Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56447.t1 | RHN62068.1 | 93.2 | 590 | 40 | 0 | 81 | 670 | 1 | 590 | 1.90E-269 | 938.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56447.t1 | Q8GYM6 | 62.6 | 465 | 140 | 8 | 81 | 537 | 1 | 439 | 2.4e-143 | 510.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56447.t1 | A0A396IBC3 | 93.2 | 590 | 40 | 0 | 81 | 670 | 1 | 590 | 1.4e-269 | 938.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene56447 | 0.802759 | 4.82E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene56447 | 0.809098 | 2.24E-50 | -1.69E-46 |
| MS.gene050941 | MS.gene56447 | 0.831422 | 1.68E-55 | -1.69E-46 |
| MS.gene052012 | MS.gene56447 | 0.806775 | 6.98E-50 | -1.69E-46 |
| MS.gene052518 | MS.gene56447 | 0.813862 | 2.06E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene56447 | 0.808029 | 3.79E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene56447 | 0.803704 | 3.07E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene56447 | 0.814331 | 1.63E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene56447 | 0.850237 | 1.93E-60 | -1.69E-46 |
| MS.gene05517 | MS.gene56447 | 0.818601 | 1.80E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene56447 | 0.811251 | 7.68E-51 | -1.69E-46 |
| MS.gene055926 | MS.gene56447 | 0.812044 | 5.17E-51 | -1.69E-46 |
| MS.gene057055 | MS.gene56447 | 0.816919 | 4.31E-52 | -1.69E-46 |
| MS.gene059283 | MS.gene56447 | 0.838147 | 3.42E-57 | -1.69E-46 |
| MS.gene059725 | MS.gene56447 | 0.826511 | 2.61E-54 | -1.69E-46 |
| MS.gene059842 | MS.gene56447 | 0.821931 | 3.10E-53 | -1.69E-46 |
| MS.gene06052 | MS.gene56447 | 0.801744 | 7.79E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene56447 | 0.805244 | 1.47E-49 | -1.69E-46 |
| MS.gene060685 | MS.gene56447 | 0.801254 | 9.82E-49 | -1.69E-46 |
| MS.gene060802 | MS.gene56447 | 0.81905 | 1.42E-52 | -1.69E-46 |
| MS.gene060803 | MS.gene56447 | 0.829446 | 5.13E-55 | -1.69E-46 |
| MS.gene060932 | MS.gene56447 | 0.817492 | 3.21E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56447.t1 | MTR_4g083690 | 90.169 | 590 | 18 | 2 | 81 | 670 | 1 | 550 | 0.0 | 1025 |
| MS.gene56447.t1 | MTR_2g068690 | 55.276 | 635 | 198 | 17 | 81 | 670 | 1 | 594 | 0.0 | 592 |
| MS.gene56447.t1 | MTR_7g094070 | 59.586 | 532 | 124 | 6 | 111 | 633 | 1 | 450 | 0.0 | 590 |
| MS.gene56447.t1 | MTR_7g094060 | 49.673 | 459 | 124 | 10 | 229 | 670 | 2 | 370 | 4.48e-109 | 335 |
| MS.gene56447.t1 | MTR_1g104820 | 52.137 | 234 | 110 | 1 | 115 | 348 | 141 | 372 | 2.66e-73 | 241 |
| MS.gene56447.t1 | MTR_1g104820 | 52.137 | 234 | 110 | 1 | 115 | 348 | 202 | 433 | 1.04e-72 | 241 |
| MS.gene56447.t1 | MTR_1g104820 | 49.721 | 179 | 90 | 0 | 115 | 293 | 141 | 319 | 1.62e-56 | 195 |
| MS.gene56447.t1 | MTR_1g104820 | 50.000 | 174 | 87 | 0 | 115 | 288 | 141 | 314 | 1.03e-55 | 192 |
| MS.gene56447.t1 | MTR_5g055170 | 32.932 | 249 | 159 | 5 | 110 | 357 | 5 | 246 | 1.57e-40 | 154 |
| MS.gene56447.t1 | MTR_5g010140 | 32.800 | 250 | 158 | 6 | 110 | 357 | 5 | 246 | 1.63e-39 | 151 |
| MS.gene56447.t1 | MTR_5g055170 | 30.964 | 197 | 129 | 4 | 162 | 357 | 1 | 191 | 1.50e-27 | 115 |
| MS.gene56447.t1 | MTR_7g055650 | 26.522 | 230 | 152 | 4 | 124 | 353 | 24 | 236 | 3.47e-20 | 90.9 |
| MS.gene56447.t1 | MTR_5g010140 | 33.913 | 115 | 70 | 3 | 243 | 357 | 31 | 139 | 2.31e-16 | 81.3 |
| MS.gene56447.t1 | MTR_7g055650 | 26.316 | 209 | 137 | 4 | 124 | 332 | 24 | 215 | 1.64e-15 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56447.t1 | AT5G45190 | 55.519 | 607 | 186 | 14 | 81 | 662 | 1 | 548 | 0.0 | 595 |
| MS.gene56447.t1 | AT5G45190 | 54.045 | 618 | 189 | 15 | 81 | 662 | 1 | 559 | 0.0 | 578 |
| MS.gene56447.t1 | AT4G19600 | 55.705 | 596 | 171 | 13 | 81 | 666 | 1 | 513 | 0.0 | 574 |
| MS.gene56447.t1 | AT5G45190 | 51.205 | 498 | 158 | 14 | 191 | 662 | 1 | 439 | 2.13e-139 | 416 |
| MS.gene56447.t1 | AT4G19560 | 48.780 | 451 | 175 | 10 | 95 | 542 | 14 | 411 | 5.73e-115 | 353 |
| MS.gene56447.t1 | AT1G35440 | 50.607 | 247 | 113 | 2 | 114 | 358 | 7 | 246 | 1.69e-84 | 266 |
| MS.gene56447.t1 | AT1G27630 | 53.782 | 238 | 107 | 2 | 112 | 349 | 32 | 266 | 5.32e-84 | 267 |
| MS.gene56447.t1 | AT1G27630 | 53.712 | 229 | 103 | 2 | 112 | 340 | 32 | 257 | 1.83e-81 | 259 |
| MS.gene56447.t1 | AT4G19560 | 43.767 | 361 | 149 | 9 | 185 | 542 | 30 | 339 | 6.61e-67 | 225 |
| MS.gene56447.t1 | AT1G27630 | 49.457 | 184 | 90 | 2 | 166 | 349 | 1 | 181 | 2.86e-54 | 186 |
| MS.gene56447.t1 | AT1G27630 | 49.457 | 184 | 90 | 2 | 166 | 349 | 1 | 181 | 2.86e-54 | 186 |
| MS.gene56447.t1 | AT1G27630 | 49.457 | 184 | 90 | 2 | 166 | 349 | 1 | 181 | 2.86e-54 | 186 |
| MS.gene56447.t1 | AT1G27630 | 49.457 | 184 | 90 | 2 | 166 | 349 | 1 | 181 | 2.86e-54 | 186 |
| MS.gene56447.t1 | AT2G26430 | 33.200 | 250 | 157 | 6 | 110 | 357 | 5 | 246 | 2.83e-39 | 150 |
| MS.gene56447.t1 | AT2G26430 | 33.200 | 250 | 157 | 6 | 110 | 357 | 5 | 246 | 9.32e-37 | 140 |
| MS.gene56447.t1 | AT2G26430 | 31.313 | 198 | 127 | 5 | 162 | 357 | 1 | 191 | 4.07e-27 | 114 |
| MS.gene56447.t1 | AT2G26430 | 31.313 | 198 | 127 | 5 | 162 | 357 | 1 | 191 | 4.07e-27 | 114 |
| MS.gene56447.t1 | AT5G48630 | 26.009 | 223 | 148 | 4 | 131 | 353 | 31 | 236 | 8.84e-17 | 81.3 |
| MS.gene56447.t1 | AT5G48630 | 26.009 | 223 | 148 | 4 | 131 | 353 | 34 | 239 | 1.77e-16 | 80.5 |
| MS.gene56447.t1 | AT5G48640 | 25.248 | 202 | 134 | 2 | 151 | 352 | 3 | 187 | 2.22e-16 | 79.0 |
| MS.gene56447.t1 | AT5G48640 | 26.341 | 205 | 134 | 4 | 148 | 352 | 48 | 235 | 1.21e-14 | 74.7 |
| MS.gene56447.t1 | AT5G48640 | 23.626 | 182 | 122 | 2 | 171 | 352 | 3 | 167 | 8.54e-12 | 65.1 |
| MS.gene56447.t1 | AT5G48640 | 23.626 | 182 | 122 | 2 | 171 | 352 | 3 | 167 | 8.54e-12 | 65.1 |
| MS.gene56447.t1 | AT5G48640 | 23.626 | 182 | 122 | 2 | 171 | 352 | 3 | 167 | 8.54e-12 | 65.1 |
Find 165 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAATCTTGATTGCTTCTT+TGG | 0.078252 | 4.4:+29379316 | None:intergenic |
| CTGACGGAAGCTTCACTTTC+AGG | 0.142810 | 4.4:+29380143 | None:intergenic |
| AGCAACATTGAACTTCTTTA+TGG | 0.142833 | 4.4:+29380377 | None:intergenic |
| TCAAGACGTTTCTTCGTTTC+TGG | 0.177305 | 4.4:+29378834 | None:intergenic |
| TTCGTTTCTGGTTGACTTGC+TGG | 0.211936 | 4.4:+29378846 | None:intergenic |
| CCTAATTCTGTAGCCTCCTT+TGG | 0.222544 | 4.4:+29379425 | None:intergenic |
| CCAAAGGAGGCTACAGAATT+AGG | 0.239989 | 4.4:-29379425 | MS.gene56447:CDS |
| ATGGCTGCGCGGCGCACATT+AGG | 0.242311 | 4.4:-29384703 | MS.gene56447:CDS |
| GATGGATTCAATGCAGAAAA+AGG | 0.254848 | 4.4:-29378930 | MS.gene56447:CDS |
| GTCTTTGTCAATCATCTTGT+TGG | 0.262210 | 4.4:+29379169 | None:intergenic |
| CTAATTCTGTAGCCTCCTTT+GGG | 0.284087 | 4.4:+29379426 | None:intergenic |
| TGTACATTCTTACAAGATTT+AGG | 0.291338 | 4.4:-29383501 | MS.gene56447:CDS |
| TGGCTGCGCGGCGCACATTA+GGG | 0.292329 | 4.4:-29384702 | MS.gene56447:CDS |
| GCCTCGACAAGGGGCTTATA+TGG | 0.299564 | 4.4:+29380399 | None:intergenic |
| GCGCGGCGCACATTAGGGTT+TGG | 0.301000 | 4.4:-29384697 | MS.gene56447:CDS |
| CTGCACTCCCATCATTGCTT+TGG | 0.304701 | 4.4:+29379564 | None:intergenic |
| TCAATCTTGATTGCTTCTTT+GGG | 0.317346 | 4.4:+29379317 | None:intergenic |
| GAATCGATGACAAAATATTA+TGG | 0.323728 | 4.4:+29383042 | None:intergenic |
| CGCGGCGCACATTAGGGTTT+GGG | 0.325377 | 4.4:-29384696 | MS.gene56447:CDS |
| GGGTTAGTTGCACTGTTGAC+TGG | 0.342169 | 4.4:+29383718 | None:intergenic |
| GAAGCAGAAGGGGCTGCTGC+AGG | 0.353238 | 4.4:-29379716 | MS.gene56447:CDS |
| CCCGACAAAGATAAACTTGT+TGG | 0.366292 | 4.4:-29379470 | MS.gene56447:CDS |
| GAACTTGGCAGCAAGGAAAA+TGG | 0.372793 | 4.4:+29380165 | None:intergenic |
| CAATGATGGGAGTGCAGAAA+TGG | 0.380246 | 4.4:-29379558 | MS.gene56447:CDS |
| CTTCAATGTTGGTCAAAATC+TGG | 0.381107 | 4.4:-29379369 | MS.gene56447:CDS |
| TCCAACAAGTTTATCTTTGT+CGG | 0.386957 | 4.4:+29379469 | None:intergenic |
| TTTATCCTCTGTGCAGCAGC+AGG | 0.390517 | 4.4:+29381618 | None:intergenic |
| CAGACACAAGTGCTGCCATA+TGG | 0.396129 | 4.4:+29383697 | None:intergenic |
| CCGCGCAGCCATCACCTTTG+CGG | 0.408629 | 4.4:+29384714 | None:intergenic |
| TATGATGTGGCTTAAATTGT+AGG | 0.409195 | 4.4:+29380200 | None:intergenic |
| GCTTCACTTCCTTGTGATTG+TGG | 0.410396 | 4.4:+29379734 | None:intergenic |
| TTCTGAGGTCTGAGAATCCC+TGG | 0.414945 | 4.4:+29379499 | None:intergenic |
| TGATGTCACCCCACGCCAAT+TGG | 0.422376 | 4.4:-29380092 | MS.gene56447:CDS |
| GCATGGAACTTTGTTAATGA+TGG | 0.427217 | 4.4:-29380333 | MS.gene56447:CDS |
| GAGGGTTGTACTTGCCACTT+TGG | 0.427992 | 4.4:-29380445 | MS.gene56447:CDS |
| CCAACAAGTTTATCTTTGTC+GGG | 0.428315 | 4.4:+29379470 | None:intergenic |
| AAGCAGAAGGGGCTGCTGCA+GGG | 0.429292 | 4.4:-29379715 | MS.gene56447:CDS |
| AGAGACTCCTCGTCCTCTTA+AGG | 0.429831 | 4.4:-29381682 | MS.gene56447:CDS |
| AAGCTTCACTTTCAGGAACT+TGG | 0.431818 | 4.4:+29380150 | None:intergenic |
| TCACCATGATCTTCATCATC+AGG | 0.433315 | 4.4:+29378978 | None:intergenic |
| CGTCAGACGGTGAGAAGGTC+TGG | 0.435777 | 4.4:-29380126 | MS.gene56447:CDS |
| GACAATAAAGAAAGATGTAA+TGG | 0.442098 | 4.4:-29379099 | MS.gene56447:CDS |
| CATATGGCAGCACTTGTGTC+TGG | 0.444420 | 4.4:-29383696 | MS.gene56447:CDS |
| ACCGAAAACCAAAGCAATGA+TGG | 0.455608 | 4.4:-29379572 | MS.gene56447:CDS |
| GACGATAAAGAAAGATGTAA+TGG | 0.462192 | 4.4:-29379240 | MS.gene56447:CDS |
| GGGAGCGAGAGCTGCTGCAA+GGG | 0.466897 | 4.4:-29379693 | MS.gene56447:CDS |
| CTCTCCATCTGATGTAGCTC+GGG | 0.468669 | 4.4:+29387685 | None:intergenic |
| GCCCAATCACCACAGTAAAT+CGG | 0.470110 | 4.4:-29384737 | MS.gene56447:intron |
| GATGGCACCAACCCTCCAAT+TGG | 0.470978 | 4.4:+29380077 | None:intergenic |
| ATGAGAATAACATCCTTAAG+AGG | 0.474735 | 4.4:+29381669 | None:intergenic |
| AGCAGAAGGGGCTGCTGCAG+GGG | 0.477059 | 4.4:-29379714 | MS.gene56447:CDS |
| CATCTGATGTAGCTCGGGAT+GGG | 0.477381 | 4.4:+29387690 | None:intergenic |
| ACAGGCGTGGTGGCATGGGT+TGG | 0.482586 | 4.4:-29387774 | None:intergenic |
| ACCTTGAGGAGGCTAGAGAC+GGG | 0.482848 | 4.4:-29378953 | MS.gene56447:CDS |
| CGGTGAGAAGGTCTGGTGGC+AGG | 0.483751 | 4.4:-29380119 | MS.gene56447:CDS |
| CCTCTCCATCTGATGTAGCT+CGG | 0.488469 | 4.4:+29387684 | None:intergenic |
| ATCCTTCCCATCCCCTTACT+CGG | 0.488602 | 4.4:+29378788 | None:intergenic |
| ACCAACCCTCCAATTGGCGT+GGG | 0.488824 | 4.4:+29380083 | None:intergenic |
| AAGAAGAAGCATTGGGTCGC+TGG | 0.490936 | 4.4:-29383614 | MS.gene56447:CDS |
| CCATCTGATGTAGCTCGGGA+TGG | 0.494508 | 4.4:+29387689 | None:intergenic |
| AATGCTCCGTCAAGAAAAGA+TGG | 0.494895 | 4.4:-29383564 | MS.gene56447:CDS |
| TGGTCAAAATCTGGAGCGTC+GGG | 0.495188 | 4.4:-29379360 | MS.gene56447:CDS |
| CATATCCGGTGAACAATCCT+TGG | 0.497561 | 4.4:-29387726 | MS.gene56447:CDS |
| GCAGAAGGGGCTGCTGCAGG+GGG | 0.499172 | 4.4:-29379713 | MS.gene56447:CDS |
| GCTTGAAGATGGAGTAGAGT+TGG | 0.501501 | 4.4:-29379051 | MS.gene56447:CDS |
| AAGCCACATCATATTGCGGC+AGG | 0.507122 | 4.4:-29380190 | MS.gene56447:CDS |
| CTTTCAGGAACTTGGCAGCA+AGG | 0.508345 | 4.4:+29380158 | None:intergenic |
| GAGCGTCGGGAAGGCCCACT+TGG | 0.512626 | 4.4:-29379347 | MS.gene56447:CDS |
| AGATAAGCAAGAAGAAGCAT+TGG | 0.512627 | 4.4:-29383622 | MS.gene56447:CDS |
| ATTGAGAGGGAGCTTGAAGA+TGG | 0.513193 | 4.4:-29379062 | MS.gene56447:CDS |
| ATTGAGAGGGAGCTTGAAGA+TGG | 0.513193 | 4.4:-29379203 | MS.gene56447:CDS |
| AACAGTGCAACTAACCCATA+TGG | 0.513524 | 4.4:-29383712 | MS.gene56447:CDS |
| TTCTTTATGGCCTCGACAAG+GGG | 0.513974 | 4.4:+29380390 | None:intergenic |
| AGACACAAGTGCTGCCATAT+GGG | 0.513981 | 4.4:+29383698 | None:intergenic |
| TGGGGCTCGTACTGTGGCCA+AGG | 0.518562 | 4.4:+29387709 | None:intergenic |
| TCGGGATGGGGCTCGTACTG+TGG | 0.520214 | 4.4:+29387703 | None:intergenic |
| AAAGAAAGATGTAATGGATG+AGG | 0.521411 | 4.4:-29379234 | MS.gene56447:CDS |
| ACAAGATGGACTCGGAAACC+AGG | 0.523113 | 4.4:-29379517 | MS.gene56447:CDS |
| TCCTGCGATGAGTGAAGAGC+AGG | 0.524474 | 4.4:-29379669 | MS.gene56447:CDS |
| CAAGGGGCTTATATGGATGT+TGG | 0.524723 | 4.4:+29380406 | None:intergenic |
| CATGGAACTTTGTTAATGAT+GGG | 0.529596 | 4.4:-29380332 | MS.gene56447:intron |
| TGTCACCCCACGCCAATTGG+AGG | 0.530719 | 4.4:-29380089 | MS.gene56447:CDS |
| GAACAATCGCAAGAGAAAGA+AGG | 0.530737 | 4.4:-29378877 | MS.gene56447:CDS |
| GGGGAGCGAGAGCTGCTGCA+AGG | 0.533292 | 4.4:-29379694 | MS.gene56447:CDS |
| TTGGTCAAAATCTGGAGCGT+CGG | 0.534668 | 4.4:-29379361 | MS.gene56447:CDS |
| ATCTGATGTAGCTCGGGATG+GGG | 0.535415 | 4.4:+29387691 | None:intergenic |
| AATCAAGATTGACAAAGATA+AGG | 0.536877 | 4.4:-29379306 | MS.gene56447:CDS |
| CCATCCCGAGCTACATCAGA+TGG | 0.537699 | 4.4:-29387689 | MS.gene56447:CDS |
| GACCTTGAGGAGGCTAGAGA+CGG | 0.538134 | 4.4:-29378954 | MS.gene56447:CDS |
| CACCAACCCTCCAATTGGCG+TGG | 0.539896 | 4.4:+29380082 | None:intergenic |
| GGTTAGTTGCACTGTTGACT+GGG | 0.542770 | 4.4:+29383719 | None:intergenic |
| TAAATCGGCCGCAAAGGTGA+TGG | 0.544210 | 4.4:-29384722 | MS.gene56447:CDS |
| GGAGCGAGAGCTGCTGCAAG+GGG | 0.545688 | 4.4:-29379692 | MS.gene56447:CDS |
| GCCTGCTCTTCACTCATCGC+AGG | 0.545877 | 4.4:+29379668 | None:intergenic |
| AATGATGGGAGTGCAGAAAT+GGG | 0.546932 | 4.4:-29379557 | MS.gene56447:CDS |
| TGATGACGAGAGAACATATC+CGG | 0.549123 | 4.4:-29387740 | MS.gene56447:CDS |
| AACAAGTCTAGCTTCAATGT+TGG | 0.549540 | 4.4:-29379380 | MS.gene56447:CDS |
| CCACAGTAAATCGGCCGCAA+AGG | 0.550831 | 4.4:-29384728 | MS.gene56447:intron |
| AGAAGTTAGCAATCAAATGT+TGG | 0.552225 | 4.4:-29379780 | MS.gene56447:CDS |
| GATAAGCAAGAAGAAGCATT+GGG | 0.552512 | 4.4:-29383621 | MS.gene56447:CDS |
| AGAGAAACTTGTTGCCCCAA+AGG | 0.553413 | 4.4:-29379441 | MS.gene56447:CDS |
| AGTTCCATGCAACTTGTGCA+AGG | 0.554121 | 4.4:+29380346 | None:intergenic |
| CCTGACCCGAGTGCATAAAA+CGG | 0.556406 | 4.4:+29384668 | None:intergenic |
| TCTGGAGAGTTGCCACATCA+TGG | 0.557018 | 4.4:-29383678 | MS.gene56447:CDS |
| TTTCCACAGATGAGCACTGA+GGG | 0.558715 | 4.4:+29379618 | None:intergenic |
| CTTCTTTATGGCCTCGACAA+GGG | 0.558922 | 4.4:+29380389 | None:intergenic |
| CACAAGGAAGTGAAGCAGAA+GGG | 0.559027 | 4.4:-29379727 | MS.gene56447:CDS |
| AACAATCGCAAGAGAAAGAA+GGG | 0.561015 | 4.4:-29378876 | MS.gene56447:CDS |
| CCCCGTCTCTAGCCTCCTCA+AGG | 0.562396 | 4.4:+29378952 | None:intergenic |
| GATTGACAAAGATAAGGTAA+AGG | 0.564547 | 4.4:-29379300 | MS.gene56447:CDS |
| ACTTCTTTATGGCCTCGACA+AGG | 0.571121 | 4.4:+29380388 | None:intergenic |
| TTATCCTCTGTGCAGCAGCA+GGG | 0.572300 | 4.4:+29381619 | None:intergenic |
| ACGCCCTTGCACAAGTTGCA+TGG | 0.578134 | 4.4:-29380350 | MS.gene56447:CDS |
| TAATTCTGTAGCCTCCTTTG+GGG | 0.580016 | 4.4:+29379427 | None:intergenic |
| CCGAAAACCAAAGCAATGAT+GGG | 0.583069 | 4.4:-29379571 | MS.gene56447:CDS |
| CCGTCAGATGCTCCATGATG+TGG | 0.583282 | 4.4:+29383666 | None:intergenic |
| CAAAATCTGGAGCGTCGGGA+AGG | 0.591685 | 4.4:-29379356 | MS.gene56447:CDS |
| CTTTGGGTGACTGACCAAGT+GGG | 0.592539 | 4.4:+29379333 | None:intergenic |
| AAAGTGAAGCTTCCGTCAGA+CGG | 0.595709 | 4.4:-29380139 | MS.gene56447:CDS |
| CGAGCTACATCAGATGGAGA+GGG | 0.597739 | 4.4:-29387683 | MS.gene56447:CDS |
| CGAGGATGATCTCATTGAGA+GGG | 0.600498 | 4.4:-29379075 | MS.gene56447:CDS |
| TCACAAGGAAGTGAAGCAGA+AGG | 0.601746 | 4.4:-29379728 | MS.gene56447:CDS |
| TCCATATAAGCCCCTTGTCG+AGG | 0.604206 | 4.4:-29380400 | MS.gene56447:CDS |
| GCTTCCGTCAGACGGTGAGA+AGG | 0.605256 | 4.4:-29380131 | MS.gene56447:CDS |
| GTCACCCCACGCCAATTGGA+GGG | 0.605796 | 4.4:-29380088 | MS.gene56447:intron |
| ATTCAAGTCAAAAGCCAAAG+TGG | 0.607668 | 4.4:+29380431 | None:intergenic |
| ACAAGGAAGTGAAGCAGAAG+GGG | 0.610265 | 4.4:-29379726 | MS.gene56447:CDS |
| CTCATGCAAAGAATGACCGA+AGG | 0.612140 | 4.4:-29383006 | MS.gene56447:CDS |
| CCACATCATGGAGCATCTGA+CGG | 0.614623 | 4.4:-29383666 | MS.gene56447:CDS |
| GAAACTTGTTGCCCCAAAGG+AGG | 0.614964 | 4.4:-29379438 | MS.gene56447:CDS |
| AGGAGGCTACAGAATTAGGA+AGG | 0.615379 | 4.4:-29379421 | MS.gene56447:CDS |
| GAGGAGGCTAGAGACGGGGA+TGG | 0.615541 | 4.4:-29378948 | MS.gene56447:CDS |
| TCTTTGGGTGACTGACCAAG+TGG | 0.615707 | 4.4:+29379332 | None:intergenic |
| TGAGGATGATCTCATTGAGA+GGG | 0.615735 | 4.4:-29379216 | MS.gene56447:CDS |
| TGACATTACTGATCACAAGA+TGG | 0.617081 | 4.4:-29379531 | MS.gene56447:CDS |
| AGATCATGGTGAGGACCTTG+AGG | 0.617441 | 4.4:-29378967 | MS.gene56447:CDS |
| TGTGGCCAAGGATTGTTCAC+CGG | 0.619078 | 4.4:+29387721 | None:intergenic |
| TCCACAGATGAGCACTGAGG+GGG | 0.619491 | 4.4:+29379620 | None:intergenic |
| GCTGTTGCTATAGTTACTTG+AGG | 0.621138 | 4.4:+29383064 | None:intergenic |
| CAGACCTTCTCACCGTCTGA+CGG | 0.622614 | 4.4:+29380127 | None:intergenic |
| CCGAGCTACATCAGATGGAG+AGG | 0.623746 | 4.4:-29387684 | MS.gene56447:CDS |
| GTTCCATGCAACTTGTGCAA+GGG | 0.625785 | 4.4:+29380347 | None:intergenic |
| ATGAGGATGATCTCATTGAG+AGG | 0.630170 | 4.4:-29379217 | MS.gene56447:CDS |
| AAAGAAAGATGTAATGGACG+AGG | 0.631127 | 4.4:-29379093 | MS.gene56447:CDS |
| AAGCCTGATGATGAAGATCA+TGG | 0.631489 | 4.4:-29378981 | MS.gene56447:CDS |
| ATAACATCCTTAAGAGGACG+AGG | 0.631649 | 4.4:+29381675 | None:intergenic |
| ACGAGGATGATCTCATTGAG+AGG | 0.632466 | 4.4:-29379076 | MS.gene56447:CDS |
| CAAGATGGACTCGGAAACCA+GGG | 0.633256 | 4.4:-29379516 | MS.gene56447:CDS |
| ATTTAAGCCACATCATATTG+CGG | 0.635161 | 4.4:-29380194 | MS.gene56447:CDS |
| ATGTTCTCTCGTCATCAGCA+CGG | 0.636201 | 4.4:+29387746 | None:intergenic |
| TACTGATCACAAGATGGACT+CGG | 0.641859 | 4.4:-29379525 | MS.gene56447:CDS |
| CCGCAAAGGTGATGGCTGCG+CGG | 0.643173 | 4.4:-29384714 | MS.gene56447:CDS |
| TGCACAGAGGATAAAACAGA+AGG | 0.652187 | 4.4:-29381610 | MS.gene56447:intron |
| AGCTACATCAGATGGAGAGG+GGG | 0.657443 | 4.4:-29387681 | MS.gene56447:intron |
| TCATGCAAAGAATGACCGAA+GGG | 0.662631 | 4.4:-29383005 | MS.gene56447:intron |
| CCTTGAGGAGGCTAGAGACG+GGG | 0.664202 | 4.4:-29378952 | MS.gene56447:CDS |
| CCAACCCTCCAATTGGCGTG+GGG | 0.665875 | 4.4:+29380084 | None:intergenic |
| TCATGGTGAGGACCTTGAGG+AGG | 0.679281 | 4.4:-29378964 | MS.gene56447:CDS |
| GAGCTACATCAGATGGAGAG+GGG | 0.681917 | 4.4:-29387682 | MS.gene56447:CDS |
| TTCCACAGATGAGCACTGAG+GGG | 0.694472 | 4.4:+29379619 | None:intergenic |
| AATAGAATTCCACAATCACA+AGG | 0.696079 | 4.4:-29379743 | MS.gene56447:CDS |
| TGATGATGAAGATCATGGTG+AGG | 0.696108 | 4.4:-29378976 | MS.gene56447:CDS |
| CAGACGGTGAGAAGGTCTGG+TGG | 0.696264 | 4.4:-29380123 | MS.gene56447:CDS |
| GCACCTGCCGCAATATGATG+TGG | 0.706575 | 4.4:+29380187 | None:intergenic |
| AAGACCCTGCTGCTGCACAG+AGG | 0.732068 | 4.4:-29381623 | MS.gene56447:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 29378803 | 29387782 | 29378803 | ID=MS.gene56447 |
| chr4.4 | mRNA | 29378803 | 29387782 | 29378803 | ID=MS.gene56447.t1;Parent=MS.gene56447 |
| chr4.4 | exon | 29387682 | 29387782 | 29387682 | ID=MS.gene56447.t1.exon1;Parent=MS.gene56447.t1 |
| chr4.4 | CDS | 29387682 | 29387782 | 29387682 | ID=cds.MS.gene56447.t1;Parent=MS.gene56447.t1 |
| chr4.4 | exon | 29384646 | 29384744 | 29384646 | ID=MS.gene56447.t1.exon2;Parent=MS.gene56447.t1 |
| chr4.4 | CDS | 29384646 | 29384744 | 29384646 | ID=cds.MS.gene56447.t1;Parent=MS.gene56447.t1 |
| chr4.4 | exon | 29383486 | 29383755 | 29383486 | ID=MS.gene56447.t1.exon3;Parent=MS.gene56447.t1 |
| chr4.4 | CDS | 29383486 | 29383755 | 29383486 | ID=cds.MS.gene56447.t1;Parent=MS.gene56447.t1 |
| chr4.4 | exon | 29383006 | 29383087 | 29383006 | ID=MS.gene56447.t1.exon4;Parent=MS.gene56447.t1 |
| chr4.4 | CDS | 29383006 | 29383087 | 29383006 | ID=cds.MS.gene56447.t1;Parent=MS.gene56447.t1 |
| chr4.4 | exon | 29381611 | 29381745 | 29381611 | ID=MS.gene56447.t1.exon5;Parent=MS.gene56447.t1 |
| chr4.4 | CDS | 29381611 | 29381745 | 29381611 | ID=cds.MS.gene56447.t1;Parent=MS.gene56447.t1 |
| chr4.4 | exon | 29380333 | 29380508 | 29380333 | ID=MS.gene56447.t1.exon6;Parent=MS.gene56447.t1 |
| chr4.4 | CDS | 29380333 | 29380508 | 29380333 | ID=cds.MS.gene56447.t1;Parent=MS.gene56447.t1 |
| chr4.4 | exon | 29380089 | 29380240 | 29380089 | ID=MS.gene56447.t1.exon7;Parent=MS.gene56447.t1 |
| chr4.4 | CDS | 29380089 | 29380240 | 29380089 | ID=cds.MS.gene56447.t1;Parent=MS.gene56447.t1 |
| chr4.4 | exon | 29378803 | 29379800 | 29378803 | ID=MS.gene56447.t1.exon8;Parent=MS.gene56447.t1 |
| chr4.4 | CDS | 29378803 | 29379800 | 29378803 | ID=cds.MS.gene56447.t1;Parent=MS.gene56447.t1 |
| Gene Sequence |
| Protein sequence |
