AlfalfaGEDB | MS.gene59513

M. sativa cultivar XinJiangDaYe / MS.gene59513

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59513.t1	XP_003592995.2	100	127	0	0	1	127	424	550	1.90E-64	255.4

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59513.t1	A0A072V445	100.0	127	0	0	1	127	424	550	1.4e-64	255.4

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene59513	0.815091	1.10E-51	-1.69E-46
MS.gene050306	MS.gene59513	0.805863	1.09E-49	-1.69E-46
MS.gene050361	MS.gene59513	0.810833	9.47E-51	-1.69E-46
MS.gene050384	MS.gene59513	0.802537	5.35E-49	-1.69E-46
MS.gene050646	MS.gene59513	0.811453	6.95E-51	-1.69E-46
MS.gene051066	MS.gene59513	0.817019	4.10E-52	-1.69E-46
MS.gene051198	MS.gene59513	0.823616	1.26E-53	-1.69E-46
MS.gene051800	MS.gene59513	0.807427	5.08E-50	-1.69E-46
MS.gene052674	MS.gene59513	0.800713	1.27E-48	-1.69E-46
MS.gene052675	MS.gene59513	0.80648	8.06E-50	-1.69E-46

Showing 1 to 10 of 21 entries

Previous1 2 3Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59513.t1	MTR_2g006520	100.000	127	0	0	1	127	424	550	4.69e-86	271
MS.gene59513.t1	MTR_2g006520	100.000	127	0	0	1	127	424	550	4.92e-85	271

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59513.t1	AT1G22930	64.394	132	40	2	1	130	418	544	1.01e-49	171
MS.gene59513.t1	AT1G22930	64.394	132	40	2	1	130	307	433	1.06e-49	171
MS.gene59513.t1	AT4G09150	56.250	96	40	2	1	95	414	508	6.35e-26	103
MS.gene59513.t1	AT4G09150	56.250	96	40	2	1	95	414	508	6.41e-26	103

Showing 1 to 4 of 4 entries

Previous1Next

Find 26 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTCAAACTACCTTCA+AGG	0.438903	8.1:+74838800	None:intergenic
AACAAATTCTTGAGCAGACT+TGG	0.423461	8.1:+74839961	None:intergenic
AACCTTCAAACTACCTTCAA+GGG	0.529898	8.1:+74838801	None:intergenic
AAGTTAACTCCAGAAGGAGT+TGG	0.569801	8.1:-74839698	MS.gene59513:CDS
AATTATAGAACTTGAGTGTA+TGG	0.401215	8.1:-74838728	MS.gene59513:CDS
ACTTGCAAGTTAACTCCAGA+AGG	0.572489	8.1:-74839704	MS.gene59513:CDS
AGCAGCAAGCTGTGATCTGA+AGG	0.542055	8.1:+74839847	None:intergenic
ATTATAGAACTTGAGTGTAT+GGG	0.576982	8.1:-74838727	MS.gene59513:CDS
ATTGTACTGAAAACTGCATC+TGG	0.442866	8.1:+74840007	None:intergenic
CAACTTGTTACTTCCCTTGA+AGG	0.405951	8.1:-74838814	MS.gene59513:CDS

Showing 1 to 10 of 26 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGAATCCAAGTACAAAGTAA+GGG	-	chr8.1:74839773-74839792	MS.gene59513:CDS	30.0%
ATATATGCAAATGCGGAAAT+TGG	+	chr8.1:74839346-74839365	None:intergenic	30.0%
GCGAAAAATATATGCAAATG+CGG	+	chr8.1:74839353-74839372	None:intergenic	30.0%
GCTGATAAAGATTATACAAG+AGG	-	chr8.1:74838812-74838831	MS.gene59513:CDS	30.0%
TAGAATCCAAGTACAAAGTA+AGG	-	chr8.1:74839772-74839791	MS.gene59513:CDS	30.0%
TTTGTTAGGAAAATGCTTCA+TGG	+	chr8.1:74839545-74839564	None:intergenic	30.0%
AAAACTCACAGCTATTGACA+TGG	+	chr8.1:74839106-74839125	None:intergenic	35.0%
AAACCTTCAAACTACCTTCA+AGG	+	chr8.1:74839939-74839958	None:intergenic	35.0%
AACAAATTCTTGAGCAGACT+TGG	+	chr8.1:74838778-74838797	None:intergenic	35.0%
AACCTTCAAACTACCTTCAA+GGG	+	chr8.1:74839938-74839957	None:intergenic	35.0%

Showing 1 to 10 of 95 entries

Previous1 2 3 4 5…10Next

Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	74838714	74840044	74838714	ID=MS.gene59513
chr8.1	mRNA	74838714	74840044	74838714	ID=MS.gene59513.t1;Parent=MS.gene59513
chr8.1	exon	74839664	74840044	74839664	ID=MS.gene59513.t1.exon1;Parent=MS.gene59513.t1
chr8.1	CDS	74839664	74840044	74839664	ID=cds.MS.gene59513.t1;Parent=MS.gene59513.t1
chr8.1	exon	74838714	74838842	74838714	ID=MS.gene59513.t1.exon2;Parent=MS.gene59513.t1
chr8.1	CDS	74838714	74838842	74838714	ID=cds.MS.gene59513.t1;Parent=MS.gene59513.t1

Gene Sequence

>MS.gene59513

ATGATATTGGGTCATCCAGATGCAGTTTTCAGTACAATGGGCGAGCGTGAAATTGCTTTGGCCAAGTCTGCTCAAGAATTTGTTAAAATGTTTGAGCTGCTGATAAAGATTATACAAGAGGGGCCAATAAAAAGTTCTGATGAAGAATCTGTCTCAGCTTCTGTGAAGCGATGTACCTTCAGATCACAGCTTGCTGCTTTTGATAAAGCATGGTGCTCGTATTTGAATTGTTTTGTGGTCTGGAAGGTTAAGGATGCTCGATCTTTGGAGGATGATTTGGTTAGAGCAGCTTGCCAGCTTGAGGCTTCTATGATTCAAACTTGCAAGTTAACTCCAGAAGGAGTTGGTATTAGTCATGATATGAAAGCTATTCAGCATCAGGTAATTTTCCATGTCAATAGCTGTGAGTTTTCCTTTTCAATGGTAGTTATTGATGAAATTTTCAAGTAATGTCATGCAACATCAATGACCTCAAAAGCTGACTTCATGCTCTTCTCTTGTGAGCATGGCATGTCCTCAGTCTGCACTAACAAATAATTTCCGCAGTTCTCTTGACGGTACGTATATATTCAAATAATTTCCGCATTTGAAATTTTACTGTACATTTCATAGTAATGGGATGTACCGCACCAATTTCCGCATTTGCATATATTTTTCGCCCAGGCTCTATGAAATTCCTGGCTCCGCCACTGCACACGACCATGAATAGCGGAAATCATGCGGTGGAAAGCAAAACATGGAGGGAGAGAGAATTCAGTTGGTTAAAGGAAAAATAACATCCAAGGGTGGCAATTAATTCGTCGATTGTCGTGCATGCTTTTTCTCGTACCATGAAGCATTTTCCTAACAAATTATGCCAATTATCACAATAAAAAATAAACTTTAACACTAATTCTTAATTGTGAACTCTGTGATCTTGCGTGAACCTTTGGTGATGGCACGAAGTTGACGCGAACGTGTTTGCATCTGCATGAAGCAGTAATTGTGAATCTCTTTTAGACTTGCCATGAATTTTGAAATCGGATAAAGGGCGGAAGAACCGAAAGCGAAATTGTGGATAGAATCCAAGTACAAAGTAAGGGTTGCTCCTCCCACTCGGAATTCGTGGGATTTTCATTTCCGTATTCGCGATCAGCATGGTTGAGATAGACCGCTGGAATTTCTGGAGAAACCAAAAATTTCACCATTTTCGTATCTCACAGCACCTTCAACTTGTTACTTCCCTTGAAGGTAGTTTGAAGGTTTTTGAAGTAGCAGCAGTAACATGTTGTGCTTCTGACGTAGAAGAAGTAGGAATTATAGAACTTGAGTGTATGGGACAGATGTCATAA

Protein sequence

>MS.gene59513.t1

MILGHPDAVFSTMGEREIALAKSAQEFVKMFELLIKIIQEGPIKSSDEESVSASVKRCTFRSQLAAFDKAWCSYLNCFVVWKVKDARSLEDDLVRAACQLEASMIQTCKLTPEGVGISHDMKAIQHQHLQLVTSLEGSLKVFEVAAVTCCASDVEEVGIIELECMGQMS