Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56696.t1 | XP_013454243.1 | 100 | 112 | 0 | 0 | 1 | 112 | 26 | 137 | 1.10E-57 | 232.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56696.t1 | Q9LMK0 | 87.5 | 112 | 14 | 0 | 1 | 112 | 1 | 112 | 7.7e-55 | 214.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56696.t1 | A0A072UET3 | 100.0 | 112 | 0 | 0 | 1 | 112 | 26 | 137 | 8.2e-58 | 232.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053952 | MS.gene56696 | 0.849632 | 2.86E-60 | -1.69E-46 |
MS.gene057094 | MS.gene56696 | 0.814489 | 1.50E-51 | -1.69E-46 |
MS.gene06001 | MS.gene56696 | 0.806043 | 9.96E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene56696 | MS.gene23058 | PPI |
MS.gene56696 | MS.gene09845 | PPI |
MS.gene56696 | MS.gene007067 | PPI |
MS.gene56696 | MS.gene022752 | PPI |
MS.gene56696 | MS.gene29581 | PPI |
MS.gene56696 | MS.gene070073 | PPI |
MS.gene56696 | MS.gene39294 | PPI |
MS.gene56696 | MS.gene64512 | PPI |
MS.gene051904 | MS.gene56696 | PPI |
MS.gene56696 | MS.gene020215 | PPI |
MS.gene56696 | MS.gene007066 | PPI |
MS.gene56696 | MS.gene051904 | PPI |
MS.gene56696 | MS.gene018553 | PPI |
MS.gene56696 | MS.gene061905 | PPI |
MS.gene29581 | MS.gene56696 | PPI |
MS.gene56696 | MS.gene80639 | PPI |
MS.gene56696 | MS.gene051903 | PPI |
MS.gene56696 | MS.gene45646 | PPI |
MS.gene56696 | MS.gene23059 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56696.t1 | MTR_5g081705 | 100.000 | 112 | 0 | 0 | 1 | 112 | 26 | 137 | 1.99e-79 | 229 |
MS.gene56696.t1 | MTR_0699s0020 | 94.643 | 112 | 6 | 0 | 1 | 112 | 1 | 112 | 3.79e-77 | 223 |
MS.gene56696.t1 | MTR_0699s0010 | 93.750 | 112 | 7 | 0 | 1 | 112 | 1 | 112 | 1.49e-76 | 221 |
MS.gene56696.t1 | MTR_5g081705 | 100.000 | 99 | 0 | 0 | 1 | 99 | 26 | 124 | 3.59e-69 | 203 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56696.t1 | AT1G74270 | 88.393 | 112 | 13 | 0 | 1 | 112 | 1 | 112 | 9.66e-73 | 212 |
MS.gene56696.t1 | AT1G07070 | 87.500 | 112 | 14 | 0 | 1 | 112 | 1 | 112 | 9.87e-73 | 212 |
MS.gene56696.t1 | AT3G55750 | 89.189 | 111 | 12 | 0 | 2 | 112 | 1 | 111 | 6.67e-72 | 209 |
MS.gene56696.t1 | AT1G41880 | 88.288 | 111 | 13 | 0 | 2 | 112 | 1 | 111 | 9.58e-72 | 209 |
MS.gene56696.t1 | AT1G41880 | 88.288 | 111 | 13 | 0 | 2 | 112 | 1 | 111 | 9.58e-72 | 209 |
Find 45 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAAAGAATTACCATTGATTT+TGG | 0.162742 | 5.1:-63881386 | None:intergenic |
ACACCAATCAAAATGGTTAA+AGG | 0.309838 | 5.1:+63880348 | None:intergenic |
TATGTCAGGGGTACAGTTCT+TGG | 0.323600 | 5.1:+63880537 | MS.gene56696:CDS |
GAAGCCACTATCGCTGCATT+TGG | 0.347443 | 5.1:+63881297 | MS.gene56696:CDS |
ATTTGTTTGTGCAGGGAGCC+AGG | 0.348132 | 5.1:+63881479 | MS.gene56696:intron |
TTGTAATCAGGCTTTATGTC+AGG | 0.353861 | 5.1:+63880523 | MS.gene56696:intron |
AAGCCACTATCGCTGCATTT+GGG | 0.371781 | 5.1:+63881298 | MS.gene56696:CDS |
ATGTATCCAAGCAATATATA+AGG | 0.407008 | 5.1:+63881514 | MS.gene56696:CDS |
AAATTACCTTATATATTGCT+TGG | 0.412163 | 5.1:-63881520 | None:intergenic |
ATCTGAACAAGAGAGGTGTT+TGG | 0.416693 | 5.1:-63881188 | None:intergenic |
GACGACAAGGAGAACGTATC+AGG | 0.417479 | 5.1:+63880370 | MS.gene56696:CDS |
GAGGAGGTTGCATGGTATGC+TGG | 0.417733 | 5.1:+63881230 | MS.gene56696:CDS |
GCATTTGGGGCAAGGTTACC+AGG | 0.451709 | 5.1:+63881312 | MS.gene56696:CDS |
TCTGAACAAGAGAGGTGTTT+GGG | 0.453404 | 5.1:-63881187 | None:intergenic |
TGCCCCAAATGCAGCGATAG+TGG | 0.453767 | 5.1:-63881301 | None:intergenic |
GTTTGGGTATTGATTTACCT+TGG | 0.466066 | 5.1:-63881171 | None:intergenic |
ATGGTATGCTGGGAAGAAAT+TGG | 0.469927 | 5.1:+63881241 | MS.gene56696:CDS |
GCTTCCATCCTTCTTCACCT+TGG | 0.472167 | 5.1:-63881279 | None:intergenic |
CTATCGCTGCATTTGGGGCA+AGG | 0.487554 | 5.1:+63881304 | MS.gene56696:CDS |
ACCTCTCTTGTTCAGATCGA+GGG | 0.499812 | 5.1:+63881194 | MS.gene56696:CDS |
ATACCATGCAACCTCCTCCT+TGG | 0.519241 | 5.1:-63881225 | None:intergenic |
GCCACTGTTACCATGAGGCC+TGG | 0.523824 | 5.1:-63881330 | None:intergenic |
AGGAGGTTGCATGGTATGCT+GGG | 0.527652 | 5.1:+63881231 | MS.gene56696:CDS |
TGTAATCAGGCTTTATGTCA+GGG | 0.533103 | 5.1:+63880524 | MS.gene56696:intron |
TTTGTTTGTGCAGGGAGCCA+GGG | 0.534698 | 5.1:+63881480 | MS.gene56696:intron |
TTACAAGGCCAAGGTGAAGA+AGG | 0.537680 | 5.1:+63881271 | MS.gene56696:CDS |
TAACCTACCACCAAAATCAA+TGG | 0.539094 | 5.1:+63881376 | MS.gene56696:CDS |
GGCATACATTTACAAGGCCA+AGG | 0.547418 | 5.1:+63881262 | MS.gene56696:CDS |
GAAATTGGCATACATTTACA+AGG | 0.562532 | 5.1:+63881256 | MS.gene56696:CDS |
GGCAAGGTTACCAGGCCTCA+TGG | 0.565570 | 5.1:+63881320 | MS.gene56696:CDS |
GTAATGTTGTTATAGGTCCA+AGG | 0.573819 | 5.1:+63881154 | MS.gene56696:intron |
ATACATAAATACTCTAACCC+TGG | 0.583670 | 5.1:-63881497 | None:intergenic |
AAGGCCAAGGTGAAGAAGGA+TGG | 0.591334 | 5.1:+63881275 | MS.gene56696:CDS |
CACCTCTCTTGTTCAGATCG+AGG | 0.592183 | 5.1:+63881193 | MS.gene56696:CDS |
GTAATCAGGCTTTATGTCAG+GGG | 0.604013 | 5.1:+63880525 | MS.gene56696:intron |
ACACCAAGGAGGAGGTTGCA+TGG | 0.606757 | 5.1:+63881222 | MS.gene56696:CDS |
AGCCACTATCGCTGCATTTG+GGG | 0.617770 | 5.1:+63881299 | MS.gene56696:CDS |
GGTTAGACTTGAACTTTGCG+CGG | 0.621246 | 5.1:-63881358 | None:intergenic |
CCTCTCTTGTTCAGATCGAG+GGG | 0.637714 | 5.1:+63881195 | MS.gene56696:CDS |
GTACAGTTCTTGGATACAAG+AGG | 0.641528 | 5.1:+63880547 | MS.gene56696:CDS |
CCCCTCGATCTGAACAAGAG+AGG | 0.655801 | 5.1:-63881195 | None:intergenic |
ACCAGGCCTCATGGTAACAG+TGG | 0.661908 | 5.1:+63881329 | MS.gene56696:CDS |
AAAATGGTTAAAGGACGACA+AGG | 0.679088 | 5.1:+63880357 | None:intergenic |
CTCTCTTGTTCAGATCGAGG+GGG | 0.711001 | 5.1:+63881196 | MS.gene56696:CDS |
ACAATGCCACTGTTACCATG+AGG | 0.746625 | 5.1:-63881335 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATTAAATCTAATTTGTTT+GGG | + | chr5.1:63880663-63880682 | MS.gene56696:intron | 10.0% |
!!! | AATGTTGTTATTTTGATTTT+GGG | + | chr5.1:63880499-63880518 | MS.gene56696:intron | 15.0% |
!!! | AATTCTTTAAGACATTTAAA+TGG | + | chr5.1:63881400-63881419 | MS.gene56696:intron | 15.0% |
!!! | CTAATTAAATCTAATTTGTT+TGG | + | chr5.1:63880662-63880681 | MS.gene56696:intron | 15.0% |
!!! | TAATGTTGTTATTTTGATTT+TGG | + | chr5.1:63880498-63880517 | MS.gene56696:intron | 15.0% |
!! | TAGATGAACAATTATATACT+TGG | - | chr5.1:63881075-63881094 | None:intergenic | 20.0% |
!!! | AACTAAATGATTACTGATTT+GGG | + | chr5.1:63880999-63881018 | MS.gene56696:intron | 20.0% |
!!! | ATTTTTTATTGAGGATACAT+TGG | - | chr5.1:63880912-63880931 | None:intergenic | 20.0% |
!!! | TAAAGAATTACCATTGATTT+TGG | - | chr5.1:63881389-63881408 | None:intergenic | 20.0% |
!!! | TTGGGTATTATTTTTTATTG+AGG | - | chr5.1:63880921-63880940 | None:intergenic | 20.0% |
!!! | TTTGGGTATTATTTTTTGTA+TGG | + | chr5.1:63881016-63881035 | MS.gene56696:intron | 20.0% |
!!! | TTTTTTATTGAGGATACATT+GGG | - | chr5.1:63880911-63880930 | None:intergenic | 20.0% |
! | ACAAACACAAATTAAAAGCT+GGG | - | chr5.1:63880834-63880853 | None:intergenic | 25.0% |
! | GATTATTTGTGCTAAGAAAT+TGG | + | chr5.1:63881132-63881151 | MS.gene56696:intron | 25.0% |
! | TTAAGAACCAATACTCAATT+TGG | + | chr5.1:63880865-63880884 | MS.gene56696:intron | 25.0% |
!! | GAACTAAATGATTACTGATT+TGG | + | chr5.1:63880998-63881017 | MS.gene56696:intron | 25.0% |
!!! | ATGTTTAATGTTGTTTTAGC+TGG | + | chr5.1:63880750-63880769 | MS.gene56696:intron | 25.0% |
!!! | GAAATTGGTAATGTTGTTAT+AGG | + | chr5.1:63881147-63881166 | MS.gene56696:intron | 25.0% |
!!! | TTTATGGTTTCTGAAAGTTT+TGG | + | chr5.1:63881451-63881470 | MS.gene56696:intron | 25.0% |
!!! | TTTGATTTTGATGTTGATCT+GGG | + | chr5.1:63881101-63881120 | MS.gene56696:intron | 25.0% |
!!! | TTTTGATTTTGATGTTGATC+TGG | + | chr5.1:63881100-63881119 | MS.gene56696:intron | 25.0% |
ATACATAAATACTCTAACCC+TGG | - | chr5.1:63881500-63881519 | None:intergenic | 30.0% | |
CACAAACACAAATTAAAAGC+TGG | - | chr5.1:63880835-63880854 | None:intergenic | 30.0% | |
GAAATTGGCATACATTTACA+AGG | + | chr5.1:63881256-63881275 | MS.gene56696:CDS | 30.0% | |
GCTGTATTTGATGTATTCTT+GGG | + | chr5.1:63880606-63880625 | MS.gene56696:intron | 30.0% | |
GTTAAACGAAATAGATCGAA+GGG | - | chr5.1:63880408-63880427 | None:intergenic | 30.0% | |
TGCTGTATTTGATGTATTCT+TGG | + | chr5.1:63880605-63880624 | MS.gene56696:intron | 30.0% | |
TGTTAAACGAAATAGATCGA+AGG | - | chr5.1:63880409-63880428 | None:intergenic | 30.0% | |
TTCAGAAACCATAAAACAGT+TGG | - | chr5.1:63881446-63881465 | None:intergenic | 30.0% | |
! | TCTTTTCACCAACTGTTTTA+TGG | + | chr5.1:63881435-63881454 | MS.gene56696:intron | 30.0% |
!!! | AGAATTACCATTGATTTTGG+TGG | - | chr5.1:63881386-63881405 | None:intergenic | 30.0% |
!!! | TTGATTTTGGGTTTGTAATC+AGG | + | chr5.1:63880511-63880530 | MS.gene56696:intron | 30.0% |
GTAATGTTGTTATAGGTCCA+AGG | + | chr5.1:63881154-63881173 | MS.gene56696:intron | 35.0% | |
TAACCTACCACCAAAATCAA+TGG | + | chr5.1:63881376-63881395 | MS.gene56696:CDS | 35.0% | |
TGAAGGACCAAATTGAGTAT+TGG | - | chr5.1:63880875-63880894 | None:intergenic | 35.0% | |
TTGGTCCTTCACAATATTTG+CGG | + | chr5.1:63880884-63880903 | MS.gene56696:intron | 35.0% | |
! | TGTAATCAGGCTTTATGTCA+GGG | + | chr5.1:63880524-63880543 | MS.gene56696:intron | 35.0% |
! | TTGTAATCAGGCTTTATGTC+AGG | + | chr5.1:63880523-63880542 | MS.gene56696:intron | 35.0% |
!! | GTTTGGGTATTGATTTACCT+TGG | - | chr5.1:63881174-63881193 | None:intergenic | 35.0% |
!!! | TTACCATTGATTTTGGTGGT+AGG | - | chr5.1:63881382-63881401 | None:intergenic | 35.0% |
ATGGTATGCTGGGAAGAAAT+TGG | + | chr5.1:63881241-63881260 | MS.gene56696:CDS | 40.0% | |
GTACAGTTCTTGGATACAAG+AGG | + | chr5.1:63880547-63880566 | MS.gene56696:CDS | 40.0% | |
TCTAGACTCATCATCACAAG+CGG | - | chr5.1:63880980-63880999 | None:intergenic | 40.0% | |
TGGTCCTTCACAATATTTGC+GGG | + | chr5.1:63880885-63880904 | MS.gene56696:intron | 40.0% | |
! | GTAATCAGGCTTTATGTCAG+GGG | + | chr5.1:63880525-63880544 | MS.gene56696:intron | 40.0% |
!! | ATCTGAACAAGAGAGGTGTT+TGG | - | chr5.1:63881191-63881210 | None:intergenic | 40.0% |
!! | GATAATGCTGGGACTAGTTT+GGG | - | chr5.1:63880939-63880958 | None:intergenic | 40.0% |
!! | GGTGTTGATTTGTTTGTGCA+GGG | + | chr5.1:63881472-63881491 | MS.gene56696:intron | 40.0% |
!! | TCTGAACAAGAGAGGTGTTT+GGG | - | chr5.1:63881190-63881209 | None:intergenic | 40.0% |
!! | TGATAATGCTGGGACTAGTT+TGG | - | chr5.1:63880940-63880959 | None:intergenic | 40.0% |
!! | TGGTGTTGATTTGTTTGTGC+AGG | + | chr5.1:63881471-63881490 | MS.gene56696:intron | 40.0% |
AAGCCACTATCGCTGCATTT+GGG | + | chr5.1:63881298-63881317 | MS.gene56696:CDS | 45.0% | |
ACAATGCCACTGTTACCATG+AGG | - | chr5.1:63881338-63881357 | None:intergenic | 45.0% | |
ACCTCTCTTGTTCAGATCGA+GGG | + | chr5.1:63881194-63881213 | MS.gene56696:CDS | 45.0% | |
GGCATACATTTACAAGGCCA+AGG | + | chr5.1:63881262-63881281 | MS.gene56696:CDS | 45.0% | |
GGTTAGACTTGAACTTTGCG+CGG | - | chr5.1:63881361-63881380 | None:intergenic | 45.0% | |
TCCCAGCATTATCACAGTAC+AGG | + | chr5.1:63880946-63880965 | MS.gene56696:intron | 45.0% | |
TTACAAGGCCAAGGTGAAGA+AGG | + | chr5.1:63881271-63881290 | MS.gene56696:CDS | 45.0% | |
! | GCCTGTACTGTGATAATGCT+GGG | - | chr5.1:63880950-63880969 | None:intergenic | 45.0% |
! | TATGTCAGGGGTACAGTTCT+TGG | + | chr5.1:63880537-63880556 | MS.gene56696:CDS | 45.0% |
! | TGCCTGTACTGTGATAATGC+TGG | - | chr5.1:63880951-63880970 | None:intergenic | 45.0% |
AAGGCCAAGGTGAAGAAGGA+TGG | + | chr5.1:63881275-63881294 | MS.gene56696:CDS | 50.0% | |
AGCCACTATCGCTGCATTTG+GGG | + | chr5.1:63881299-63881318 | MS.gene56696:CDS | 50.0% | |
AGGAGGTTGCATGGTATGCT+GGG | + | chr5.1:63881231-63881250 | MS.gene56696:CDS | 50.0% | |
ATACCATGCAACCTCCTCCT+TGG | - | chr5.1:63881228-63881247 | None:intergenic | 50.0% | |
ATTTGTTTGTGCAGGGAGCC+AGG | + | chr5.1:63881479-63881498 | MS.gene56696:intron | 50.0% | |
CACCTCTCTTGTTCAGATCG+AGG | + | chr5.1:63881193-63881212 | MS.gene56696:CDS | 50.0% | |
CCTCTCTTGTTCAGATCGAG+GGG | + | chr5.1:63881195-63881214 | MS.gene56696:CDS | 50.0% | |
CTCTCTTGTTCAGATCGAGG+GGG | + | chr5.1:63881196-63881215 | MS.gene56696:CDS | 50.0% | |
GAAGCCACTATCGCTGCATT+TGG | + | chr5.1:63881297-63881316 | MS.gene56696:CDS | 50.0% | |
GACGACAAGGAGAACGTATC+AGG | + | chr5.1:63880370-63880389 | MS.gene56696:CDS | 50.0% | |
GCTTCCATCCTTCTTCACCT+TGG | - | chr5.1:63881282-63881301 | None:intergenic | 50.0% | |
TGGGCCCGCAAATATTGTGA+AGG | - | chr5.1:63880892-63880911 | None:intergenic | 50.0% | |
TTTGTTTGTGCAGGGAGCCA+GGG | + | chr5.1:63881480-63881499 | MS.gene56696:intron | 50.0% | |
ACACCAAGGAGGAGGTTGCA+TGG | + | chr5.1:63881222-63881241 | MS.gene56696:CDS | 55.0% | |
ACCAGGCCTCATGGTAACAG+TGG | + | chr5.1:63881329-63881348 | MS.gene56696:CDS | 55.0% | |
CCCCTCGATCTGAACAAGAG+AGG | - | chr5.1:63881198-63881217 | None:intergenic | 55.0% | |
GAGGAGGTTGCATGGTATGC+TGG | + | chr5.1:63881230-63881249 | MS.gene56696:CDS | 55.0% | |
GATCGAGGGGGTAAACACCA+AGG | + | chr5.1:63881208-63881227 | MS.gene56696:CDS | 55.0% | |
TGCCCCAAATGCAGCGATAG+TGG | - | chr5.1:63881304-63881323 | None:intergenic | 55.0% | |
! | CTATCGCTGCATTTGGGGCA+AGG | + | chr5.1:63881304-63881323 | MS.gene56696:CDS | 55.0% |
! | GCATTTGGGGCAAGGTTACC+AGG | + | chr5.1:63881312-63881331 | MS.gene56696:CDS | 55.0% |
CGAGGGGGTAAACACCAAGG+AGG | + | chr5.1:63881211-63881230 | MS.gene56696:CDS | 60.0% | |
GCCACTGTTACCATGAGGCC+TGG | - | chr5.1:63881333-63881352 | None:intergenic | 60.0% | |
GGCAAGGTTACCAGGCCTCA+TGG | + | chr5.1:63881320-63881339 | MS.gene56696:CDS | 60.0% | |
GGGGGTAAACACCAAGGAGG+AGG | + | chr5.1:63881214-63881233 | MS.gene56696:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 63880360 | 63881534 | 63880360 | ID=MS.gene56696 |
chr5.1 | mRNA | 63880360 | 63881534 | 63880360 | ID=MS.gene56696.t1;Parent=MS.gene56696 |
chr5.1 | exon | 63880360 | 63880391 | 63880360 | ID=MS.gene56696.t1.exon1;Parent=MS.gene56696.t1 |
chr5.1 | CDS | 63880360 | 63880391 | 63880360 | ID=cds.MS.gene56696.t1;Parent=MS.gene56696.t1 |
chr5.1 | exon | 63880533 | 63880568 | 63880533 | ID=MS.gene56696.t1.exon2;Parent=MS.gene56696.t1 |
chr5.1 | CDS | 63880533 | 63880568 | 63880533 | ID=cds.MS.gene56696.t1;Parent=MS.gene56696.t1 |
chr5.1 | exon | 63881169 | 63881397 | 63881169 | ID=MS.gene56696.t1.exon3;Parent=MS.gene56696.t1 |
chr5.1 | CDS | 63881169 | 63881397 | 63881169 | ID=cds.MS.gene56696.t1;Parent=MS.gene56696.t1 |
chr5.1 | exon | 63881493 | 63881534 | 63881493 | ID=MS.gene56696.t1.exon4;Parent=MS.gene56696.t1 |
chr5.1 | CDS | 63881493 | 63881534 | 63881493 | ID=cds.MS.gene56696.t1;Parent=MS.gene56696.t1 |
Gene Sequence |
Protein sequence |