Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54557.t1 | XP_003629676.1 | 95.6 | 315 | 14 | 0 | 1 | 315 | 1 | 315 | 2.10E-157 | 565.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54557.t1 | Q8K245 | 25.3 | 289 | 159 | 8 | 31 | 315 | 195 | 430 | 7.5e-07 | 56.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54557.t1 | G7LHV8 | 95.6 | 315 | 14 | 0 | 1 | 315 | 1 | 315 | 1.5e-157 | 565.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049166 | MS.gene54557 | 0.815871 | 7.40E-52 | -1.69E-46 |
MS.gene049283 | MS.gene54557 | 0.803284 | 3.75E-49 | -1.69E-46 |
MS.gene050317 | MS.gene54557 | 0.808931 | 2.43E-50 | -1.69E-46 |
MS.gene050838 | MS.gene54557 | 0.802084 | 6.64E-49 | -1.69E-46 |
MS.gene051003 | MS.gene54557 | 0.806607 | 7.58E-50 | -1.69E-46 |
MS.gene051902 | MS.gene54557 | 0.828715 | 7.71E-55 | -1.69E-46 |
MS.gene051975 | MS.gene54557 | 0.809617 | 1.73E-50 | -1.69E-46 |
MS.gene052072 | MS.gene54557 | 0.80136 | 9.34E-49 | -1.69E-46 |
MS.gene052434 | MS.gene54557 | 0.816573 | 5.16E-52 | -1.69E-46 |
MS.gene052818 | MS.gene54557 | -0.812134 | 4.94E-51 | -1.69E-46 |
MS.gene053298 | MS.gene54557 | 0.817956 | 2.52E-52 | -1.69E-46 |
MS.gene053786 | MS.gene54557 | 0.800662 | 1.30E-48 | -1.69E-46 |
MS.gene05517 | MS.gene54557 | 0.800155 | 1.65E-48 | -1.69E-46 |
MS.gene056403 | MS.gene54557 | 0.836767 | 7.72E-57 | -1.69E-46 |
MS.gene056605 | MS.gene54557 | 0.830254 | 3.26E-55 | -1.69E-46 |
MS.gene056986 | MS.gene54557 | 0.829771 | 4.27E-55 | -1.69E-46 |
MS.gene057102 | MS.gene54557 | 0.811288 | 7.55E-51 | -1.69E-46 |
MS.gene05781 | MS.gene54557 | 0.822236 | 2.64E-53 | -1.69E-46 |
MS.gene057890 | MS.gene54557 | -0.816231 | 6.15E-52 | -1.69E-46 |
MS.gene057999 | MS.gene54557 | 0.838528 | 2.73E-57 | -1.69E-46 |
MS.gene058074 | MS.gene54557 | 0.831171 | 1.94E-55 | -1.69E-46 |
MS.gene059146 | MS.gene54557 | 0.81754 | 3.13E-52 | -1.69E-46 |
MS.gene06011 | MS.gene54557 | 0.837936 | 3.87E-57 | -1.69E-46 |
MS.gene060763 | MS.gene54557 | 0.850292 | 1.87E-60 | -1.69E-46 |
MS.gene060830 | MS.gene54557 | 0.808228 | 3.43E-50 | -1.69E-46 |
MS.gene060937 | MS.gene54557 | 0.802084 | 6.64E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54557.t1 | MTR_8g085350 | 95.556 | 315 | 14 | 0 | 1 | 315 | 1 | 315 | 0.0 | 587 |
MS.gene54557.t1 | MTR_8g085350 | 95.021 | 241 | 12 | 0 | 75 | 315 | 1 | 241 | 3.61e-167 | 466 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54557.t1 | AT2G32760 | 56.291 | 302 | 128 | 1 | 14 | 315 | 16 | 313 | 1.72e-113 | 332 |
MS.gene54557.t1 | AT2G32760 | 55.602 | 241 | 103 | 1 | 75 | 315 | 1 | 237 | 8.02e-88 | 264 |
MS.gene54557.t1 | AT2G32760 | 55.602 | 241 | 103 | 1 | 75 | 315 | 1 | 237 | 8.02e-88 | 264 |
Find 56 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAGGGATCTTTGACGATTC+AGG | 0.228077 | 4.1:+14228758 | MS.gene54557:CDS |
GAGCTTGAAGCATATCCTTT+AGG | 0.322768 | 4.1:+14228464 | MS.gene54557:CDS |
GTCAAAGATCCCTGATTAAC+TGG | 0.323069 | 4.1:-14228750 | None:intergenic |
CGAACATAAACCAGTTAATC+AGG | 0.328631 | 4.1:+14228740 | MS.gene54557:CDS |
CTGATTAACTGGTTTATGTT+CGG | 0.346972 | 4.1:-14228739 | None:intergenic |
AGAATATGTCTATACGTTCT+AGG | 0.347316 | 4.1:+14226292 | MS.gene54557:CDS |
TGGTGCTTTGCAGTCACTTT+TGG | 0.354409 | 4.1:+14226356 | MS.gene54557:CDS |
AGATTACTGTCTGAAGAAAA+TGG | 0.354501 | 4.1:+14228326 | MS.gene54557:CDS |
GAAAATTGCAAAAGATTCTA+AGG | 0.354960 | 4.1:+14228363 | MS.gene54557:CDS |
AAGGTTTCGTTTCTTCTCCT+TGG | 0.365059 | 4.1:-14226020 | None:intergenic |
TTTGTCTGTGAGCAGTTTAA+TGG | 0.374286 | 4.1:+14226198 | MS.gene54557:intron |
TGATTAACTGGTTTATGTTC+GGG | 0.378393 | 4.1:-14228738 | None:intergenic |
CAGAAATCTGCTACAGCCTT+AGG | 0.383257 | 4.1:+14228843 | MS.gene54557:CDS |
GCAGTTTAATGGTGAATCAT+TGG | 0.389497 | 4.1:+14226209 | MS.gene54557:intron |
TGTAACTAGCAGAAACCTTC+AGG | 0.394811 | 4.1:+14226398 | MS.gene54557:CDS |
TCAAGCTCTTGCTCTTGTGC+TGG | 0.402870 | 4.1:-14228449 | None:intergenic |
TTCGTTTCTTCTCCTTGGCT+TGG | 0.413812 | 4.1:-14226015 | None:intergenic |
TCAATCAGTCGAACATCATC+TGG | 0.420031 | 4.1:-14225935 | None:intergenic |
AAGCTGCTCTTGTTGTGTCT+TGG | 0.428578 | 4.1:-14229358 | None:intergenic |
CAGGGATCTTTGACGATTCA+GGG | 0.428687 | 4.1:+14228759 | MS.gene54557:CDS |
CAGTTTAATGGTGAATCATT+GGG | 0.476087 | 4.1:+14226210 | MS.gene54557:intron |
TAAGGAGGATGCTGGTAAGC+AGG | 0.488908 | 4.1:+14226320 | MS.gene54557:CDS |
TACCTTGCTTAGTAAGAATA+CGG | 0.490664 | 4.1:-14229384 | None:intergenic |
GAGACTCGAGTTTGTGCTGA+AGG | 0.493087 | 4.1:-14226039 | None:intergenic |
CTACGCTATCCCGTACGGTT+GGG | 0.495309 | 4.1:+14229212 | MS.gene54557:CDS |
ATGATGTTCGACTGATTGAC+TGG | 0.498273 | 4.1:+14225939 | MS.gene54557:CDS |
TGCCGTATTCTTACTAAGCA+AGG | 0.505027 | 4.1:+14229382 | MS.gene54557:CDS |
TAGAGGAACTTGCAAGTATG+AGG | 0.508832 | 4.1:-14229192 | None:intergenic |
GGAATCAAAGAAATTGATCA+TGG | 0.514210 | 4.1:+14226269 | MS.gene54557:CDS |
TTCCTCTACGCTATCCCGTA+CGG | 0.519170 | 4.1:+14229207 | MS.gene54557:CDS |
AAGCAGGAGGAGCAACTTAG+TGG | 0.523359 | 4.1:+14226336 | MS.gene54557:CDS |
TGCAAAAGATTCTAAGGATG+AGG | 0.525190 | 4.1:+14228369 | MS.gene54557:CDS |
TCTACGCTATCCCGTACGGT+TGG | 0.525579 | 4.1:+14229211 | MS.gene54557:CDS |
AAGGATGAGGCAACAATACA+TGG | 0.532227 | 4.1:+14228382 | MS.gene54557:CDS |
ATATGCTTGGCATTTGTGAA+AGG | 0.535167 | 4.1:-14229311 | None:intergenic |
TATCCTTTAGGTAGTTCAGC+AGG | 0.536534 | 4.1:+14228476 | MS.gene54557:CDS |
CAAACTCGAGTCTCTCATCC+AGG | 0.545300 | 4.1:+14226048 | MS.gene54557:CDS |
TATACGTTCTAGGCTGGCTA+AGG | 0.546829 | 4.1:+14226302 | MS.gene54557:CDS |
GTCAATAATATATGAATGAG+AGG | 0.554475 | 4.1:-14229237 | None:intergenic |
ACGTTCTAGGCTGGCTAAGG+AGG | 0.558899 | 4.1:+14226305 | MS.gene54557:CDS |
TATGTCTATACGTTCTAGGC+TGG | 0.561598 | 4.1:+14226296 | MS.gene54557:CDS |
ATGAGAGGCACCCAACCGTA+CGG | 0.571866 | 4.1:-14229222 | None:intergenic |
TGAGAGGCACCCAACCGTAC+GGG | 0.574841 | 4.1:-14229221 | None:intergenic |
TTACCTGCTGAACTACCTAA+AGG | 0.575586 | 4.1:-14228479 | None:intergenic |
TACATGTGCAACATATCCTA+AGG | 0.579587 | 4.1:-14228859 | None:intergenic |
TCGAACATCATCTGGATCAG+TGG | 0.601549 | 4.1:-14225927 | None:intergenic |
TTCTGCTCTTAACCAAGCCA+AGG | 0.604417 | 4.1:+14226003 | MS.gene54557:CDS |
GATAGAGCTAACTTCTTCTG+AGG | 0.606180 | 4.1:+14229271 | MS.gene54557:CDS |
GAACATAAACCAGTTAATCA+GGG | 0.606763 | 4.1:+14228741 | MS.gene54557:CDS |
AGAAGAAGTTAGCTCTATCG+AGG | 0.617283 | 4.1:-14229267 | None:intergenic |
TTAACTGGTTTATGTTCGGG+AGG | 0.640495 | 4.1:-14228735 | None:intergenic |
GGAGGATGCTGGTAAGCAGG+AGG | 0.648190 | 4.1:+14226323 | MS.gene54557:CDS |
AGGCTGGCTAAGGAGGATGC+TGG | 0.655911 | 4.1:+14226312 | MS.gene54557:CDS |
AACCGTACGGGATAGCGTAG+AGG | 0.681236 | 4.1:-14229209 | None:intergenic |
GAAGAAGTTAGCTCTATCGA+GGG | 0.683985 | 4.1:-14229266 | None:intergenic |
TGATGTTCGACTGATTGACT+GGG | 0.717969 | 4.1:+14225940 | MS.gene54557:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATAATTAAATTTTTAAAAAT+CGG | + | chr4.1:14226614-14226633 | MS.gene54557:intron | 0.0% |
!! | TAACTAAAATAAACTATTTA+GGG | + | chr4.1:14226110-14226129 | MS.gene54557:intron | 10.0% |
!! | TTAACTAAAATAAACTATTT+AGG | + | chr4.1:14226109-14226128 | MS.gene54557:intron | 10.0% |
!! | AAAAAAAAAAAAAACTCTCA+AGG | + | chr4.1:14228034-14228053 | MS.gene54557:intron | 15.0% |
!! | AAAAAAAAAAAAACTCTCAA+GGG | + | chr4.1:14228035-14228054 | MS.gene54557:intron | 15.0% |
!! | TGTAAAAAATATGAACTTAT+TGG | - | chr4.1:14227947-14227966 | None:intergenic | 15.0% |
!!! | ATTAAATTTTTAAAAATCGG+CGG | + | chr4.1:14226617-14226636 | MS.gene54557:intron | 15.0% |
!! | AATAAAACCAGTGAATATTA+TGG | - | chr4.1:14228065-14228084 | None:intergenic | 20.0% |
!! | ACTATAAACATAGATAATCT+TGG | - | chr4.1:14226783-14226802 | None:intergenic | 20.0% |
!! | ACTATACAAATGAAATAGAA+AGG | - | chr4.1:14226966-14226985 | None:intergenic | 20.0% |
!! | AGCATATTTCAACAATTATT+AGG | - | chr4.1:14229129-14229148 | None:intergenic | 20.0% |
!! | CATATAAAAGAAGAAATTTG+AGG | + | chr4.1:14228568-14228587 | MS.gene54557:intron | 20.0% |
!! | TAGTTATAGTATGAGATTTA+AGG | - | chr4.1:14227983-14228002 | None:intergenic | 20.0% |
!! | TTATATACAGAAAACTTGAT+TGG | + | chr4.1:14229021-14229040 | MS.gene54557:intron | 20.0% |
!! | TTCTATTTCATTTGTATAGT+TGG | + | chr4.1:14226966-14226985 | MS.gene54557:intron | 20.0% |
!! | TTGTTAGTTAAATCCATATT+AGG | + | chr4.1:14227360-14227379 | MS.gene54557:intron | 20.0% |
!!! | AGAATTAGGTTTTTCATATA+GGG | + | chr4.1:14226086-14226105 | MS.gene54557:intron | 20.0% |
!!! | ATAATATTCACTGGTTTTAT+TGG | + | chr4.1:14228064-14228083 | MS.gene54557:intron | 20.0% |
!!! | ATGTTTTTATTTAGACTGAA+TGG | + | chr4.1:14227402-14227421 | MS.gene54557:intron | 20.0% |
!!! | GTTTTCTTGTGATAATATTA+TGG | - | chr4.1:14227854-14227873 | None:intergenic | 20.0% |
!!! | TAATATTCACTGGTTTTATT+GGG | + | chr4.1:14228065-14228084 | MS.gene54557:intron | 20.0% |
!!! | TGGAAAATTACTTTCTTTTT+AGG | + | chr4.1:14227291-14227310 | MS.gene54557:intron | 20.0% |
!!! | TTAAATTTTTAAAAATCGGC+GGG | + | chr4.1:14226618-14226637 | MS.gene54557:intron | 20.0% |
!!! | TTTTTTTTTTTCTTTCATCC+CGG | + | chr4.1:14226558-14226577 | MS.gene54557:intron | 20.0% |
! | AACACACATACTATAAAGTA+TGG | - | chr4.1:14227604-14227623 | None:intergenic | 25.0% |
! | AATAGGCATTTAAACTGTTT+AGG | + | chr4.1:14227010-14227029 | MS.gene54557:intron | 25.0% |
! | AATATCTGAAAAGAGAACAA+AGG | - | chr4.1:14229051-14229070 | None:intergenic | 25.0% |
! | ACTCAAAATGTCAACTAAAA+TGG | - | chr4.1:14226704-14226723 | None:intergenic | 25.0% |
! | AGATTTGGAAATTAATGAGT+TGG | + | chr4.1:14227178-14227197 | MS.gene54557:intron | 25.0% |
! | AGCAATAAATTTCTCAAAGA+AGG | - | chr4.1:14227528-14227547 | None:intergenic | 25.0% |
! | AGCGTATAAGGAATTATAAA+CGG | + | chr4.1:14226738-14226757 | MS.gene54557:intron | 25.0% |
! | AGCTTTCAAACTACAATAAT+AGG | - | chr4.1:14228278-14228297 | None:intergenic | 25.0% |
! | ATGATGATATTTATTCTGTG+TGG | + | chr4.1:14228513-14228532 | MS.gene54557:intron | 25.0% |
! | GAAAATTGCAAAAGATTCTA+AGG | + | chr4.1:14228363-14228382 | MS.gene54557:CDS | 25.0% |
! | GATGTAACTATTATGTTCTT+TGG | + | chr4.1:14227904-14227923 | MS.gene54557:intron | 25.0% |
! | GATTTGGAAATTAATGAGTT+GGG | + | chr4.1:14227179-14227198 | MS.gene54557:intron | 25.0% |
! | GTCAATAATATATGAATGAG+AGG | - | chr4.1:14229240-14229259 | None:intergenic | 25.0% |
! | TAGTTAAATCCATATTAGGT+GGG | + | chr4.1:14227364-14227383 | MS.gene54557:intron | 25.0% |
! | TGCAAATACAAAAAGTTGTA+CGG | - | chr4.1:14228136-14228155 | None:intergenic | 25.0% |
! | TGGAAAAAAGTTATTGGAAA+AGG | - | chr4.1:14227450-14227469 | None:intergenic | 25.0% |
! | TGGTTGACATTATGAATAAT+AGG | + | chr4.1:14226993-14227012 | MS.gene54557:intron | 25.0% |
! | TGTTGCATATATTAATAGCT+TGG | + | chr4.1:14227882-14227901 | MS.gene54557:intron | 25.0% |
! | TTAGTTAAATCCATATTAGG+TGG | + | chr4.1:14227363-14227382 | MS.gene54557:intron | 25.0% |
! | TTATACCATACACCATATTT+CGG | - | chr4.1:14227205-14227224 | None:intergenic | 25.0% |
!! | AAATCGTATCACATGATTTT+TGG | - | chr4.1:14228970-14228989 | None:intergenic | 25.0% |
!! | AAATTTTGTATTCTCAACTG+TGG | + | chr4.1:14229071-14229090 | MS.gene54557:intron | 25.0% |
!! | AACTCATGTGTTTTCATAAT+TGG | - | chr4.1:14226512-14226531 | None:intergenic | 25.0% |
!! | ACCTATAAATTTTGTAGCAA+GGG | + | chr4.1:14227093-14227112 | MS.gene54557:intron | 25.0% |
!! | ATATGAACTTATTGGTTACA+AGG | - | chr4.1:14227939-14227958 | None:intergenic | 25.0% |
!! | CAGAATTAGGTTTTTCATAT+AGG | + | chr4.1:14226085-14226104 | MS.gene54557:intron | 25.0% |
!! | CTGGGTAATTTTTAAACATA+AGG | - | chr4.1:14227050-14227069 | None:intergenic | 25.0% |
!! | GGTTTTCTATTCCTTAAATT+GGG | + | chr4.1:14228619-14228638 | MS.gene54557:intron | 25.0% |
!! | TAGTTTGCAATTTCCTAAAT+CGG | + | chr4.1:14226799-14226818 | MS.gene54557:intron | 25.0% |
!! | TGGTTTTCTATTCCTTAAAT+TGG | + | chr4.1:14228618-14228637 | MS.gene54557:intron | 25.0% |
!!! | AACTATTTAGGGTTTTTAGT+TGG | + | chr4.1:14226121-14226140 | MS.gene54557:intron | 25.0% |
!!! | GAGTTTTTTCACAGATAAAA+AGG | + | chr4.1:14228815-14228834 | MS.gene54557:CDS | 25.0% |
!!! | TCGTGTGATGTTTTATTTTT+GGG | + | chr4.1:14226589-14226608 | MS.gene54557:intron | 25.0% |
!!! | TTTTAGTTGACATTTTGAGT+AGG | + | chr4.1:14226704-14226723 | MS.gene54557:intron | 25.0% |
!!! | TTTTTTTTTTCTTTCATCCC+GGG | + | chr4.1:14226559-14226578 | MS.gene54557:intron | 25.0% |
AAATCACCTAGAAAAACTAC+CGG | + | chr4.1:14227140-14227159 | MS.gene54557:intron | 30.0% | |
AATTTGTAGACATCCGATTT+AGG | - | chr4.1:14226815-14226834 | None:intergenic | 30.0% | |
ACTGTTTAGGTGTTTCTTAA+AGG | + | chr4.1:14227023-14227042 | MS.gene54557:intron | 30.0% | |
AGAATATGTCTATACGTTCT+AGG | + | chr4.1:14226292-14226311 | MS.gene54557:CDS | 30.0% | |
AGAGACTATTAGGAAAGATT+TGG | + | chr4.1:14227163-14227182 | MS.gene54557:intron | 30.0% | |
AGATTACTGTCTGAAGAAAA+TGG | + | chr4.1:14228326-14228345 | MS.gene54557:CDS | 30.0% | |
ATAACTACTCTCAATTCTCA+GGG | + | chr4.1:14227996-14228015 | MS.gene54557:intron | 30.0% | |
CAAATAACACAGATGTGAAA+TGG | - | chr4.1:14227653-14227672 | None:intergenic | 30.0% | |
CACATACTATAAAGTATGGA+TGG | - | chr4.1:14227600-14227619 | None:intergenic | 30.0% | |
CAGTTTAATGGTGAATCATT+GGG | + | chr4.1:14226210-14226229 | MS.gene54557:intron | 30.0% | |
CCATCAATATAGAAAAGTCT+GGG | - | chr4.1:14227068-14227087 | None:intergenic | 30.0% | |
CTAAGAAAGGAAAGACAAAA+TGG | - | chr4.1:14226649-14226668 | None:intergenic | 30.0% | |
GAACATAAACCAGTTAATCA+GGG | + | chr4.1:14228741-14228760 | MS.gene54557:CDS | 30.0% | |
GAGACATGGAAAAAAGTTAT+TGG | - | chr4.1:14227456-14227475 | None:intergenic | 30.0% | |
GATATATAGACAAGCGTATA+AGG | + | chr4.1:14226726-14226745 | MS.gene54557:intron | 30.0% | |
GCATAAAGATATAAGATCTG+AGG | - | chr4.1:14228913-14228932 | None:intergenic | 30.0% | |
GGAATCAAAGAAATTGATCA+TGG | + | chr4.1:14226269-14226288 | MS.gene54557:CDS | 30.0% | |
TAAACGGTTGTAGATGTAAA+CGG | + | chr4.1:14226754-14226773 | MS.gene54557:intron | 30.0% | |
TATAACTACTCTCAATTCTC+AGG | + | chr4.1:14227995-14228014 | MS.gene54557:intron | 30.0% | |
TGGTGTATGGTATAACATTA+TGG | + | chr4.1:14227210-14227229 | MS.gene54557:intron | 30.0% | |
TGTGAGTTACAAACTGTAAA+AGG | + | chr4.1:14228099-14228118 | MS.gene54557:intron | 30.0% | |
! | ACAACTTTTTGTATTTGCAG+TGG | + | chr4.1:14228137-14228156 | MS.gene54557:intron | 30.0% |
! | ACATGTAACTAGGAAGTTTT+AGG | + | chr4.1:14227692-14227711 | MS.gene54557:intron | 30.0% |
! | ATCATACTGATAGCACTTTT+GGG | + | chr4.1:14228209-14228228 | MS.gene54557:intron | 30.0% |
! | ATGTGTTTTCATAATTGGTG+TGG | - | chr4.1:14226507-14226526 | None:intergenic | 30.0% |
! | ATTTTGAGCATGATCTTGTT+AGG | + | chr4.1:14225966-14225985 | MS.gene54557:CDS | 30.0% |
! | CCAGACTTTTCTATATTGAT+GGG | + | chr4.1:14227066-14227085 | MS.gene54557:intron | 30.0% |
! | CCTATAAATTTTGTAGCAAG+GGG | + | chr4.1:14227094-14227113 | MS.gene54557:intron | 30.0% |
! | CTGATTAACTGGTTTATGTT+CGG | - | chr4.1:14228742-14228761 | None:intergenic | 30.0% |
! | GACCTATAAATTTTGTAGCA+AGG | + | chr4.1:14227092-14227111 | MS.gene54557:intron | 30.0% |
! | TATAAGATCTGAGGTAAAGA+AGG | - | chr4.1:14228904-14228923 | None:intergenic | 30.0% |
! | TATCATACTGATAGCACTTT+TGG | + | chr4.1:14228208-14228227 | MS.gene54557:intron | 30.0% |
! | TCATTTGTATAGTTGGTACT+TGG | + | chr4.1:14226973-14226992 | MS.gene54557:intron | 30.0% |
! | TGATTAACTGGTTTATGTTC+GGG | - | chr4.1:14228741-14228760 | None:intergenic | 30.0% |
!! | AGGTTTTAGCAATCAGAATT+AGG | + | chr4.1:14226072-14226091 | MS.gene54557:intron | 30.0% |
!! | TTTCACATCTGTGTTATTTG+AGG | + | chr4.1:14227653-14227672 | MS.gene54557:intron | 30.0% |
!!! | CCAAATAAGATTTTGAGGTT+GGG | + | chr4.1:14227736-14227755 | MS.gene54557:intron | 30.0% |
!!! | GTCGTGTGATGTTTTATTTT+TGG | + | chr4.1:14226588-14226607 | MS.gene54557:intron | 30.0% |
!!! | TCCAAATAAGATTTTGAGGT+TGG | + | chr4.1:14227735-14227754 | MS.gene54557:intron | 30.0% |
AAACGGTTGTAGATGTAAAC+GGG | + | chr4.1:14226755-14226774 | MS.gene54557:intron | 35.0% | |
AATAGAAAACCAAGAGAGAG+TGG | - | chr4.1:14228610-14228629 | None:intergenic | 35.0% | |
ATAACCATCCGAATTTGTGT+TGG | - | chr4.1:14226938-14226957 | None:intergenic | 35.0% | |
ATAACTCTCGTTGCTAAGAA+AGG | - | chr4.1:14226662-14226681 | None:intergenic | 35.0% | |
ATAAGATTTGTGTGTGTAGG+AGG | - | chr4.1:14227480-14227499 | None:intergenic | 35.0% | |
ATATGCTTGGCATTTGTGAA+AGG | - | chr4.1:14229314-14229333 | None:intergenic | 35.0% | |
ATCTTTCCTAATAGTCTCTC+CGG | - | chr4.1:14227162-14227181 | None:intergenic | 35.0% | |
ATGGCTTCATCCTTATGAAA+AGG | - | chr4.1:14227835-14227854 | None:intergenic | 35.0% | |
CCCAACCTCAAAATCTTATT+TGG | - | chr4.1:14227739-14227758 | None:intergenic | 35.0% | |
CCCATCAATATAGAAAAGTC+TGG | - | chr4.1:14227069-14227088 | None:intergenic | 35.0% | |
CCCCTTGCTACAAAATTTAT+AGG | - | chr4.1:14227097-14227116 | None:intergenic | 35.0% | |
CGAACATAAACCAGTTAATC+AGG | + | chr4.1:14228740-14228759 | MS.gene54557:CDS | 35.0% | |
CTCAGTCATGTCTTACTTTA+GGG | - | chr4.1:14228546-14228565 | None:intergenic | 35.0% | |
CTTCATCCTTATGAAAAGGA+AGG | - | chr4.1:14227831-14227850 | None:intergenic | 35.0% | |
GCAGTTTAATGGTGAATCAT+TGG | + | chr4.1:14226209-14226228 | MS.gene54557:intron | 35.0% | |
GGTTCAACCAAAAACTTTAC+AGG | - | chr4.1:14228431-14228450 | None:intergenic | 35.0% | |
TAACTACTCTCAATTCTCAG+GGG | + | chr4.1:14227997-14228016 | MS.gene54557:intron | 35.0% | |
TAAGATTTGTGTGTGTAGGA+GGG | - | chr4.1:14227479-14227498 | None:intergenic | 35.0% | |
TAATAGTGTTCATTCACTGC+TGG | + | chr4.1:14227556-14227575 | MS.gene54557:intron | 35.0% | |
TACATGTGCAACATATCCTA+AGG | - | chr4.1:14228862-14228881 | None:intergenic | 35.0% | |
TAGACTTTCTTCTTCTTCTC+AGG | + | chr4.1:14229154-14229173 | MS.gene54557:intron | 35.0% | |
TATACCATAAACTGACCTGA+AGG | - | chr4.1:14226416-14226435 | None:intergenic | 35.0% | |
TCAGTCATGTCTTACTTTAG+GGG | - | chr4.1:14228545-14228564 | None:intergenic | 35.0% | |
TCCATAAGATTTGTGTGTGT+AGG | - | chr4.1:14227483-14227502 | None:intergenic | 35.0% | |
TCCTACACACACAAATCTTA+TGG | + | chr4.1:14227479-14227498 | MS.gene54557:intron | 35.0% | |
TGAAGAGATGCGTCAAAAAT+TGG | + | chr4.1:14226248-14226267 | MS.gene54557:CDS | 35.0% | |
TTTGTCTGTGAGCAGTTTAA+TGG | + | chr4.1:14226198-14226217 | MS.gene54557:intron | 35.0% | |
! | AGAAATTTGAGGTGCTAAGA+TGG | + | chr4.1:14228579-14228598 | MS.gene54557:intron | 35.0% |
! | AGTTTTTGTATGGCTCATGT+GGG | + | chr4.1:14229095-14229114 | MS.gene54557:intron | 35.0% |
! | CAACTGTGGTAGTTTTTGTA+TGG | + | chr4.1:14229085-14229104 | MS.gene54557:intron | 35.0% |
! | CCCAGACTTTTCTATATTGA+TGG | + | chr4.1:14227065-14227084 | MS.gene54557:intron | 35.0% |
! | GCTCTCCAAATAAGATTTTG+AGG | + | chr4.1:14227731-14227750 | MS.gene54557:intron | 35.0% |
! | GCTGATGATGCTGTTATTAT+AGG | + | chr4.1:14228295-14228314 | MS.gene54557:intron | 35.0% |
! | GCTGTATCCTGTAAAGTTTT+TGG | + | chr4.1:14228421-14228440 | MS.gene54557:CDS | 35.0% |
! | GTCTTGGCCTTCTAAAAATA+GGG | - | chr4.1:14229345-14229364 | None:intergenic | 35.0% |
! | TAGTTTTTGTATGGCTCATG+TGG | + | chr4.1:14229094-14229113 | MS.gene54557:intron | 35.0% |
! | TCATACTGATAGCACTTTTG+GGG | + | chr4.1:14228210-14228229 | MS.gene54557:intron | 35.0% |
! | TCTTGGCCTTCTAAAAATAG+GGG | - | chr4.1:14229344-14229363 | None:intergenic | 35.0% |
! | TGCAAAAGATTCTAAGGATG+AGG | + | chr4.1:14228369-14228388 | MS.gene54557:CDS | 35.0% |
! | TGTCTTGGCCTTCTAAAAAT+AGG | - | chr4.1:14229346-14229365 | None:intergenic | 35.0% |
!!! | GAATTCCCCCTATTTTTAGA+AGG | + | chr4.1:14229335-14229354 | MS.gene54557:CDS | 35.0% |
!!! | GTATCACATGATTTTTGGTG+TGG | - | chr4.1:14228965-14228984 | None:intergenic | 35.0% |
!!! | TGTAACTAGGAAGTTTTAGG+AGG | + | chr4.1:14227695-14227714 | MS.gene54557:intron | 35.0% |
AAACTACCGGAGAGACTATT+AGG | + | chr4.1:14227153-14227172 | MS.gene54557:intron | 40.0% | |
AAGATTTGTGTGTGTAGGAG+GGG | - | chr4.1:14227478-14227497 | None:intergenic | 40.0% | |
AAGGATGAGGCAACAATACA+TGG | + | chr4.1:14228382-14228401 | MS.gene54557:CDS | 40.0% | |
AAGGTTTCGTTTCTTCTCCT+TGG | - | chr4.1:14226023-14226042 | None:intergenic | 40.0% | |
AATACGCGGGCTCATTAATT+AGG | - | chr4.1:14226165-14226184 | None:intergenic | 40.0% | |
AGGGTCATTGACATGTAACT+AGG | + | chr4.1:14227682-14227701 | MS.gene54557:intron | 40.0% | |
ATACGCGGGCTCATTAATTA+GGG | - | chr4.1:14226164-14226183 | None:intergenic | 40.0% | |
ATCTCATAGCCCACCTAATA+TGG | - | chr4.1:14227376-14227395 | None:intergenic | 40.0% | |
ATGATGTTCGACTGATTGAC+TGG | + | chr4.1:14225939-14225958 | MS.gene54557:CDS | 40.0% | |
CAAGTCAGCCAACACAAATT+CGG | + | chr4.1:14226927-14226946 | MS.gene54557:intron | 40.0% | |
CATCCTTATGAAAAGGAAGG+AGG | - | chr4.1:14227828-14227847 | None:intergenic | 40.0% | |
CATGCAAGAAAGAGAACAAC+AGG | - | chr4.1:14227321-14227340 | None:intergenic | 40.0% | |
CTTTGTGAATGTGAGGCTTT+GGG | + | chr4.1:14227779-14227798 | MS.gene54557:intron | 40.0% | |
GAAACCTTCAGGTCAGTTTA+TGG | + | chr4.1:14226409-14226428 | MS.gene54557:intron | 40.0% | |
GAACACAACAGCCCAATTTA+AGG | - | chr4.1:14228633-14228652 | None:intergenic | 40.0% | |
GAGCTTGAAGCATATCCTTT+AGG | + | chr4.1:14228464-14228483 | MS.gene54557:CDS | 40.0% | |
GATAGAGCTAACTTCTTCTG+AGG | + | chr4.1:14229271-14229290 | MS.gene54557:CDS | 40.0% | |
GCTCAGTCATGTCTTACTTT+AGG | - | chr4.1:14228547-14228566 | None:intergenic | 40.0% | |
GGGAAGTCCATAATATTCAC+TGG | + | chr4.1:14228055-14228074 | MS.gene54557:intron | 40.0% | |
GTCAAAGATCCCTGATTAAC+TGG | - | chr4.1:14228753-14228772 | None:intergenic | 40.0% | |
TAGAGGAACTTGCAAGTATG+AGG | - | chr4.1:14229195-14229214 | None:intergenic | 40.0% | |
TAGGGGGAATTCTATATGCT+TGG | - | chr4.1:14229327-14229346 | None:intergenic | 40.0% | |
TATCCTTTAGGTAGTTCAGC+AGG | + | chr4.1:14228476-14228495 | MS.gene54557:CDS | 40.0% | |
TCAATCAGTCGAACATCATC+TGG | - | chr4.1:14225938-14225957 | None:intergenic | 40.0% | |
TCTGATTGCTAAAACCTACC+TGG | - | chr4.1:14226069-14226088 | None:intergenic | 40.0% | |
TGATGTTCGACTGATTGACT+GGG | + | chr4.1:14225940-14225959 | MS.gene54557:CDS | 40.0% | |
TGTAACTAGCAGAAACCTTC+AGG | + | chr4.1:14226398-14226417 | MS.gene54557:CDS | 40.0% | |
TTACCTGCTGAACTACCTAA+AGG | - | chr4.1:14228482-14228501 | None:intergenic | 40.0% | |
TTAGGTAGTTCAGCAGGTAA+TGG | + | chr4.1:14228482-14228501 | MS.gene54557:intron | 40.0% | |
TTATGAAAAGGAAGGAGGAC+AGG | - | chr4.1:14227823-14227842 | None:intergenic | 40.0% | |
TTGTGTTTATATCCTTGCCC+AGG | + | chr4.1:14228708-14228727 | MS.gene54557:intron | 40.0% | |
! | AAAGGCTTGGTTGTTGTTGA+TGG | + | chr4.1:14227271-14227290 | MS.gene54557:intron | 40.0% |
! | ATCTGAGGTAAAGAAGGCAA+GGG | - | chr4.1:14228898-14228917 | None:intergenic | 40.0% |
! | CTTGGCCTTCTAAAAATAGG+GGG | - | chr4.1:14229343-14229362 | None:intergenic | 40.0% |
! | TAATGAGTTGGGCCGAAATA+TGG | + | chr4.1:14227190-14227209 | MS.gene54557:intron | 40.0% |
! | TATGTCTATACGTTCTAGGC+TGG | + | chr4.1:14226296-14226315 | MS.gene54557:CDS | 40.0% |
! | TGTCCTCCTTCCTTTTCATA+AGG | + | chr4.1:14227822-14227841 | MS.gene54557:intron | 40.0% |
! | TTAACTGGTTTATGTTCGGG+AGG | - | chr4.1:14228738-14228757 | None:intergenic | 40.0% |
! | TTTAGGAGGTGTGCTAATGA+TGG | + | chr4.1:14227709-14227728 | MS.gene54557:intron | 40.0% |
! | TTTTTGTATTTGCAGTGGCG+AGG | + | chr4.1:14228142-14228161 | MS.gene54557:intron | 40.0% |
!! | AGAAGAAGTTAGCTCTATCG+AGG | - | chr4.1:14229270-14229289 | None:intergenic | 40.0% |
!! | GAAGAAGTTAGCTCTATCGA+GGG | - | chr4.1:14229269-14229288 | None:intergenic | 40.0% |
!! | GTGTTATTTGAGGTCAGAGA+GGG | + | chr4.1:14227663-14227682 | MS.gene54557:intron | 40.0% |
!! | TAGGTGGGCTATGAGATAAT+CGG | + | chr4.1:14227379-14227398 | MS.gene54557:intron | 40.0% |
!! | TGTGTTATTTGAGGTCAGAG+AGG | + | chr4.1:14227662-14227681 | MS.gene54557:intron | 40.0% |
ACATCACACGACACTAAACC+CGG | - | chr4.1:14226580-14226599 | None:intergenic | 45.0% | |
CAACATGTCTGCAGTAGTCA+AGG | - | chr4.1:14228176-14228195 | None:intergenic | 45.0% | |
CAGAAATCTGCTACAGCCTT+AGG | + | chr4.1:14228843-14228862 | MS.gene54557:CDS | 45.0% | |
CAGGGATCTTTGACGATTCA+GGG | + | chr4.1:14228759-14228778 | MS.gene54557:CDS | 45.0% | |
CCAAAGCCTCACATTCACAA+AGG | - | chr4.1:14227781-14227800 | None:intergenic | 45.0% | |
CCTTTGTGAATGTGAGGCTT+TGG | + | chr4.1:14227778-14227797 | MS.gene54557:intron | 45.0% | |
TCAGCCAACACAAATTCGGA+TGG | + | chr4.1:14226931-14226950 | MS.gene54557:intron | 45.0% | |
TCAGGGATCTTTGACGATTC+AGG | + | chr4.1:14228758-14228777 | MS.gene54557:CDS | 45.0% | |
TCGAACATCATCTGGATCAG+TGG | - | chr4.1:14225930-14225949 | None:intergenic | 45.0% | |
TTAATGAGCCCGCGTATTAG+CGG | + | chr4.1:14226167-14226186 | MS.gene54557:intron | 45.0% | |
TTCGTTTCTTCTCCTTGGCT+TGG | - | chr4.1:14226018-14226037 | None:intergenic | 45.0% | |
TTCTGCTCTTAACCAAGCCA+AGG | + | chr4.1:14226003-14226022 | MS.gene54557:CDS | 45.0% | |
TTGGGCCGAAATATGGTGTA+TGG | + | chr4.1:14227197-14227216 | MS.gene54557:intron | 45.0% | |
! | AAGCCTTTTCCCACTAAGTG+GGG | - | chr4.1:14227259-14227278 | None:intergenic | 45.0% |
! | AAGCTGCTCTTGTTGTGTCT+TGG | - | chr4.1:14229361-14229380 | None:intergenic | 45.0% |
! | CAAGCCTTTTCCCACTAAGT+GGG | - | chr4.1:14227260-14227279 | None:intergenic | 45.0% |
! | GATCTGAGGTAAAGAAGGCA+AGG | - | chr4.1:14228899-14228918 | None:intergenic | 45.0% |
! | GTCTCTCCGGTAGTTTTTCT+AGG | - | chr4.1:14227149-14227168 | None:intergenic | 45.0% |
! | TATACGTTCTAGGCTGGCTA+AGG | + | chr4.1:14226302-14226321 | MS.gene54557:CDS | 45.0% |
!! | TGGTGCTTTGCAGTCACTTT+TGG | + | chr4.1:14226356-14226375 | MS.gene54557:CDS | 45.0% |
!!! | TGCTTTGCAGTCACTTTTGG+TGG | + | chr4.1:14226359-14226378 | MS.gene54557:CDS | 45.0% |
!!! | TTTGCAGTCACTTTTGGTGG+CGG | + | chr4.1:14226362-14226381 | MS.gene54557:CDS | 45.0% |
AAGCAGGAGGAGCAACTTAG+TGG | + | chr4.1:14226336-14226355 | MS.gene54557:CDS | 50.0% | |
AAGGGGAGTAGATCAGATGG+AGG | + | chr4.1:14227111-14227130 | MS.gene54557:intron | 50.0% | |
AATCATCGCCCGCTAATACG+CGG | - | chr4.1:14226179-14226198 | None:intergenic | 50.0% | |
ACTAAGTGGGGTCAGCTACA+TGG | - | chr4.1:14227247-14227266 | None:intergenic | 50.0% | |
AGCAAGGGGAGTAGATCAGA+TGG | + | chr4.1:14227108-14227127 | MS.gene54557:intron | 50.0% | |
ATGTAGCTGACCCCACTTAG+TGG | + | chr4.1:14227246-14227265 | MS.gene54557:intron | 50.0% | |
CAAACTCGAGTCTCTCATCC+AGG | + | chr4.1:14226048-14226067 | MS.gene54557:CDS | 50.0% | |
CATCACACGACACTAAACCC+GGG | - | chr4.1:14226579-14226598 | None:intergenic | 50.0% | |
CATGTCTGCAGTAGTCAAGG+AGG | - | chr4.1:14228173-14228192 | None:intergenic | 50.0% | |
CCACTTAGTGGGAAAAGGCT+TGG | + | chr4.1:14227258-14227277 | MS.gene54557:intron | 50.0% | |
CCTCACATTCACAAAGGCTG+AGG | - | chr4.1:14227775-14227794 | None:intergenic | 50.0% | |
CCTCAGCCTTTGTGAATGTG+AGG | + | chr4.1:14227772-14227791 | MS.gene54557:intron | 50.0% | |
CGGGCTCATTAATTAGGGAC+AGG | - | chr4.1:14226159-14226178 | None:intergenic | 50.0% | |
GAGACTCGAGTTTGTGCTGA+AGG | - | chr4.1:14226042-14226061 | None:intergenic | 50.0% | |
TAAGGAGGATGCTGGTAAGC+AGG | + | chr4.1:14226320-14226339 | MS.gene54557:CDS | 50.0% | |
TAATGAGCCCGCGTATTAGC+GGG | + | chr4.1:14226168-14226187 | MS.gene54557:intron | 50.0% | |
TCAAGCTCTTGCTCTTGTGC+TGG | - | chr4.1:14228452-14228471 | None:intergenic | 50.0% | |
TGACCCCACTTAGTGGGAAA+AGG | + | chr4.1:14227253-14227272 | MS.gene54557:intron | 50.0% | |
TGAGGTAAAGAAGGCAAGGG+AGG | - | chr4.1:14228895-14228914 | None:intergenic | 50.0% | |
TGTAGCTGACCCCACTTAGT+GGG | + | chr4.1:14227247-14227266 | MS.gene54557:intron | 50.0% | |
TTCCTCTACGCTATCCCGTA+CGG | + | chr4.1:14229207-14229226 | MS.gene54557:CDS | 50.0% | |
! | ATGGTTCTGCCACTCTCTCT+TGG | + | chr4.1:14228598-14228617 | MS.gene54557:intron | 50.0% |
! | CCAAGCCTTTTCCCACTAAG+TGG | - | chr4.1:14227261-14227280 | None:intergenic | 50.0% |
!!! | TTGCAGTCACTTTTGGTGGC+GGG | + | chr4.1:14226363-14226382 | MS.gene54557:CDS | 50.0% |
AACCGTACGGGATAGCGTAG+AGG | - | chr4.1:14229212-14229231 | None:intergenic | 55.0% | |
ATCATCGCCCGCTAATACGC+GGG | - | chr4.1:14226178-14226197 | None:intergenic | 55.0% | |
CTACGCTATCCCGTACGGTT+GGG | + | chr4.1:14229212-14229231 | MS.gene54557:CDS | 55.0% | |
CTCGAGTCTCTCATCCAGGT+AGG | + | chr4.1:14226052-14226071 | MS.gene54557:intron | 55.0% | |
GTATGGCTCATGTGGGACTG+TGG | + | chr4.1:14229102-14229121 | MS.gene54557:intron | 55.0% | |
TCTACGCTATCCCGTACGGT+TGG | + | chr4.1:14229211-14229230 | MS.gene54557:CDS | 55.0% | |
TGTGTGTAGGAGGGGAGACA+TGG | - | chr4.1:14227470-14227489 | None:intergenic | 55.0% | |
! | ACGTTCTAGGCTGGCTAAGG+AGG | + | chr4.1:14226305-14226324 | MS.gene54557:CDS | 55.0% |
!! | ATGAGAGGCACCCAACCGTA+CGG | - | chr4.1:14229225-14229244 | None:intergenic | 55.0% |
!! | TATGTTCGGGAGGAGTGCCT+GGG | - | chr4.1:14228728-14228747 | None:intergenic | 55.0% |
!! | TTATGTTCGGGAGGAGTGCC+TGG | - | chr4.1:14228729-14228748 | None:intergenic | 55.0% |
GGAGGATGCTGGTAAGCAGG+AGG | + | chr4.1:14226323-14226342 | MS.gene54557:CDS | 60.0% | |
! | AGGCTGGCTAAGGAGGATGC+TGG | + | chr4.1:14226312-14226331 | MS.gene54557:CDS | 60.0% |
!! | TGAGAGGCACCCAACCGTAC+GGG | - | chr4.1:14229224-14229243 | None:intergenic | 60.0% |
!!! | CAGTCACTTTTGGTGGCGGG+TGG | + | chr4.1:14226366-14226385 | MS.gene54557:CDS | 60.0% |
!! | TCGGGAGGAGTGCCTGGGCA+AGG | - | chr4.1:14228723-14228742 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 14225890 | 14229403 | 14225890 | ID=MS.gene54557 |
chr4.1 | mRNA | 14225890 | 14229403 | 14225890 | ID=MS.gene54557.t1;Parent=MS.gene54557 |
chr4.1 | exon | 14225890 | 14226069 | 14225890 | ID=MS.gene54557.t1.exon1;Parent=MS.gene54557.t1 |
chr4.1 | CDS | 14225890 | 14226069 | 14225890 | ID=cds.MS.gene54557.t1;Parent=MS.gene54557.t1 |
chr4.1 | exon | 14226213 | 14226419 | 14226213 | ID=MS.gene54557.t1.exon2;Parent=MS.gene54557.t1 |
chr4.1 | CDS | 14226213 | 14226419 | 14226213 | ID=cds.MS.gene54557.t1;Parent=MS.gene54557.t1 |
chr4.1 | exon | 14228317 | 14228497 | 14228317 | ID=MS.gene54557.t1.exon3;Parent=MS.gene54557.t1 |
chr4.1 | CDS | 14228317 | 14228497 | 14228317 | ID=cds.MS.gene54557.t1;Parent=MS.gene54557.t1 |
chr4.1 | exon | 14228730 | 14228878 | 14228730 | ID=MS.gene54557.t1.exon4;Parent=MS.gene54557.t1 |
chr4.1 | CDS | 14228730 | 14228878 | 14228730 | ID=cds.MS.gene54557.t1;Parent=MS.gene54557.t1 |
chr4.1 | exon | 14229176 | 14229403 | 14229176 | ID=MS.gene54557.t1.exon5;Parent=MS.gene54557.t1 |
chr4.1 | CDS | 14229176 | 14229403 | 14229176 | ID=cds.MS.gene54557.t1;Parent=MS.gene54557.t1 |
Gene Sequence |
Protein sequence |