Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58461.t1 | XP_003609029.1 | 87.1 | 380 | 49 | 0 | 1 | 380 | 13 | 392 | 1.20E-146 | 529.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58461.t1 | G7JQV9 | 87.1 | 380 | 49 | 0 | 1 | 380 | 13 | 392 | 8.4e-147 | 529.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049596 | MS.gene58461 | 0.82748 | 1.53E-54 | -1.69E-46 |
| MS.gene049989 | MS.gene58461 | 0.830188 | 3.38E-55 | -1.69E-46 |
| MS.gene050297 | MS.gene58461 | 0.861112 | 1.29E-63 | -1.69E-46 |
| MS.gene05124 | MS.gene58461 | 0.828518 | 8.60E-55 | -1.69E-46 |
| MS.gene051629 | MS.gene58461 | 0.805176 | 1.51E-49 | -1.69E-46 |
| MS.gene051955 | MS.gene58461 | 0.819887 | 9.17E-53 | -1.69E-46 |
| MS.gene052143 | MS.gene58461 | 0.821449 | 4.01E-53 | -1.69E-46 |
| MS.gene052308 | MS.gene58461 | 0.811666 | 6.25E-51 | -1.69E-46 |
| MS.gene052367 | MS.gene58461 | 0.844088 | 9.39E-59 | -1.69E-46 |
| MS.gene053173 | MS.gene58461 | 0.832922 | 7.17E-56 | -1.69E-46 |
| MS.gene053348 | MS.gene58461 | 0.828673 | 7.89E-55 | -1.69E-46 |
| MS.gene053416 | MS.gene58461 | 0.817498 | 3.20E-52 | -1.69E-46 |
| MS.gene053417 | MS.gene58461 | 0.814472 | 1.51E-51 | -1.69E-46 |
| MS.gene054551 | MS.gene58461 | 0.840284 | 9.54E-58 | -1.69E-46 |
| MS.gene054552 | MS.gene58461 | 0.800887 | 1.17E-48 | -1.69E-46 |
| MS.gene054593 | MS.gene58461 | 0.830257 | 3.25E-55 | -1.69E-46 |
| MS.gene054643 | MS.gene58461 | 0.839735 | 1.33E-57 | -1.69E-46 |
| MS.gene055308 | MS.gene58461 | 0.818881 | 1.56E-52 | -1.69E-46 |
| MS.gene055578 | MS.gene58461 | 0.822179 | 2.72E-53 | -1.69E-46 |
| MS.gene055957 | MS.gene58461 | 0.812701 | 3.71E-51 | -1.69E-46 |
| MS.gene056041 | MS.gene58461 | 0.85466 | 1.06E-61 | -1.69E-46 |
| MS.gene05640 | MS.gene58461 | 0.819639 | 1.05E-52 | -1.69E-46 |
| MS.gene057367 | MS.gene58461 | 0.802545 | 5.33E-49 | -1.69E-46 |
| MS.gene058853 | MS.gene58461 | 0.845449 | 4.03E-59 | -1.69E-46 |
| MS.gene059300 | MS.gene58461 | 0.821395 | 4.13E-53 | -1.69E-46 |
| MS.gene059553 | MS.gene58461 | 0.83652 | 8.92E-57 | -1.69E-46 |
| MS.gene060473 | MS.gene58461 | 0.836689 | 8.08E-57 | -1.69E-46 |
| MS.gene060565 | MS.gene58461 | 0.838813 | 2.30E-57 | -1.69E-46 |
| MS.gene06057 | MS.gene58461 | 0.803962 | 2.71E-49 | -1.69E-46 |
| MS.gene061099 | MS.gene58461 | 0.806837 | 6.77E-50 | -1.69E-46 |
| MS.gene061260 | MS.gene58461 | 0.854658 | 1.06E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 76 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCTCGTCTTGTAATTTC+TGG | 0.205275 | 8.4:-18991378 | None:intergenic |
| TTTCTTGACCCCACTCTTAT+TGG | 0.213637 | 8.4:-18991893 | None:intergenic |
| CTTGATCTTGTCTCAGAGAT+TGG | 0.260994 | 8.4:-18990844 | None:intergenic |
| AGTGGATATCTTTGAAGTTT+TGG | 0.266285 | 8.4:-18989813 | None:intergenic |
| GACGAACGAGTTTCCTCTTC+TGG | 0.269058 | 8.4:-18991529 | None:intergenic |
| TGCATCTGGCTTCTGTTCCT+TGG | 0.298826 | 8.4:-18989853 | None:intergenic |
| TTGATCTTGTCTCAGAGATT+GGG | 0.302498 | 8.4:-18990843 | None:intergenic |
| AAGAGTGGGGTCAAGAAATA+TGG | 0.315516 | 8.4:+18991898 | MS.gene58461:CDS |
| ACAGGATTAGAGAGCCTTCT+TGG | 0.325025 | 8.4:-18990775 | None:intergenic |
| GCAATTTCAAAATCTGCTTC+TGG | 0.340732 | 8.4:+18991814 | MS.gene58461:CDS |
| AGAGACCGGCGTTCGGGTTC+TGG | 0.355366 | 8.4:-18990896 | None:intergenic |
| GGCGACTCTATGGCTTTAAC+AGG | 0.355728 | 8.4:-18991646 | None:intergenic |
| AACCATAGAGTCACCCAAAA+AGG | 0.356976 | 8.4:+18991732 | MS.gene58461:CDS |
| AATCTCAGAGACCGGCGTTC+GGG | 0.362228 | 8.4:-18990902 | None:intergenic |
| AGCCATAGAGTCGCCCAAAA+AGG | 0.383256 | 8.4:+18991654 | MS.gene58461:CDS |
| AAATCTCAGAGACCGGCGTT+CGG | 0.394436 | 8.4:-18990903 | None:intergenic |
| GTTATGTTGCCAACCGCCTT+TGG | 0.396563 | 8.4:-18990820 | None:intergenic |
| TGAGAAGCATTGGTGCTAAC+AGG | 0.401430 | 8.4:-18989876 | None:intergenic |
| TTATTGGTTTCAAGCTTGCT+TGG | 0.407131 | 8.4:-18991877 | None:intergenic |
| TCTTGTCTTCAGCTTCATAT+TGG | 0.418460 | 8.4:+18990956 | MS.gene58461:CDS |
| GGGTTCTGGTTTGAGGCTCT+TGG | 0.425515 | 8.4:-18990882 | None:intergenic |
| AGGAGAAGTGACTTGAATAA+AGG | 0.430401 | 8.4:-18991704 | None:intergenic |
| TTGGTGCTAACAGGTGCATC+TGG | 0.433704 | 8.4:-18989867 | None:intergenic |
| GAGACAAGATCAAGGAGGTC+TGG | 0.434478 | 8.4:+18990853 | MS.gene58461:CDS |
| TGGATTCTTCAAACTAGCCT+TGG | 0.435742 | 8.4:+18991029 | MS.gene58461:CDS |
| TTGCCAACCGCCTTTGGACT+CGG | 0.440988 | 8.4:-18990814 | None:intergenic |
| GTAGGTGCCCTTGATTTCTC+TGG | 0.448973 | 8.4:+18990724 | MS.gene58461:CDS |
| GGCGTTCGGGTTCTGGTTTG+AGG | 0.450929 | 8.4:-18990889 | None:intergenic |
| TCAAAGATATCCACTGCGTT+CGG | 0.452607 | 8.4:+18989821 | MS.gene58461:CDS |
| TTTATTCAAGTCACTTCTCC+TGG | 0.454203 | 8.4:+18991706 | MS.gene58461:CDS |
| AGAGGCAGTGTTTAAGCACT+TGG | 0.461037 | 8.4:-18991608 | None:intergenic |
| CCTCTTAGATTGAGAAGCAT+TGG | 0.480180 | 8.4:-18989886 | None:intergenic |
| TTCAAACTAGCCTTGGAGGC+AGG | 0.481991 | 8.4:+18991036 | MS.gene58461:CDS |
| TGTCCTTGCCAGAGAAATCA+AGG | 0.493273 | 8.4:-18990732 | None:intergenic |
| GAGGCAGTGTTTAAGCACTT+GGG | 0.497338 | 8.4:-18991607 | None:intergenic |
| CTGGTAGTTTGAACCGTAGT+AGG | 0.501816 | 8.4:+18991833 | MS.gene58461:CDS |
| ATTCTTCAAACTAGCCTTGG+AGG | 0.505138 | 8.4:+18991032 | MS.gene58461:CDS |
| CCAATGCTTCTCAATCTAAG+AGG | 0.511758 | 8.4:+18989886 | MS.gene58461:CDS |
| CTCGTCTTGTAATTTCTGGA+AGG | 0.512731 | 8.4:-18991374 | None:intergenic |
| TGATCTTGTCTCAGAGATTG+GGG | 0.514449 | 8.4:-18990842 | None:intergenic |
| AATCAAGGGCACCTACACTT+TGG | 0.520785 | 8.4:-18990717 | None:intergenic |
| TGCCCTTGATTTCTCTGGCA+AGG | 0.521077 | 8.4:+18990729 | MS.gene58461:CDS |
| TACCTCACATCCTGCCTCCA+AGG | 0.524168 | 8.4:-18991046 | None:intergenic |
| TCGTCTTGTAATTTCTGGAA+GGG | 0.535594 | 8.4:-18991373 | None:intergenic |
| AGGAGAAATGACTTGAATAG+AGG | 0.536982 | 8.4:-18991626 | None:intergenic |
| GGAGTTGTAGATGATTTGAC+AGG | 0.537947 | 8.4:-18990793 | None:intergenic |
| ACTTCTTCTACCATGGCTAC+TGG | 0.540510 | 8.4:+18991574 | MS.gene58461:CDS |
| CTTCAGCACTTCTTCTACCA+TGG | 0.540835 | 8.4:+18991567 | MS.gene58461:CDS |
| ACCTACACTTTGGCTTACAT+TGG | 0.542241 | 8.4:-18990707 | None:intergenic |
| GAAAAGCACAACATTTCACT+TGG | 0.547280 | 8.4:+18991009 | MS.gene58461:CDS |
| AGCTTGAAACCAATAAGAGT+GGG | 0.548716 | 8.4:+18991884 | MS.gene58461:CDS |
| AGGCAGTGTTTAAGCACTTG+GGG | 0.559218 | 8.4:-18991606 | None:intergenic |
| TGGAGAACAAGTGAAAGTAC+TGG | 0.572339 | 8.4:+18991441 | MS.gene58461:CDS |
| GGATTAGAGAGCCTTCTTGG+TGG | 0.579620 | 8.4:-18990772 | None:intergenic |
| ACTCGTTCGTCTGATGATGA+AGG | 0.582042 | 8.4:+18991541 | MS.gene58461:CDS |
| TTCAATCAAATCATCATCAG+TGG | 0.585107 | 8.4:-18992195 | None:intergenic |
| AGGAAAGCTGATGCTAAAGA+AGG | 0.586233 | 8.4:+18991922 | MS.gene58461:CDS |
| CAATCTCTGAGACAAGATCA+AGG | 0.592779 | 8.4:+18990845 | MS.gene58461:CDS |
| GATCTGAAAATCTCAGAGAC+CGG | 0.593480 | 8.4:-18990910 | None:intergenic |
| TATTTCACAGATGCCAGAAG+AGG | 0.595376 | 8.4:+18991516 | MS.gene58461:CDS |
| AAGCTTGAAACCAATAAGAG+TGG | 0.600197 | 8.4:+18991883 | MS.gene58461:CDS |
| GGTCAGTTTACCAGTAGCCA+TGG | 0.603404 | 8.4:-18991584 | None:intergenic |
| ACTCCGAGTCCAAAGGCGGT+TGG | 0.613714 | 8.4:+18990811 | MS.gene58461:CDS |
| AGCCTTGGAGGCAGGATGTG+AGG | 0.616507 | 8.4:+18991044 | MS.gene58461:CDS |
| ATCTACAACTCCGAGTCCAA+AGG | 0.621399 | 8.4:+18990804 | MS.gene58461:CDS |
| CAAGTGCTAAACCACCAAGA+AGG | 0.625854 | 8.4:+18990761 | MS.gene58461:CDS |
| GATCTAGAAGCCGAACGCAG+TGG | 0.627660 | 8.4:-18989831 | None:intergenic |
| GCGTTCGGCTTCTAGATCCA+AGG | 0.635836 | 8.4:+18989836 | MS.gene58461:CDS |
| GTGGGGTCAAGAAATATGGA+AGG | 0.640207 | 8.4:+18991902 | MS.gene58461:CDS |
| TCAAACCAGAACCCGAACGC+CGG | 0.647853 | 8.4:+18990891 | MS.gene58461:CDS |
| GGCAGTGTTTAAGCACTTGG+GGG | 0.661328 | 8.4:-18991605 | None:intergenic |
| TACAACTCCGAGTCCAAAGG+CGG | 0.670021 | 8.4:+18990807 | MS.gene58461:CDS |
| GTCCTTGCCAGAGAAATCAA+GGG | 0.679822 | 8.4:-18990731 | None:intergenic |
| GCCAATGTAAGCCAAAGTGT+AGG | 0.695393 | 8.4:+18990706 | MS.gene58461:CDS |
| GCTTGAAACCAATAAGAGTG+GGG | 0.706638 | 8.4:+18991885 | MS.gene58461:CDS |
| TCTCTGAGACAAGATCAAGG+AGG | 0.818846 | 8.4:+18990848 | MS.gene58461:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTGTGATTTTTTATATTG+TGG | + | chr8.4:18991166-18991185 | MS.gene58461:intron | 15.0% |
| !!! | TCAATTTTCATATATAACTA+AGG | - | chr8.4:18990586-18990605 | None:intergenic | 15.0% |
| !! | AAAAAGAAAATATGGTAAAG+TGG | + | chr8.4:18992068-18992087 | MS.gene58461:intron | 20.0% |
| !! | AATCTAAAAATAAGAGCTTT+AGG | + | chr8.4:18990300-18990319 | MS.gene58461:intron | 20.0% |
| !! | ATGACAAAATTGAAATAAAC+AGG | - | chr8.4:18991095-18991114 | None:intergenic | 20.0% |
| !! | TGAAGTTAATTTCAAAACAT+TGG | + | chr8.4:18990032-18990051 | MS.gene58461:intron | 20.0% |
| !! | TTATTATGTTGAAAATCGAA+GGG | - | chr8.4:18990109-18990128 | None:intergenic | 20.0% |
| !! | TTCATATATAACTAAGGTTA+TGG | - | chr8.4:18990580-18990599 | None:intergenic | 20.0% |
| !! | TTTATTATGTTGAAAATCGA+AGG | - | chr8.4:18990110-18990129 | None:intergenic | 20.0% |
| !!! | AAATTGAGTGAATACTTTTT+AGG | + | chr8.4:18990599-18990618 | MS.gene58461:intron | 20.0% |
| !!! | AATCTAATTTACATTTTCAG+AGG | + | chr8.4:18990673-18990692 | MS.gene58461:intron | 20.0% |
| !!! | AATTTTAAAACTTGCTAAGT+AGG | - | chr8.4:18991139-18991158 | None:intergenic | 20.0% |
| !!! | TAGAGAATTATAGTTTTGTT+TGG | + | chr8.4:18989955-18989974 | MS.gene58461:intron | 20.0% |
| ! | ACCAACATGTATACATATAT+TGG | + | chr8.4:18990391-18990410 | MS.gene58461:intron | 25.0% |
| ! | AGAATATATGTCTGATATGT+TGG | + | chr8.4:18992149-18992168 | MS.gene58461:intron | 25.0% |
| ! | ATAAACAGGAATGAATTGAT+TGG | - | chr8.4:18991081-18991100 | None:intergenic | 25.0% |
| ! | ATTCCTTAACATGTATCTTT+AGG | - | chr8.4:18990283-18990302 | None:intergenic | 25.0% |
| ! | GTGTATAATGTAATTAACGT+TGG | - | chr8.4:18990082-18990101 | None:intergenic | 25.0% |
| ! | GTTCACATTAAACAAACTAA+AGG | - | chr8.4:18990423-18990442 | None:intergenic | 25.0% |
| ! | TGCAATCAAAGTTTATCAAT+TGG | - | chr8.4:18991208-18991227 | None:intergenic | 25.0% |
| ! | TGCTGAAGAAAAAGAAAATA+TGG | + | chr8.4:18992060-18992079 | MS.gene58461:CDS | 25.0% |
| !!! | TAATCAAGTCGTCTTTTTTA+TGG | + | chr8.4:18991327-18991346 | MS.gene58461:intron | 25.0% |
| !!! | TTTTGGCTAATTTCCTTTTT+GGG | - | chr8.4:18991670-18991689 | None:intergenic | 25.0% |
| AAATCACATTTATACATGCG+TGG | + | chr8.4:18991253-18991272 | MS.gene58461:intron | 30.0% | |
| AACTGAAAATTCATGCAAGA+AGG | + | chr8.4:18990145-18990164 | MS.gene58461:intron | 30.0% | |
| ACAAAGACTTATCGATCTTA+AGG | - | chr8.4:18990485-18990504 | None:intergenic | 30.0% | |
| ACTAGCCAAAAGAAAAATCT+TGG | + | chr8.4:18991757-18991776 | MS.gene58461:CDS | 30.0% | |
| ACTCAGATTGTTTGAATTTG+TGG | + | chr8.4:18989994-18990013 | MS.gene58461:intron | 30.0% | |
| CAACAAAAACTTACTGAACT+TGG | + | chr8.4:18991421-18991440 | MS.gene58461:CDS | 30.0% | |
| CTCAGATTGTTTGAATTTGT+GGG | + | chr8.4:18989995-18990014 | MS.gene58461:intron | 30.0% | |
| GATTTGATTGAAGTCATGTA+AGG | + | chr8.4:18992206-18992225 | MS.gene58461:CDS | 30.0% | |
| GCCAATATATGTATACATGT+TGG | - | chr8.4:18990395-18990414 | None:intergenic | 30.0% | |
| TAAGTCTTGCATAATGCAAA+TGG | - | chr8.4:18990544-18990563 | None:intergenic | 30.0% | |
| TCAGATTGTTTGAATTTGTG+GGG | + | chr8.4:18989996-18990015 | MS.gene58461:intron | 30.0% | |
| TCATGCAAGAAGGATAATAT+TGG | + | chr8.4:18990155-18990174 | MS.gene58461:intron | 30.0% | |
| TGTACTCTACTTCAATTCAA+GGG | - | chr8.4:18990644-18990663 | None:intergenic | 30.0% | |
| TTCAATCAAATCATCATCAG+TGG | - | chr8.4:18992198-18992217 | None:intergenic | 30.0% | |
| TTGTACTCTACTTCAATTCA+AGG | - | chr8.4:18990645-18990664 | None:intergenic | 30.0% | |
| ! | CAAGTTCAGTAAGTTTTTGT+TGG | - | chr8.4:18991423-18991442 | None:intergenic | 30.0% |
| ! | TGGTTCCAAGATTTTTCTTT+TGG | - | chr8.4:18991765-18991784 | None:intergenic | 30.0% |
| ! | TTGTCTAAAATCTAATGCCT+TGG | + | chr8.4:18991988-18992007 | MS.gene58461:intron | 30.0% |
| ! | TTTTCTTCAGCACTTGTAAT+AGG | - | chr8.4:18992052-18992071 | None:intergenic | 30.0% |
| !! | ACTTTTTAACTGACCTACTA+CGG | - | chr8.4:18991849-18991868 | None:intergenic | 30.0% |
| !! | CTTTTGGCTAATTTCCTTTT+TGG | - | chr8.4:18991671-18991690 | None:intergenic | 30.0% |
| !!! | AGTGGATATCTTTGAAGTTT+TGG | - | chr8.4:18989816-18989835 | None:intergenic | 30.0% |
| !!! | ATATGTTGGTTTTGTCTTGT+AGG | + | chr8.4:18992163-18992182 | MS.gene58461:intron | 30.0% |
| !!! | TTTTGGCTAGTTTCCTTTTT+GGG | - | chr8.4:18991748-18991767 | None:intergenic | 30.0% |
| AAGCTTGAAACCAATAAGAG+TGG | + | chr8.4:18991883-18991902 | MS.gene58461:CDS | 35.0% | |
| AGCAAAAAGTAACAACACCA+AGG | - | chr8.4:18992008-18992027 | None:intergenic | 35.0% | |
| AGCTTGAAACCAATAAGAGT+GGG | + | chr8.4:18991884-18991903 | MS.gene58461:CDS | 35.0% | |
| AGGAGAAATGACTTGAATAG+AGG | - | chr8.4:18991629-18991648 | None:intergenic | 35.0% | |
| AGGAGAAGTGACTTGAATAA+AGG | - | chr8.4:18991707-18991726 | None:intergenic | 35.0% | |
| GCAATTTCAAAATCTGCTTC+TGG | + | chr8.4:18991814-18991833 | MS.gene58461:CDS | 35.0% | |
| GTGCCTAAAGATACATGTTA+AGG | + | chr8.4:18990277-18990296 | MS.gene58461:intron | 35.0% | |
| TCTTGTCTTCAGCTTCATAT+TGG | + | chr8.4:18990956-18990975 | MS.gene58461:CDS | 35.0% | |
| TTGATCTTGTCTCAGAGATT+GGG | - | chr8.4:18990846-18990865 | None:intergenic | 35.0% | |
| TTTATTCAAGTCACTTCTCC+TGG | + | chr8.4:18991706-18991725 | MS.gene58461:CDS | 35.0% | |
| ! | AAGACGACTTGATTAGTTCA+TGG | - | chr8.4:18991322-18991341 | None:intergenic | 35.0% |
| ! | AGACGACTTGATTAGTTCAT+GGG | - | chr8.4:18991321-18991340 | None:intergenic | 35.0% |
| ! | AGGCAGTGAGATTTTTCTTT+TGG | - | chr8.4:18991687-18991706 | None:intergenic | 35.0% |
| ! | CAGTAAGTTTTTGTTGGTGT+CGG | - | chr8.4:18991417-18991436 | None:intergenic | 35.0% |
| ! | CATTTTCAGAGAGCTTGATT+TGG | - | chr8.4:18990987-18991006 | None:intergenic | 35.0% |
| ! | GAAAAGCACAACATTTCACT+TGG | + | chr8.4:18991009-18991028 | MS.gene58461:CDS | 35.0% |
| ! | GTTTTGTCTTGTAGGATGTT+CGG | + | chr8.4:18992171-18992190 | MS.gene58461:intron | 35.0% |
| ! | TCGTCTTGTAATTTCTGGAA+GGG | - | chr8.4:18991376-18991395 | None:intergenic | 35.0% |
| !! | TCTGAGATTTTCTCTCAACT+TGG | - | chr8.4:18991785-18991804 | None:intergenic | 35.0% |
| !! | TTATTGGTTTCAAGCTTGCT+TGG | - | chr8.4:18991880-18991899 | None:intergenic | 35.0% |
| !!! | CTTTTGGCTAGTTTCCTTTT+TGG | - | chr8.4:18991749-18991768 | None:intergenic | 35.0% |
| AACCATAGAGTCACCCAAAA+AGG | + | chr8.4:18991732-18991751 | MS.gene58461:CDS | 40.0% | |
| AAGAGTGGGGTCAAGAAATA+TGG | + | chr8.4:18991898-18991917 | MS.gene58461:CDS | 40.0% | |
| AGGAAAGCTGATGCTAAAGA+AGG | + | chr8.4:18991922-18991941 | MS.gene58461:CDS | 40.0% | |
| CCAATGCTTCTCAATCTAAG+AGG | + | chr8.4:18989886-18989905 | MS.gene58461:CDS | 40.0% | |
| CTTGATCTTGTCTCAGAGAT+TGG | - | chr8.4:18990847-18990866 | None:intergenic | 40.0% | |
| GATCTGAAAATCTCAGAGAC+CGG | - | chr8.4:18990913-18990932 | None:intergenic | 40.0% | |
| GCTTGAAACCAATAAGAGTG+GGG | + | chr8.4:18991885-18991904 | MS.gene58461:CDS | 40.0% | |
| GGAGTTGTAGATGATTTGAC+AGG | - | chr8.4:18990796-18990815 | None:intergenic | 40.0% | |
| TATTTCACAGATGCCAGAAG+AGG | + | chr8.4:18991516-18991535 | MS.gene58461:CDS | 40.0% | |
| TCAAAGATATCCACTGCGTT+CGG | + | chr8.4:18989821-18989840 | MS.gene58461:CDS | 40.0% | |
| TCAGCTCGTCTTGTAATTTC+TGG | - | chr8.4:18991381-18991400 | None:intergenic | 40.0% | |
| TGATCTTGTCTCAGAGATTG+GGG | - | chr8.4:18990845-18990864 | None:intergenic | 40.0% | |
| TGCAATCGCATCATGATCTT+TGG | + | chr8.4:18991224-18991243 | MS.gene58461:intron | 40.0% | |
| TTTCTTGACCCCACTCTTAT+TGG | - | chr8.4:18991896-18991915 | None:intergenic | 40.0% | |
| ! | ACCTACACTTTGGCTTACAT+TGG | - | chr8.4:18990710-18990729 | None:intergenic | 40.0% |
| ! | CCTCTTAGATTGAGAAGCAT+TGG | - | chr8.4:18989889-18989908 | None:intergenic | 40.0% |
| ! | CTCGTCTTGTAATTTCTGGA+AGG | - | chr8.4:18991377-18991396 | None:intergenic | 40.0% |
| ! | TGGAGAACAAGTGAAAGTAC+TGG | + | chr8.4:18991441-18991460 | MS.gene58461:CDS | 40.0% |
| ! | TGGATTCTTCAAACTAGCCT+TGG | + | chr8.4:18991029-18991048 | MS.gene58461:CDS | 40.0% |
| !! | ATTCTTCAAACTAGCCTTGG+AGG | + | chr8.4:18991032-18991051 | MS.gene58461:CDS | 40.0% |
| !! | CAATCTCTGAGACAAGATCA+AGG | + | chr8.4:18990845-18990864 | MS.gene58461:CDS | 40.0% |
| !!! | TTCCTTTTTGGGTGACTCTA+TGG | - | chr8.4:18991737-18991756 | None:intergenic | 40.0% |
| ACAGGATTAGAGAGCCTTCT+TGG | - | chr8.4:18990778-18990797 | None:intergenic | 45.0% | |
| ACTTCTTCTACCATGGCTAC+TGG | + | chr8.4:18991574-18991593 | MS.gene58461:CDS | 45.0% | |
| AGAGGCAGTGTTTAAGCACT+TGG | - | chr8.4:18991611-18991630 | None:intergenic | 45.0% | |
| AGGCAGTGTTTAAGCACTTG+GGG | - | chr8.4:18991609-18991628 | None:intergenic | 45.0% | |
| ATCTACAACTCCGAGTCCAA+AGG | + | chr8.4:18990804-18990823 | MS.gene58461:CDS | 45.0% | |
| CAAGTGCTAAACCACCAAGA+AGG | + | chr8.4:18990761-18990780 | MS.gene58461:CDS | 45.0% | |
| CTGGTAGTTTGAACCGTAGT+AGG | + | chr8.4:18991833-18991852 | MS.gene58461:CDS | 45.0% | |
| CTTCAGCACTTCTTCTACCA+TGG | + | chr8.4:18991567-18991586 | MS.gene58461:CDS | 45.0% | |
| GAGGCAGTGTTTAAGCACTT+GGG | - | chr8.4:18991610-18991629 | None:intergenic | 45.0% | |
| GCCAATGTAAGCCAAAGTGT+AGG | + | chr8.4:18990706-18990725 | MS.gene58461:CDS | 45.0% | |
| GTCCTTGCCAGAGAAATCAA+GGG | - | chr8.4:18990734-18990753 | None:intergenic | 45.0% | |
| GTGGGGTCAAGAAATATGGA+AGG | + | chr8.4:18991902-18991921 | MS.gene58461:CDS | 45.0% | |
| TGTCCTTGCCAGAGAAATCA+AGG | - | chr8.4:18990735-18990754 | None:intergenic | 45.0% | |
| ! | ACTCGTTCGTCTGATGATGA+AGG | + | chr8.4:18991541-18991560 | MS.gene58461:CDS | 45.0% |
| !! | AATCAAGGGCACCTACACTT+TGG | - | chr8.4:18990720-18990739 | None:intergenic | 45.0% |
| !! | GGTGACTCTATGGTTTTACC+AGG | - | chr8.4:18991727-18991746 | None:intergenic | 45.0% |
| !! | TCTCTGAGACAAGATCAAGG+AGG | + | chr8.4:18990848-18990867 | MS.gene58461:CDS | 45.0% |
| !! | TGAGAAGCATTGGTGCTAAC+AGG | - | chr8.4:18989879-18989898 | None:intergenic | 45.0% |
| !! | TTCCTTTTTGGGCGACTCTA+TGG | - | chr8.4:18991659-18991678 | None:intergenic | 45.0% |
| AAATCTCAGAGACCGGCGTT+CGG | - | chr8.4:18990906-18990925 | None:intergenic | 50.0% | |
| AGCCATAGAGTCGCCCAAAA+AGG | + | chr8.4:18991654-18991673 | MS.gene58461:CDS | 50.0% | |
| GACGAACGAGTTTCCTCTTC+TGG | - | chr8.4:18991532-18991551 | None:intergenic | 50.0% | |
| GAGACAAGATCAAGGAGGTC+TGG | + | chr8.4:18990853-18990872 | MS.gene58461:CDS | 50.0% | |
| GGATTAGAGAGCCTTCTTGG+TGG | - | chr8.4:18990775-18990794 | None:intergenic | 50.0% | |
| GGCAGTGTTTAAGCACTTGG+GGG | - | chr8.4:18991608-18991627 | None:intergenic | 50.0% | |
| GGTCAGTTTACCAGTAGCCA+TGG | - | chr8.4:18991587-18991606 | None:intergenic | 50.0% | |
| GTAGGTGCCCTTGATTTCTC+TGG | + | chr8.4:18990724-18990743 | MS.gene58461:CDS | 50.0% | |
| GTTATGTTGCCAACCGCCTT+TGG | - | chr8.4:18990823-18990842 | None:intergenic | 50.0% | |
| TACAACTCCGAGTCCAAAGG+CGG | + | chr8.4:18990807-18990826 | MS.gene58461:CDS | 50.0% | |
| TGCCCTTGATTTCTCTGGCA+AGG | + | chr8.4:18990729-18990748 | MS.gene58461:CDS | 50.0% | |
| ! | TGCATCTGGCTTCTGTTCCT+TGG | - | chr8.4:18989856-18989875 | None:intergenic | 50.0% |
| !! | GGCGACTCTATGGCTTTAAC+AGG | - | chr8.4:18991649-18991668 | None:intergenic | 50.0% |
| !! | TTCAAACTAGCCTTGGAGGC+AGG | + | chr8.4:18991036-18991055 | MS.gene58461:CDS | 50.0% |
| !! | TTGGTGCTAACAGGTGCATC+TGG | - | chr8.4:18989870-18989889 | None:intergenic | 50.0% |
| AATCTCAGAGACCGGCGTTC+GGG | - | chr8.4:18990905-18990924 | None:intergenic | 55.0% | |
| GATCTAGAAGCCGAACGCAG+TGG | - | chr8.4:18989834-18989853 | None:intergenic | 55.0% | |
| GCGTTCGGCTTCTAGATCCA+AGG | + | chr8.4:18989836-18989855 | MS.gene58461:CDS | 55.0% | |
| TACCTCACATCCTGCCTCCA+AGG | - | chr8.4:18991049-18991068 | None:intergenic | 55.0% | |
| TCAAACCAGAACCCGAACGC+CGG | + | chr8.4:18990891-18990910 | MS.gene58461:CDS | 55.0% | |
| TGTAGTCTAGCCCGCAACCA+CGG | - | chr8.4:18991285-18991304 | None:intergenic | 55.0% | |
| TTGCCAACCGCCTTTGGACT+CGG | - | chr8.4:18990817-18990836 | None:intergenic | 55.0% | |
| !! | GGGTTCTGGTTTGAGGCTCT+TGG | - | chr8.4:18990885-18990904 | None:intergenic | 55.0% |
| ACTCCGAGTCCAAAGGCGGT+TGG | + | chr8.4:18990811-18990830 | MS.gene58461:CDS | 60.0% | |
| AGCCTTGGAGGCAGGATGTG+AGG | + | chr8.4:18991044-18991063 | MS.gene58461:CDS | 60.0% | |
| TACATGCGTGGCCTCAACCG+TGG | + | chr8.4:18991265-18991284 | MS.gene58461:intron | 60.0% | |
| !! | GGCGTTCGGGTTCTGGTTTG+AGG | - | chr8.4:18990892-18990911 | None:intergenic | 60.0% |
| CGTGGCCTCAACCGTGGTTG+CGG | + | chr8.4:18991271-18991290 | MS.gene58461:intron | 65.0% | |
| CTAGCCCGCAACCACGGTTG+AGG | - | chr8.4:18991279-18991298 | None:intergenic | 65.0% | |
| GTGGCCTCAACCGTGGTTGC+GGG | + | chr8.4:18991272-18991291 | MS.gene58461:intron | 65.0% | |
| ! | AGAGACCGGCGTTCGGGTTC+TGG | - | chr8.4:18990899-18990918 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 18989793 | 18992226 | 18989793 | ID=MS.gene58461 |
| chr8.4 | mRNA | 18989793 | 18992226 | 18989793 | ID=MS.gene58461.t1;Parent=MS.gene58461 |
| chr8.4 | exon | 18989793 | 18989907 | 18989793 | ID=MS.gene58461.t1.exon1;Parent=MS.gene58461.t1 |
| chr8.4 | CDS | 18989793 | 18989907 | 18989793 | ID=cds.MS.gene58461.t1;Parent=MS.gene58461.t1 |
| chr8.4 | exon | 18990693 | 18991065 | 18990693 | ID=MS.gene58461.t1.exon2;Parent=MS.gene58461.t1 |
| chr8.4 | CDS | 18990693 | 18991065 | 18990693 | ID=cds.MS.gene58461.t1;Parent=MS.gene58461.t1 |
| chr8.4 | exon | 18991373 | 18991943 | 18991373 | ID=MS.gene58461.t1.exon3;Parent=MS.gene58461.t1 |
| chr8.4 | CDS | 18991373 | 18991943 | 18991373 | ID=cds.MS.gene58461.t1;Parent=MS.gene58461.t1 |
| chr8.4 | exon | 18992038 | 18992081 | 18992038 | ID=MS.gene58461.t1.exon4;Parent=MS.gene58461.t1 |
| chr8.4 | CDS | 18992038 | 18992081 | 18992038 | ID=cds.MS.gene58461.t1;Parent=MS.gene58461.t1 |
| chr8.4 | exon | 18992185 | 18992226 | 18992185 | ID=MS.gene58461.t1.exon5;Parent=MS.gene58461.t1 |
| chr8.4 | CDS | 18992185 | 18992226 | 18992185 | ID=cds.MS.gene58461.t1;Parent=MS.gene58461.t1 |
| Gene Sequence |
| Protein sequence |
