Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23059.t1 | XP_013441621.1 | 100 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 1.10E-57 | 232.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23059.t1 | Q9LMK0 | 91.1 | 112 | 10 | 0 | 1 | 112 | 1 | 112 | 9.1e-56 | 217.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23059.t1 | I3T9M0 | 100.0 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 8.2e-58 | 232.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene23059 | 0.849849 | 2.48E-60 | -1.69E-46 |
| MS.gene049340 | MS.gene23059 | 0.809295 | 2.03E-50 | -1.69E-46 |
| MS.gene049341 | MS.gene23059 | 0.828007 | 1.14E-54 | -1.69E-46 |
| MS.gene049580 | MS.gene23059 | 0.801691 | 7.99E-49 | -1.69E-46 |
| MS.gene049756 | MS.gene23059 | 0.810682 | 1.02E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene23059 | 0.921916 | 1.93E-88 | -1.69E-46 |
| MS.gene050290 | MS.gene23059 | 0.810861 | 9.34E-51 | -1.69E-46 |
| MS.gene050303 | MS.gene23059 | 0.847074 | 1.46E-59 | -1.69E-46 |
| MS.gene050320 | MS.gene23059 | 0.855945 | 4.49E-62 | -1.69E-46 |
| MS.gene050752 | MS.gene23059 | 0.826527 | 2.58E-54 | -1.69E-46 |
| MS.gene050838 | MS.gene23059 | 0.857654 | 1.41E-62 | -1.69E-46 |
| MS.gene050916 | MS.gene23059 | 0.853795 | 1.89E-61 | -1.69E-46 |
| MS.gene050955 | MS.gene23059 | 0.807539 | 4.81E-50 | -1.69E-46 |
| MS.gene051063 | MS.gene23059 | 0.853107 | 2.97E-61 | -1.69E-46 |
| MS.gene051241 | MS.gene23059 | 0.829492 | 4.99E-55 | -1.69E-46 |
| MS.gene051243 | MS.gene23059 | 0.818535 | 1.86E-52 | -1.69E-46 |
| MS.gene051245 | MS.gene23059 | 0.83549 | 1.63E-56 | -1.69E-46 |
| MS.gene051328 | MS.gene23059 | 0.82415 | 9.43E-54 | -1.69E-46 |
| MS.gene051330 | MS.gene23059 | 0.889002 | 3.58E-73 | -1.69E-46 |
| MS.gene05134 | MS.gene23059 | 0.854126 | 1.51E-61 | -1.69E-46 |
| MS.gene051451 | MS.gene23059 | 0.852873 | 3.47E-61 | -1.69E-46 |
| MS.gene051633 | MS.gene23059 | 0.848194 | 7.16E-60 | -1.69E-46 |
| MS.gene051746 | MS.gene23059 | 0.8994 | 2.06E-77 | -1.69E-46 |
| MS.gene051748 | MS.gene23059 | 0.907082 | 7.44E-81 | -1.69E-46 |
| MS.gene051756 | MS.gene23059 | 0.848335 | 6.55E-60 | -1.69E-46 |
| MS.gene051757 | MS.gene23059 | 0.829817 | 4.16E-55 | -1.69E-46 |
| MS.gene051850 | MS.gene23059 | 0.860622 | 1.82E-63 | -1.69E-46 |
| MS.gene05188 | MS.gene23059 | 0.808868 | 2.51E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene23059 | 0.963774 | 1.69E-122 | -1.69E-46 |
| MS.gene052133 | MS.gene23059 | 0.825311 | 5.02E-54 | -1.69E-46 |
| MS.gene052202 | MS.gene23059 | 0.822604 | 2.17E-53 | -1.69E-46 |
| MS.gene052286 | MS.gene23059 | 0.848949 | 4.42E-60 | -1.69E-46 |
| MS.gene052302 | MS.gene23059 | 0.873401 | 1.51E-67 | -1.69E-46 |
| MS.gene052376 | MS.gene23059 | 0.868189 | 7.86E-66 | -1.69E-46 |
| MS.gene052856 | MS.gene23059 | 0.833357 | 5.59E-56 | -1.69E-46 |
| MS.gene052858 | MS.gene23059 | 0.801988 | 6.94E-49 | -1.69E-46 |
| MS.gene052879 | MS.gene23059 | 0.800352 | 1.50E-48 | -1.69E-46 |
| MS.gene052947 | MS.gene23059 | 0.909891 | 3.45E-82 | -1.69E-46 |
| MS.gene053109 | MS.gene23059 | 0.862122 | 6.34E-64 | -1.69E-46 |
| MS.gene053437 | MS.gene23059 | 0.806853 | 6.72E-50 | -1.69E-46 |
| MS.gene053952 | MS.gene23059 | 0.866062 | 3.75E-65 | -1.69E-46 |
| MS.gene054403 | MS.gene23059 | 0.826844 | 2.17E-54 | -1.69E-46 |
| MS.gene054937 | MS.gene23059 | 0.847255 | 1.30E-59 | -1.69E-46 |
| MS.gene055162 | MS.gene23059 | 0.835795 | 1.36E-56 | -1.69E-46 |
| MS.gene055174 | MS.gene23059 | 0.806085 | 9.76E-50 | -1.69E-46 |
| MS.gene055424 | MS.gene23059 | 0.875774 | 2.36E-68 | -1.69E-46 |
| MS.gene055441 | MS.gene23059 | 0.812495 | 4.12E-51 | -1.69E-46 |
| MS.gene055555 | MS.gene23059 | 0.808178 | 3.52E-50 | -1.69E-46 |
| MS.gene055591 | MS.gene23059 | -0.827784 | 1.29E-54 | -1.69E-46 |
| MS.gene055808 | MS.gene23059 | 0.841189 | 5.52E-58 | -1.69E-46 |
| MS.gene056075 | MS.gene23059 | 0.837785 | 4.23E-57 | -1.69E-46 |
| MS.gene056091 | MS.gene23059 | 0.848976 | 4.35E-60 | -1.69E-46 |
| MS.gene056432 | MS.gene23059 | 0.837967 | 3.80E-57 | -1.69E-46 |
| MS.gene056580 | MS.gene23059 | 0.82812 | 1.07E-54 | -1.69E-46 |
| MS.gene056601 | MS.gene23059 | 0.883717 | 3.54E-71 | -1.69E-46 |
| MS.gene056631 | MS.gene23059 | 0.916654 | 1.37E-85 | -1.69E-46 |
| MS.gene056760 | MS.gene23059 | 0.845584 | 3.71E-59 | -1.69E-46 |
| MS.gene056986 | MS.gene23059 | 0.808218 | 3.45E-50 | -1.69E-46 |
| MS.gene057057 | MS.gene23059 | 0.850507 | 1.62E-60 | -1.69E-46 |
| MS.gene057079 | MS.gene23059 | 0.834658 | 2.64E-56 | -1.69E-46 |
| MS.gene057094 | MS.gene23059 | 0.89855 | 4.75E-77 | -1.69E-46 |
| MS.gene057140 | MS.gene23059 | 0.861577 | 9.30E-64 | -1.69E-46 |
| MS.gene057206 | MS.gene23059 | 0.809117 | 2.22E-50 | -1.69E-46 |
| MS.gene057234 | MS.gene23059 | 0.89036 | 1.06E-73 | -1.69E-46 |
| MS.gene057705 | MS.gene23059 | 0.866491 | 2.74E-65 | -1.69E-46 |
| MS.gene05781 | MS.gene23059 | 0.814824 | 1.27E-51 | -1.69E-46 |
| MS.gene05795 | MS.gene23059 | 0.812491 | 4.13E-51 | -1.69E-46 |
| MS.gene057999 | MS.gene23059 | 0.823789 | 1.15E-53 | -1.69E-46 |
| MS.gene058054 | MS.gene23059 | 0.804587 | 2.01E-49 | -1.69E-46 |
| MS.gene058055 | MS.gene23059 | 0.865464 | 5.80E-65 | -1.69E-46 |
| MS.gene058074 | MS.gene23059 | 0.814368 | 1.60E-51 | -1.69E-46 |
| MS.gene058084 | MS.gene23059 | 0.82999 | 3.78E-55 | -1.69E-46 |
| MS.gene05809 | MS.gene23059 | 0.818518 | 1.88E-52 | -1.69E-46 |
| MS.gene058182 | MS.gene23059 | 0.821641 | 3.62E-53 | -1.69E-46 |
| MS.gene058238 | MS.gene23059 | 0.894949 | 1.52E-75 | -1.69E-46 |
| MS.gene058906 | MS.gene23059 | 0.903473 | 3.34E-79 | -1.69E-46 |
| MS.gene059830 | MS.gene23059 | 0.807336 | 5.31E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene23059 | 0.863344 | 2.66E-64 | -1.69E-46 |
| MS.gene06001 | MS.gene23059 | 0.943206 | 1.83E-102 | -1.69E-46 |
| MS.gene06011 | MS.gene23059 | 0.83518 | 1.95E-56 | -1.69E-46 |
| MS.gene060429 | MS.gene23059 | 0.84805 | 7.84E-60 | -1.69E-46 |
| MS.gene060463 | MS.gene23059 | 0.817193 | 3.74E-52 | -1.69E-46 |
| MS.gene060465 | MS.gene23059 | 0.820275 | 7.48E-53 | -1.69E-46 |
| MS.gene060586 | MS.gene23059 | 0.825897 | 3.65E-54 | -1.69E-46 |
| MS.gene060619 | MS.gene23059 | 0.817724 | 2.84E-52 | -1.69E-46 |
| MS.gene060763 | MS.gene23059 | 0.807467 | 4.98E-50 | -1.69E-46 |
| MS.gene060917 | MS.gene23059 | 0.841245 | 5.34E-58 | -1.69E-46 |
| MS.gene061145 | MS.gene23059 | 0.846844 | 1.68E-59 | -1.69E-46 |
| MS.gene06118 | MS.gene23059 | 0.800849 | 1.19E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene061905 | MS.gene23059 | PPI |
| MS.gene23059 | MS.gene64512 | PPI |
| MS.gene007067 | MS.gene23059 | PPI |
| MS.gene070073 | MS.gene23059 | PPI |
| MS.gene007066 | MS.gene23059 | PPI |
| MS.gene39294 | MS.gene23059 | PPI |
| MS.gene09845 | MS.gene23059 | PPI |
| MS.gene018553 | MS.gene23059 | PPI |
| MS.gene23059 | MS.gene80639 | PPI |
| MS.gene45646 | MS.gene23059 | PPI |
| MS.gene051903 | MS.gene23059 | PPI |
| MS.gene051904 | MS.gene23059 | PPI |
| MS.gene23058 | MS.gene23059 | PPI |
| MS.gene23059 | MS.gene022752 | PPI |
| MS.gene020215 | MS.gene23059 | PPI |
| MS.gene56696 | MS.gene23059 | PPI |
| MS.gene29581 | MS.gene23059 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23059.t1 | MTR_0699s0020 | 100.000 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 2.57e-79 | 228 |
| MS.gene23059.t1 | MTR_0699s0010 | 99.107 | 112 | 1 | 0 | 1 | 112 | 1 | 112 | 1.25e-78 | 226 |
| MS.gene23059.t1 | MTR_5g081705 | 94.643 | 112 | 6 | 0 | 1 | 112 | 26 | 137 | 5.74e-77 | 223 |
| MS.gene23059.t1 | MTR_5g081705 | 94.949 | 99 | 5 | 0 | 1 | 99 | 26 | 124 | 2.98e-67 | 198 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23059.t1 | AT1G74270 | 91.964 | 112 | 9 | 0 | 1 | 112 | 1 | 112 | 6.63e-74 | 214 |
| MS.gene23059.t1 | AT1G07070 | 91.071 | 112 | 10 | 0 | 1 | 112 | 1 | 112 | 7.40e-74 | 214 |
| MS.gene23059.t1 | AT3G55750 | 87.387 | 111 | 14 | 0 | 2 | 112 | 1 | 111 | 4.97e-71 | 207 |
| MS.gene23059.t1 | AT1G41880 | 86.486 | 111 | 15 | 0 | 2 | 112 | 1 | 111 | 7.54e-71 | 207 |
| MS.gene23059.t1 | AT1G41880 | 86.486 | 111 | 15 | 0 | 2 | 112 | 1 | 111 | 7.54e-71 | 207 |
Find 45 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAAGATTTGATTTGAATT+TGG | 0.236788 | 7.2:+7229866 | None:intergenic |
| TGGTGTTCACTCCTTCAATT+TGG | 0.242520 | 7.2:+7230024 | None:intergenic |
| GTAAATTATTACCATTGATT+TGG | 0.266957 | 7.2:+7229842 | None:intergenic |
| TAAATTATTACCATTGATTT+GGG | 0.343670 | 7.2:+7229843 | None:intergenic |
| GCCCCATATGCAACGGTAAT+GGG | 0.353096 | 7.2:+7229929 | None:intergenic |
| GAACCCATTACCGTTGCATA+TGG | 0.373177 | 7.2:-7229932 | MS.gene23059:CDS |
| GGTTTACCTCATATGTTACT+TGG | 0.390121 | 7.2:+7229720 | None:intergenic |
| CCAGAGATGTGTTTGGGTAC+TGG | 0.398125 | 7.2:+7230048 | None:intergenic |
| TTGGTATGCCGGCAAGAAAA+TGG | 0.403183 | 7.2:-7229988 | MS.gene23059:CDS |
| ATTTGGACCAGAGATGTGTT+TGG | 0.405595 | 7.2:+7230041 | None:intergenic |
| GACGTCAAGGAGAGCGTGTC+AGG | 0.412439 | 7.2:-7231179 | MS.gene23059:intron |
| TTTGGACCAGAGATGTGTTT+GGG | 0.422500 | 7.2:+7230042 | None:intergenic |
| TGCCCCATATGCAACGGTAA+TGG | 0.448613 | 7.2:+7229928 | None:intergenic |
| AACCCATTACCGTTGCATAT+GGG | 0.460048 | 7.2:-7229931 | MS.gene23059:CDS |
| ACATCTCTGGTCCAAATTGA+AGG | 0.462436 | 7.2:-7230035 | MS.gene23059:CDS |
| TACGTGAGGGGTACAATCCT+TGG | 0.470557 | 7.2:-7230198 | MS.gene23059:CDS |
| GTACAATCCTTGGATACAAA+AGG | 0.498010 | 7.2:-7230188 | MS.gene23059:intron |
| ATACCAAGCTACCTCTTCCT+TGG | 0.508204 | 7.2:+7230004 | None:intergenic |
| GAAGAGGTAGCTTGGTATGC+CGG | 0.510952 | 7.2:-7229999 | MS.gene23059:CDS |
| GGTTCCGTTCTTCTTCACCT+TGG | 0.512346 | 7.2:+7229950 | None:intergenic |
| GTTTACCTCATATGTTACTT+GGG | 0.516767 | 7.2:+7229721 | None:intergenic |
| AAATCTTCCTCCCAAATCAA+TGG | 0.516979 | 7.2:-7229853 | MS.gene23059:intron |
| GTTTGGGTACTGGTTTACTT+TGG | 0.518411 | 7.2:+7230058 | None:intergenic |
| ACCCATTACCGTTGCATATG+GGG | 0.524799 | 7.2:-7229930 | MS.gene23059:CDS |
| GCATATGGGGCAAGGTTACA+AGG | 0.526923 | 7.2:-7229917 | MS.gene23059:CDS |
| CCAGTACCCAAACACATCTC+TGG | 0.530530 | 7.2:-7230048 | MS.gene23059:CDS |
| TTGTATTAGGCTTTACGTGA+GGG | 0.535618 | 7.2:-7230211 | MS.gene23059:intron |
| AGGAGTGAACACCAAGGAAG+AGG | 0.555068 | 7.2:-7230015 | MS.gene23059:CDS |
| ATGTACCCAAGTAACATATG+AGG | 0.563414 | 7.2:-7229726 | None:intergenic |
| GGCATATATCTACAAGGCCA+AGG | 0.574061 | 7.2:-7229967 | MS.gene23059:CDS |
| GGCAAGGTTACAAGGCCTCA+TGG | 0.577972 | 7.2:-7229909 | MS.gene23059:CDS |
| TTTGTATTAGGCTTTACGTG+AGG | 0.589429 | 7.2:-7230212 | MS.gene23059:intron |
| TTACCGTTGCATATGGGGCA+AGG | 0.593071 | 7.2:-7229925 | MS.gene23059:CDS |
| ACACCAAGGAAGAGGTAGCT+TGG | 0.593143 | 7.2:-7230007 | MS.gene23059:CDS |
| TGTATTAGGCTTTACGTGAG+GGG | 0.606295 | 7.2:-7230210 | MS.gene23059:intron |
| AAGATGGTGAAGGGACGTCA+AGG | 0.609822 | 7.2:-7231192 | MS.gene23059:CDS |
| TGCTGCTGTGAAGATGGTGA+AGG | 0.610958 | 7.2:-7231202 | None:intergenic |
| ATTATTACCATTGATTTGGG+AGG | 0.614066 | 7.2:+7229846 | None:intergenic |
| AAGGCCAAGGTGAAGAAGAA+CGG | 0.630167 | 7.2:-7229954 | MS.gene23059:CDS |
| GAAAATGGCATATATCTACA+AGG | 0.630318 | 7.2:-7229973 | MS.gene23059:CDS |
| GCTGCTGTGAAGATGGTGAA+GGG | 0.632435 | 7.2:-7231201 | None:intergenic |
| TAACCTTGCCCCATATGCAA+CGG | 0.648972 | 7.2:+7229922 | None:intergenic |
| ACAAGGCCTCATGGTAACAG+TGG | 0.683556 | 7.2:-7229900 | MS.gene23059:CDS |
| ACAATACCACTGTTACCATG+AGG | 0.737809 | 7.2:+7229894 | None:intergenic |
| AATTGAAGGAGTGAACACCA+AGG | 0.776962 | 7.2:-7230021 | MS.gene23059:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATGAAAATACAAATAAAAA+TGG | + | chr7.2:7229779-7229798 | None:intergenic | 15.0% |
| !! | TAATAAGAATAAAAATGTGT+TGG | + | chr7.2:7231100-7231119 | None:intergenic | 15.0% |
| !! | TATAGAAAAGGAAAAAATAA+AGG | + | chr7.2:7230238-7230257 | None:intergenic | 15.0% |
| !!! | TAAAGCTATTTTTATAGAAA+AGG | + | chr7.2:7230250-7230269 | None:intergenic | 15.0% |
| !!! | TAAATTATTACCATTGATTT+GGG | + | chr7.2:7231077-7231096 | None:intergenic | 15.0% |
| !!! | TATCATTGTTTTAATTCATT+TGG | - | chr7.2:7229838-7229857 | MS.gene23059:intron | 15.0% |
| !!! | TTTTGGTTTTATTTTTGTTA+GGG | - | chr7.2:7230479-7230498 | MS.gene23059:intron | 15.0% |
| !! | AAAAGACACAAAAACATATT+TGG | + | chr7.2:7230592-7230611 | None:intergenic | 20.0% |
| !! | AAATATAGCTGCTAAAAAAT+TGG | + | chr7.2:7230371-7230390 | None:intergenic | 20.0% |
| !! | AATATAGCTGCTAAAAAATT+GGG | + | chr7.2:7230370-7230389 | None:intergenic | 20.0% |
| !! | TTTCTTGTTCAATTTGTATT+AGG | - | chr7.2:7230693-7230712 | MS.gene23059:intron | 20.0% |
| !!! | ATTTTTGTTAGGGATTAAAT+TGG | - | chr7.2:7230489-7230508 | MS.gene23059:intron | 20.0% |
| !!! | CATCTGTTTTATTTTATGTT+TGG | - | chr7.2:7230768-7230787 | MS.gene23059:intron | 20.0% |
| !!! | CTTTTGGTTTTATTTTTGTT+AGG | - | chr7.2:7230478-7230497 | MS.gene23059:intron | 20.0% |
| !!! | GTAAATTATTACCATTGATT+TGG | + | chr7.2:7231078-7231097 | None:intergenic | 20.0% |
| !!! | TTTTTGTTAGGGATTAAATT+GGG | - | chr7.2:7230490-7230509 | MS.gene23059:intron | 20.0% |
| ! | TAGTCCAGTTATAAAAATGT+CGG | + | chr7.2:7230427-7230446 | None:intergenic | 25.0% |
| !!! | AGGAAGATTTGATTTGAATT+TGG | + | chr7.2:7231054-7231073 | None:intergenic | 25.0% |
| AAAAAAAGAGAGAGAGAAGT+AGG | + | chr7.2:7230140-7230159 | None:intergenic | 30.0% | |
| AAAATATTGTGGGACGAAAA+TGG | - | chr7.2:7230517-7230536 | MS.gene23059:intron | 30.0% | |
| AAATATTGTGGGACGAAAAT+GGG | - | chr7.2:7230518-7230537 | MS.gene23059:intron | 30.0% | |
| ACAAAAATGAAATCTGAACC+TGG | - | chr7.2:7230398-7230417 | MS.gene23059:intron | 30.0% | |
| ACATTAGCATGCAGTTAATA+AGG | - | chr7.2:7229885-7229904 | MS.gene23059:CDS | 30.0% | |
| AGTCCAGTTATAAAAATGTC+GGG | + | chr7.2:7230426-7230445 | None:intergenic | 30.0% | |
| AGTCTCACAAAAACTTATGT+TGG | + | chr7.2:7230033-7230052 | None:intergenic | 30.0% | |
| CATTAGCATGCAGTTAATAA+GGG | - | chr7.2:7229886-7229905 | MS.gene23059:CDS | 30.0% | |
| GAAAATGGCATATATCTACA+AGG | - | chr7.2:7230944-7230963 | MS.gene23059:intron | 30.0% | |
| ! | AAGTTTACCTTTTGTATCCA+AGG | + | chr7.2:7230739-7230758 | None:intergenic | 30.0% |
| ! | ATCACTCCACAAAGTATTAA+GGG | + | chr7.2:7230331-7230350 | None:intergenic | 30.0% |
| ! | GTTTGGTTTATGAAAATGTC+TGG | - | chr7.2:7230785-7230804 | MS.gene23059:intron | 30.0% |
| !! | ATTATTACCATTGATTTGGG+AGG | + | chr7.2:7231074-7231093 | None:intergenic | 30.0% |
| !! | GTTCAGATTTCATTTTTGTC+AGG | + | chr7.2:7230397-7230416 | None:intergenic | 30.0% |
| !!! | ATGCTATGAGCTGTTTTTAT+AGG | + | chr7.2:7230199-7230218 | None:intergenic | 30.0% |
| !!! | TTATCTTGACTTTTTGAGTG+TGG | - | chr7.2:7231136-7231155 | MS.gene23059:intron | 30.0% |
| AAATCTTCCTCCCAAATCAA+TGG | - | chr7.2:7231064-7231083 | MS.gene23059:intron | 35.0% | |
| AAATGTCTGGTTAGATGCTT+TGG | - | chr7.2:7230798-7230817 | MS.gene23059:intron | 35.0% | |
| AACATGCCCTTAATACTTTG+TGG | - | chr7.2:7230322-7230341 | MS.gene23059:intron | 35.0% | |
| AATTGGGTCGCAAAATATTG+TGG | - | chr7.2:7230506-7230525 | MS.gene23059:intron | 35.0% | |
| ACTGCATGCTAATGTTTGAA+TGG | + | chr7.2:7229880-7229899 | None:intergenic | 35.0% | |
| AGAACTTGTGAAAATCAGCT+GGG | + | chr7.2:7230108-7230127 | None:intergenic | 35.0% | |
| ATAGCTGCTAAAAAATTGGG+AGG | + | chr7.2:7230367-7230386 | None:intergenic | 35.0% | |
| ATTGGGTCGCAAAATATTGT+GGG | - | chr7.2:7230507-7230526 | MS.gene23059:intron | 35.0% | |
| CTCACAAAAACTTATGTTGG+TGG | + | chr7.2:7230030-7230049 | None:intergenic | 35.0% | |
| CTTAATACTTTGTGGAGTGA+TGG | - | chr7.2:7230330-7230349 | MS.gene23059:intron | 35.0% | |
| GTACAATCCTTGGATACAAA+AGG | - | chr7.2:7230729-7230748 | MS.gene23059:intron | 35.0% | |
| GTCCAGTTATAAAAATGTCG+GGG | + | chr7.2:7230425-7230444 | None:intergenic | 35.0% | |
| TCAAATAAGCCAATCCAAAC+AGG | + | chr7.2:7230001-7230020 | None:intergenic | 35.0% | |
| TCGCTAGTATGAATATCTCT+GGG | - | chr7.2:7230452-7230471 | MS.gene23059:intron | 35.0% | |
| TTGTATTAGGCTTTACGTGA+GGG | - | chr7.2:7230706-7230725 | MS.gene23059:intron | 35.0% | |
| TTTGTATTAGGCTTTACGTG+AGG | - | chr7.2:7230705-7230724 | MS.gene23059:intron | 35.0% | |
| ! | CAAAGTATTAAGGGCATGTT+TGG | + | chr7.2:7230322-7230341 | None:intergenic | 35.0% |
| ! | CATCACTCCACAAAGTATTA+AGG | + | chr7.2:7230332-7230351 | None:intergenic | 35.0% |
| ! | GTTTTTGTGAGACTGTTGTT+TGG | - | chr7.2:7230039-7230058 | MS.gene23059:CDS | 35.0% |
| !!! | GATATATGCCATTTTCTTGC+CGG | + | chr7.2:7230940-7230959 | None:intergenic | 35.0% |
| AAAATTGGGAGGACCAACAT+AGG | + | chr7.2:7230356-7230375 | None:intergenic | 40.0% | |
| AACCCATTACCGTTGCATAT+GGG | - | chr7.2:7230986-7231005 | MS.gene23059:intron | 40.0% | |
| AATTGAAGGAGTGAACACCA+AGG | - | chr7.2:7230896-7230915 | MS.gene23059:intron | 40.0% | |
| ACAATACCACTGTTACCATG+AGG | + | chr7.2:7231026-7231045 | None:intergenic | 40.0% | |
| ACATCTCTGGTCCAAATTGA+AGG | - | chr7.2:7230882-7230901 | MS.gene23059:intron | 40.0% | |
| ACTGATGTCTAATGCCTGTT+TGG | - | chr7.2:7229984-7230003 | MS.gene23059:CDS | 40.0% | |
| ATTTGGACCAGAGATGTGTT+TGG | + | chr7.2:7230879-7230898 | None:intergenic | 40.0% | |
| GAACTTGTGAAAACAGCTCA+TGG | - | chr7.2:7230063-7230082 | MS.gene23059:CDS | 40.0% | |
| GAGAACTTGTGAAAATCAGC+TGG | + | chr7.2:7230109-7230128 | None:intergenic | 40.0% | |
| GTCGCTAGTATGAATATCTC+TGG | - | chr7.2:7230451-7230470 | MS.gene23059:intron | 40.0% | |
| TGGTGTTCACTCCTTCAATT+TGG | + | chr7.2:7230896-7230915 | None:intergenic | 40.0% | |
| TGTATTAGGCTTTACGTGAG+GGG | - | chr7.2:7230707-7230726 | MS.gene23059:intron | 40.0% | |
| TGTCTAATGCCTGTTTGGAT+TGG | - | chr7.2:7229989-7230008 | MS.gene23059:CDS | 40.0% | |
| TTATAAAAATGTCGGGGACC+AGG | + | chr7.2:7230419-7230438 | None:intergenic | 40.0% | |
| TTTGGACCAGAGATGTGTTT+GGG | + | chr7.2:7230878-7230897 | None:intergenic | 40.0% | |
| ! | GTCCCCGACATTTTTATAAC+TGG | - | chr7.2:7230420-7230439 | MS.gene23059:intron | 40.0% |
| !! | GAATATCTCTGGGCTACTTT+TGG | - | chr7.2:7230462-7230481 | MS.gene23059:intron | 40.0% |
| !! | GTTTGGGTACTGGTTTACTT+TGG | + | chr7.2:7230862-7230881 | None:intergenic | 40.0% |
| AAGGCCAAGGTGAAGAAGAA+CGG | - | chr7.2:7230963-7230982 | MS.gene23059:intron | 45.0% | |
| ACCCATTACCGTTGCATATG+GGG | - | chr7.2:7230987-7231006 | MS.gene23059:intron | 45.0% | |
| ATACCAAGCTACCTCTTCCT+TGG | + | chr7.2:7230916-7230935 | None:intergenic | 45.0% | |
| GAACCCATTACCGTTGCATA+TGG | - | chr7.2:7230985-7231004 | MS.gene23059:intron | 45.0% | |
| GGCATATATCTACAAGGCCA+AGG | - | chr7.2:7230950-7230969 | MS.gene23059:intron | 45.0% | |
| TAACCTTGCCCCATATGCAA+CGG | + | chr7.2:7230998-7231017 | None:intergenic | 45.0% | |
| TTGAGTGTGGATGCATTGCA+GGG | - | chr7.2:7231149-7231168 | MS.gene23059:intron | 45.0% | |
| TTGGTATGCCGGCAAGAAAA+TGG | - | chr7.2:7230929-7230948 | MS.gene23059:intron | 45.0% | |
| TTTGAGTGTGGATGCATTGC+AGG | - | chr7.2:7231148-7231167 | MS.gene23059:intron | 45.0% | |
| ACAAGGCCTCATGGTAACAG+TGG | - | chr7.2:7231017-7231036 | MS.gene23059:intron | 50.0% | |
| ACACCAAGGAAGAGGTAGCT+TGG | - | chr7.2:7230910-7230929 | MS.gene23059:intron | 50.0% | |
| AGGAGTGAACACCAAGGAAG+AGG | - | chr7.2:7230902-7230921 | MS.gene23059:intron | 50.0% | |
| CCAGAGATGTGTTTGGGTAC+TGG | + | chr7.2:7230872-7230891 | None:intergenic | 50.0% | |
| CCAGTACCCAAACACATCTC+TGG | - | chr7.2:7230869-7230888 | MS.gene23059:intron | 50.0% | |
| GAAGAGGTAGCTTGGTATGC+CGG | - | chr7.2:7230918-7230937 | MS.gene23059:intron | 50.0% | |
| GCATATGGGGCAAGGTTACA+AGG | - | chr7.2:7231000-7231019 | MS.gene23059:intron | 50.0% | |
| GCCCCATATGCAACGGTAAT+GGG | + | chr7.2:7230991-7231010 | None:intergenic | 50.0% | |
| GGTTCCGTTCTTCTTCACCT+TGG | + | chr7.2:7230970-7230989 | None:intergenic | 50.0% | |
| TGCCCCATATGCAACGGTAA+TGG | + | chr7.2:7230992-7231011 | None:intergenic | 50.0% | |
| TGTGGAGTGATGGCCTATGT+TGG | - | chr7.2:7230340-7230359 | MS.gene23059:intron | 50.0% | |
| TTACCGTTGCATATGGGGCA+AGG | - | chr7.2:7230992-7231011 | MS.gene23059:intron | 50.0% | |
| ! | TACGTGAGGGGTACAATCCT+TGG | - | chr7.2:7230719-7230738 | MS.gene23059:intron | 50.0% |
| GGCAAGGTTACAAGGCCTCA+TGG | - | chr7.2:7231008-7231027 | MS.gene23059:intron | 55.0% | |
| ! | GACGTCAAGGAGAGCGTGTC+AGG | - | chr7.2:7229738-7229757 | MS.gene23059:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 7229728 | 7231211 | 7229728 | ID=MS.gene23059 |
| chr7.2 | mRNA | 7229728 | 7231211 | 7229728 | ID=MS.gene23059.t1;Parent=MS.gene23059 |
| chr7.2 | exon | 7231180 | 7231211 | 7231180 | ID=MS.gene23059.t1.exon1;Parent=MS.gene23059.t1 |
| chr7.2 | CDS | 7231180 | 7231211 | 7231180 | ID=cds.MS.gene23059.t1;Parent=MS.gene23059.t1 |
| chr7.2 | exon | 7230189 | 7230224 | 7230189 | ID=MS.gene23059.t1.exon2;Parent=MS.gene23059.t1 |
| chr7.2 | CDS | 7230189 | 7230224 | 7230189 | ID=cds.MS.gene23059.t1;Parent=MS.gene23059.t1 |
| chr7.2 | exon | 7229854 | 7230082 | 7229854 | ID=MS.gene23059.t1.exon3;Parent=MS.gene23059.t1 |
| chr7.2 | CDS | 7229854 | 7230082 | 7229854 | ID=cds.MS.gene23059.t1;Parent=MS.gene23059.t1 |
| chr7.2 | exon | 7229728 | 7229769 | 7229728 | ID=MS.gene23059.t1.exon4;Parent=MS.gene23059.t1 |
| chr7.2 | CDS | 7229728 | 7229769 | 7229728 | ID=cds.MS.gene23059.t1;Parent=MS.gene23059.t1 |
| Gene Sequence |
| Protein sequence |
