Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55208.t1 | XP_003613746.1 | 89.7 | 475 | 32 | 4 | 1 | 468 | 1 | 465 | 6.30E-227 | 796.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55208.t1 | Q9SWI1 | 34.1 | 446 | 215 | 18 | 21 | 443 | 31 | 420 | 1.0e-31 | 139.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55208.t1 | G7KDX6 | 89.7 | 475 | 32 | 4 | 1 | 468 | 1 | 465 | 4.5e-227 | 796.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050122 | MS.gene55208 | 0.810453 | 1.14E-50 | -1.69E-46 |
| MS.gene053169 | MS.gene55208 | 0.800453 | 1.43E-48 | -1.69E-46 |
| MS.gene053813 | MS.gene55208 | 0.83021 | 3.34E-55 | -1.69E-46 |
| MS.gene054010 | MS.gene55208 | 0.839047 | 2.00E-57 | -1.69E-46 |
| MS.gene054011 | MS.gene55208 | 0.83221 | 1.08E-55 | -1.69E-46 |
| MS.gene054012 | MS.gene55208 | 0.831764 | 1.39E-55 | -1.69E-46 |
| MS.gene054013 | MS.gene55208 | 0.832135 | 1.12E-55 | -1.69E-46 |
| MS.gene054183 | MS.gene55208 | 0.826614 | 2.46E-54 | -1.69E-46 |
| MS.gene054556 | MS.gene55208 | 0.805821 | 1.11E-49 | -1.69E-46 |
| MS.gene055604 | MS.gene55208 | 0.816917 | 4.32E-52 | -1.69E-46 |
| MS.gene055909 | MS.gene55208 | 0.811584 | 6.51E-51 | -1.69E-46 |
| MS.gene055911 | MS.gene55208 | 0.824284 | 8.77E-54 | -1.69E-46 |
| MS.gene056902 | MS.gene55208 | 0.816432 | 5.55E-52 | -1.69E-46 |
| MS.gene057449 | MS.gene55208 | 0.804388 | 2.21E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene55208 | 0.81139 | 7.17E-51 | -1.69E-46 |
| MS.gene057823 | MS.gene55208 | 0.803571 | 3.27E-49 | -1.69E-46 |
| MS.gene058949 | MS.gene55208 | 0.805703 | 1.17E-49 | -1.69E-46 |
| MS.gene058995 | MS.gene55208 | 0.81749 | 3.21E-52 | -1.69E-46 |
| MS.gene059294 | MS.gene55208 | 0.810147 | 1.33E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene55208 | 0.823668 | 1.22E-53 | -1.69E-46 |
| MS.gene059807 | MS.gene55208 | 0.807232 | 5.59E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55208.t1 | MTR_5g040340 | 91.368 | 475 | 24 | 4 | 1 | 468 | 1 | 465 | 0.0 | 864 |
| MS.gene55208.t1 | MTR_8g055860 | 46.667 | 510 | 167 | 24 | 17 | 468 | 29 | 491 | 2.87e-102 | 314 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55208.t1 | AT2G02950 | 36.585 | 410 | 174 | 20 | 55 | 443 | 76 | 420 | 8.18e-47 | 168 |
| MS.gene55208.t1 | AT1G14280 | 33.967 | 421 | 178 | 22 | 52 | 439 | 63 | 416 | 6.91e-43 | 157 |
Find 71 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAAGAAGATGGAGAAAT+TGG | 0.158218 | 5.2:-30314713 | MS.gene55208:CDS |
| GAATTAAACGATGTTCTTAT+TGG | 0.158853 | 5.2:+30313762 | None:intergenic |
| TCACTTGGTGCATAGAAATT+TGG | 0.171246 | 5.2:+30313882 | None:intergenic |
| GCCTCAGATGACAAGGTTTA+AGG | 0.196735 | 5.2:-30313592 | MS.gene55208:CDS |
| TTTCAAGTACTTGAGTTTAT+TGG | 0.250362 | 5.2:+30314622 | None:intergenic |
| TGCACTTTCTATTCTCTTGT+TGG | 0.253513 | 5.2:+30314597 | None:intergenic |
| TTGCATCTTTCATCTAATAT+TGG | 0.263596 | 5.2:+30314146 | None:intergenic |
| CTTGAGTTTATTGGCATCTA+AGG | 0.270047 | 5.2:+30314631 | None:intergenic |
| TTCCTTTCTGTTGCTGATAA+AGG | 0.278838 | 5.2:+30314757 | None:intergenic |
| TCCTTTCTGTTGCTGATAAA+GGG | 0.296457 | 5.2:+30314758 | None:intergenic |
| AGGTTTAAGGTGGAAAGTTT+TGG | 0.354957 | 5.2:-30313579 | MS.gene55208:CDS |
| AAGAGTCTTCTTGCTTCTCT+TGG | 0.359154 | 5.2:-30314440 | MS.gene55208:CDS |
| AGGAAAACATTGGAAGTGTT+TGG | 0.359214 | 5.2:-30314173 | MS.gene55208:CDS |
| AGAAAGTGCAAAGTTCAATA+TGG | 0.368278 | 5.2:-30314584 | MS.gene55208:CDS |
| TCAACATCACATGTTGCTTC+TGG | 0.368292 | 5.2:-30313915 | MS.gene55208:CDS |
| CATTCAATGCTTGCTTCACT+TGG | 0.371898 | 5.2:+30313867 | None:intergenic |
| AGAAATGAACAACATGGTTA+TGG | 0.378020 | 5.2:-30313552 | MS.gene55208:CDS |
| GTTATGGAAAACCTCCTCTT+AGG | 0.383306 | 5.2:-30313536 | MS.gene55208:CDS |
| GCGGCGTCCGGGAAAATTGT+TGG | 0.404010 | 5.2:-30313700 | MS.gene55208:CDS |
| AGAGATGCCGAGGCGGCGTC+CGG | 0.408283 | 5.2:-30313712 | MS.gene55208:CDS |
| CGGCGTCCGGGAAAATTGTT+GGG | 0.423128 | 5.2:-30313699 | MS.gene55208:CDS |
| TATGAACTTGGTTATGAACT+TGG | 0.432001 | 5.2:+30314465 | None:intergenic |
| CAGAAAGCTGTTGATGTTGC+TGG | 0.436890 | 5.2:-30313666 | MS.gene55208:CDS |
| CTTGATTCTGAGCCAACACT+TGG | 0.447581 | 5.2:+30314557 | None:intergenic |
| CTTCTTCTTTCTTTACTCCA+AGG | 0.457657 | 5.2:+30314726 | None:intergenic |
| AGTCAATAAGCTTTGATATG+AGG | 0.461128 | 5.2:-30314124 | MS.gene55208:CDS |
| TTCAACAAAAGTGCAGTTCA+AGG | 0.462298 | 5.2:-30314353 | MS.gene55208:CDS |
| AAGGTTCAGTAGTAACTATA+AGG | 0.462753 | 5.2:-30313788 | MS.gene55208:CDS |
| TTTGAGATTGAAAGCTTCAC+TGG | 0.464240 | 5.2:-30313969 | MS.gene55208:CDS |
| GAAGACTCTTTCTATGAACT+TGG | 0.474532 | 5.2:+30314453 | None:intergenic |
| GAGATGCCGAGGCGGCGTCC+GGG | 0.478167 | 5.2:-30313711 | MS.gene55208:CDS |
| TTCGAAGCAGCTTCCCAAGA+TGG | 0.484347 | 5.2:+30314092 | None:intergenic |
| GCATCTAAGGTAGCAAGTCT+TGG | 0.492321 | 5.2:+30314644 | None:intergenic |
| CTTGAACAACAAGGAAGTAA+AGG | 0.492569 | 5.2:-30314804 | MS.gene55208:CDS |
| TTCTGTTGCTGATAAAGGGG+TGG | 0.493694 | 5.2:+30314762 | None:intergenic |
| TTCCGCTGCAGCACGAGTCT+CGG | 0.494266 | 5.2:+30314259 | None:intergenic |
| GTTTCAGATCATGAAGATCA+AGG | 0.495758 | 5.2:-30313807 | MS.gene55208:CDS |
| CAAGTGAAGCAAGCATTGAA+TGG | 0.508457 | 5.2:-30313866 | MS.gene55208:CDS |
| GGGTGGATTGAATCAGCAAA+AGG | 0.523505 | 5.2:+30314779 | None:intergenic |
| ACATCGTTTAATTCATCGAA+TGG | 0.528036 | 5.2:-30313753 | MS.gene55208:CDS |
| TTCTTTACTCCAAGGTGAAG+AGG | 0.529025 | 5.2:+30314734 | None:intergenic |
| CCTTTCTGTTGCTGATAAAG+GGG | 0.530407 | 5.2:+30314759 | None:intergenic |
| GGAGTAAAGAAAGAAGAAGA+TGG | 0.538350 | 5.2:-30314722 | MS.gene55208:CDS |
| ACCTTAAACCTTGTCATCTG+AGG | 0.538940 | 5.2:+30313591 | None:intergenic |
| AACCGAGACTCGTGCTGCAG+CGG | 0.552008 | 5.2:-30314261 | MS.gene55208:CDS |
| TTCAACAAGTAGAGAATCCA+AGG | 0.552480 | 5.2:-30314193 | MS.gene55208:CDS |
| CCCCTTTATCAGCAACAGAA+AGG | 0.557673 | 5.2:-30314759 | MS.gene55208:CDS |
| AGAGAATCCAAGGAAAACAT+TGG | 0.562983 | 5.2:-30314183 | MS.gene55208:CDS |
| GGTGAATTTGATCTCCTAAG+AGG | 0.568136 | 5.2:+30313522 | None:intergenic |
| GTTATTCTGAGAGGTGAAAG+TGG | 0.569101 | 5.2:+30314862 | None:intergenic |
| GTTATTGTTGTTATTCTGAG+AGG | 0.577463 | 5.2:+30314853 | None:intergenic |
| CAGGTTGTAAAAGTGCACTT+TGG | 0.581251 | 5.2:+30314525 | None:intergenic |
| CAATATGGAACTCCAAGTGT+TGG | 0.581850 | 5.2:-30314569 | MS.gene55208:CDS |
| GAATTTGATCTCCTAAGAGG+AGG | 0.592977 | 5.2:+30313525 | None:intergenic |
| CTCTTCATACTTGAACAACA+AGG | 0.600465 | 5.2:-30314813 | MS.gene55208:CDS |
| AGAAAGGAACCTCTTCACCT+TGG | 0.604048 | 5.2:-30314743 | MS.gene55208:CDS |
| AAATGTTGCCTCAGATGACA+AGG | 0.605171 | 5.2:-30313599 | MS.gene55208:CDS |
| TCAGATGACAAGGTTTAAGG+TGG | 0.630245 | 5.2:-30313589 | MS.gene55208:CDS |
| AAATCAACAAAGAGATGCCG+AGG | 0.636605 | 5.2:-30313722 | MS.gene55208:CDS |
| GGTGCAAGAAATGAACAACA+TGG | 0.655080 | 5.2:-30313558 | MS.gene55208:CDS |
| TCAACAAAGAGATGCCGAGG+CGG | 0.670252 | 5.2:-30313719 | MS.gene55208:CDS |
| AACAACAATAACCTCCGTGG+TGG | 0.687252 | 5.2:-30314842 | MS.gene55208:CDS |
| GTTGATGTAAGTGATCATGC+AGG | 0.688347 | 5.2:-30314386 | MS.gene55208:CDS |
| AGGAGATCAAATTCACCACA+TGG | 0.692006 | 5.2:-30313516 | MS.gene55208:CDS |
| ACAACAACAAATGAGAAACA+TGG | 0.697642 | 5.2:-30313633 | MS.gene55208:CDS |
| AGCAAGCATTGAATGGAGTG+TGG | 0.726329 | 5.2:-30313859 | MS.gene55208:CDS |
| ATGAAGAGAAAGAACCACCA+CGG | 0.734637 | 5.2:+30314828 | None:intergenic |
| TACAAAAGTTGTGCACCATG+TGG | 0.736641 | 5.2:+30313501 | None:intergenic |
| AATAACAACAATAACCTCCG+TGG | 0.749739 | 5.2:-30314845 | MS.gene55208:CDS |
| AGTGGTTGCTGAGATAACCA+TGG | 0.758373 | 5.2:+30314880 | None:intergenic |
| AAGAGAAAGAACCACCACGG+AGG | 0.793634 | 5.2:+30314831 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GAATTAAACGATGTTCTTAT+TGG | + | chr5.2:30314613-30314632 | None:intergenic | 25.0% |
| ! | TGTTCTTGATAAAAATGAGT+TGG | + | chr5.2:30314437-30314456 | None:intergenic | 25.0% |
| ! | TTGCATCTTTCATCTAATAT+TGG | + | chr5.2:30314229-30314248 | None:intergenic | 25.0% |
| !! | ATGTTTGAAGAATTTTTCTG+AGG | + | chr5.2:30314053-30314072 | None:intergenic | 25.0% |
| !! | TTTCAAGTACTTGAGTTTAT+TGG | + | chr5.2:30313753-30313772 | None:intergenic | 25.0% |
| AAAGAAGAAGATGGAGAAAT+TGG | - | chr5.2:30313659-30313678 | MS.gene55208:CDS | 30.0% | |
| AAGGTTCAGTAGTAACTATA+AGG | - | chr5.2:30314584-30314603 | MS.gene55208:CDS | 30.0% | |
| ACAACAACAAATGAGAAACA+TGG | - | chr5.2:30314739-30314758 | MS.gene55208:CDS | 30.0% | |
| ACATCGTTTAATTCATCGAA+TGG | - | chr5.2:30314619-30314638 | MS.gene55208:CDS | 30.0% | |
| AGAAATGAACAACATGGTTA+TGG | - | chr5.2:30314820-30314839 | MS.gene55208:CDS | 30.0% | |
| GATGCTGAAAAATACTTCAA+TGG | - | chr5.2:30313689-30313708 | MS.gene55208:CDS | 30.0% | |
| TATGAACTTGGTTATGAACT+TGG | + | chr5.2:30313910-30313929 | None:intergenic | 30.0% | |
| ! | AGAAAGTGCAAAGTTCAATA+TGG | - | chr5.2:30313788-30313807 | MS.gene55208:CDS | 30.0% |
| ! | AGTCAATAAGCTTTGATATG+AGG | - | chr5.2:30314248-30314267 | MS.gene55208:CDS | 30.0% |
| ! | GATAATGATGATGATGATGT+TGG | - | chr5.2:30314358-30314377 | MS.gene55208:CDS | 30.0% |
| ! | GTTATTGTTGTTATTCTGAG+AGG | + | chr5.2:30313522-30313541 | None:intergenic | 30.0% |
| !! | GAAGTAGAATTTTTCAAAGC+AGG | + | chr5.2:30313869-30313888 | None:intergenic | 30.0% |
| AATAACAACAATAACCTCCG+TGG | - | chr5.2:30313527-30313546 | MS.gene55208:CDS | 35.0% | |
| AGAGAATCCAAGGAAAACAT+TGG | - | chr5.2:30314189-30314208 | MS.gene55208:CDS | 35.0% | |
| CTCTTCATACTTGAACAACA+AGG | - | chr5.2:30313559-30313578 | MS.gene55208:CDS | 35.0% | |
| CTTCTTCTTTCTTTACTCCA+AGG | + | chr5.2:30313649-30313668 | None:intergenic | 35.0% | |
| CTTGAACAACAAGGAAGTAA+AGG | - | chr5.2:30313568-30313587 | MS.gene55208:CDS | 35.0% | |
| CTTGAGTTTATTGGCATCTA+AGG | + | chr5.2:30313744-30313763 | None:intergenic | 35.0% | |
| GAAGACTCTTTCTATGAACT+TGG | + | chr5.2:30313922-30313941 | None:intergenic | 35.0% | |
| GAGGCTAAAAATACCATCTT+GGG | - | chr5.2:30314267-30314286 | MS.gene55208:CDS | 35.0% | |
| GGAGTAAAGAAAGAAGAAGA+TGG | - | chr5.2:30313650-30313669 | MS.gene55208:CDS | 35.0% | |
| GTTTCAGATCATGAAGATCA+AGG | - | chr5.2:30314565-30314584 | MS.gene55208:CDS | 35.0% | |
| TCCTTTCTGTTGCTGATAAA+GGG | + | chr5.2:30313617-30313636 | None:intergenic | 35.0% | |
| TGAGGCTAAAAATACCATCT+TGG | - | chr5.2:30314266-30314285 | MS.gene55208:CDS | 35.0% | |
| TGCACTTTCTATTCTCTTGT+TGG | + | chr5.2:30313778-30313797 | None:intergenic | 35.0% | |
| TTCAACAAGTAGAGAATCCA+AGG | - | chr5.2:30314179-30314198 | MS.gene55208:CDS | 35.0% | |
| TTCCTTTCTGTTGCTGATAA+AGG | + | chr5.2:30313618-30313637 | None:intergenic | 35.0% | |
| ! | AACACTTCCAATGTTTTCCT+TGG | + | chr5.2:30314199-30314218 | None:intergenic | 35.0% |
| ! | TTACAACCCAACAATTTTCC+CGG | + | chr5.2:30314682-30314701 | None:intergenic | 35.0% |
| ! | TTCAACAAAAGTGCAGTTCA+AGG | - | chr5.2:30314019-30314038 | MS.gene55208:CDS | 35.0% |
| ! | TTTGAGATTGAAAGCTTCAC+TGG | - | chr5.2:30314403-30314422 | MS.gene55208:CDS | 35.0% |
| !! | AGGAAAACATTGGAAGTGTT+TGG | - | chr5.2:30314199-30314218 | MS.gene55208:CDS | 35.0% |
| !! | AGGTTTAAGGTGGAAAGTTT+TGG | - | chr5.2:30314793-30314812 | MS.gene55208:CDS | 35.0% |
| !! | TCACTTGGTGCATAGAAATT+TGG | + | chr5.2:30314493-30314512 | None:intergenic | 35.0% |
| AAATCAACAAAGAGATGCCG+AGG | - | chr5.2:30314650-30314669 | MS.gene55208:CDS | 40.0% | |
| AAATGTTGCCTCAGATGACA+AGG | - | chr5.2:30314773-30314792 | MS.gene55208:CDS | 40.0% | |
| AAGAGTCTTCTTGCTTCTCT+TGG | - | chr5.2:30313932-30313951 | MS.gene55208:CDS | 40.0% | |
| ACCTTAAACCTTGTCATCTG+AGG | + | chr5.2:30314784-30314803 | None:intergenic | 40.0% | |
| AGGAGATCAAATTCACCACA+TGG | - | chr5.2:30314856-30314875 | MS.gene55208:CDS | 40.0% | |
| ATGAAGAGAAAGAACCACCA+CGG | + | chr5.2:30313547-30313566 | None:intergenic | 40.0% | |
| CAATATGGAACTCCAAGTGT+TGG | - | chr5.2:30313803-30313822 | MS.gene55208:CDS | 40.0% | |
| CATTCAATGCTTGCTTCACT+TGG | + | chr5.2:30314508-30314527 | None:intergenic | 40.0% | |
| CCTTTCTGTTGCTGATAAAG+GGG | + | chr5.2:30313616-30313635 | None:intergenic | 40.0% | |
| GAATTTGATCTCCTAAGAGG+AGG | + | chr5.2:30314850-30314869 | None:intergenic | 40.0% | |
| GGTGAATTTGATCTCCTAAG+AGG | + | chr5.2:30314853-30314872 | None:intergenic | 40.0% | |
| GGTGCAAGAAATGAACAACA+TGG | - | chr5.2:30314814-30314833 | MS.gene55208:CDS | 40.0% | |
| GTTATGGAAAACCTCCTCTT+AGG | - | chr5.2:30314836-30314855 | MS.gene55208:CDS | 40.0% | |
| GTTGATGTAAGTGATCATGC+AGG | - | chr5.2:30313986-30314005 | MS.gene55208:CDS | 40.0% | |
| TACAAAAGTTGTGCACCATG+TGG | + | chr5.2:30314874-30314893 | None:intergenic | 40.0% | |
| TCAGATGACAAGGTTTAAGG+TGG | - | chr5.2:30314783-30314802 | MS.gene55208:CDS | 40.0% | |
| TTCTTTACTCCAAGGTGAAG+AGG | + | chr5.2:30313641-30313660 | None:intergenic | 40.0% | |
| ! | CAGGTTGTAAAAGTGCACTT+TGG | + | chr5.2:30313850-30313869 | None:intergenic | 40.0% |
| ! | GTTATTCTGAGAGGTGAAAG+TGG | + | chr5.2:30313513-30313532 | None:intergenic | 40.0% |
| ! | TCAACATCACATGTTGCTTC+TGG | - | chr5.2:30314457-30314476 | MS.gene55208:CDS | 40.0% |
| !! | CAAGTGAAGCAAGCATTGAA+TGG | - | chr5.2:30314506-30314525 | MS.gene55208:CDS | 40.0% |
| !! | GTCATCTGAGGCAACATTTT+TGG | + | chr5.2:30314772-30314791 | None:intergenic | 40.0% |
| AACAACAATAACCTCCGTGG+TGG | - | chr5.2:30313530-30313549 | MS.gene55208:CDS | 45.0% | |
| AGAAAGGAACCTCTTCACCT+TGG | - | chr5.2:30313629-30313648 | MS.gene55208:CDS | 45.0% | |
| CAGAAAGCTGTTGATGTTGC+TGG | - | chr5.2:30314706-30314725 | MS.gene55208:CDS | 45.0% | |
| CCCCTTTATCAGCAACAGAA+AGG | - | chr5.2:30313613-30313632 | MS.gene55208:CDS | 45.0% | |
| CTTGATTCTGAGCCAACACT+TGG | + | chr5.2:30313818-30313837 | None:intergenic | 45.0% | |
| GCCTCAGATGACAAGGTTTA+AGG | - | chr5.2:30314780-30314799 | MS.gene55208:CDS | 45.0% | |
| TTCTGTTGCTGATAAAGGGG+TGG | + | chr5.2:30313613-30313632 | None:intergenic | 45.0% | |
| ! | GCATCTAAGGTAGCAAGTCT+TGG | + | chr5.2:30313731-30313750 | None:intergenic | 45.0% |
| !! | AGCAAGCATTGAATGGAGTG+TGG | - | chr5.2:30314513-30314532 | MS.gene55208:CDS | 45.0% |
| !! | GGGTGGATTGAATCAGCAAA+AGG | + | chr5.2:30313596-30313615 | None:intergenic | 45.0% |
| AAGAGAAAGAACCACCACGG+AGG | + | chr5.2:30313544-30313563 | None:intergenic | 50.0% | |
| TCAACAAAGAGATGCCGAGG+CGG | - | chr5.2:30314653-30314672 | MS.gene55208:CDS | 50.0% | |
| TTCGAAGCAGCTTCCCAAGA+TGG | + | chr5.2:30314283-30314302 | None:intergenic | 50.0% | |
| CGGCGTCCGGGAAAATTGTT+GGG | - | chr5.2:30314673-30314692 | MS.gene55208:CDS | 55.0% | |
| AACCGAGACTCGTGCTGCAG+CGG | - | chr5.2:30314111-30314130 | MS.gene55208:CDS | 60.0% | |
| GCGGCGTCCGGGAAAATTGT+TGG | - | chr5.2:30314672-30314691 | MS.gene55208:CDS | 60.0% | |
| TTCCGCTGCAGCACGAGTCT+CGG | + | chr5.2:30314116-30314135 | None:intergenic | 60.0% | |
| ! | AATTTTCCCGGACGCCGCCT+CGG | + | chr5.2:30314670-30314689 | None:intergenic | 60.0% |
| AGAGATGCCGAGGCGGCGTC+CGG | - | chr5.2:30314660-30314679 | MS.gene55208:CDS | 70.0% | |
| GAGATGCCGAGGCGGCGTCC+GGG | - | chr5.2:30314661-30314680 | MS.gene55208:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 30313494 | 30314900 | 30313494 | ID=MS.gene55208 |
| chr5.2 | mRNA | 30313494 | 30314900 | 30313494 | ID=MS.gene55208.t1;Parent=MS.gene55208 |
| chr5.2 | exon | 30313494 | 30314900 | 30313494 | ID=MS.gene55208.t1.exon1;Parent=MS.gene55208.t1 |
| chr5.2 | CDS | 30313494 | 30314900 | 30313494 | ID=cds.MS.gene55208.t1;Parent=MS.gene55208.t1 |
| Gene Sequence |
| Protein sequence |
