Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58228.t1 | XP_013458184.1 | 96.7 | 239 | 8 | 0 | 1 | 239 | 1 | 239 | 1.90E-131 | 478.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58228.t1 | Q9ZT66 | 41.5 | 195 | 104 | 4 | 6 | 194 | 29 | 219 | 2.6e-36 | 153.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58228.t1 | A0A072V269 | 96.7 | 239 | 8 | 0 | 1 | 239 | 1 | 239 | 1.4e-131 | 478.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene58228 | 0.8059 | 1.07E-49 | -1.69E-46 |
| MS.gene050170 | MS.gene58228 | -0.801532 | 8.61E-49 | -1.69E-46 |
| MS.gene051138 | MS.gene58228 | 0.827227 | 1.76E-54 | -1.69E-46 |
| MS.gene051651 | MS.gene58228 | 0.808971 | 2.38E-50 | -1.69E-46 |
| MS.gene052211 | MS.gene58228 | 0.824477 | 7.90E-54 | -1.69E-46 |
| MS.gene05240 | MS.gene58228 | 0.811263 | 7.64E-51 | -1.69E-46 |
| MS.gene052606 | MS.gene58228 | 0.823474 | 1.36E-53 | -1.69E-46 |
| MS.gene053420 | MS.gene58228 | 0.80211 | 6.55E-49 | -1.69E-46 |
| MS.gene053887 | MS.gene58228 | 0.80539 | 1.37E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene58228 | -0.828616 | 8.14E-55 | -1.69E-46 |
| MS.gene05589 | MS.gene58228 | -0.827854 | 1.24E-54 | -1.69E-46 |
| MS.gene056224 | MS.gene58228 | 0.809292 | 2.03E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene58228 | -0.81393 | 1.99E-51 | -1.69E-46 |
| MS.gene056590 | MS.gene58228 | 0.80815 | 3.57E-50 | -1.69E-46 |
| MS.gene056591 | MS.gene58228 | 0.806794 | 6.92E-50 | -1.69E-46 |
| MS.gene056748 | MS.gene58228 | 0.844807 | 6.01E-59 | -1.69E-46 |
| MS.gene056856 | MS.gene58228 | 0.808594 | 2.87E-50 | -1.69E-46 |
| MS.gene056988 | MS.gene58228 | 0.800139 | 1.66E-48 | -1.69E-46 |
| MS.gene057820 | MS.gene58228 | 0.815221 | 1.03E-51 | -1.69E-46 |
| MS.gene058099 | MS.gene58228 | 0.827897 | 1.21E-54 | -1.69E-46 |
| MS.gene058603 | MS.gene58228 | 0.807362 | 5.25E-50 | -1.69E-46 |
| MS.gene058838 | MS.gene58228 | -0.812028 | 5.21E-51 | -1.69E-46 |
| MS.gene059953 | MS.gene58228 | 0.815174 | 1.06E-51 | -1.69E-46 |
| MS.gene059955 | MS.gene58228 | 0.809971 | 1.45E-50 | -1.69E-46 |
| MS.gene060405 | MS.gene58228 | 0.802321 | 5.93E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58228.t1 | MTR_4g117450 | 96.653 | 239 | 8 | 0 | 1 | 239 | 1 | 239 | 1.18e-173 | 477 |
| MS.gene58228.t1 | MTR_4g117450 | 92.400 | 250 | 8 | 1 | 1 | 239 | 1 | 250 | 4.12e-170 | 469 |
| MS.gene58228.t1 | MTR_4g117400 | 80.335 | 239 | 47 | 0 | 1 | 239 | 55 | 293 | 2.18e-143 | 403 |
| MS.gene58228.t1 | MTR_4g117450 | 96.703 | 182 | 6 | 0 | 58 | 239 | 1 | 182 | 3.58e-129 | 362 |
| MS.gene58228.t1 | MTR_4g117380 | 66.946 | 239 | 78 | 1 | 1 | 239 | 1 | 238 | 7.92e-114 | 326 |
| MS.gene58228.t1 | MTR_4g117390 | 58.577 | 239 | 89 | 1 | 1 | 239 | 1 | 229 | 2.25e-100 | 291 |
| MS.gene58228.t1 | MTR_2g021340 | 49.378 | 241 | 120 | 2 | 1 | 239 | 1 | 241 | 2.81e-78 | 236 |
| MS.gene58228.t1 | MTR_2g021340 | 49.776 | 223 | 111 | 1 | 18 | 239 | 22 | 244 | 9.62e-74 | 224 |
| MS.gene58228.t1 | MTR_3g005060 | 25.837 | 209 | 135 | 6 | 41 | 238 | 119 | 318 | 2.34e-13 | 68.6 |
| MS.gene58228.t1 | MTR_3g005060 | 26.415 | 212 | 130 | 7 | 41 | 238 | 133 | 332 | 2.57e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58228.t1 | AT3G23600 | 63.180 | 239 | 88 | 0 | 1 | 239 | 1 | 239 | 3.30e-116 | 332 |
| MS.gene58228.t1 | AT3G23600 | 62.343 | 239 | 87 | 1 | 1 | 239 | 1 | 236 | 1.30e-112 | 323 |
| MS.gene58228.t1 | AT3G23570 | 59.414 | 239 | 97 | 0 | 1 | 239 | 1 | 239 | 3.92e-107 | 309 |
| MS.gene58228.t1 | AT3G23570 | 59.414 | 239 | 97 | 0 | 1 | 239 | 1 | 239 | 3.92e-107 | 309 |
| MS.gene58228.t1 | AT3G23570 | 59.414 | 239 | 97 | 0 | 1 | 239 | 1 | 239 | 3.92e-107 | 309 |
| MS.gene58228.t1 | AT1G35420 | 26.699 | 206 | 137 | 5 | 41 | 238 | 74 | 273 | 1.16e-20 | 88.2 |
| MS.gene58228.t1 | AT1G35420 | 26.699 | 206 | 137 | 5 | 41 | 238 | 110 | 309 | 2.07e-20 | 88.2 |
| MS.gene58228.t1 | AT1G35420 | 26.699 | 206 | 137 | 5 | 41 | 238 | 115 | 314 | 2.22e-20 | 88.2 |
Find 60 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCATCATACCTTAAAAT+TGG | 0.138234 | 8.3:-8392368 | None:intergenic |
| TCTGAAGCCTTCACAGCTTC+TGG | 0.161900 | 8.3:-8394155 | None:intergenic |
| AAAACAATTTGAACAAGTTT+TGG | 0.262734 | 8.3:+8393684 | MS.gene58228:CDS |
| CACGGCAGCTTGAATGAGTT+TGG | 0.282183 | 8.3:-8393120 | None:intergenic |
| AGTAAAGGTATTTCTACTAT+TGG | 0.306037 | 8.3:+8392935 | MS.gene58228:CDS |
| CATCATCATACCTTAAAATT+GGG | 0.309853 | 8.3:-8392367 | None:intergenic |
| TCTCGCATGGCTGGACTATA+AGG | 0.338659 | 8.3:+8394117 | MS.gene58228:CDS |
| CTGAAGCCTTCACAGCTTCT+GGG | 0.359372 | 8.3:-8394154 | None:intergenic |
| AATATTCCAATTGCTATACT+TGG | 0.381640 | 8.3:+8393625 | MS.gene58228:CDS |
| TTCCTAATGTCTCGCATGGC+TGG | 0.401802 | 8.3:+8394108 | MS.gene58228:CDS |
| CACGTCAGATCTTGTTGGAT+TGG | 0.404632 | 8.3:+8394183 | MS.gene58228:CDS |
| ATTTCTACTATTGGAGCTGC+TGG | 0.404890 | 8.3:+8392944 | MS.gene58228:CDS |
| TTGACAGACCTATAGATGTT+TGG | 0.407177 | 8.3:+8392653 | MS.gene58228:CDS |
| GCTAAGACTGTGTGTGAACT+TGG | 0.413908 | 8.3:+8393092 | MS.gene58228:intron |
| GCAGACAAGGTTGCAGCAAC+CGG | 0.418523 | 8.3:+8392574 | MS.gene58228:CDS |
| CTGAACTCCTTCAGTGGTGC+TGG | 0.438411 | 8.3:+8392096 | MS.gene58228:CDS |
| GGTGTTGATGCTTATCTCAC+TGG | 0.438465 | 8.3:+8392138 | MS.gene58228:CDS |
| TAAAAGTACTAACTGGTTGA+TGG | 0.439377 | 8.3:-8392684 | None:intergenic |
| TCAGCTCCAAGTATAGCAAT+TGG | 0.450408 | 8.3:-8393631 | None:intergenic |
| GTATTATATTTATAGGAGAA+AGG | 0.450413 | 8.3:+8392875 | MS.gene58228:intron |
| TCTTTCACCCAAACATCTAT+AGG | 0.455726 | 8.3:-8392661 | None:intergenic |
| GTCCAGCCATGCGAGACATT+AGG | 0.464533 | 8.3:-8394110 | None:intergenic |
| TGACAGACCTATAGATGTTT+GGG | 0.465529 | 8.3:+8392654 | MS.gene58228:CDS |
| TGACCTCTGGAGGAGTAACT+TGG | 0.499609 | 8.3:-8393660 | None:intergenic |
| CCACTGAAGGAGTTCAGAAC+TGG | 0.500926 | 8.3:-8392090 | None:intergenic |
| GCTGGCCATGTTGCTAAACT+TGG | 0.501919 | 8.3:+8392114 | MS.gene58228:CDS |
| GGAGGCACGTCAGATCTTGT+TGG | 0.510275 | 8.3:+8394178 | MS.gene58228:CDS |
| GGATCGCCGTTGAAGAAGTC+GGG | 0.513477 | 8.3:-8392613 | None:intergenic |
| AATGTCGGAGACGAGGAGAA+TGG | 0.515388 | 8.3:-8392181 | None:intergenic |
| AGAAGCTGTGAAGGCTTCAG+AGG | 0.515748 | 8.3:+8394157 | MS.gene58228:CDS |
| GGCCATGTTGCTAAACTTGG+TGG | 0.517313 | 8.3:+8392117 | MS.gene58228:CDS |
| GTGAAGGATGTTTGCAGACA+AGG | 0.524084 | 8.3:+8392561 | MS.gene58228:intron |
| GTGGTTCCCGACTTCTTCAA+CGG | 0.543789 | 8.3:+8392607 | MS.gene58228:CDS |
| ATCATCATACCTTAAAATTG+GGG | 0.549803 | 8.3:-8392366 | None:intergenic |
| GGCGGGTTTGAGCAGCATGC+CGG | 0.559592 | 8.3:-8392069 | None:intergenic |
| GGGAACCACCACATAATATC+CGG | 0.564070 | 8.3:-8392593 | None:intergenic |
| ATATTTCCTAATGTCTCGCA+TGG | 0.567492 | 8.3:+8394104 | MS.gene58228:CDS |
| TCGTCCACTGTGATATATGA+TGG | 0.569466 | 8.3:-8393152 | None:intergenic |
| TACCGAAAATGTCGGAGACG+AGG | 0.570501 | 8.3:-8392188 | None:intergenic |
| GTCAACATTCTGAGGATCGT+AGG | 0.572570 | 8.3:-8392635 | None:intergenic |
| TAAAGACCCAGAAGCTGTGA+AGG | 0.579286 | 8.3:+8394148 | MS.gene58228:CDS |
| GGGATCGCCGTTGAAGAAGT+CGG | 0.584664 | 8.3:-8392614 | None:intergenic |
| TCAACATTCTGAGGATCGTA+GGG | 0.585841 | 8.3:-8392634 | None:intergenic |
| CTGAAGGAGTTCAGAACTGG+CGG | 0.590785 | 8.3:-8392087 | None:intergenic |
| ATAGGTCTGTCAACATTCTG+AGG | 0.591096 | 8.3:-8392643 | None:intergenic |
| TGCAGCAACCGGATATTATG+TGG | 0.592827 | 8.3:+8392585 | MS.gene58228:CDS |
| CCAGTTCTGAACTCCTTCAG+TGG | 0.601307 | 8.3:+8392090 | MS.gene58228:CDS |
| CTAAGACTGTGTGTGAACTT+GGG | 0.604992 | 8.3:+8393093 | MS.gene58228:CDS |
| AACATGGCCAGCACCACTGA+AGG | 0.605814 | 8.3:-8392103 | None:intergenic |
| CACCACCAAGTTTAGCAACA+TGG | 0.606489 | 8.3:-8392119 | None:intergenic |
| AGCTGTGAAGGCTTCAGAGG+AGG | 0.607631 | 8.3:+8394160 | MS.gene58228:CDS |
| TGAAGGAGTTCAGAACTGGC+GGG | 0.608726 | 8.3:-8392086 | None:intergenic |
| GGAGACGAGGAGAATGGCGA+AGG | 0.615322 | 8.3:-8392175 | None:intergenic |
| ATCACAGTGGACGACATCAA+AGG | 0.644789 | 8.3:+8393161 | MS.gene58228:CDS |
| TAGAACAGTACCGAAAATGT+CGG | 0.648160 | 8.3:-8392196 | None:intergenic |
| AGAATGGCGAAGGTGCAAAG+AGG | 0.653955 | 8.3:-8392165 | None:intergenic |
| ATATGATGGATGTGCTAACA+CGG | 0.668508 | 8.3:-8393138 | None:intergenic |
| AGCAACCGGATATTATGTGG+TGG | 0.672628 | 8.3:+8392588 | MS.gene58228:CDS |
| CGACCAAGTTACTCCTCCAG+AGG | 0.688981 | 8.3:+8393657 | MS.gene58228:CDS |
| ACATCCATCATATATCACAG+TGG | 0.821753 | 8.3:+8393148 | MS.gene58228:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTATTCTAATAAG+CGG | - | chr8.3:8393396-8393415 | None:intergenic | 10.0% |
| !! | GAAAATTTATCATAATATTT+GGG | - | chr8.3:8393545-8393564 | None:intergenic | 10.0% |
| !!! | ATAATTTTTTTTTTTGAAGA+AGG | + | chr8.3:8393405-8393424 | MS.gene58228:intron | 10.0% |
| !!! | CATTCAAATATATTTAAAAT+TGG | - | chr8.3:8393292-8393311 | None:intergenic | 10.0% |
| !!! | TAATTTTTTTTTTTGAAGAA+GGG | + | chr8.3:8393406-8393425 | MS.gene58228:intron | 10.0% |
| !!! | TTTTAAAACATATTATTTGT+CGG | + | chr8.3:8393452-8393471 | MS.gene58228:intron | 10.0% |
| !! | GGAAAATTTATCATAATATT+TGG | - | chr8.3:8393546-8393565 | None:intergenic | 15.0% |
| !! | TAAATAACAACAAAATAGAA+TGG | - | chr8.3:8393737-8393756 | None:intergenic | 15.0% |
| !! | TAAATATATTTGAATGTAAG+AGG | + | chr8.3:8393296-8393315 | MS.gene58228:intron | 15.0% |
| !! | TAGTATATTGGAATTTAATT+TGG | - | chr8.3:8393851-8393870 | None:intergenic | 15.0% |
| !!! | AAATATAGATTTTGACTTTT+TGG | + | chr8.3:8392455-8392474 | MS.gene58228:intron | 15.0% |
| !! | ATGAACATTGTAAGAATATA+TGG | - | chr8.3:8393567-8393586 | None:intergenic | 20.0% |
| !! | CTTGCATGTATTATATTTAT+AGG | + | chr8.3:8392868-8392887 | MS.gene58228:intron | 20.0% |
| !! | GTATTATATTTATAGGAGAA+AGG | + | chr8.3:8392875-8392894 | MS.gene58228:intron | 20.0% |
| !!! | AAAACAATTTGAACAAGTTT+TGG | + | chr8.3:8393684-8393703 | MS.gene58228:CDS | 20.0% |
| !!! | AGAAATACCTTTACTTTTTA+AGG | - | chr8.3:8392930-8392949 | None:intergenic | 20.0% |
| !!! | AGTTGATAATTATGTTGATT+GGG | + | chr8.3:8393883-8393902 | MS.gene58228:intron | 20.0% |
| !!! | ATCATTATAAAAGTACTAAC+TGG | - | chr8.3:8392694-8392713 | None:intergenic | 20.0% |
| !!! | TAATTATTAGTCTTTCTTTC+AGG | + | chr8.3:8393598-8393617 | MS.gene58228:intron | 20.0% |
| !!! | TAGTTGATAATTATGTTGAT+TGG | + | chr8.3:8393882-8393901 | MS.gene58228:intron | 20.0% |
| !!! | TTTTTCACTTACAAAAGAAT+TGG | + | chr8.3:8392495-8392514 | MS.gene58228:intron | 20.0% |
| ! | AATATTCCAATTGCTATACT+TGG | + | chr8.3:8393625-8393644 | MS.gene58228:CDS | 25.0% |
| ! | ATAATTATCAACTAACGCTA+TGG | - | chr8.3:8393876-8393895 | None:intergenic | 25.0% |
| ! | ATCATCATACCTTAAAATTG+GGG | - | chr8.3:8392369-8392388 | None:intergenic | 25.0% |
| ! | ATGTATATATGTATGTGTGA+TGG | - | chr8.3:8393760-8393779 | None:intergenic | 25.0% |
| ! | ATTGAAGCCTTAAAAAGTAA+AGG | + | chr8.3:8392920-8392939 | MS.gene58228:CDS | 25.0% |
| ! | CATCATCATACCTTAAAATT+GGG | - | chr8.3:8392370-8392389 | None:intergenic | 25.0% |
| ! | TACTCAGAATTTCTTGTATA+AGG | - | chr8.3:8393811-8393830 | None:intergenic | 25.0% |
| ! | TCAACAAAATGTAAACCATA+AGG | - | chr8.3:8392534-8392553 | None:intergenic | 25.0% |
| ! | TCATCATCATACCTTAAAAT+TGG | - | chr8.3:8392371-8392390 | None:intergenic | 25.0% |
| !! | AAATCTATATTTAAGACCAG+AGG | - | chr8.3:8392447-8392466 | None:intergenic | 25.0% |
| !! | AATCTATATTTAAGACCAGA+GGG | - | chr8.3:8392446-8392465 | None:intergenic | 25.0% |
| !!! | ACATGCTTAATTTGTTTTGT+AGG | + | chr8.3:8392335-8392354 | MS.gene58228:intron | 25.0% |
| !!! | AGTAAAGGTATTTCTACTAT+TGG | + | chr8.3:8392935-8392954 | MS.gene58228:CDS | 25.0% |
| !!! | ATTAGTTTTTCTACTTTGTC+TGG | - | chr8.3:8393973-8393992 | None:intergenic | 25.0% |
| !!! | CTTTTTAAGGCTTCAATTAT+TGG | - | chr8.3:8392917-8392936 | None:intergenic | 25.0% |
| !!! | TTAGTTTTTCTACTTTGTCT+GGG | - | chr8.3:8393972-8393991 | None:intergenic | 25.0% |
| AGGCACAATAACAATAAACA+AGG | - | chr8.3:8392829-8392848 | None:intergenic | 30.0% | |
| ATCAAGGAATATGCAAATTG+AGG | - | chr8.3:8393213-8393232 | None:intergenic | 30.0% | |
| CATATTGAAAACGTGAGAAT+TGG | - | chr8.3:8392399-8392418 | None:intergenic | 30.0% | |
| TTTGCATATTCCTTGATTAG+AGG | + | chr8.3:8393216-8393235 | MS.gene58228:intron | 30.0% | |
| ! | GATATAAAGCCCCAATTTTA+AGG | + | chr8.3:8392357-8392376 | MS.gene58228:CDS | 30.0% |
| ! | GGTTGTTTCAATATTCCTTA+TGG | + | chr8.3:8392516-8392535 | MS.gene58228:intron | 30.0% |
| ! | TTTCCTTCTCATGTATTTTG+CGG | + | chr8.3:8392224-8392243 | MS.gene58228:intron | 30.0% |
| ! | TTTTGTTGATCTGTTTGTGA+AGG | + | chr8.3:8392545-8392564 | MS.gene58228:intron | 30.0% |
| !! | TAAAAGTACTAACTGGTTGA+TGG | - | chr8.3:8392687-8392706 | None:intergenic | 30.0% |
| !! | TCAAATTGTTTTATGACCTC+TGG | - | chr8.3:8393676-8393695 | None:intergenic | 30.0% |
| ACATCCATCATATATCACAG+TGG | + | chr8.3:8393148-8393167 | MS.gene58228:CDS | 35.0% | |
| ATATTTCCTAATGTCTCGCA+TGG | + | chr8.3:8394104-8394123 | MS.gene58228:CDS | 35.0% | |
| GCAAAATACATGAGAAGGAA+AGG | - | chr8.3:8392225-8392244 | None:intergenic | 35.0% | |
| TAAGTTCTTGAGTTCAAACC+CGG | + | chr8.3:8393946-8393965 | MS.gene58228:intron | 35.0% | |
| TCTTTCACCCAAACATCTAT+AGG | - | chr8.3:8392664-8392683 | None:intergenic | 35.0% | |
| TGACAGACCTATAGATGTTT+GGG | + | chr8.3:8392654-8392673 | MS.gene58228:CDS | 35.0% | |
| TTGACAGACCTATAGATGTT+TGG | + | chr8.3:8392653-8392672 | MS.gene58228:CDS | 35.0% | |
| ! | ATTATGTTGATTGGGTAGTG+AGG | + | chr8.3:8393891-8393910 | MS.gene58228:intron | 35.0% |
| ! | TAGAACAGTACCGAAAATGT+CGG | - | chr8.3:8392199-8392218 | None:intergenic | 35.0% |
| !! | AACGCTATGGACTAGTATAT+TGG | - | chr8.3:8393863-8393882 | None:intergenic | 35.0% |
| !! | AATTGTTTTATGACCTCTGG+AGG | - | chr8.3:8393673-8393692 | None:intergenic | 35.0% |
| !! | ATATGATGGATGTGCTAACA+CGG | - | chr8.3:8393141-8393160 | None:intergenic | 35.0% |
| !!! | ATGTATCGTTTTGTTTGTGC+AGG | + | chr8.3:8394064-8394083 | MS.gene58228:intron | 35.0% |
| ATAGGTCTGTCAACATTCTG+AGG | - | chr8.3:8392646-8392665 | None:intergenic | 40.0% | |
| ATTCCTTGATTAGAGGACTC+AGG | + | chr8.3:8393223-8393242 | MS.gene58228:intron | 40.0% | |
| ATTTCTACTATTGGAGCTGC+TGG | + | chr8.3:8392944-8392963 | MS.gene58228:CDS | 40.0% | |
| CTAAGACTGTGTGTGAACTT+GGG | + | chr8.3:8393093-8393112 | MS.gene58228:CDS | 40.0% | |
| GCAAGTGCCAGAAAATTATG+TGG | - | chr8.3:8392853-8392872 | None:intergenic | 40.0% | |
| GTGAGTGTCTTTCACTTGTT+TGG | + | chr8.3:8392981-8393000 | MS.gene58228:intron | 40.0% | |
| GTGCCAGAAAATTATGTGGA+AGG | - | chr8.3:8392849-8392868 | None:intergenic | 40.0% | |
| TCAGCTCCAAGTATAGCAAT+TGG | - | chr8.3:8393634-8393653 | None:intergenic | 40.0% | |
| TCGTCCACTGTGATATATGA+TGG | - | chr8.3:8393155-8393174 | None:intergenic | 40.0% | |
| TTTCCTGAGTCCTCTAATCA+AGG | - | chr8.3:8393229-8393248 | None:intergenic | 40.0% | |
| ! | GTGCCTTCCACATAATTTTC+TGG | + | chr8.3:8392843-8392862 | MS.gene58228:intron | 40.0% |
| ! | TCAACATTCTGAGGATCGTA+GGG | - | chr8.3:8392637-8392656 | None:intergenic | 40.0% |
| ! | TTTTTCTACTTTGTCTGGGC+CGG | - | chr8.3:8393968-8393987 | None:intergenic | 40.0% |
| AGCAACCGGATATTATGTGG+TGG | + | chr8.3:8392588-8392607 | MS.gene58228:CDS | 45.0% | |
| AGTGGACGACATCAAAGGTA+TGG | + | chr8.3:8393166-8393185 | MS.gene58228:intron | 45.0% | |
| ATCACAGTGGACGACATCAA+AGG | + | chr8.3:8393161-8393180 | MS.gene58228:CDS | 45.0% | |
| CACCACCAAGTTTAGCAACA+TGG | - | chr8.3:8392122-8392141 | None:intergenic | 45.0% | |
| CACGTCAGATCTTGTTGGAT+TGG | + | chr8.3:8394183-8394202 | MS.gene58228:CDS | 45.0% | |
| CCTCCGCAAAATACATGAGA+AGG | - | chr8.3:8392230-8392249 | None:intergenic | 45.0% | |
| GCTAAGACTGTGTGTGAACT+TGG | + | chr8.3:8393092-8393111 | MS.gene58228:intron | 45.0% | |
| GGGAACCACCACATAATATC+CGG | - | chr8.3:8392596-8392615 | None:intergenic | 45.0% | |
| GTGAAGGATGTTTGCAGACA+AGG | + | chr8.3:8392561-8392580 | MS.gene58228:intron | 45.0% | |
| TAAAGACCCAGAAGCTGTGA+AGG | + | chr8.3:8394148-8394167 | MS.gene58228:CDS | 45.0% | |
| TGCAGCAACCGGATATTATG+TGG | + | chr8.3:8392585-8392604 | MS.gene58228:CDS | 45.0% | |
| TTGATACTAAACGCTCCCTC+TGG | + | chr8.3:8392428-8392447 | MS.gene58228:intron | 45.0% | |
| ! | CATGTATTTTGCGGAGGTCA+TGG | + | chr8.3:8392233-8392252 | MS.gene58228:intron | 45.0% |
| ! | CCTTCTCATGTATTTTGCGG+AGG | + | chr8.3:8392227-8392246 | MS.gene58228:intron | 45.0% |
| ! | GTCAACATTCTGAGGATCGT+AGG | - | chr8.3:8392638-8392657 | None:intergenic | 45.0% |
| ! | TGGAGCTGCTGGATTTTGTT+GGG | + | chr8.3:8392955-8392974 | MS.gene58228:CDS | 45.0% |
| ! | TTGGAGCTGCTGGATTTTGT+TGG | + | chr8.3:8392954-8392973 | MS.gene58228:CDS | 45.0% |
| ! | TTTTCTACTTTGTCTGGGCC+GGG | - | chr8.3:8393967-8393986 | None:intergenic | 45.0% |
| !! | GGTGTTGATGCTTATCTCAC+TGG | + | chr8.3:8392138-8392157 | MS.gene58228:CDS | 45.0% |
| AATGTCGGAGACGAGGAGAA+TGG | - | chr8.3:8392184-8392203 | None:intergenic | 50.0% | |
| AGAAGCTGTGAAGGCTTCAG+AGG | + | chr8.3:8394157-8394176 | MS.gene58228:CDS | 50.0% | |
| CACGGCAGCTTGAATGAGTT+TGG | - | chr8.3:8393123-8393142 | None:intergenic | 50.0% | |
| CCACTGAAGGAGTTCAGAAC+TGG | - | chr8.3:8392093-8392112 | None:intergenic | 50.0% | |
| CTGAAGCCTTCACAGCTTCT+GGG | - | chr8.3:8394157-8394176 | None:intergenic | 50.0% | |
| CTGAAGGAGTTCAGAACTGG+CGG | - | chr8.3:8392090-8392109 | None:intergenic | 50.0% | |
| GCTGGCCATGTTGCTAAACT+TGG | + | chr8.3:8392114-8392133 | MS.gene58228:CDS | 50.0% | |
| GGCCATGTTGCTAAACTTGG+TGG | + | chr8.3:8392117-8392136 | MS.gene58228:CDS | 50.0% | |
| GTGGTTCCCGACTTCTTCAA+CGG | + | chr8.3:8392607-8392626 | MS.gene58228:CDS | 50.0% | |
| TACCGAAAATGTCGGAGACG+AGG | - | chr8.3:8392191-8392210 | None:intergenic | 50.0% | |
| TCTCGCATGGCTGGACTATA+AGG | + | chr8.3:8394117-8394136 | MS.gene58228:CDS | 50.0% | |
| TGAAGGAGTTCAGAACTGGC+GGG | - | chr8.3:8392089-8392108 | None:intergenic | 50.0% | |
| TTCCTAATGTCTCGCATGGC+TGG | + | chr8.3:8394108-8394127 | MS.gene58228:CDS | 50.0% | |
| ! | AGAATGGCGAAGGTGCAAAG+AGG | - | chr8.3:8392168-8392187 | None:intergenic | 50.0% |
| ! | CTCCTCGTCTCCGACATTTT+CGG | + | chr8.3:8392186-8392205 | MS.gene58228:CDS | 50.0% |
| ! | GGAGCTGCTGGATTTTGTTG+GGG | + | chr8.3:8392956-8392975 | MS.gene58228:CDS | 50.0% |
| ! | TCTGAAGCCTTCACAGCTTC+TGG | - | chr8.3:8394158-8394177 | None:intergenic | 50.0% |
| ! | TGACCTCTGGAGGAGTAACT+TGG | - | chr8.3:8393663-8393682 | None:intergenic | 50.0% |
| !! | CCAGTTCTGAACTCCTTCAG+TGG | + | chr8.3:8392090-8392109 | MS.gene58228:CDS | 50.0% |
| AACATGGCCAGCACCACTGA+AGG | - | chr8.3:8392106-8392125 | None:intergenic | 55.0% | |
| AGCTGTGAAGGCTTCAGAGG+AGG | + | chr8.3:8394160-8394179 | MS.gene58228:CDS | 55.0% | |
| CGACCAAGTTACTCCTCCAG+AGG | + | chr8.3:8393657-8393676 | MS.gene58228:CDS | 55.0% | |
| CTGAACTCCTTCAGTGGTGC+TGG | + | chr8.3:8392096-8392115 | MS.gene58228:CDS | 55.0% | |
| GCAGACAAGGTTGCAGCAAC+CGG | + | chr8.3:8392574-8392593 | MS.gene58228:CDS | 55.0% | |
| GGATCGCCGTTGAAGAAGTC+GGG | - | chr8.3:8392616-8392635 | None:intergenic | 55.0% | |
| GGGATCGCCGTTGAAGAAGT+CGG | - | chr8.3:8392617-8392636 | None:intergenic | 55.0% | |
| GTCCAGCCATGCGAGACATT+AGG | - | chr8.3:8394113-8394132 | None:intergenic | 55.0% | |
| ! | GCTGCTGGATTTTGTTGGGG+TGG | + | chr8.3:8392959-8392978 | MS.gene58228:CDS | 55.0% |
| ! | GGAGGCACGTCAGATCTTGT+TGG | + | chr8.3:8394178-8394197 | MS.gene58228:CDS | 55.0% |
| GGAGACGAGGAGAATGGCGA+AGG | - | chr8.3:8392178-8392197 | None:intergenic | 60.0% | |
| ! | GGCGGGTTTGAGCAGCATGC+CGG | - | chr8.3:8392072-8392091 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 8392060 | 8394226 | 8392060 | ID=MS.gene58228 |
| chr8.3 | mRNA | 8392060 | 8394226 | 8392060 | ID=MS.gene58228.t1;Parent=MS.gene58228 |
| chr8.3 | exon | 8392060 | 8392207 | 8392060 | ID=MS.gene58228.t1.exon1;Parent=MS.gene58228.t1 |
| chr8.3 | CDS | 8392060 | 8392207 | 8392060 | ID=cds.MS.gene58228.t1;Parent=MS.gene58228.t1 |
| chr8.3 | exon | 8392357 | 8392378 | 8392357 | ID=MS.gene58228.t1.exon2;Parent=MS.gene58228.t1 |
| chr8.3 | CDS | 8392357 | 8392378 | 8392357 | ID=cds.MS.gene58228.t1;Parent=MS.gene58228.t1 |
| chr8.3 | exon | 8392567 | 8392693 | 8392567 | ID=MS.gene58228.t1.exon3;Parent=MS.gene58228.t1 |
| chr8.3 | CDS | 8392567 | 8392693 | 8392567 | ID=cds.MS.gene58228.t1;Parent=MS.gene58228.t1 |
| chr8.3 | exon | 8392890 | 8392980 | 8392890 | ID=MS.gene58228.t1.exon4;Parent=MS.gene58228.t1 |
| chr8.3 | CDS | 8392890 | 8392980 | 8392890 | ID=cds.MS.gene58228.t1;Parent=MS.gene58228.t1 |
| chr8.3 | exon | 8393093 | 8393182 | 8393093 | ID=MS.gene58228.t1.exon5;Parent=MS.gene58228.t1 |
| chr8.3 | CDS | 8393093 | 8393182 | 8393093 | ID=cds.MS.gene58228.t1;Parent=MS.gene58228.t1 |
| chr8.3 | exon | 8393620 | 8393720 | 8393620 | ID=MS.gene58228.t1.exon6;Parent=MS.gene58228.t1 |
| chr8.3 | CDS | 8393620 | 8393720 | 8393620 | ID=cds.MS.gene58228.t1;Parent=MS.gene58228.t1 |
| chr8.3 | exon | 8394086 | 8394226 | 8394086 | ID=MS.gene58228.t1.exon7;Parent=MS.gene58228.t1 |
| chr8.3 | CDS | 8394086 | 8394226 | 8394086 | ID=cds.MS.gene58228.t1;Parent=MS.gene58228.t1 |
| Gene Sequence |
| Protein sequence |
