intergenic | 20.0% |
| !!! | AGTTTGATTTATGAACTTAA+TGG | - | chr7.4:93991080-93991099 | MS.gene54346:intron | 20.0% |
| !!! | CATATATTTTCAATGCATTT+AGG | - | chr7.4:93990076-93990095 | MS.gene54346:CDS | 20.0% |
| !!! | GTATTTTACTTTTTTGTTCT+AGG | - | chr7.4:93989996-93990015 | MS.gene54346:CDS | 20.0% |
| ! | AAAAAAACAAAAAGGGAATG+TGG | + | chr7.4:93990223-93990242 | None:intergenic | 25.0% |
| ! | ACAAAATACATGTATACAAG+AGG | + | chr7.4:93990354-93990373 | None:intergenic | 25.0% |
| ! | TCGATTTCTTCTTGTATATA+CGG | + | chr7.4:93990557-93990576 | None:intergenic | 25.0% |
| ! | TTACCTGTACATCAAATATA+GGG | + | chr7.4:93990401-93990420 | None:intergenic | 25.0% |
| !! | TCTATAACAATACTTTTGAG+TGG | + | chr7.4:93991614-93991633 | None:intergenic | 25.0% |
| !!! | CTTAACTTTCAAGTTACTTT+CGG | - | chr7.4:93990870-93990889 | MS.gene54346:intron | 25.0% |
| !!! | TTGTTCAATTTTTTCCGATT+GGG | + | chr7.4:93991639-93991658 | None:intergenic | 25.0% |
| AGAGTGAATGACAAATTGAA+AGG | + | chr7.4:93991173-93991192 | None:intergenic | 30.0% | |
| CTCATTACCATAAACTCATT+TGG | - | chr7.4:93990669-93990688 | MS.gene54346:CDS | 30.0% | |
| GAACAAGAAAAGAAGAACAA+GGG | - | chr7.4:93991653-93991672 | MS.gene54346:intron | 30.0% | |
| GATGTACAATATGATGTAGA+TGG | + | chr7.4:93990709-93990728 | None:intergenic | 30.0% | |
| GCAAATAGATATACAAGTAC+TGG | - | chr7.4:93990018-93990037 | MS.gene54346:CDS | 30.0% | |
| GTTACCTGTACATCAAATAT+AGG | + | chr7.4:93990402-93990421 | None:intergenic | 30.0% | |
| TATTGTTATAGAGACCCAAT+CGG | - | chr7.4:93991622-93991641 | MS.gene54346:intron | 30.0% | |
| TGAACAAGAAAAGAAGAACA+AGG | - | chr7.4:93991652-93991671 | MS.gene54346:intron | 30.0% | |
| TGGGGAAAAAACTATGAAAA+AGG | - | chr7.4:93991568-93991587 | MS.gene54346:intron | 30.0% | |
| TGTGTGTATAAACGGTTAAT+TGG | + | chr7.4:93990299-93990318 | None:intergenic | 30.0% | |
| ! | CAAATGAGTTTATGGTAATG+AGG | + | chr7.4:93990671-93990690 | None:intergenic | 30.0% |
| !!! | CTTGTTCAATTTTTTCCGAT+TGG | + | chr7.4:93991640-93991659 | None:intergenic | 30.0% |
| AAATGTGTTGGGTTTCGTAT+TGG | - | chr7.4:93991505-93991524 | MS.gene54346:intron | 35.0% | |
| AATAATACCCTTGCATCTCT+TGG | + | chr7.4:93990741-93990760 | None:intergenic | 35.0% | |
| AATACGAAACCCAACACATT+TGG | + | chr7.4:93991506-93991525 | None:intergenic | 35.0% | |
| AATGTGTTGGGTTTCGTATT+GGG | - | chr7.4:93991506-93991525 | MS.gene54346:intron | 35.0% | |
| AGTAAGCTGCTAAAATGAAG+TGG | + | chr7.4:93990108-93990127 | None:intergenic | 35.0% | |
| ATACAAGAAGAAATCGACAG+AGG | - | chr7.4:93990560-93990579 | MS.gene54346:intron | 35.0% | |
| ATACGAAACCCAACACATTT+GGG | + | chr7.4:93991505-93991524 | None:intergenic | 35.0% | |
| ATGCAATCTATAGGAATGGT+GGG | - | chr7.4:93991549-93991568 | MS.gene54346:intron | 35.0% | |
| CACACATCCAAATGAGTTTA+TGG | + | chr7.4:93990679-93990698 | None:intergenic | 35.0% | |
| CATAAACTCATTTGGATGTG+TGG | - | chr7.4:93990677-93990696 | MS.gene54346:CDS | 35.0% | |
| CTGTATGCAATCTATAGGAA+TGG | - | chr7.4:93991545-93991564 | MS.gene54346:intron | 35.0% | |
| GCAAAAAGTTGAATACCAAG+AGG | - | chr7.4:93990176-93990195 | MS.gene54346:intron | 35.0% | |
| GTAAGCTGCTAAAATGAAGT+GGG | + | chr7.4:93990107-93990126 | None:intergenic | 35.0% | |
| TACAAGAAGAAATCGACAGA+GGG | - | chr7.4:93990561-93990580 | MS.gene54346:intron | 35.0% | |
| TATGCAATCTATAGGAATGG+TGG | - | chr7.4:93991548-93991567 | MS.gene54346:intron | 35.0% | |
| TGAGGAAAAAGTTCAAAGTG+AGG | - | chr7.4:93991685-93991704 | MS.gene54346:CDS | 35.0% | |
| TGCAAAGACACTAACACTAA+GGG | + | chr7.4:93990992-93991011 | None:intergenic | 35.0% | |
| TTATCAACTCAACATCCTCT+TGG | + | chr7.4:93990194-93990213 | None:intergenic | 35.0% | |
| ! | ATGTATTTTGTGAGCAGCAA+AGG | - | chr7.4:93990363-93990382 | MS.gene54346:intron | 35.0% |
| !! | ATACTTTTGAGTGGCTCAAT+TGG | + | chr7.4:93991605-93991624 | None:intergenic | 35.0% |
| !!! | AACACTTTGGCTTTTACCTT+TGG | - | chr7.4:93989925-93989944 | MS.gene54346:CDS | 35.0% |
| AGGTAACGTCATTTCGTTCT+TGG | - | chr7.4:93990415-93990434 | MS.gene54346:CDS | 40.0% | |
| CTGAACAAAGCTACTAGGTA+AGG | + | chr7.4:93990600-93990619 | None:intergenic | 40.0% | |
| CTGCAAAGACACTAACACTA+AGG | + | chr7.4:93990993-93991012 | None:intergenic | 40.0% | |
| CTGCCCTATATTTGATGTAC+AGG | - | chr7.4:93990395-93990414 | MS.gene54346:CDS | 40.0% | |
| GACTATGAGGATCAAAGCAA+AGG | + | chr7.4:93990911-93990930 | None:intergenic | 40.0% | |
| GTACATACCACAATGCTTAG+TGG | + | chr7.4:93991018-93991037 | None:intergenic | 40.0% | |
| GTTCAAAGTGAGGAACCTAT+TGG | - | chr7.4:93991695-93991714 | MS.gene54346:CDS | 40.0% | |
| TGCAATCTATAGGAATGGTG+GGG | - | chr7.4:93991550-93991569 | MS.gene54346:intron | 40.0% | |
| TGCATAGTACAACCAAAGCA+TGG | + | chr7.4:93990625-93990644 | None:intergenic | 40.0% | |
| TGCTGCTGTATGCAATCTAT+AGG | - | chr7.4:93991540-93991559 | MS.gene54346:intron | 40.0% | |
| TTACTTTCGGCAATGAACGT+GGG | - | chr7.4:93990883-93990902 | MS.gene54346:intron | 40.0% | |
| ! | GAACAAGGGTGATGATAATG+AGG | - | chr7.4:93991667-93991686 | MS.gene54346:intron | 40.0% |
| !! | CATTTCGTTCTTGGTGTTCT+TGG | - | chr7.4:93990424-93990443 | MS.gene54346:CDS | 40.0% |
| CACAAACCCATCCAAGAACT+TGG | + | chr7.4:93990966-93990985 | None:intergenic | 45.0% | |
| CAGCAATGCATATGTCCTTG+AGG | + | chr7.4:93991235-93991254 | None:intergenic | 45.0% | |
| CGGCATAGTTAGTGACTATG+AGG | + | chr7.4:93990924-93990943 | None:intergenic | 45.0% | |
| CTATGCACCAAGAGATGCAA+GGG | - | chr7.4:93990731-93990750 | MS.gene54346:CDS | 45.0% | |
| CTTTGTTCAGCTCCATGCTT+TGG | - | chr7.4:93990610-93990629 | MS.gene54346:intron | 45.0% | |
| TACTTTCGGCAATGAACGTG+GGG | - | chr7.4:93990884-93990903 | MS.gene54346:intron | 45.0% | |
| TCACATTGAGTGCCACAATG+TGG | - | chr7.4:93991192-93991211 | MS.gene54346:CDS | 45.0% | |
| TCGTGTCCAAGTTCTTGGAT+GGG | - | chr7.4:93990957-93990976 | MS.gene54346:CDS | 45.0% | |
| TCTATGCACCAAGAGATGCA+AGG | - | chr7.4:93990730-93990749 | MS.gene54346:CDS | 45.0% | |
| TGGAGCTGAACAAAGCTACT+AGG | + | chr7.4:93990605-93990624 | None:intergenic | 45.0% | |
| TTCGTGTCCAAGTTCTTGGA+TGG | - | chr7.4:93990956-93990975 | MS.gene54346:CDS | 45.0% | |
| TTGAGTGCCACAATGTGGTT+TGG | - | chr7.4:93991197-93991216 | MS.gene54346:CDS | 45.0% | |
| ! | GCTTTTACCTTTGGCATGCT+TGG | - | chr7.4:93989934-93989953 | MS.gene54346:CDS | 45.0% |
| ! | GTTACTTTCGGCAATGAACG+TGG | - | chr7.4:93990882-93990901 | MS.gene54346:intron | 45.0% |
| !! | AGCCAAAGTGTTGTGACTGA+TGG | + | chr7.4:93989917-93989936 | None:intergenic | 45.0% |
| !! | ATAATTAAATTGAAAATATA+TGG | + | chr7.4:93990141-93990160 | None:intergenic | 5.0% |
| ACCGTAGCCAAACCACATTG+TGG | + | chr7.4:93991207-93991226 | None:intergenic | 50.0% | |
| CCAAGAACTTGGACACGAAG+TGG | + | chr7.4:93990955-93990974 | None:intergenic | 50.0% | |
| CCACTTCGTGTCCAAGTTCT+TGG | - | chr7.4:93990952-93990971 | MS.gene54346:CDS | 50.0% | |
| GGCCATCAGTCACAACACTT+TGG | - | chr7.4:93989912-93989931 | MS.gene54346:CDS | 50.0% | |
| GTACGTACCAAGCATGCCAA+AGG | + | chr7.4:93989944-93989963 | None:intergenic | 50.0% | |
| GTCACTAACTATGCCGTGCA+TGG | - | chr7.4:93990928-93990947 | MS.gene54346:CDS | 50.0% | |
| GTGCAGCTCCCAAATGTGTT+GGG | - | chr7.4:93991494-93991513 | MS.gene54346:intron | 50.0% | |
| TGTGCAGCTCCCAAATGTGT+TGG | - | chr7.4:93991493-93991512 | MS.gene54346:intron | 50.0% | |
| ! | GCCACAATGTGGTTTGGCTA+CGG | - | chr7.4:93991203-93991222 | MS.gene54346:CDS | 50.0% |
| ! | TGCAGCACCACTAAGCATTG+TGG | - | chr7.4:93991008-93991027 | MS.gene54346:CDS | 50.0% |
| !! | AGTGAGGAACCTATTGGCTC+TGG | - | chr7.4:93991701-93991720 | MS.gene54346:CDS | 50.0% |
| GACACGAAGTGGACCATGCA+CGG | + | chr7.4:93990944-93990963 | None:intergenic | 55.0% | |
| TGGCTACGGTCTCTTCCTCA+AGG | - | chr7.4:93991217-93991236 | MS.gene54346:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 93989910 | 93991730 | 93989910 | ID=MS.gene54346 |
| chr7.4 | mRNA | 93989910 | 93991730 | 93989910 | ID=MS.gene54346.t1;Parent=MS.gene54346 |
| chr7.4 | exon | 93991685 | 93991730 | 93991685 | ID=MS.gene54346.t1.exon1;Parent=MS.gene54346.t1 |
| chr7.4 | CDS | 93991685 | 93991730 | 93991685 | ID=cds.MS.gene54346.t1;Parent=MS.gene54346.t1 |
| chr7.4 | exon | 93991187 | 93991223 | 93991187 | ID=MS.gene54346.t1.exon2;Parent=MS.gene54346.t1 |
| chr7.4 | CDS | 93991187 | 93991223 | 93991187 | ID=cds.MS.gene54346.t1;Parent=MS.gene54346.t1 |
| chr7.4 | exon | 93990888 | 93991098 | 93990888 | ID=MS.gene54346.t1.exon3;Parent=MS.gene54346.t1 |
| chr7.4 | CDS | 93990888 | 93991098 | 93990888 | ID=cds.MS.gene54346.t1;Parent=MS.gene54346.t1 |
| chr7.4 | exon | 93990611 | 93990772 | 93990611 | ID=MS.gene54346.t1.exon4;Parent=MS.gene54346.t1 |
| chr7.4 | CDS | 93990611 | 93990772 | 93990611 | ID=cds.MS.gene54346.t1;Parent=MS.gene54346.t1 |
| chr7.4 | exon | 93990387 | 93990506 | 93990387 | ID=MS.gene54346.t1.exon5;Parent=MS.gene54346.t1 |
| chr7.4 | CDS | 93990387 | 93990506 | 93990387 | ID=cds.MS.gene54346.t1;Parent=MS.gene54346.t1 |
| chr7.4 | exon | 93989910 | 93990140 | 93989910 | ID=MS.gene54346.t1.exon6;Parent=MS.gene54346.t1 |
| chr7.4 | CDS | 93989910 | 93990140 | 93989910 | ID=cds.MS.gene54346.t1;Parent=MS.gene54346.t1 |
| Gene Sequence |
| Protein sequence |
