AlfalfaGEDB | MS.gene54557

M. sativa cultivar XinJiangDaYe / MS.gene54557

KEGG: K21249
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54557.t1	XP_003629676.1	95.6	315	14	0	1	315	1	315	2.10E-157	565.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54557.t1	Q8K245	25.3	289	159	8	31	315	195	430	7.5e-07	56.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54557.t1	G7LHV8	95.6	315	14	0	1	315	1	315	1.5e-157	565.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049166	MS.gene54557	0.815871	7.40E-52	-1.69E-46
MS.gene049283	MS.gene54557	0.803284	3.75E-49	-1.69E-46
MS.gene050317	MS.gene54557	0.808931	2.43E-50	-1.69E-46
MS.gene050838	MS.gene54557	0.802084	6.64E-49	-1.69E-46
MS.gene051003	MS.gene54557	0.806607	7.58E-50	-1.69E-46
MS.gene051902	MS.gene54557	0.828715	7.71E-55	-1.69E-46
MS.gene051975	MS.gene54557	0.809617	1.73E-50	-1.69E-46
MS.gene052072	MS.gene54557	0.80136	9.34E-49	-1.69E-46
MS.gene052434	MS.gene54557	0.816573	5.16E-52	-1.69E-46
MS.gene052818	MS.gene54557	-0.812134	4.94E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54557.t1	MTR_8g085350	95.556	315	14	0	1	315	1	315	0.0	587
MS.gene54557.t1	MTR_8g085350	95.021	241	12	0	75	315	1	241	3.61e-167	466

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54557.t1	AT2G32760	56.291	302	128	1	14	315	16	313	1.72e-113	332
MS.gene54557.t1	AT2G32760	55.602	241	103	1	75	315	1	237	8.02e-88	264
MS.gene54557.t1	AT2G32760	55.602	241	103	1	75	315	1	237	8.02e-88	264

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Find 56 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCGTACGGGATAGCGTAG+AGG	0.681236	4.1:-14229209	None:intergenic
AAGCAGGAGGAGCAACTTAG+TGG	0.523359	4.1:+14226336	MS.gene54557:CDS
AAGCTGCTCTTGTTGTGTCT+TGG	0.428578	4.1:-14229358	None:intergenic
AAGGATGAGGCAACAATACA+TGG	0.532227	4.1:+14228382	MS.gene54557:CDS
AAGGTTTCGTTTCTTCTCCT+TGG	0.365059	4.1:-14226020	None:intergenic
ACGTTCTAGGCTGGCTAAGG+AGG	0.558899	4.1:+14226305	MS.gene54557:CDS
AGAAGAAGTTAGCTCTATCG+AGG	0.617283	4.1:-14229267	None:intergenic
AGAATATGTCTATACGTTCT+AGG	0.347316	4.1:+14226292	MS.gene54557:CDS
AGATTACTGTCTGAAGAAAA+TGG	0.354501	4.1:+14228326	MS.gene54557:CDS
AGGCTGGCTAAGGAGGATGC+TGG	0.655911	4.1:+14226312	MS.gene54557:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCACCTAGAAAAACTAC+CGG	+	chr4.1:14227140-14227159	MS.gene54557:intron	30.0%
AATTTGTAGACATCCGATTT+AGG	-	chr4.1:14226815-14226834	None:intergenic	30.0%
ACTGTTTAGGTGTTTCTTAA+AGG	+	chr4.1:14227023-14227042	MS.gene54557:intron	30.0%
AGAATATGTCTATACGTTCT+AGG	+	chr4.1:14226292-14226311	MS.gene54557:CDS	30.0%
AGAGACTATTAGGAAAGATT+TGG	+	chr4.1:14227163-14227182	MS.gene54557:intron	30.0%
AGATTACTGTCTGAAGAAAA+TGG	+	chr4.1:14228326-14228345	MS.gene54557:CDS	30.0%
ATAACTACTCTCAATTCTCA+GGG	+	chr4.1:14227996-14228015	MS.gene54557:intron	30.0%
CAAATAACACAGATGTGAAA+TGG	-	chr4.1:14227653-14227672	None:intergenic	30.0%
CACATACTATAAAGTATGGA+TGG	-	chr4.1:14227600-14227619	None:intergenic	30.0%
CAGTTTAATGGTGAATCATT+GGG	+	chr4.1:14226210-14226229	MS.gene54557:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	14225890	14229403	14225890	ID=MS.gene54557
chr4.1	mRNA	14225890	14229403	14225890	ID=MS.gene54557.t1;Parent=MS.gene54557
chr4.1	exon	14225890	14226069	14225890	ID=MS.gene54557.t1.exon1;Parent=MS.gene54557.t1
chr4.1	CDS	14225890	14226069	14225890	ID=cds.MS.gene54557.t1;Parent=MS.gene54557.t1
chr4.1	exon	14226213	14226419	14226213	ID=MS.gene54557.t1.exon2;Parent=MS.gene54557.t1
chr4.1	CDS	14226213	14226419	14226213	ID=cds.MS.gene54557.t1;Parent=MS.gene54557.t1
chr4.1	exon	14228317	14228497	14228317	ID=MS.gene54557.t1.exon3;Parent=MS.gene54557.t1
chr4.1	CDS	14228317	14228497	14228317	ID=cds.MS.gene54557.t1;Parent=MS.gene54557.t1
chr4.1	exon	14228730	14228878	14228730	ID=MS.gene54557.t1.exon4;Parent=MS.gene54557.t1
chr4.1	CDS	14228730	14228878	14228730	ID=cds.MS.gene54557.t1;Parent=MS.gene54557.t1
chr4.1	exon	14229176	14229403	14229176	ID=MS.gene54557.t1.exon5;Parent=MS.gene54557.t1
chr4.1	CDS	14229176	14229403	14229176	ID=cds.MS.gene54557.t1;Parent=MS.gene54557.t1

Gene Sequence

>MS.gene54557

ATGGAACAAAATCTAAATCTCACATTGCTCACAACTTCCACTGATCCAGATGATGTTCGACTGATTGACTGGGAAGATTTTGAGCATGATCTTGTTAGGTTATCGAGTCTCTCTTCTGCTCTTAACCAAGCCAAGGAGAAGAAACGAAACCTTCAGCACAAACTCGAGTCTCTCATCCAGGTAGGTTTTAGCAATCAGAATTAGGTTTTTCATATAGGGTTAACTAAAATAAACTATTTAGGGTTTTTAGTTGGTTGTTAGTTAGACCTGTCCCTAATTAATGAGCCCGCGTATTAGCGGGCGATGATTTTGTCTGTGAGCAGTTTAATGGTGAATCATTGGGTCGATTGAATGAACTTGAAGAGATGCGTCAAAAATTGGAATCAAAGAAATTGATCATGGAGAATATGTCTATACGTTCTAGGCTGGCTAAGGAGGATGCTGGTAAGCAGGAGGAGCAACTTAGTGGTGCTTTGCAGTCACTTTTGGTGGCGGGTGGTACTCTCTCTGTAACTAGCAGAAACCTTCAGGTCAGTTTATGGTATATAATAATTATGAATTTAATTAGTACACTCAACTTATAATTATTTTACATGCGTATCTAATGATGTTTGCCACACCAATTATGAAAACACATGAGTTGTCATGTTATTTTTGCTTACAAAATGTTTTTTTTTTTCTTTCATCCCGGGTTTAGTGTCGTGTGATGTTTTATTTTTGGGAAATAATTAAATTTTTAAAAATCGGCGGGCTTTTCCATTTTGTCTTTCCTTTCTTAGCAACGAGAGTTATGAATCTTGTCTTTTTTGTACCATTTTAGTTGACATTTTGAGTAGGATATATAGACAAGCGTATAAGGAATTATAAACGGTTGTAGATGTAAACGGGTTCCAAGATTATCTATGTTTATAGTTTGCAATTTCCTAAATCGGATGTCTACAAATTTAGTTTATCTTACGACGTATAAAGCTTTTCAAATTGTATATATCATTTGACATCGTTAAAAAAGTTTTGAAGTTGAAGACACTAGCAAGCAACAAGTCAGCCAACACAAATTCGGATGGTTATACGATCCTTTCTATTTCATTTGTATAGTTGGTACTTGGTTGACATTATGAATAATAGGCATTTAAACTGTTTAGGTGTTTCTTAAAGGTCCTTATGTTTAAAAATTACCCAGACTTTTCTATATTGATGGGAAAGACCTATAAATTTTGTAGCAAGGGGAGTAGATCAGATGGAGGACAGTCAAATCACCTAGAAAAACTACCGGAGAGACTATTAGGAAAGATTTGGAAATTAATGAGTTGGGCCGAAATATGGTGTATGGTATAACATTATGGCGTAATTTGATCCATGTAGCTGACCCCACTTAGTGGGAAAAGGCTTGGTTGTTGTTGATGGAAAATTACTTTCTTTTTAGGAAGTCCTGTTGTTCTCTTTCTTGCATGTTTTGTCAGCTGTGACTTTTTGTTAGTTAAATCCATATTAGGTGGGCTATGAGATAATCGGATGTTTTTATTTAGACTGAATGGTAAAATTTGAATACTTTCAGTTCCTTTTCCAATAACTTTTTTCCATGTCTCCCCTCCTACACACACAAATCTTATGGAGTAAGCACTGCTATAATGTCTACCTTCTTTGAGAAATTTATTGCTCTGTTGCTTAATAGTGTTCATTCACTGCTGGTGTGAGAACTCAATAAGACCATCCATACTTTATAGTATGTGTGTTTTTGAGAACTTTCACGAGTTGTGCATCCATTTCACATCTGTGTTATTTGAGGTCAGAGAGGGTCATTGACATGTAACTAGGAAGTTTTAGGAGGTGTGCTAATGATGGCTCTCCAAATAAGATTTTGAGGTTGGGTAATGTACAATGACCTCAGCCTTTGTGAATGTGAGGCTTTGGGATAACTTCTTTTCTTGTTCCTGTCCTCCTTCCTTTTCATAAGGATGAAGCCATAATATTATCACAAGAAAACTAAATAGATGTTGCATATATTAATAGCTTGGATGTAACTATTATGTTCTTTGGCGTATTCTACCTTGTAACCAATAAGTTCATATTTTTTACAACATTGAGTGAAGCCTTAAATCTCATACTATAACTACTCTCAATTCTCAGGGGAATTTATGTCAAAAAAAAAAAAAAAAAACTCTCAAGGGAAGTCCATAATATTCACTGGTTTTATTGGGTCTAAGAGTTTTGTGAGTTACAAACTGTAAAAGGCAATGCTGCTTCCGTACAACTTTTTGTATTTGCAGTGGCGAGGTGATGCCTCCTTGACTACTGCAGACATGTTGCTATCTATTAATTATCATACTGATAGCACTTTTGGGGATTTTATTTTTAAAATTAAAAATAGTAGTGTCATATGTTACTCCTATTATTGTAGTTTGAAAGCTGATGATGCTGTTATTATAGGAAACAAGTAGATTACTGTCTGAAGAAAATGGCTATGTTCGTCTGAGAAAATTGCAAAAGATTCTAAGGATGAGGCAACAATACATGGCATCTCAAATTTCAATGCTGTATCCTGTAAAGTTTTTGGTTGAACCAGCACAAGAGCAAGAGCTTGAAGCATATCCTTTAGGTAGTTCAGCAGGTAATGGTTAGTTCAATGATGATATTTATTCTGTGTGGATTTTACCCCTAAAGTAAGACATGACTGAGCTCATATAAAAGAAGAAATTTGAGGTGCTAAGATGGTTCTGCCACTCTCTCTTGGTTTTCTATTCCTTAAATTGGGCTGTTGTGTTCTCTCGTTCTGCATCTCATGATTTAAATTATATCTTCTCAGAATCGTTATTAAAAATTGTGTTTATATCCTTGCCCAGGCACTCCTCCCGAACATAAACCAGTTAATCAGGGATCTTTGACGATTCAGGGTCTGCATTTAAGTATGCTATCATTTAGAAAGATGAGTTTTTTCACAGATAAAAAGGAAATTCAGAAATCTGCTACAGCCTTAGGATATGTTGCACATGTAAGTTTTAGTACCTCCCTTGCCTTCTTTACCTCAGATCTTATATCTTTATGCATTAATTTATGTCTTGTGTTTTTTATGATCCACACCAAAAATCATGTGATACGATTTCTAAATTGTCATATGCATATTGCATCACGTCTTATATACAGAAAACTTGATTGGTTGTCCTTTGTTCTCTTTTCAGATATTAAATTTTGTATTCTCAACTGTGGTAGTTTTTGTATGGCTCATGTGGGACTGTGGACCTAATAATTGTTGAAATATGCTTTTAATAGACTTTCTTCTTCTTCTCAGGCTGTTTCACTTATAGCCTCATACTTGCAAGTTCCTCTACGCTATCCCGTACGGTTGGGTGCCTCTCATTCATATATTATTGACAATGCACCCTCGATAGAGCTAACTTCTTCTGAGGCTTCAACAAGCACAAAACCTTTCACAAATGCCAAGCATATAGAATTCCCCCTATTTTTAGAAGGCCAAGACACAACAAGAGCAGCTTATGCCGTATTCTTACTAAGCAAG

Protein sequence

>MS.gene54557.t1

MEQNLNLTLLTTSTDPDDVRLIDWEDFEHDLVRLSSLSSALNQAKEKKRNLQHKLESLIQFNGESLGRLNELEEMRQKLESKKLIMENMSIRSRLAKEDAGKQEEQLSGALQSLLVAGGTLSVTSRNLQETSRLLSEENGYVRLRKLQKILRMRQQYMASQISMLYPVKFLVEPAQEQELEAYPLGSSAGTPPEHKPVNQGSLTIQGLHLSMLSFRKMSFFTDKKEIQKSATALGYVAHAVSLIASYLQVPLRYPVRLGASHSYIIDNAPSIELTSSEASTSTKPFTNAKHIEFPLFLEGQDTTRAAYAVFLLSK