Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54669.t1 | RHN49875.1 | 93.5 | 602 | 39 | 0 | 2 | 603 | 14 | 615 | 0.00E+00 | 1153.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54669.t1 | Q9SGH6 | 73.3 | 604 | 160 | 1 | 1 | 603 | 36 | 639 | 1.5e-269 | 929.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54669.t1 | A0A072U5H0 | 93.5 | 602 | 39 | 0 | 2 | 603 | 20 | 621 | 0.0e+00 | 1153.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene54669 | 0.807389 | 5.18E-50 | -1.69E-46 |
| MS.gene049821 | MS.gene54669 | 0.809793 | 1.59E-50 | -1.69E-46 |
| MS.gene050689 | MS.gene54669 | 0.80779 | 4.26E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene54669 | 0.816837 | 4.50E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene54669 | 0.841225 | 5.41E-58 | -1.69E-46 |
| MS.gene05157 | MS.gene54669 | 0.844713 | 6.37E-59 | -1.69E-46 |
| MS.gene051719 | MS.gene54669 | 0.803472 | 3.43E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene54669 | 0.828866 | 7.08E-55 | -1.69E-46 |
| MS.gene052133 | MS.gene54669 | 0.818109 | 2.33E-52 | -1.69E-46 |
| MS.gene052239 | MS.gene54669 | -0.806427 | 8.27E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene54669 | 0.81262 | 3.87E-51 | -1.69E-46 |
| MS.gene053079 | MS.gene54669 | 0.810091 | 1.37E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene54669 | 0.817899 | 2.60E-52 | -1.69E-46 |
| MS.gene053171 | MS.gene54669 | 0.811839 | 5.73E-51 | -1.69E-46 |
| MS.gene053581 | MS.gene54669 | 0.843629 | 1.25E-58 | -1.69E-46 |
| MS.gene054554 | MS.gene54669 | 0.805497 | 1.30E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene54669 | 0.822622 | 2.15E-53 | -1.69E-46 |
| MS.gene055465 | MS.gene54669 | 0.829711 | 4.42E-55 | -1.69E-46 |
| MS.gene055466 | MS.gene54669 | 0.811728 | 6.06E-51 | -1.69E-46 |
| MS.gene055469 | MS.gene54669 | 0.804806 | 1.81E-49 | -1.69E-46 |
| MS.gene055580 | MS.gene54669 | -0.807325 | 5.34E-50 | -1.69E-46 |
| MS.gene055890 | MS.gene54669 | 0.806347 | 8.60E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene54669 | 0.80047 | 1.42E-48 | -1.69E-46 |
| MS.gene056507 | MS.gene54669 | 0.807323 | 5.35E-50 | -1.69E-46 |
| MS.gene060194 | MS.gene54669 | 0.81064 | 1.04E-50 | -1.69E-46 |
| MS.gene060519 | MS.gene54669 | 0.808701 | 2.72E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene54669 | 0.847573 | 1.06E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene040150 | MS.gene54669 | PPI |
| MS.gene54669 | MS.gene93781 | PPI |
| MS.gene62619 | MS.gene54669 | PPI |
| MS.gene95891 | MS.gene54669 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54669.t1 | MTR_6g007770 | 95.017 | 602 | 30 | 0 | 2 | 603 | 20 | 621 | 0.0 | 1193 |
| MS.gene54669.t1 | MTR_6g007767 | 83.416 | 603 | 100 | 0 | 1 | 603 | 41 | 643 | 0.0 | 1078 |
| MS.gene54669.t1 | MTR_6g007763 | 80.496 | 605 | 115 | 2 | 2 | 603 | 40 | 644 | 0.0 | 1018 |
| MS.gene54669.t1 | MTR_6g007767 | 83.365 | 529 | 88 | 0 | 1 | 529 | 41 | 569 | 0.0 | 941 |
| MS.gene54669.t1 | MTR_6g007767 | 83.268 | 508 | 85 | 0 | 96 | 603 | 1 | 508 | 0.0 | 903 |
| MS.gene54669.t1 | MTR_8g106800 | 64.286 | 602 | 208 | 2 | 2 | 600 | 32 | 629 | 0.0 | 785 |
| MS.gene54669.t1 | MTR_6g007767 | 83.421 | 380 | 63 | 0 | 1 | 380 | 41 | 420 | 0.0 | 690 |
| MS.gene54669.t1 | MTR_6g007767 | 82.940 | 381 | 65 | 0 | 1 | 381 | 41 | 421 | 0.0 | 688 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54669.t1 | AT3G01420 | 74.172 | 604 | 155 | 1 | 1 | 603 | 36 | 639 | 0.0 | 943 |
| MS.gene54669.t1 | AT1G73680 | 65.109 | 599 | 207 | 2 | 2 | 600 | 32 | 628 | 0.0 | 808 |
| MS.gene54669.t1 | AT1G73680 | 63.816 | 608 | 209 | 4 | 2 | 600 | 32 | 637 | 0.0 | 795 |
| MS.gene54669.t1 | AT1G73680 | 66.216 | 518 | 174 | 1 | 83 | 600 | 3 | 519 | 0.0 | 712 |
| MS.gene54669.t1 | AT1G73680 | 66.947 | 475 | 156 | 1 | 126 | 600 | 1 | 474 | 0.0 | 663 |
Find 148 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTACTCCATCTTCATTT+TGG | 0.160377 | 6.1:-3582562 | None:intergenic |
| TTTATTTAGGTATGGATTAT+TGG | 0.165781 | 6.1:+3583253 | MS.gene54669:intron |
| TCTCTTGGGCCTATTGTATT+TGG | 0.181493 | 6.1:+3574944 | MS.gene54669:CDS |
| CTTCAAGTGCTTTCTCTGTT+TGG | 0.185040 | 6.1:+3585045 | MS.gene54669:CDS |
| CATTGTGTTCTTGAATAAAA+AGG | 0.197269 | 6.1:-3582634 | None:intergenic |
| TATTGATACCTATTTCAAAA+TGG | 0.222014 | 6.1:+3584371 | MS.gene54669:CDS |
| GGCTGGTGTCTCAACTTTGC+AGG | 0.228515 | 6.1:+3582610 | MS.gene54669:CDS |
| GGAATTGGATTGTCTTTGTT+TGG | 0.229305 | 6.1:-3585077 | None:intergenic |
| TGCAAGAGCATTAGTGTCTA+TGG | 0.246157 | 6.1:+3584070 | MS.gene54669:CDS |
| GAATTGGATTGTCTTTGTTT+GGG | 0.253532 | 6.1:-3585076 | None:intergenic |
| GTTCTATATGGATAATCATT+AGG | 0.263833 | 6.1:-3575041 | None:intergenic |
| TTATTTAGGTATGGATTATT+GGG | 0.264621 | 6.1:+3583254 | MS.gene54669:intron |
| TTCAAGTGCTTTCTCTGTTT+GGG | 0.278891 | 6.1:+3585046 | MS.gene54669:CDS |
| TCTTCTGAATTGGTTATATC+TGG | 0.284000 | 6.1:-3584341 | None:intergenic |
| AATTCTTCAGTTAGAGAGTA+TGG | 0.287850 | 6.1:-3583365 | None:intergenic |
| GAAGATGGAGTAGCAATTTC+AGG | 0.292686 | 6.1:+3582569 | MS.gene54669:CDS |
| TAATAAATGATGCAGTTTAT+AGG | 0.295800 | 6.1:+3584299 | MS.gene54669:intron |
| TGAGGAGACATACACCAAAA+AGG | 0.300584 | 6.1:+3584938 | MS.gene54669:CDS |
| GCACCGTTTACCTGTTCTCT+TGG | 0.305249 | 6.1:+3574929 | MS.gene54669:CDS |
| AAAACTGACACTTTGCTTGC+AGG | 0.315806 | 6.1:+3582881 | MS.gene54669:CDS |
| TTTCCATCAGCAGTTCTATA+TGG | 0.317935 | 6.1:-3575053 | None:intergenic |
| AACCACTTCTCTGTCATTCC+TGG | 0.318503 | 6.1:-3585017 | None:intergenic |
| ATGGATAGTTTCCAAGTGTT+AGG | 0.324477 | 6.1:-3584112 | None:intergenic |
| ATAATAATGCTCTTCTGAAT+TGG | 0.331174 | 6.1:-3584351 | None:intergenic |
| CATCTATGTTCTGTGGTACT+AGG | 0.336758 | 6.1:-3584148 | None:intergenic |
| AATAAATGATGCAGTTTATA+GGG | 0.338380 | 6.1:+3584300 | MS.gene54669:intron |
| GGTGGTGGCCACAAAACTTT+TGG | 0.347715 | 6.1:+3575389 | MS.gene54669:CDS |
| TTGCAGGCATGCGTGGAAAT+TGG | 0.352398 | 6.1:+3582897 | MS.gene54669:CDS |
| ATACGAAGATAAAGTGGAAT+TGG | 0.356112 | 6.1:-3585092 | None:intergenic |
| GACAAACAGCTGTAGGAGTT+AGG | 0.366038 | 6.1:+3575012 | MS.gene54669:CDS |
| AAGAAATTCAAGGACACGTT+TGG | 0.370488 | 6.1:+3583278 | MS.gene54669:CDS |
| GAACACAACTGAGAGCTTAA+AGG | 0.370793 | 6.1:+3584974 | MS.gene54669:CDS |
| TTCTATATGGATAATCATTA+GGG | 0.374278 | 6.1:-3575040 | None:intergenic |
| TCTATGGGTCATCAAACTTC+TGG | 0.375181 | 6.1:+3584086 | MS.gene54669:CDS |
| CAGGTGATGTTCGTAATAGT+TGG | 0.375562 | 6.1:+3582588 | MS.gene54669:CDS |
| CTTAGTCAAGTTAATTAACT+AGG | 0.376425 | 6.1:-3585116 | None:intergenic |
| CCATTGACAAGCTTGGAATA+TGG | 0.378143 | 6.1:+3574907 | MS.gene54669:CDS |
| TTGGCATACTCTTTGATTAG+TGG | 0.381268 | 6.1:-3583476 | None:intergenic |
| AGGGATGGAAGTGTGATATA+TGG | 0.381936 | 6.1:+3582461 | MS.gene54669:intron |
| TTCAATTTATGATACATGAT+TGG | 0.382105 | 6.1:+3575469 | MS.gene54669:CDS |
| GAAGGAGGCTAGAGGCTGAT+AGG | 0.395767 | 6.1:+3584895 | MS.gene54669:intron |
| AAAGTATTGGAAGAGGTATA+TGG | 0.396188 | 6.1:+3584424 | MS.gene54669:CDS |
| ACATGATTGGATAGACCATT+TGG | 0.400463 | 6.1:+3575482 | MS.gene54669:CDS |
| GTGGCCACCACCATAGGGTC+TGG | 0.404951 | 6.1:-3575378 | None:intergenic |
| CAAAGATTCACACTATAGAT+TGG | 0.406140 | 6.1:+3582843 | MS.gene54669:CDS |
| GGAAGTCAAGGGTCTTTCAT+TGG | 0.407694 | 6.1:+3575104 | MS.gene54669:CDS |
| TCTTTACCGCCATGCTAGAT+TGG | 0.408691 | 6.1:+3582802 | MS.gene54669:CDS |
| CACCGTTTACCTGTTCTCTT+GGG | 0.408694 | 6.1:+3574930 | MS.gene54669:CDS |
| AAGAATTTGTCAGTGTCTAT+AGG | 0.411562 | 6.1:+3583381 | MS.gene54669:CDS |
| ATTGATACCTATTTCAAAAT+GGG | 0.416616 | 6.1:+3584372 | MS.gene54669:CDS |
| CATGGCAGAGAAGAAGATAA+AGG | 0.425013 | 6.1:+3584483 | MS.gene54669:CDS |
| TCTCTCAAATGCAAAGAATC+AGG | 0.426183 | 6.1:-3583419 | None:intergenic |
| GGAAGATTTGACAGATGATA+AGG | 0.428815 | 6.1:+3584393 | MS.gene54669:CDS |
| CATGTTGGTGACGCTATCTT+AGG | 0.437122 | 6.1:+3583302 | MS.gene54669:CDS |
| AGGTGATGTTCGTAATAGTT+GGG | 0.441309 | 6.1:+3582589 | MS.gene54669:CDS |
| CGTTGAAGAGGTTGTATTGT+TGG | 0.442142 | 6.1:-3574986 | None:intergenic |
| TACAATAGGCCCAAGAGAAC+AGG | 0.445679 | 6.1:-3574939 | None:intergenic |
| CCATTTGGAGGACACTAATC+AGG | 0.454160 | 6.1:+3575497 | MS.gene54669:CDS |
| CGCTATCTTAGGTGGATTGG+TGG | 0.458715 | 6.1:+3583313 | MS.gene54669:CDS |
| ATTCCTATGAATGATCTGAT+TGG | 0.459502 | 6.1:+3584011 | MS.gene54669:CDS |
| TTCCAGCACTTTCATTGAAA+GGG | 0.464817 | 6.1:-3575085 | None:intergenic |
| ATTCACTCCATTGACAAGCT+TGG | 0.465544 | 6.1:+3574900 | MS.gene54669:CDS |
| CTTCCAGCACTTTCATTGAA+AGG | 0.467301 | 6.1:-3575086 | None:intergenic |
| GGTTGTATTGTTGGTGAAGA+TGG | 0.472509 | 6.1:-3574977 | None:intergenic |
| TAAGGAAGTAATCAAAGTAT+TGG | 0.476469 | 6.1:+3584411 | MS.gene54669:CDS |
| GTCTAATGGCCAAATACAAT+AGG | 0.476494 | 6.1:-3574953 | None:intergenic |
| GACCCTTTCAATGAAAGTGC+TGG | 0.479861 | 6.1:+3575083 | MS.gene54669:CDS |
| CTAGTACCACAGAACATAGA+TGG | 0.488409 | 6.1:+3584149 | MS.gene54669:CDS |
| ACTTTATTAGAAGGAATATC+CGG | 0.488477 | 6.1:+3582763 | MS.gene54669:intron |
| AGTCCAATCAGATCATTCAT+AGG | 0.489257 | 6.1:-3584014 | None:intergenic |
| TATTCCTTGTCATGGCATCT+AGG | 0.490057 | 6.1:+3584536 | MS.gene54669:CDS |
| CCATATTCCAAGCTTGTCAA+TGG | 0.491674 | 6.1:-3574907 | None:intergenic |
| TGGATAGTTTCCAAGTGTTA+GGG | 0.492607 | 6.1:-3584111 | None:intergenic |
| ACTTCTGGTGCCCTAACACT+TGG | 0.493264 | 6.1:+3584101 | MS.gene54669:CDS |
| ATGGCAGAGAAGAAGATAAA+GGG | 0.494420 | 6.1:+3584484 | MS.gene54669:CDS |
| ACTAGGTTTCTGAGAAATGA+TGG | 0.495166 | 6.1:-3584131 | None:intergenic |
| AATTGGATTGTCTTTGTTTG+GGG | 0.496370 | 6.1:-3585075 | None:intergenic |
| ACCTTGTCCTTCTGATCCAC+AGG | 0.498358 | 6.1:-3575140 | None:intergenic |
| AGATCTTCATCTTCCAAGTC+CGG | 0.500138 | 6.1:-3582782 | None:intergenic |
| ACCCTAATCCAAAATGAAGA+TGG | 0.502805 | 6.1:+3582554 | MS.gene54669:CDS |
| TCAATGTGTTAGCAGCTGCT+TGG | 0.503391 | 6.1:+3575445 | MS.gene54669:CDS |
| GGCCCAAGAGAACAGGTAAA+CGG | 0.506089 | 6.1:-3574932 | None:intergenic |
| TGAATTGTTTCCCATTGCCC+TGG | 0.506808 | 6.1:-3575425 | None:intergenic |
| CTGTTTGTCCAACGTTGAAG+AGG | 0.509107 | 6.1:-3574998 | None:intergenic |
| AATGAAAGTGCTGGAAGTCA+AGG | 0.509134 | 6.1:+3575092 | MS.gene54669:CDS |
| CCTGATTAGTGTCCTCCAAA+TGG | 0.509333 | 6.1:-3575497 | None:intergenic |
| TTAGAAGGAATATCCGGACT+TGG | 0.511639 | 6.1:+3582769 | MS.gene54669:intron |
| ACAAACAGCTGTAGGAGTTA+GGG | 0.512018 | 6.1:+3575013 | MS.gene54669:CDS |
| CTAGGAATACGAAGATAAAG+TGG | 0.513359 | 6.1:-3585098 | None:intergenic |
| ATTATTGGGGAAGAAATTCA+AGG | 0.514441 | 6.1:+3583268 | MS.gene54669:CDS |
| GTTGTTGAAGCCAGACCCTA+TGG | 0.516727 | 6.1:+3575368 | MS.gene54669:intron |
| GCATACTCTTTGATTAGTGG+TGG | 0.519980 | 6.1:-3583473 | None:intergenic |
| GTGATTGATCGTCACCATCC+AGG | 0.520313 | 6.1:+3584999 | MS.gene54669:CDS |
| AAGACAAAGGAAATTCCAAC+GGG | 0.522014 | 6.1:+3575720 | MS.gene54669:CDS |
| AGTAATCAAAGTATTGGAAG+AGG | 0.523415 | 6.1:+3584417 | MS.gene54669:CDS |
| GCAAGAGCATTAGTGTCTAT+GGG | 0.528313 | 6.1:+3584071 | MS.gene54669:CDS |
| TGACGCTATCTTAGGTGGAT+TGG | 0.529693 | 6.1:+3583310 | MS.gene54669:CDS |
| ATGAATAAAGCAGATAATCA+TGG | 0.533460 | 6.1:+3583338 | MS.gene54669:CDS |
| TGCAAATCCTATTGATGACA+AGG | 0.535889 | 6.1:-3584051 | None:intergenic |
| TATCCATATAGAACTGCTGA+TGG | 0.540566 | 6.1:+3575050 | MS.gene54669:CDS |
| TATTCTTCCTGTGGATCAGA+AGG | 0.548821 | 6.1:+3575133 | MS.gene54669:CDS |
| CAATACAACCTCTTCAACGT+TGG | 0.548944 | 6.1:+3574990 | MS.gene54669:CDS |
| TGCTGTTTGTGATGCTCTCA+AGG | 0.550296 | 6.1:+3582655 | MS.gene54669:CDS |
| TTGGTGAAGATGGCGTCTAA+TGG | 0.550915 | 6.1:-3574967 | None:intergenic |
| AGTGTGAGGACTTTCAAAGA+TGG | 0.553993 | 6.1:+3582506 | MS.gene54669:CDS |
| AATGATCTGATTGGACTACC+AGG | 0.562984 | 6.1:+3584020 | MS.gene54669:CDS |
| ACTTTGCTTGCAGGCATGCG+TGG | 0.565616 | 6.1:+3582890 | MS.gene54669:CDS |
| GTGTGAGGACTTTCAAAGAT+GGG | 0.567956 | 6.1:+3582507 | MS.gene54669:CDS |
| AGAGATATATCTGCCACCCC+AGG | 0.569935 | 6.1:+3583437 | MS.gene54669:CDS |
| ATTCAAGTTCTTGAAGACAA+AGG | 0.574896 | 6.1:+3575707 | MS.gene54669:CDS |
| ATTCTTACCACCAAGGTGTA+CGG | 0.577040 | 6.1:-3575776 | None:intergenic |
| TGATTGGATAGACCATTTGG+AGG | 0.577305 | 6.1:+3575485 | MS.gene54669:CDS |
| AAGGACACGTTTGGACATGT+TGG | 0.577672 | 6.1:+3583287 | MS.gene54669:CDS |
| TGGAAGAAATATTCTTCCTG+TGG | 0.579019 | 6.1:+3575124 | MS.gene54669:CDS |
| GTTGGTGACGCTATCTTAGG+TGG | 0.581025 | 6.1:+3583305 | MS.gene54669:CDS |
| CAGTTTATAGGGATAGAGAG+AGG | 0.581334 | 6.1:+3584311 | MS.gene54669:intron |
| GATGTTCGTAATAGTTGGGC+TGG | 0.581972 | 6.1:+3582593 | MS.gene54669:CDS |
| TTGATCTGATAGAAACCCGT+TGG | 0.590712 | 6.1:-3575735 | None:intergenic |
| TCTGTGCCATCTATGTTCTG+TGG | 0.595744 | 6.1:-3584155 | None:intergenic |
| CATTGGCTTGCAACTTCACG+TGG | 0.599180 | 6.1:-3575672 | None:intergenic |
| CAAACATCCGTACACCTTGG+TGG | 0.599441 | 6.1:+3575769 | MS.gene54669:CDS |
| TATTTAGGTATGGATTATTG+GGG | 0.600656 | 6.1:+3583255 | MS.gene54669:intron |
| ACTTCTCTGTCATTCCTGGA+TGG | 0.601358 | 6.1:-3585013 | None:intergenic |
| GGTATATGGCAATGATGTTG+AGG | 0.601911 | 6.1:+3584438 | MS.gene54669:CDS |
| TGATACACTAGTGGGTCTCA+TGG | 0.602913 | 6.1:+3584465 | MS.gene54669:CDS |
| GAAGACAAAGGAAATTCCAA+CGG | 0.603567 | 6.1:+3575719 | MS.gene54669:CDS |
| CACAGAAAGATCTGATCATG+TGG | 0.608280 | 6.1:+3584172 | MS.gene54669:CDS |
| ATGAAAGTGCTGGAAGTCAA+GGG | 0.608733 | 6.1:+3575093 | MS.gene54669:CDS |
| GAGGAGCTTGATACACTAGT+GGG | 0.609778 | 6.1:+3584457 | MS.gene54669:CDS |
| ATGCAAACATCCGTACACCT+TGG | 0.610700 | 6.1:+3575766 | MS.gene54669:CDS |
| GCTATCTTAGGTGGATTGGT+GGG | 0.616010 | 6.1:+3583314 | MS.gene54669:CDS |
| TGCACTTTGAAGGAGGCTAG+AGG | 0.616682 | 6.1:+3584887 | MS.gene54669:intron |
| TCAAATGCAAAGAATCAGGT+AGG | 0.617720 | 6.1:-3583415 | None:intergenic |
| CTGAAGTCACCAATCTAGCA+TGG | 0.617787 | 6.1:-3582811 | None:intergenic |
| GAAGCCAGACCCTATGGTGG+TGG | 0.622175 | 6.1:+3575374 | MS.gene54669:CDS |
| ATTGGATTGTCTTTGTTTGG+GGG | 0.624854 | 6.1:-3585074 | None:intergenic |
| TTTCACAAGCAACTTCAATG+AGG | 0.625396 | 6.1:+3584920 | MS.gene54669:CDS |
| TCCTGTGGATCAGAAGGACA+AGG | 0.625807 | 6.1:+3575139 | MS.gene54669:CDS |
| TTTACCTAGATGCCATGACA+AGG | 0.626815 | 6.1:-3584540 | None:intergenic |
| TGAGGAGCTTGATACACTAG+TGG | 0.630078 | 6.1:+3584456 | MS.gene54669:CDS |
| GGTTTCTATCAGATCAAGAG+TGG | 0.632501 | 6.1:+3575741 | MS.gene54669:CDS |
| AACGTTGGACAAACAGCTGT+AGG | 0.633142 | 6.1:+3575005 | MS.gene54669:CDS |
| ATCCAGGAATGACAGAGAAG+TGG | 0.637997 | 6.1:+3585015 | MS.gene54669:CDS |
| GGAAAATATTCTTACCACCA+AGG | 0.641196 | 6.1:-3575783 | None:intergenic |
| AAGATCTGATCATGTGGACA+TGG | 0.657118 | 6.1:+3584178 | MS.gene54669:CDS |
| GTTGAAGCCAGACCCTATGG+TGG | 0.716852 | 6.1:+3575371 | MS.gene54669:CDS |
| TCACACTATAGATTGGACTG+TGG | 0.742224 | 6.1:+3582850 | MS.gene54669:CDS |
| AAGTCACCAATCTAGCATGG+CGG | 0.759736 | 6.1:-3582808 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 3567842 | 3585124 | 3567842 | ID=MS.gene54669 |
| chr6.1 | mRNA | 3567842 | 3585124 | 3567842 | ID=MS.gene54669.t1;Parent=MS.gene54669 |
| chr6.1 | exon | 3567842 | 3567844 | 3567842 | ID=MS.gene54669.t1.exon1;Parent=MS.gene54669.t1 |
| chr6.1 | CDS | 3567842 | 3567844 | 3567842 | ID=cds.MS.gene54669.t1;Parent=MS.gene54669.t1 |
| chr6.1 | exon | 3574897 | 3575160 | 3574897 | ID=MS.gene54669.t1.exon2;Parent=MS.gene54669.t1 |
| chr6.1 | CDS | 3574897 | 3575160 | 3574897 | ID=cds.MS.gene54669.t1;Parent=MS.gene54669.t1 |
| chr6.1 | exon | 3575369 | 3575518 | 3575369 | ID=MS.gene54669.t1.exon3;Parent=MS.gene54669.t1 |
| chr6.1 | CDS | 3575369 | 3575518 | 3575369 | ID=cds.MS.gene54669.t1;Parent=MS.gene54669.t1 |
| chr6.1 | exon | 3575657 | 3575790 | 3575657 | ID=MS.gene54669.t1.exon4;Parent=MS.gene54669.t1 |
| chr6.1 | CDS | 3575657 | 3575790 | 3575657 | ID=cds.MS.gene54669.t1;Parent=MS.gene54669.t1 |
| chr6.1 | exon | 3582463 | 3582676 | 3582463 | ID=MS.gene54669.t1.exon5;Parent=MS.gene54669.t1 |
| chr6.1 | CDS | 3582463 | 3582676 | 3582463 | ID=cds.MS.gene54669.t1;Parent=MS.gene54669.t1 |
| chr6.1 | exon | 3582773 | 3582918 | 3582773 | ID=MS.gene54669.t1.exon6;Parent=MS.gene54669.t1 |
| chr6.1 | CDS | 3582773 | 3582918 | 3582773 | ID=cds.MS.gene54669.t1;Parent=MS.gene54669.t1 |
| chr6.1 | exon | 3583262 | 3583489 | 3583262 | ID=MS.gene54669.t1.exon7;Parent=MS.gene54669.t1 |
| chr6.1 | CDS | 3583262 | 3583489 | 3583262 | ID=cds.MS.gene54669.t1;Parent=MS.gene54669.t1 |
| chr6.1 | exon | 3584010 | 3584212 | 3584010 | ID=MS.gene54669.t1.exon8;Parent=MS.gene54669.t1 |
| chr6.1 | CDS | 3584010 | 3584212 | 3584010 | ID=cds.MS.gene54669.t1;Parent=MS.gene54669.t1 |
| chr6.1 | exon | 3584314 | 3584557 | 3584314 | ID=MS.gene54669.t1.exon9;Parent=MS.gene54669.t1 |
| chr6.1 | CDS | 3584314 | 3584557 | 3584314 | ID=cds.MS.gene54669.t1;Parent=MS.gene54669.t1 |
| chr6.1 | exon | 3584899 | 3585124 | 3584899 | ID=MS.gene54669.t1.exon10;Parent=MS.gene54669.t1 |
| chr6.1 | CDS | 3584899 | 3585124 | 3584899 | ID=cds.MS.gene54669.t1;Parent=MS.gene54669.t1 |
| Gene Sequence |
| Protein sequence |
