AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54557


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54557.t1 MTR_8g085350 95.556 315 14 0 1 315 1 315 0.0 587
MS.gene54557.t1 MTR_8g085350 95.021 241 12 0 75 315 1 241 3.61e-167 466
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54557.t1 AT2G32760 56.291 302 128 1 14 315 16 313 1.72e-113 332
MS.gene54557.t1 AT2G32760 55.602 241 103 1 75 315 1 237 8.02e-88 264
MS.gene54557.t1 AT2G32760 55.602 241 103 1 75 315 1 237 8.02e-88 264

Find 56 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGGGATCTTTGACGATTC+AGG 0.228077 4.1:+14228758 MS.gene54557:CDS
GAGCTTGAAGCATATCCTTT+AGG 0.322768 4.1:+14228464 MS.gene54557:CDS
GTCAAAGATCCCTGATTAAC+TGG 0.323069 4.1:-14228750 None:intergenic
CGAACATAAACCAGTTAATC+AGG 0.328631 4.1:+14228740 MS.gene54557:CDS
CTGATTAACTGGTTTATGTT+CGG 0.346972 4.1:-14228739 None:intergenic
AGAATATGTCTATACGTTCT+AGG 0.347316 4.1:+14226292 MS.gene54557:CDS
TGGTGCTTTGCAGTCACTTT+TGG 0.354409 4.1:+14226356 MS.gene54557:CDS
AGATTACTGTCTGAAGAAAA+TGG 0.354501 4.1:+14228326 MS.gene54557:CDS
GAAAATTGCAAAAGATTCTA+AGG 0.354960 4.1:+14228363 MS.gene54557:CDS
AAGGTTTCGTTTCTTCTCCT+TGG 0.365059 4.1:-14226020 None:intergenic
TTTGTCTGTGAGCAGTTTAA+TGG 0.374286 4.1:+14226198 MS.gene54557:intron
TGATTAACTGGTTTATGTTC+GGG 0.378393 4.1:-14228738 None:intergenic
CAGAAATCTGCTACAGCCTT+AGG 0.383257 4.1:+14228843 MS.gene54557:CDS
GCAGTTTAATGGTGAATCAT+TGG 0.389497 4.1:+14226209 MS.gene54557:intron
TGTAACTAGCAGAAACCTTC+AGG 0.394811 4.1:+14226398 MS.gene54557:CDS
TCAAGCTCTTGCTCTTGTGC+TGG 0.402870 4.1:-14228449 None:intergenic
TTCGTTTCTTCTCCTTGGCT+TGG 0.413812 4.1:-14226015 None:intergenic
TCAATCAGTCGAACATCATC+TGG 0.420031 4.1:-14225935 None:intergenic
AAGCTGCTCTTGTTGTGTCT+TGG 0.428578 4.1:-14229358 None:intergenic
CAGGGATCTTTGACGATTCA+GGG 0.428687 4.1:+14228759 MS.gene54557:CDS
CAGTTTAATGGTGAATCATT+GGG 0.476087 4.1:+14226210 MS.gene54557:intron
TAAGGAGGATGCTGGTAAGC+AGG 0.488908 4.1:+14226320 MS.gene54557:CDS
TACCTTGCTTAGTAAGAATA+CGG 0.490664 4.1:-14229384 None:intergenic
GAGACTCGAGTTTGTGCTGA+AGG 0.493087 4.1:-14226039 None:intergenic
CTACGCTATCCCGTACGGTT+GGG 0.495309 4.1:+14229212 MS.gene54557:CDS
ATGATGTTCGACTGATTGAC+TGG 0.498273 4.1:+14225939 MS.gene54557:CDS
TGCCGTATTCTTACTAAGCA+AGG 0.505027 4.1:+14229382 MS.gene54557:CDS
TAGAGGAACTTGCAAGTATG+AGG 0.508832 4.1:-14229192 None:intergenic
GGAATCAAAGAAATTGATCA+TGG 0.514210 4.1:+14226269 MS.gene54557:CDS
TTCCTCTACGCTATCCCGTA+CGG 0.519170 4.1:+14229207 MS.gene54557:CDS
AAGCAGGAGGAGCAACTTAG+TGG 0.523359 4.1:+14226336 MS.gene54557:CDS
TGCAAAAGATTCTAAGGATG+AGG 0.525190 4.1:+14228369 MS.gene54557:CDS
TCTACGCTATCCCGTACGGT+TGG 0.525579 4.1:+14229211 MS.gene54557:CDS
AAGGATGAGGCAACAATACA+TGG 0.532227 4.1:+14228382 MS.gene54557:CDS
ATATGCTTGGCATTTGTGAA+AGG 0.535167 4.1:-14229311 None:intergenic
TATCCTTTAGGTAGTTCAGC+AGG 0.536534 4.1:+14228476 MS.gene54557:CDS
CAAACTCGAGTCTCTCATCC+AGG 0.545300 4.1:+14226048 MS.gene54557:CDS
TATACGTTCTAGGCTGGCTA+AGG 0.546829 4.1:+14226302 MS.gene54557:CDS
GTCAATAATATATGAATGAG+AGG 0.554475 4.1:-14229237 None:intergenic
ACGTTCTAGGCTGGCTAAGG+AGG 0.558899 4.1:+14226305 MS.gene54557:CDS
TATGTCTATACGTTCTAGGC+TGG 0.561598 4.1:+14226296 MS.gene54557:CDS
ATGAGAGGCACCCAACCGTA+CGG 0.571866 4.1:-14229222 None:intergenic
TGAGAGGCACCCAACCGTAC+GGG 0.574841 4.1:-14229221 None:intergenic
TTACCTGCTGAACTACCTAA+AGG 0.575586 4.1:-14228479 None:intergenic
TACATGTGCAACATATCCTA+AGG 0.579587 4.1:-14228859 None:intergenic
TCGAACATCATCTGGATCAG+TGG 0.601549 4.1:-14225927 None:intergenic
TTCTGCTCTTAACCAAGCCA+AGG 0.604417 4.1:+14226003 MS.gene54557:CDS
GATAGAGCTAACTTCTTCTG+AGG 0.606180 4.1:+14229271 MS.gene54557:CDS
GAACATAAACCAGTTAATCA+GGG 0.606763 4.1:+14228741 MS.gene54557:CDS
AGAAGAAGTTAGCTCTATCG+AGG 0.617283 4.1:-14229267 None:intergenic
TTAACTGGTTTATGTTCGGG+AGG 0.640495 4.1:-14228735 None:intergenic
GGAGGATGCTGGTAAGCAGG+AGG 0.648190 4.1:+14226323 MS.gene54557:CDS
AGGCTGGCTAAGGAGGATGC+TGG 0.655911 4.1:+14226312 MS.gene54557:CDS
AACCGTACGGGATAGCGTAG+AGG 0.681236 4.1:-14229209 None:intergenic
GAAGAAGTTAGCTCTATCGA+GGG 0.683985 4.1:-14229266 None:intergenic
TGATGTTCGACTGATTGACT+GGG 0.717969 4.1:+14225940 MS.gene54557:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTAAATTTTTAAAAAT+CGG + chr4.1:14226614-14226633 MS.gene54557:intron 0.0%
!! TAACTAAAATAAACTATTTA+GGG + chr4.1:14226110-14226129 MS.gene54557:intron 10.0%
!! TTAACTAAAATAAACTATTT+AGG + chr4.1:14226109-14226128 MS.gene54557:intron 10.0%
!! AAAAAAAAAAAAAACTCTCA+AGG + chr4.1:14228034-14228053 MS.gene54557:intron 15.0%
!! AAAAAAAAAAAAACTCTCAA+GGG + chr4.1:14228035-14228054 MS.gene54557:intron 15.0%
!! TGTAAAAAATATGAACTTAT+TGG - chr4.1:14227947-14227966 None:intergenic 15.0%
!!! ATTAAATTTTTAAAAATCGG+CGG + chr4.1:14226617-14226636 MS.gene54557:intron 15.0%
!! AATAAAACCAGTGAATATTA+TGG - chr4.1:14228065-14228084 None:intergenic 20.0%
!! ACTATAAACATAGATAATCT+TGG - chr4.1:14226783-14226802 None:intergenic 20.0%
!! ACTATACAAATGAAATAGAA+AGG - chr4.1:14226966-14226985 None:intergenic 20.0%
!! AGCATATTTCAACAATTATT+AGG - chr4.1:14229129-14229148 None:intergenic 20.0%
!! CATATAAAAGAAGAAATTTG+AGG + chr4.1:14228568-14228587 MS.gene54557:intron 20.0%
!! TAGTTATAGTATGAGATTTA+AGG - chr4.1:14227983-14228002 None:intergenic 20.0%
!! TTATATACAGAAAACTTGAT+TGG + chr4.1:14229021-14229040 MS.gene54557:intron 20.0%
!! TTCTATTTCATTTGTATAGT+TGG + chr4.1:14226966-14226985 MS.gene54557:intron 20.0%
!! TTGTTAGTTAAATCCATATT+AGG + chr4.1:14227360-14227379 MS.gene54557:intron 20.0%
!!! AGAATTAGGTTTTTCATATA+GGG + chr4.1:14226086-14226105 MS.gene54557:intron 20.0%
!!! ATAATATTCACTGGTTTTAT+TGG + chr4.1:14228064-14228083 MS.gene54557:intron 20.0%
!!! ATGTTTTTATTTAGACTGAA+TGG + chr4.1:14227402-14227421 MS.gene54557:intron 20.0%
!!! GTTTTCTTGTGATAATATTA+TGG - chr4.1:14227854-14227873 None:intergenic 20.0%
!!! TAATATTCACTGGTTTTATT+GGG + chr4.1:14228065-14228084 MS.gene54557:intron 20.0%
!!! TGGAAAATTACTTTCTTTTT+AGG + chr4.1:14227291-14227310 MS.gene54557:intron 20.0%
!!! TTAAATTTTTAAAAATCGGC+GGG + chr4.1:14226618-14226637 MS.gene54557:intron 20.0%
!!! TTTTTTTTTTTCTTTCATCC+CGG + chr4.1:14226558-14226577 MS.gene54557:intron 20.0%
! AACACACATACTATAAAGTA+TGG - chr4.1:14227604-14227623 None:intergenic 25.0%
! AATAGGCATTTAAACTGTTT+AGG + chr4.1:14227010-14227029 MS.gene54557:intron 25.0%
! AATATCTGAAAAGAGAACAA+AGG - chr4.1:14229051-14229070 None:intergenic 25.0%
! ACTCAAAATGTCAACTAAAA+TGG - chr4.1:14226704-14226723 None:intergenic 25.0%
! AGATTTGGAAATTAATGAGT+TGG + chr4.1:14227178-14227197 MS.gene54557:intron 25.0%
! AGCAATAAATTTCTCAAAGA+AGG - chr4.1:14227528-14227547 None:intergenic 25.0%
! AGCGTATAAGGAATTATAAA+CGG + chr4.1:14226738-14226757 MS.gene54557:intron 25.0%
! AGCTTTCAAACTACAATAAT+AGG - chr4.1:14228278-14228297 None:intergenic 25.0%
! ATGATGATATTTATTCTGTG+TGG + chr4.1:14228513-14228532 MS.gene54557:intron 25.0%
! GAAAATTGCAAAAGATTCTA+AGG + chr4.1:14228363-14228382 MS.gene54557:CDS 25.0%
! GATGTAACTATTATGTTCTT+TGG + chr4.1:14227904-14227923 MS.gene54557:intron 25.0%
! GATTTGGAAATTAATGAGTT+GGG + chr4.1:14227179-14227198 MS.gene54557:intron 25.0%
! GTCAATAATATATGAATGAG+AGG - chr4.1:14229240-14229259 None:intergenic 25.0%
! TAGTTAAATCCATATTAGGT+GGG + chr4.1:14227364-14227383 MS.gene54557:intron 25.0%
! TGCAAATACAAAAAGTTGTA+CGG - chr4.1:14228136-14228155 None:intergenic 25.0%
! TGGAAAAAAGTTATTGGAAA+AGG - chr4.1:14227450-14227469 None:intergenic 25.0%
! TGGTTGACATTATGAATAAT+AGG + chr4.1:14226993-14227012 MS.gene54557:intron 25.0%
! TGTTGCATATATTAATAGCT+TGG + chr4.1:14227882-14227901 MS.gene54557:intron 25.0%
! TTAGTTAAATCCATATTAGG+TGG + chr4.1:14227363-14227382 MS.gene54557:intron 25.0%
! TTATACCATACACCATATTT+CGG - chr4.1:14227205-14227224 None:intergenic 25.0%
!! AAATCGTATCACATGATTTT+TGG - chr4.1:14228970-14228989 None:intergenic 25.0%
!! AAATTTTGTATTCTCAACTG+TGG + chr4.1:14229071-14229090 MS.gene54557:intron 25.0%
!! AACTCATGTGTTTTCATAAT+TGG - chr4.1:14226512-14226531 None:intergenic 25.0%
!! ACCTATAAATTTTGTAGCAA+GGG + chr4.1:14227093-14227112 MS.gene54557:intron 25.0%
!! ATATGAACTTATTGGTTACA+AGG - chr4.1:14227939-14227958 None:intergenic 25.0%
!! CAGAATTAGGTTTTTCATAT+AGG + chr4.1:14226085-14226104 MS.gene54557:intron 25.0%
!! CTGGGTAATTTTTAAACATA+AGG - chr4.1:14227050-14227069 None:intergenic 25.0%
!! GGTTTTCTATTCCTTAAATT+GGG + chr4.1:14228619-14228638 MS.gene54557:intron 25.0%
!! TAGTTTGCAATTTCCTAAAT+CGG + chr4.1:14226799-14226818 MS.gene54557:intron 25.0%
!! TGGTTTTCTATTCCTTAAAT+TGG + chr4.1:14228618-14228637 MS.gene54557:intron 25.0%
!!! AACTATTTAGGGTTTTTAGT+TGG + chr4.1:14226121-14226140 MS.gene54557:intron 25.0%
!!! GAGTTTTTTCACAGATAAAA+AGG + chr4.1:14228815-14228834 MS.gene54557:CDS 25.0%
!!! TCGTGTGATGTTTTATTTTT+GGG + chr4.1:14226589-14226608 MS.gene54557:intron 25.0%
!!! TTTTAGTTGACATTTTGAGT+AGG + chr4.1:14226704-14226723 MS.gene54557:intron 25.0%
!!! TTTTTTTTTTCTTTCATCCC+GGG + chr4.1:14226559-14226578 MS.gene54557:intron 25.0%
AAATCACCTAGAAAAACTAC+CGG + chr4.1:14227140-14227159 MS.gene54557:intron 30.0%
AATTTGTAGACATCCGATTT+AGG - chr4.1:14226815-14226834 None:intergenic 30.0%
ACTGTTTAGGTGTTTCTTAA+AGG + chr4.1:14227023-14227042 MS.gene54557:intron 30.0%
AGAATATGTCTATACGTTCT+AGG + chr4.1:14226292-14226311 MS.gene54557:CDS 30.0%
AGAGACTATTAGGAAAGATT+TGG + chr4.1:14227163-14227182 MS.gene54557:intron 30.0%
AGATTACTGTCTGAAGAAAA+TGG + chr4.1:14228326-14228345 MS.gene54557:CDS 30.0%
ATAACTACTCTCAATTCTCA+GGG + chr4.1:14227996-14228015 MS.gene54557:intron 30.0%
CAAATAACACAGATGTGAAA+TGG - chr4.1:14227653-14227672 None:intergenic 30.0%
CACATACTATAAAGTATGGA+TGG - chr4.1:14227600-14227619 None:intergenic 30.0%
CAGTTTAATGGTGAATCATT+GGG + chr4.1:14226210-14226229 MS.gene54557:intron 30.0%
CCATCAATATAGAAAAGTCT+GGG - chr4.1:14227068-14227087 None:intergenic 30.0%
CTAAGAAAGGAAAGACAAAA+TGG - chr4.1:14226649-14226668 None:intergenic 30.0%
GAACATAAACCAGTTAATCA+GGG + chr4.1:14228741-14228760 MS.gene54557:CDS 30.0%
GAGACATGGAAAAAAGTTAT+TGG - chr4.1:14227456-14227475 None:intergenic 30.0%
GATATATAGACAAGCGTATA+AGG + chr4.1:14226726-14226745 MS.gene54557:intron 30.0%
GCATAAAGATATAAGATCTG+AGG - chr4.1:14228913-14228932 None:intergenic 30.0%
GGAATCAAAGAAATTGATCA+TGG + chr4.1:14226269-14226288 MS.gene54557:CDS 30.0%
TAAACGGTTGTAGATGTAAA+CGG + chr4.1:14226754-14226773 MS.gene54557:intron 30.0%
TATAACTACTCTCAATTCTC+AGG + chr4.1:14227995-14228014 MS.gene54557:intron 30.0%
TGGTGTATGGTATAACATTA+TGG + chr4.1:14227210-14227229 MS.gene54557:intron 30.0%
TGTGAGTTACAAACTGTAAA+AGG + chr4.1:14228099-14228118 MS.gene54557:intron 30.0%
! ACAACTTTTTGTATTTGCAG+TGG + chr4.1:14228137-14228156 MS.gene54557:intron 30.0%
! ACATGTAACTAGGAAGTTTT+AGG + chr4.1:14227692-14227711 MS.gene54557:intron 30.0%
! ATCATACTGATAGCACTTTT+GGG + chr4.1:14228209-14228228 MS.gene54557:intron 30.0%
! ATGTGTTTTCATAATTGGTG+TGG - chr4.1:14226507-14226526 None:intergenic 30.0%
! ATTTTGAGCATGATCTTGTT+AGG + chr4.1:14225966-14225985 MS.gene54557:CDS 30.0%
! CCAGACTTTTCTATATTGAT+GGG + chr4.1:14227066-14227085 MS.gene54557:intron 30.0%
! CCTATAAATTTTGTAGCAAG+GGG + chr4.1:14227094-14227113 MS.gene54557:intron 30.0%
! CTGATTAACTGGTTTATGTT+CGG - chr4.1:14228742-14228761 None:intergenic 30.0%
! GACCTATAAATTTTGTAGCA+AGG + chr4.1:14227092-14227111 MS.gene54557:intron 30.0%
! TATAAGATCTGAGGTAAAGA+AGG - chr4.1:14228904-14228923 None:intergenic 30.0%
! TATCATACTGATAGCACTTT+TGG + chr4.1:14228208-14228227 MS.gene54557:intron 30.0%
! TCATTTGTATAGTTGGTACT+TGG + chr4.1:14226973-14226992 MS.gene54557:intron 30.0%
! TGATTAACTGGTTTATGTTC+GGG - chr4.1:14228741-14228760 None:intergenic 30.0%
!! AGGTTTTAGCAATCAGAATT+AGG + chr4.1:14226072-14226091 MS.gene54557:intron 30.0%
!! TTTCACATCTGTGTTATTTG+AGG + chr4.1:14227653-14227672 MS.gene54557:intron 30.0%
!!! CCAAATAAGATTTTGAGGTT+GGG + chr4.1:14227736-14227755 MS.gene54557:intron 30.0%
!!! GTCGTGTGATGTTTTATTTT+TGG + chr4.1:14226588-14226607 MS.gene54557:intron 30.0%
!!! TCCAAATAAGATTTTGAGGT+TGG + chr4.1:14227735-14227754 MS.gene54557:intron 30.0%
AAACGGTTGTAGATGTAAAC+GGG + chr4.1:14226755-14226774 MS.gene54557:intron 35.0%
AATAGAAAACCAAGAGAGAG+TGG - chr4.1:14228610-14228629 None:intergenic 35.0%
ATAACCATCCGAATTTGTGT+TGG - chr4.1:14226938-14226957 None:intergenic 35.0%
ATAACTCTCGTTGCTAAGAA+AGG - chr4.1:14226662-14226681 None:intergenic 35.0%
ATAAGATTTGTGTGTGTAGG+AGG - chr4.1:14227480-14227499 None:intergenic 35.0%
ATATGCTTGGCATTTGTGAA+AGG - chr4.1:14229314-14229333 None:intergenic 35.0%
ATCTTTCCTAATAGTCTCTC+CGG - chr4.1:14227162-14227181 None:intergenic 35.0%
ATGGCTTCATCCTTATGAAA+AGG - chr4.1:14227835-14227854 None:intergenic 35.0%
CCCAACCTCAAAATCTTATT+TGG - chr4.1:14227739-14227758 None:intergenic 35.0%
CCCATCAATATAGAAAAGTC+TGG - chr4.1:14227069-14227088 None:intergenic 35.0%
CCCCTTGCTACAAAATTTAT+AGG - chr4.1:14227097-14227116 None:intergenic 35.0%
CGAACATAAACCAGTTAATC+AGG + chr4.1:14228740-14228759 MS.gene54557:CDS 35.0%
CTCAGTCATGTCTTACTTTA+GGG - chr4.1:14228546-14228565 None:intergenic 35.0%
CTTCATCCTTATGAAAAGGA+AGG - chr4.1:14227831-14227850 None:intergenic 35.0%
GCAGTTTAATGGTGAATCAT+TGG + chr4.1:14226209-14226228 MS.gene54557:intron 35.0%
GGTTCAACCAAAAACTTTAC+AGG - chr4.1:14228431-14228450 None:intergenic 35.0%
TAACTACTCTCAATTCTCAG+GGG + chr4.1:14227997-14228016 MS.gene54557:intron 35.0%
TAAGATTTGTGTGTGTAGGA+GGG - chr4.1:14227479-14227498 None:intergenic 35.0%
TAATAGTGTTCATTCACTGC+TGG + chr4.1:14227556-14227575 MS.gene54557:intron 35.0%
TACATGTGCAACATATCCTA+AGG - chr4.1:14228862-14228881 None:intergenic 35.0%
TAGACTTTCTTCTTCTTCTC+AGG + chr4.1:14229154-14229173 MS.gene54557:intron 35.0%
TATACCATAAACTGACCTGA+AGG - chr4.1:14226416-14226435 None:intergenic 35.0%
TCAGTCATGTCTTACTTTAG+GGG - chr4.1:14228545-14228564 None:intergenic 35.0%
TCCATAAGATTTGTGTGTGT+AGG - chr4.1:14227483-14227502 None:intergenic 35.0%
TCCTACACACACAAATCTTA+TGG + chr4.1:14227479-14227498 MS.gene54557:intron 35.0%
TGAAGAGATGCGTCAAAAAT+TGG + chr4.1:14226248-14226267 MS.gene54557:CDS 35.0%
TTTGTCTGTGAGCAGTTTAA+TGG + chr4.1:14226198-14226217 MS.gene54557:intron 35.0%
! AGAAATTTGAGGTGCTAAGA+TGG + chr4.1:14228579-14228598 MS.gene54557:intron 35.0%
! AGTTTTTGTATGGCTCATGT+GGG + chr4.1:14229095-14229114 MS.gene54557:intron 35.0%
! CAACTGTGGTAGTTTTTGTA+TGG + chr4.1:14229085-14229104 MS.gene54557:intron 35.0%
! CCCAGACTTTTCTATATTGA+TGG + chr4.1:14227065-14227084 MS.gene54557:intron 35.0%
! GCTCTCCAAATAAGATTTTG+AGG + chr4.1:14227731-14227750 MS.gene54557:intron 35.0%
! GCTGATGATGCTGTTATTAT+AGG + chr4.1:14228295-14228314 MS.gene54557:intron 35.0%
! GCTGTATCCTGTAAAGTTTT+TGG + chr4.1:14228421-14228440 MS.gene54557:CDS 35.0%
! GTCTTGGCCTTCTAAAAATA+GGG - chr4.1:14229345-14229364 None:intergenic 35.0%
! TAGTTTTTGTATGGCTCATG+TGG + chr4.1:14229094-14229113 MS.gene54557:intron 35.0%
! TCATACTGATAGCACTTTTG+GGG + chr4.1:14228210-14228229 MS.gene54557:intron 35.0%
! TCTTGGCCTTCTAAAAATAG+GGG - chr4.1:14229344-14229363 None:intergenic 35.0%
! TGCAAAAGATTCTAAGGATG+AGG + chr4.1:14228369-14228388 MS.gene54557:CDS 35.0%
! TGTCTTGGCCTTCTAAAAAT+AGG - chr4.1:14229346-14229365 None:intergenic 35.0%
!!! GAATTCCCCCTATTTTTAGA+AGG + chr4.1:14229335-14229354 MS.gene54557:CDS 35.0%
!!! GTATCACATGATTTTTGGTG+TGG - chr4.1:14228965-14228984 None:intergenic 35.0%
!!! TGTAACTAGGAAGTTTTAGG+AGG + chr4.1:14227695-14227714 MS.gene54557:intron 35.0%
AAACTACCGGAGAGACTATT+AGG + chr4.1:14227153-14227172 MS.gene54557:intron 40.0%
AAGATTTGTGTGTGTAGGAG+GGG - chr4.1:14227478-14227497 None:intergenic 40.0%
AAGGATGAGGCAACAATACA+TGG + chr4.1:14228382-14228401 MS.gene54557:CDS 40.0%
AAGGTTTCGTTTCTTCTCCT+TGG - chr4.1:14226023-14226042 None:intergenic 40.0%
AATACGCGGGCTCATTAATT+AGG - chr4.1:14226165-14226184 None:intergenic 40.0%
AGGGTCATTGACATGTAACT+AGG + chr4.1:14227682-14227701 MS.gene54557:intron 40.0%
ATACGCGGGCTCATTAATTA+GGG - chr4.1:14226164-14226183 None:intergenic 40.0%
ATCTCATAGCCCACCTAATA+TGG - chr4.1:14227376-14227395 None:intergenic 40.0%
ATGATGTTCGACTGATTGAC+TGG + chr4.1:14225939-14225958 MS.gene54557:CDS 40.0%
CAAGTCAGCCAACACAAATT+CGG + chr4.1:14226927-14226946 MS.gene54557:intron 40.0%
CATCCTTATGAAAAGGAAGG+AGG - chr4.1:14227828-14227847 None:intergenic 40.0%
CATGCAAGAAAGAGAACAAC+AGG - chr4.1:14227321-14227340 None:intergenic 40.0%
CTTTGTGAATGTGAGGCTTT+GGG + chr4.1:14227779-14227798 MS.gene54557:intron 40.0%
GAAACCTTCAGGTCAGTTTA+TGG + chr4.1:14226409-14226428 MS.gene54557:intron 40.0%
GAACACAACAGCCCAATTTA+AGG - chr4.1:14228633-14228652 None:intergenic 40.0%
GAGCTTGAAGCATATCCTTT+AGG + chr4.1:14228464-14228483 MS.gene54557:CDS 40.0%
GATAGAGCTAACTTCTTCTG+AGG + chr4.1:14229271-14229290 MS.gene54557:CDS 40.0%
GCTCAGTCATGTCTTACTTT+AGG - chr4.1:14228547-14228566 None:intergenic 40.0%
GGGAAGTCCATAATATTCAC+TGG + chr4.1:14228055-14228074 MS.gene54557:intron 40.0%
GTCAAAGATCCCTGATTAAC+TGG - chr4.1:14228753-14228772 None:intergenic 40.0%
TAGAGGAACTTGCAAGTATG+AGG - chr4.1:14229195-14229214 None:intergenic 40.0%
TAGGGGGAATTCTATATGCT+TGG - chr4.1:14229327-14229346 None:intergenic 40.0%
TATCCTTTAGGTAGTTCAGC+AGG + chr4.1:14228476-14228495 MS.gene54557:CDS 40.0%
TCAATCAGTCGAACATCATC+TGG - chr4.1:14225938-14225957 None:intergenic 40.0%
TCTGATTGCTAAAACCTACC+TGG - chr4.1:14226069-14226088 None:intergenic 40.0%
TGATGTTCGACTGATTGACT+GGG + chr4.1:14225940-14225959 MS.gene54557:CDS 40.0%
TGTAACTAGCAGAAACCTTC+AGG + chr4.1:14226398-14226417 MS.gene54557:CDS 40.0%
TTACCTGCTGAACTACCTAA+AGG - chr4.1:14228482-14228501 None:intergenic 40.0%
TTAGGTAGTTCAGCAGGTAA+TGG + chr4.1:14228482-14228501 MS.gene54557:intron 40.0%
TTATGAAAAGGAAGGAGGAC+AGG - chr4.1:14227823-14227842 None:intergenic 40.0%
TTGTGTTTATATCCTTGCCC+AGG + chr4.1:14228708-14228727 MS.gene54557:intron 40.0%
! AAAGGCTTGGTTGTTGTTGA+TGG + chr4.1:14227271-14227290 MS.gene54557:intron 40.0%
! ATCTGAGGTAAAGAAGGCAA+GGG - chr4.1:14228898-14228917 None:intergenic 40.0%
! CTTGGCCTTCTAAAAATAGG+GGG - chr4.1:14229343-14229362 None:intergenic 40.0%
! TAATGAGTTGGGCCGAAATA+TGG + chr4.1:14227190-14227209 MS.gene54557:intron 40.0%
! TATGTCTATACGTTCTAGGC+TGG + chr4.1:14226296-14226315 MS.gene54557:CDS 40.0%
! TGTCCTCCTTCCTTTTCATA+AGG + chr4.1:14227822-14227841 MS.gene54557:intron 40.0%
! TTAACTGGTTTATGTTCGGG+AGG - chr4.1:14228738-14228757 None:intergenic 40.0%
! TTTAGGAGGTGTGCTAATGA+TGG + chr4.1:14227709-14227728 MS.gene54557:intron 40.0%
! TTTTTGTATTTGCAGTGGCG+AGG + chr4.1:14228142-14228161 MS.gene54557:intron 40.0%
!! AGAAGAAGTTAGCTCTATCG+AGG - chr4.1:14229270-14229289 None:intergenic 40.0%
!! GAAGAAGTTAGCTCTATCGA+GGG - chr4.1:14229269-14229288 None:intergenic 40.0%
!! GTGTTATTTGAGGTCAGAGA+GGG + chr4.1:14227663-14227682 MS.gene54557:intron 40.0%
!! TAGGTGGGCTATGAGATAAT+CGG + chr4.1:14227379-14227398 MS.gene54557:intron 40.0%
!! TGTGTTATTTGAGGTCAGAG+AGG + chr4.1:14227662-14227681 MS.gene54557:intron 40.0%
ACATCACACGACACTAAACC+CGG - chr4.1:14226580-14226599 None:intergenic 45.0%
CAACATGTCTGCAGTAGTCA+AGG - chr4.1:14228176-14228195 None:intergenic 45.0%
CAGAAATCTGCTACAGCCTT+AGG + chr4.1:14228843-14228862 MS.gene54557:CDS 45.0%
CAGGGATCTTTGACGATTCA+GGG + chr4.1:14228759-14228778 MS.gene54557:CDS 45.0%
CCAAAGCCTCACATTCACAA+AGG - chr4.1:14227781-14227800 None:intergenic 45.0%
CCTTTGTGAATGTGAGGCTT+TGG + chr4.1:14227778-14227797 MS.gene54557:intron 45.0%
TCAGCCAACACAAATTCGGA+TGG + chr4.1:14226931-14226950 MS.gene54557:intron 45.0%
TCAGGGATCTTTGACGATTC+AGG + chr4.1:14228758-14228777 MS.gene54557:CDS 45.0%
TCGAACATCATCTGGATCAG+TGG - chr4.1:14225930-14225949 None:intergenic 45.0%
TTAATGAGCCCGCGTATTAG+CGG + chr4.1:14226167-14226186 MS.gene54557:intron 45.0%
TTCGTTTCTTCTCCTTGGCT+TGG - chr4.1:14226018-14226037 None:intergenic 45.0%
TTCTGCTCTTAACCAAGCCA+AGG + chr4.1:14226003-14226022 MS.gene54557:CDS 45.0%
TTGGGCCGAAATATGGTGTA+TGG + chr4.1:14227197-14227216 MS.gene54557:intron 45.0%
! AAGCCTTTTCCCACTAAGTG+GGG - chr4.1:14227259-14227278 None:intergenic 45.0%
! AAGCTGCTCTTGTTGTGTCT+TGG - chr4.1:14229361-14229380 None:intergenic 45.0%
! CAAGCCTTTTCCCACTAAGT+GGG - chr4.1:14227260-14227279 None:intergenic 45.0%
! GATCTGAGGTAAAGAAGGCA+AGG - chr4.1:14228899-14228918 None:intergenic 45.0%
! GTCTCTCCGGTAGTTTTTCT+AGG - chr4.1:14227149-14227168 None:intergenic 45.0%
! TATACGTTCTAGGCTGGCTA+AGG + chr4.1:14226302-14226321 MS.gene54557:CDS 45.0%
!! TGGTGCTTTGCAGTCACTTT+TGG + chr4.1:14226356-14226375 MS.gene54557:CDS 45.0%
!!! TGCTTTGCAGTCACTTTTGG+TGG + chr4.1:14226359-14226378 MS.gene54557:CDS 45.0%
!!! TTTGCAGTCACTTTTGGTGG+CGG + chr4.1:14226362-14226381 MS.gene54557:CDS 45.0%
AAGCAGGAGGAGCAACTTAG+TGG + chr4.1:14226336-14226355 MS.gene54557:CDS 50.0%
AAGGGGAGTAGATCAGATGG+AGG + chr4.1:14227111-14227130 MS.gene54557:intron 50.0%
AATCATCGCCCGCTAATACG+CGG - chr4.1:14226179-14226198 None:intergenic 50.0%
ACTAAGTGGGGTCAGCTACA+TGG - chr4.1:14227247-14227266 None:intergenic 50.0%
AGCAAGGGGAGTAGATCAGA+TGG + chr4.1:14227108-14227127 MS.gene54557:intron 50.0%
ATGTAGCTGACCCCACTTAG+TGG + chr4.1:14227246-14227265 MS.gene54557:intron 50.0%
CAAACTCGAGTCTCTCATCC+AGG + chr4.1:14226048-14226067 MS.gene54557:CDS 50.0%
CATCACACGACACTAAACCC+GGG - chr4.1:14226579-14226598 None:intergenic 50.0%
CATGTCTGCAGTAGTCAAGG+AGG - chr4.1:14228173-14228192 None:intergenic 50.0%
CCACTTAGTGGGAAAAGGCT+TGG + chr4.1:14227258-14227277 MS.gene54557:intron 50.0%
CCTCACATTCACAAAGGCTG+AGG - chr4.1:14227775-14227794 None:intergenic 50.0%
CCTCAGCCTTTGTGAATGTG+AGG + chr4.1:14227772-14227791 MS.gene54557:intron 50.0%
CGGGCTCATTAATTAGGGAC+AGG - chr4.1:14226159-14226178 None:intergenic 50.0%
GAGACTCGAGTTTGTGCTGA+AGG - chr4.1:14226042-14226061 None:intergenic 50.0%
TAAGGAGGATGCTGGTAAGC+AGG + chr4.1:14226320-14226339 MS.gene54557:CDS 50.0%
TAATGAGCCCGCGTATTAGC+GGG + chr4.1:14226168-14226187 MS.gene54557:intron 50.0%
TCAAGCTCTTGCTCTTGTGC+TGG - chr4.1:14228452-14228471 None:intergenic 50.0%
TGACCCCACTTAGTGGGAAA+AGG + chr4.1:14227253-14227272 MS.gene54557:intron 50.0%
TGAGGTAAAGAAGGCAAGGG+AGG - chr4.1:14228895-14228914 None:intergenic 50.0%
TGTAGCTGACCCCACTTAGT+GGG + chr4.1:14227247-14227266 MS.gene54557:intron 50.0%
TTCCTCTACGCTATCCCGTA+CGG + chr4.1:14229207-14229226 MS.gene54557:CDS 50.0%
! ATGGTTCTGCCACTCTCTCT+TGG + chr4.1:14228598-14228617 MS.gene54557:intron 50.0%
! CCAAGCCTTTTCCCACTAAG+TGG - chr4.1:14227261-14227280 None:intergenic 50.0%
!!! TTGCAGTCACTTTTGGTGGC+GGG + chr4.1:14226363-14226382 MS.gene54557:CDS 50.0%
AACCGTACGGGATAGCGTAG+AGG - chr4.1:14229212-14229231 None:intergenic 55.0%
ATCATCGCCCGCTAATACGC+GGG - chr4.1:14226178-14226197 None:intergenic 55.0%
CTACGCTATCCCGTACGGTT+GGG + chr4.1:14229212-14229231 MS.gene54557:CDS 55.0%
CTCGAGTCTCTCATCCAGGT+AGG + chr4.1:14226052-14226071 MS.gene54557:intron 55.0%
GTATGGCTCATGTGGGACTG+TGG + chr4.1:14229102-14229121 MS.gene54557:intron 55.0%
TCTACGCTATCCCGTACGGT+TGG + chr4.1:14229211-14229230 MS.gene54557:CDS 55.0%
TGTGTGTAGGAGGGGAGACA+TGG - chr4.1:14227470-14227489 None:intergenic 55.0%
! ACGTTCTAGGCTGGCTAAGG+AGG + chr4.1:14226305-14226324 MS.gene54557:CDS 55.0%
!! ATGAGAGGCACCCAACCGTA+CGG - chr4.1:14229225-14229244 None:intergenic 55.0%
!! TATGTTCGGGAGGAGTGCCT+GGG - chr4.1:14228728-14228747 None:intergenic 55.0%
!! TTATGTTCGGGAGGAGTGCC+TGG - chr4.1:14228729-14228748 None:intergenic 55.0%
GGAGGATGCTGGTAAGCAGG+AGG + chr4.1:14226323-14226342 MS.gene54557:CDS 60.0%
! AGGCTGGCTAAGGAGGATGC+TGG + chr4.1:14226312-14226331 MS.gene54557:CDS 60.0%
!! TGAGAGGCACCCAACCGTAC+GGG - chr4.1:14229224-14229243 None:intergenic 60.0%
!!! CAGTCACTTTTGGTGGCGGG+TGG + chr4.1:14226366-14226385 MS.gene54557:CDS 60.0%
!! TCGGGAGGAGTGCCTGGGCA+AGG - chr4.1:14228723-14228742 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 14225890 14229403 14225890 ID=MS.gene54557
chr4.1 mRNA 14225890 14229403 14225890 ID=MS.gene54557.t1;Parent=MS.gene54557
chr4.1 exon 14225890 14226069 14225890 ID=MS.gene54557.t1.exon1;Parent=MS.gene54557.t1
chr4.1 CDS 14225890 14226069 14225890 ID=cds.MS.gene54557.t1;Parent=MS.gene54557.t1
chr4.1 exon 14226213 14226419 14226213 ID=MS.gene54557.t1.exon2;Parent=MS.gene54557.t1
chr4.1 CDS 14226213 14226419 14226213 ID=cds.MS.gene54557.t1;Parent=MS.gene54557.t1
chr4.1 exon 14228317 14228497 14228317 ID=MS.gene54557.t1.exon3;Parent=MS.gene54557.t1
chr4.1 CDS 14228317 14228497 14228317 ID=cds.MS.gene54557.t1;Parent=MS.gene54557.t1
chr4.1 exon 14228730 14228878 14228730 ID=MS.gene54557.t1.exon4;Parent=MS.gene54557.t1
chr4.1 CDS 14228730 14228878 14228730 ID=cds.MS.gene54557.t1;Parent=MS.gene54557.t1
chr4.1 exon 14229176 14229403 14229176 ID=MS.gene54557.t1.exon5;Parent=MS.gene54557.t1
chr4.1 CDS 14229176 14229403 14229176 ID=cds.MS.gene54557.t1;Parent=MS.gene54557.t1
Gene Sequence

>MS.gene54557

ATGGAACAAAATCTAAATCTCACATTGCTCACAACTTCCACTGATCCAGATGATGTTCGACTGATTGACTGGGAAGATTTTGAGCATGATCTTGTTAGGTTATCGAGTCTCTCTTCTGCTCTTAACCAAGCCAAGGAGAAGAAACGAAACCTTCAGCACAAACTCGAGTCTCTCATCCAGGTAGGTTTTAGCAATCAGAATTAGGTTTTTCATATAGGGTTAACTAAAATAAACTATTTAGGGTTTTTAGTTGGTTGTTAGTTAGACCTGTCCCTAATTAATGAGCCCGCGTATTAGCGGGCGATGATTTTGTCTGTGAGCAGTTTAATGGTGAATCATTGGGTCGATTGAATGAACTTGAAGAGATGCGTCAAAAATTGGAATCAAAGAAATTGATCATGGAGAATATGTCTATACGTTCTAGGCTGGCTAAGGAGGATGCTGGTAAGCAGGAGGAGCAACTTAGTGGTGCTTTGCAGTCACTTTTGGTGGCGGGTGGTACTCTCTCTGTAACTAGCAGAAACCTTCAGGTCAGTTTATGGTATATAATAATTATGAATTTAATTAGTACACTCAACTTATAATTATTTTACATGCGTATCTAATGATGTTTGCCACACCAATTATGAAAACACATGAGTTGTCATGTTATTTTTGCTTACAAAATGTTTTTTTTTTTCTTTCATCCCGGGTTTAGTGTCGTGTGATGTTTTATTTTTGGGAAATAATTAAATTTTTAAAAATCGGCGGGCTTTTCCATTTTGTCTTTCCTTTCTTAGCAACGAGAGTTATGAATCTTGTCTTTTTTGTACCATTTTAGTTGACATTTTGAGTAGGATATATAGACAAGCGTATAAGGAATTATAAACGGTTGTAGATGTAAACGGGTTCCAAGATTATCTATGTTTATAGTTTGCAATTTCCTAAATCGGATGTCTACAAATTTAGTTTATCTTACGACGTATAAAGCTTTTCAAATTGTATATATCATTTGACATCGTTAAAAAAGTTTTGAAGTTGAAGACACTAGCAAGCAACAAGTCAGCCAACACAAATTCGGATGGTTATACGATCCTTTCTATTTCATTTGTATAGTTGGTACTTGGTTGACATTATGAATAATAGGCATTTAAACTGTTTAGGTGTTTCTTAAAGGTCCTTATGTTTAAAAATTACCCAGACTTTTCTATATTGATGGGAAAGACCTATAAATTTTGTAGCAAGGGGAGTAGATCAGATGGAGGACAGTCAAATCACCTAGAAAAACTACCGGAGAGACTATTAGGAAAGATTTGGAAATTAATGAGTTGGGCCGAAATATGGTGTATGGTATAACATTATGGCGTAATTTGATCCATGTAGCTGACCCCACTTAGTGGGAAAAGGCTTGGTTGTTGTTGATGGAAAATTACTTTCTTTTTAGGAAGTCCTGTTGTTCTCTTTCTTGCATGTTTTGTCAGCTGTGACTTTTTGTTAGTTAAATCCATATTAGGTGGGCTATGAGATAATCGGATGTTTTTATTTAGACTGAATGGTAAAATTTGAATACTTTCAGTTCCTTTTCCAATAACTTTTTTCCATGTCTCCCCTCCTACACACACAAATCTTATGGAGTAAGCACTGCTATAATGTCTACCTTCTTTGAGAAATTTATTGCTCTGTTGCTTAATAGTGTTCATTCACTGCTGGTGTGAGAACTCAATAAGACCATCCATACTTTATAGTATGTGTGTTTTTGAGAACTTTCACGAGTTGTGCATCCATTTCACATCTGTGTTATTTGAGGTCAGAGAGGGTCATTGACATGTAACTAGGAAGTTTTAGGAGGTGTGCTAATGATGGCTCTCCAAATAAGATTTTGAGGTTGGGTAATGTACAATGACCTCAGCCTTTGTGAATGTGAGGCTTTGGGATAACTTCTTTTCTTGTTCCTGTCCTCCTTCCTTTTCATAAGGATGAAGCCATAATATTATCACAAGAAAACTAAATAGATGTTGCATATATTAATAGCTTGGATGTAACTATTATGTTCTTTGGCGTATTCTACCTTGTAACCAATAAGTTCATATTTTTTACAACATTGAGTGAAGCCTTAAATCTCATACTATAACTACTCTCAATTCTCAGGGGAATTTATGTCAAAAAAAAAAAAAAAAAACTCTCAAGGGAAGTCCATAATATTCACTGGTTTTATTGGGTCTAAGAGTTTTGTGAGTTACAAACTGTAAAAGGCAATGCTGCTTCCGTACAACTTTTTGTATTTGCAGTGGCGAGGTGATGCCTCCTTGACTACTGCAGACATGTTGCTATCTATTAATTATCATACTGATAGCACTTTTGGGGATTTTATTTTTAAAATTAAAAATAGTAGTGTCATATGTTACTCCTATTATTGTAGTTTGAAAGCTGATGATGCTGTTATTATAGGAAACAAGTAGATTACTGTCTGAAGAAAATGGCTATGTTCGTCTGAGAAAATTGCAAAAGATTCTAAGGATGAGGCAACAATACATGGCATCTCAAATTTCAATGCTGTATCCTGTAAAGTTTTTGGTTGAACCAGCACAAGAGCAAGAGCTTGAAGCATATCCTTTAGGTAGTTCAGCAGGTAATGGTTAGTTCAATGATGATATTTATTCTGTGTGGATTTTACCCCTAAAGTAAGACATGACTGAGCTCATATAAAAGAAGAAATTTGAGGTGCTAAGATGGTTCTGCCACTCTCTCTTGGTTTTCTATTCCTTAAATTGGGCTGTTGTGTTCTCTCGTTCTGCATCTCATGATTTAAATTATATCTTCTCAGAATCGTTATTAAAAATTGTGTTTATATCCTTGCCCAGGCACTCCTCCCGAACATAAACCAGTTAATCAGGGATCTTTGACGATTCAGGGTCTGCATTTAAGTATGCTATCATTTAGAAAGATGAGTTTTTTCACAGATAAAAAGGAAATTCAGAAATCTGCTACAGCCTTAGGATATGTTGCACATGTAAGTTTTAGTACCTCCCTTGCCTTCTTTACCTCAGATCTTATATCTTTATGCATTAATTTATGTCTTGTGTTTTTTATGATCCACACCAAAAATCATGTGATACGATTTCTAAATTGTCATATGCATATTGCATCACGTCTTATATACAGAAAACTTGATTGGTTGTCCTTTGTTCTCTTTTCAGATATTAAATTTTGTATTCTCAACTGTGGTAGTTTTTGTATGGCTCATGTGGGACTGTGGACCTAATAATTGTTGAAATATGCTTTTAATAGACTTTCTTCTTCTTCTCAGGCTGTTTCACTTATAGCCTCATACTTGCAAGTTCCTCTACGCTATCCCGTACGGTTGGGTGCCTCTCATTCATATATTATTGACAATGCACCCTCGATAGAGCTAACTTCTTCTGAGGCTTCAACAAGCACAAAACCTTTCACAAATGCCAAGCATATAGAATTCCCCCTATTTTTAGAAGGCCAAGACACAACAAGAGCAGCTTATGCCGTATTCTTACTAAGCAAG

Protein sequence

>MS.gene54557.t1

MEQNLNLTLLTTSTDPDDVRLIDWEDFEHDLVRLSSLSSALNQAKEKKRNLQHKLESLIQFNGESLGRLNELEEMRQKLESKKLIMENMSIRSRLAKEDAGKQEEQLSGALQSLLVAGGTLSVTSRNLQETSRLLSEENGYVRLRKLQKILRMRQQYMASQISMLYPVKFLVEPAQEQELEAYPLGSSAGTPPEHKPVNQGSLTIQGLHLSMLSFRKMSFFTDKKEIQKSATALGYVAHAVSLIASYLQVPLRYPVRLGASHSYIIDNAPSIELTSSEASTSTKPFTNAKHIEFPLFLEGQDTTRAAYAVFLLSK