Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59655.t1 | XP_004501205.1 | 86.4 | 118 | 16 | 0 | 226 | 343 | 188 | 305 | 8.40E-52 | 214.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59655.t1 | A0A1S2Y8Q7 | 86.4 | 118 | 16 | 0 | 226 | 343 | 188 | 305 | 6.0e-52 | 214.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene59655 | 0.805537 | 1.27E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene59655 | 0.803668 | 3.12E-49 | -1.69E-46 |
| MS.gene054236 | MS.gene59655 | 0.808589 | 2.88E-50 | -1.69E-46 |
| MS.gene054775 | MS.gene59655 | 0.820666 | 6.08E-53 | -1.69E-46 |
| MS.gene055926 | MS.gene59655 | 0.802268 | 6.08E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene59655 | 0.80607 | 9.83E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59655 | MS.gene049260 | PPI |
| MS.gene59655 | MS.gene06367 | PPI |
| MS.gene59655 | MS.gene013282 | PPI |
| MS.gene59655 | MS.gene81663 | PPI |
| MS.gene59655 | MS.gene81660 | PPI |
| MS.gene59655 | MS.gene90626 | PPI |
| MS.gene59655 | MS.gene81658 | PPI |
| MS.gene59655 | MS.gene98540 | PPI |
| MS.gene59655 | MS.gene40923 | PPI |
| MS.gene59655 | MS.gene29768 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59655.t1 | MTR_3g109330 | 97.068 | 307 | 9 | 0 | 44 | 350 | 6 | 312 | 0.0 | 589 |
| MS.gene59655.t1 | MTR_3g109330 | 91.205 | 307 | 9 | 1 | 44 | 350 | 6 | 294 | 0.0 | 533 |
| MS.gene59655.t1 | MTR_5g048720 | 70.707 | 99 | 29 | 0 | 350 | 448 | 51 | 149 | 8.30e-40 | 142 |
| MS.gene59655.t1 | MTR_8g040975 | 72.277 | 101 | 26 | 1 | 350 | 448 | 51 | 151 | 1.29e-37 | 139 |
| MS.gene59655.t1 | MTR_8g057120 | 68.317 | 101 | 30 | 1 | 356 | 454 | 156 | 256 | 6.03e-37 | 137 |
| MS.gene59655.t1 | MTR_4g088560 | 65.657 | 99 | 23 | 2 | 352 | 448 | 12 | 101 | 6.49e-28 | 109 |
| MS.gene59655.t1 | MTR_3g109310 | 86.792 | 53 | 6 | 1 | 1 | 52 | 1 | 53 | 1.68e-22 | 98.2 |
| MS.gene59655.t1 | MTR_4g014530 | 65.333 | 75 | 22 | 2 | 384 | 454 | 1 | 75 | 1.30e-21 | 89.7 |
| MS.gene59655.t1 | MTR_4g126120 | 82.609 | 46 | 8 | 0 | 448 | 493 | 136 | 181 | 3.77e-18 | 85.1 |
| MS.gene59655.t1 | MTR_4g126120 | 82.609 | 46 | 8 | 0 | 448 | 493 | 127 | 172 | 4.01e-18 | 84.7 |
| MS.gene59655.t1 | MTR_4g013040 | 68.627 | 51 | 14 | 2 | 351 | 401 | 153 | 201 | 5.02e-14 | 71.2 |
| MS.gene59655.t1 | MTR_2g039570 | 65.217 | 46 | 16 | 0 | 448 | 493 | 123 | 168 | 1.53e-13 | 71.2 |
| MS.gene59655.t1 | MTR_4g124530 | 76.316 | 38 | 9 | 0 | 450 | 487 | 29 | 66 | 6.33e-13 | 64.3 |
| MS.gene59655.t1 | MTR_2g039510 | 60.870 | 46 | 18 | 0 | 448 | 493 | 131 | 176 | 2.29e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59655.t1 | AT4G31340 | 56.552 | 290 | 123 | 1 | 61 | 350 | 26 | 312 | 1.04e-103 | 317 |
| MS.gene59655.t1 | AT4G31340 | 58.156 | 282 | 114 | 2 | 69 | 350 | 35 | 312 | 1.11e-103 | 317 |
| MS.gene59655.t1 | AT2G24420 | 51.133 | 309 | 136 | 3 | 47 | 350 | 17 | 315 | 3.03e-98 | 303 |
| MS.gene59655.t1 | AT2G24420 | 51.133 | 309 | 136 | 3 | 47 | 350 | 17 | 315 | 3.03e-98 | 303 |
| MS.gene59655.t1 | AT4G30090 | 28.731 | 268 | 126 | 6 | 78 | 338 | 44 | 253 | 3.19e-21 | 95.9 |
Find 104 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAATTGAGTTGATCTAAT+TGG | 0.198323 | 5.4:+42890878 | None:intergenic |
| TCGTCTCAGAAACAACTTTA+TGG | 0.201611 | 5.4:-42886905 | MS.gene59655:CDS |
| AAGTAACGAGGGAGAAAATT+AGG | 0.224956 | 5.4:+42890950 | None:intergenic |
| AAAAGGCACAAGCTGGAAAA+TGG | 0.236033 | 5.4:-42888411 | MS.gene59655:CDS |
| TCCTGGATACGTGCATTCTA+TGG | 0.253057 | 5.4:-42887737 | MS.gene59655:CDS |
| ATCCTTAAGTGAATCAATTT+CGG | 0.272080 | 5.4:+42887621 | None:intergenic |
| GAAGCATTTGTCAAAGTGTT+TGG | 0.294876 | 5.4:-42887769 | MS.gene59655:CDS |
| AGTTTACCGGTAGGAGAGTT+TGG | 0.295352 | 5.4:+42891880 | None:intergenic |
| GAAACTTATACCTGATAATA+AGG | 0.301355 | 5.4:+42887974 | None:intergenic |
| AACACAAGAATTGAAGAAAA+AGG | 0.318070 | 5.4:-42890544 | MS.gene59655:CDS |
| GAATGAGGTTGCTTCTCTTC+AGG | 0.323946 | 5.4:-42890457 | MS.gene59655:intron |
| ACTTGCTCCCCACTTGAATA+AGG | 0.336673 | 5.4:-42888014 | MS.gene59655:CDS |
| GAATGCTACTCAACTTATCT+TGG | 0.345760 | 5.4:+42890490 | None:intergenic |
| TTGGATTGATACCGAGAGAT+TGG | 0.365345 | 5.4:+42890851 | None:intergenic |
| AATTGATTCACTTAAGGATA+AGG | 0.367364 | 5.4:-42887617 | MS.gene59655:CDS |
| CTTGCTCAGCTCTATTGCTT+TGG | 0.379031 | 5.4:+42889129 | None:intergenic |
| AGCCGAAATTGATTCACTTA+AGG | 0.382331 | 5.4:-42887623 | MS.gene59655:CDS |
| ATGGTGCTTGGCTTCCTCCT+TGG | 0.385003 | 5.4:-42888764 | MS.gene59655:CDS |
| ATGTGTAGATCCTTATTATC+AGG | 0.406758 | 5.4:-42887984 | MS.gene59655:intron |
| TGAATCTCGATTACGAGTTT+CGG | 0.410788 | 5.4:-42891959 | MS.gene59655:CDS |
| ACAACTTTATGGAGAGAATC+AGG | 0.420276 | 5.4:-42886894 | MS.gene59655:CDS |
| CCCATAGAATGCACGTATCC+AGG | 0.424178 | 5.4:+42887736 | None:intergenic |
| TGTTTCTGAGACGATCTTCA+AGG | 0.446327 | 5.4:+42886914 | None:intergenic |
| GTCATTGGATGCCGAGGAGC+AGG | 0.448017 | 5.4:-42890273 | MS.gene59655:CDS |
| AAAACAGTTGCCAACCTCTC+TGG | 0.456629 | 5.4:-42886958 | MS.gene59655:CDS |
| ATTGAATTGAAGACTAAGTC+AGG | 0.462909 | 5.4:-42886859 | MS.gene59655:CDS |
| GTATCCAAGTCTTGCCGATA+CGG | 0.463283 | 5.4:-42891937 | MS.gene59655:CDS |
| AGAAAGTGAACTGGGAATCT+CGG | 0.463402 | 5.4:-42890091 | MS.gene59655:CDS |
| AAAGGCACAAGCTGGAAAAT+GGG | 0.463620 | 5.4:-42888410 | MS.gene59655:CDS |
| GACCACTGTTCTTTCACAGC+TGG | 0.466702 | 5.4:+42888118 | None:intergenic |
| TAGAACGGCGTCGTCCTTTG+AGG | 0.467353 | 5.4:-42887671 | MS.gene59655:CDS |
| TTCGATGGAAACATCGGCTT+CGG | 0.467981 | 5.4:+42890927 | None:intergenic |
| GTTGGAAGTGATATCTCAAA+AGG | 0.468095 | 5.4:-42888589 | MS.gene59655:intron |
| TACGTGCATTCTATGGGACT+TGG | 0.471151 | 5.4:-42887730 | MS.gene59655:CDS |
| TTCACAAGTTGATATCTTGA+AGG | 0.472450 | 5.4:-42887593 | MS.gene59655:CDS |
| ATCATAGCGGCCAGAGAGGT+TGG | 0.474073 | 5.4:+42886948 | None:intergenic |
| CTCTGGCCGCTATGATCTAA+AGG | 0.475167 | 5.4:-42886941 | MS.gene59655:CDS |
| AGTCCGTCGCTGAGAGTCAT+TGG | 0.476512 | 5.4:-42888632 | MS.gene59655:CDS |
| TACTTCTCACCGTGCTAGAA+CGG | 0.478897 | 5.4:-42887686 | MS.gene59655:CDS |
| AAAACAGTGAGAAAGTGAAC+TGG | 0.480727 | 5.4:-42890100 | MS.gene59655:CDS |
| GATACCGAGAGATTGGATCT+TGG | 0.482735 | 5.4:+42890858 | None:intergenic |
| AGTAACGAGGGAGAAAATTA+GGG | 0.483348 | 5.4:+42890951 | None:intergenic |
| GAAGTCAGTGCTTGCACATG+AGG | 0.495088 | 5.4:+42888073 | None:intergenic |
| GAAAGTGAACTGGGAATCTC+GGG | 0.506911 | 5.4:-42890090 | MS.gene59655:CDS |
| CATTCAATCCTTGCAGAATG+AGG | 0.508270 | 5.4:-42890472 | MS.gene59655:CDS |
| ATGATCAGACTCATGGTGCT+TGG | 0.513875 | 5.4:-42888776 | MS.gene59655:intron |
| TATTTAGGAAGAAATGTTGA+AGG | 0.522472 | 5.4:-42889170 | MS.gene59655:intron |
| CGCTTTCCAAACTCTCCTAC+CGG | 0.524112 | 5.4:-42891886 | MS.gene59655:intron |
| GCCTCCGTATCGGCAAGACT+TGG | 0.526307 | 5.4:+42891933 | None:intergenic |
| TGCCGATGAACTACAGAAGC+AGG | 0.539163 | 5.4:-42890231 | MS.gene59655:intron |
| CATCCTCTCATTAGCCTCAA+AGG | 0.540810 | 5.4:+42887657 | None:intergenic |
| CCTGGATACGTGCATTCTAT+GGG | 0.546199 | 5.4:-42887736 | MS.gene59655:CDS |
| TGAACATGGGAAGCCTCTGT+TGG | 0.550076 | 5.4:-42888607 | MS.gene59655:CDS |
| GATACGGAGGCATTCATGAC+CGG | 0.550151 | 5.4:-42891921 | MS.gene59655:CDS |
| GGCCGCTATGATCTAAAGGC+TGG | 0.551560 | 5.4:-42886937 | MS.gene59655:CDS |
| TGGAGAGAATCAGGAAGGAA+TGG | 0.552037 | 5.4:-42886885 | MS.gene59655:CDS |
| GAGAGTCATTGGAATGAACA+TGG | 0.556843 | 5.4:-42888621 | MS.gene59655:CDS |
| TGCCGAGGAGCAGGTTGGAA+AGG | 0.563199 | 5.4:-42890264 | MS.gene59655:CDS |
| ACAGGTTCAAAAGATAAATG+AGG | 0.567365 | 5.4:-42889337 | MS.gene59655:intron |
| GTGTTTGGAAAAGAACATCC+TGG | 0.570578 | 5.4:-42887754 | MS.gene59655:CDS |
| CATCGGCTTCGGAAGTAACG+AGG | 0.570944 | 5.4:+42890938 | None:intergenic |
| AGAATCTTCGATGGAAACAT+CGG | 0.571464 | 5.4:+42890921 | None:intergenic |
| GAAAGCGGCGGAGCAAACTC+CGG | 0.584176 | 5.4:+42891902 | None:intergenic |
| GGTCATGAATGCCTCCGTAT+CGG | 0.589824 | 5.4:+42891923 | None:intergenic |
| ACGTGCATTCTATGGGACTT+GGG | 0.590500 | 5.4:-42887729 | MS.gene59655:CDS |
| TGAAGTTTACAAGTCGTCAA+AGG | 0.591319 | 5.4:-42888041 | MS.gene59655:CDS |
| AGCCTTTCCAACCTGCTCCT+CGG | 0.598082 | 5.4:+42890262 | None:intergenic |
| GACCTGCTTCTGTAGTTCAT+CGG | 0.598679 | 5.4:+42890229 | None:intergenic |
| AAAATGGGCTGAACCTCATG+TGG | 0.599477 | 5.4:-42888395 | MS.gene59655:CDS |
| TGAGATATCACTTCCAACAG+AGG | 0.601782 | 5.4:+42888594 | None:intergenic |
| GTATAGCTCATCACAACTCA+AGG | 0.609606 | 5.4:-42886837 | MS.gene59655:CDS |
| AGGACGACGCCGTTCTAGCA+CGG | 0.610153 | 5.4:+42887677 | None:intergenic |
| GAGGGAGAAAATTAGGGCAA+CGG | 0.612042 | 5.4:+42890957 | None:intergenic |
| AATTCCAAGATCCAATCTCT+CGG | 0.613050 | 5.4:-42890862 | MS.gene59655:intron |
| TTGGATGCCGAGGAGCAGGT+TGG | 0.613773 | 5.4:-42890269 | MS.gene59655:CDS |
| CCGGCGAGCGATGGCCACAA+CGG | 0.619404 | 5.4:-42892003 | None:intergenic |
| AGAGGAATCAGAATCTTCGA+TGG | 0.619773 | 5.4:+42890912 | None:intergenic |
| AAAAGGGTCATTGGATGCCG+AGG | 0.621224 | 5.4:-42890279 | MS.gene59655:CDS |
| TGAGAAGTAGAAATTTGAGA+TGG | 0.623920 | 5.4:+42887700 | None:intergenic |
| TGATTTGAACTCAAAACTAG+AGG | 0.624974 | 5.4:-42890042 | MS.gene59655:CDS |
| AAACAGTGAGAAAGTGAACT+GGG | 0.625922 | 5.4:-42890099 | MS.gene59655:CDS |
| AATGTTGAAGGCAAAGCTAG+AGG | 0.629492 | 5.4:-42889158 | MS.gene59655:CDS |
| ATCAAGATCTGATTCCGTTG+TGG | 0.638603 | 5.4:+42891989 | None:intergenic |
| TAATTGGATCTTAAGAGCAG+AGG | 0.640351 | 5.4:+42890894 | None:intergenic |
| TCCAAGTCTTGCCGATACGG+AGG | 0.642233 | 5.4:-42891934 | MS.gene59655:CDS |
| TGTACACTATATTCGTAGCA+AGG | 0.642313 | 5.4:-42888736 | MS.gene59655:intron |
| AGAAGCAACCTCATTCTGCA+AGG | 0.645724 | 5.4:+42890464 | None:intergenic |
| CTTTATGGAGAGAATCAGGA+AGG | 0.645981 | 5.4:-42886890 | MS.gene59655:CDS |
| ACGTGCTCTTAAAGTTGCCG+AGG | 0.655385 | 5.4:-42889286 | MS.gene59655:intron |
| ATTCCAATGACTCTCAGCGA+CGG | 0.657060 | 5.4:+42888629 | None:intergenic |
| ATATAGTGTACAGCAAGCCA+AGG | 0.657714 | 5.4:+42888747 | None:intergenic |
| ATCGGCTTCGGAAGTAACGA+GGG | 0.658576 | 5.4:+42890939 | None:intergenic |
| GGTGTTAATGATCAGACTCA+TGG | 0.658662 | 5.4:-42888783 | MS.gene59655:intron |
| TAGTGTACAGCAAGCCAAGG+AGG | 0.659126 | 5.4:+42888750 | None:intergenic |
| CAAAGCAATAGAGCTGAGCA+AGG | 0.661315 | 5.4:-42889128 | MS.gene59655:intron |
| AGAGTCATTGGAATGAACAT+GGG | 0.671207 | 5.4:-42888620 | MS.gene59655:CDS |
| TAGGAGAGTTTGGAAAGCGG+CGG | 0.671217 | 5.4:+42891890 | None:intergenic |
| CGTCCTTTGAGGCTAATGAG+AGG | 0.681698 | 5.4:-42887660 | MS.gene59655:CDS |
| CGGTAGGAGAGTTTGGAAAG+CGG | 0.687279 | 5.4:+42891887 | None:intergenic |
| GTGGTCTGTGGTGAAAACAA+AGG | 0.693790 | 5.4:-42888101 | MS.gene59655:CDS |
| TGTGAAAGAACAGTGGTCTG+TGG | 0.702105 | 5.4:-42888113 | MS.gene59655:CDS |
| TTCCAGCTGTGAAAGAACAG+TGG | 0.708355 | 5.4:-42888120 | MS.gene59655:CDS |
| TTAGATCATAGCGGCCAGAG+AGG | 0.720127 | 5.4:+42886944 | None:intergenic |
| GGCCAGCCTTTAGATCATAG+CGG | 0.759109 | 5.4:+42886935 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGTATTTCTTATATAA+AGG | - | chr5.4:42890890-42890909 | MS.gene59655:CDS | 10.0% |
| !!! | ATATAAGAATTTTTTTTACT+TGG | + | chr5.4:42889920-42889939 | None:intergenic | 10.0% |
| !!! | GAAAAAATAATAATTTTGAA+GGG | + | chr5.4:42888521-42888540 | None:intergenic | 10.0% |
| !!! | TTAATTTTTTTTTCATTAAC+TGG | + | chr5.4:42889350-42889369 | None:intergenic | 10.0% |
| !! | ATGAAAAAAAAAAATGTTTG+TGG | - | chr5.4:42887394-42887413 | MS.gene59655:intron | 15.0% |
| !! | ATTATTATGATTAAAATGAG+AGG | + | chr5.4:42890957-42890976 | None:intergenic | 15.0% |
| !! | GCAAAAATAACATTAAAAAA+AGG | + | chr5.4:42887562-42887581 | None:intergenic | 15.0% |
| !! | TAAAAAAATGTATATGTTGA+TGG | - | chr5.4:42887817-42887836 | MS.gene59655:CDS | 15.0% |
| !!! | AGTTTTTTTACTGATAATTT+GGG | - | chr5.4:42887315-42887334 | MS.gene59655:intron | 15.0% |
| !!! | GGAAAAAATAATAATTTTGA+AGG | + | chr5.4:42888522-42888541 | None:intergenic | 15.0% |
| !!! | GTACTATATGATATTTATTT+TGG | - | chr5.4:42890260-42890279 | MS.gene59655:CDS | 15.0% |
| !!! | TATCAAAACATAATTTTGTT+AGG | - | chr5.4:42889434-42889453 | MS.gene59655:intron | 15.0% |
| !!! | TATTTTTATAGTAAACTATC+AGG | + | chr5.4:42889970-42889989 | None:intergenic | 15.0% |
| !!! | TTCTATTGATATTCTTATTT+AGG | - | chr5.4:42889642-42889661 | MS.gene59655:intron | 15.0% |
| !!! | TTTTAATTAAGTTCAATGTA+TGG | - | chr5.4:42891750-42891769 | MS.gene59655:intron | 15.0% |
| !! | AAAGAATATTAATCTTGTGT+AGG | + | chr5.4:42887709-42887728 | None:intergenic | 20.0% |
| !! | AAATGCTTCAAAAATAATAC+AGG | + | chr5.4:42888436-42888455 | None:intergenic | 20.0% |
| !! | AATAAAACAACCAAGTAAAA+CGG | + | chr5.4:42891447-42891466 | None:intergenic | 20.0% |
| !! | AATAAACTGACATTATTAGA+TGG | + | chr5.4:42889415-42889434 | None:intergenic | 20.0% |
| !! | ACAAATAGAGTCAAATTTAT+AGG | + | chr5.4:42887163-42887182 | None:intergenic | 20.0% |
| !! | ATTATTAGAAGATGTGAATA+AGG | + | chr5.4:42890157-42890176 | None:intergenic | 20.0% |
| !! | ATTCTTATATTATGTGACAT+TGG | - | chr5.4:42889930-42889949 | MS.gene59655:intron | 20.0% |
| !! | CAACATTTAAAAAGATTACA+TGG | + | chr5.4:42889752-42889771 | None:intergenic | 20.0% |
| !! | GTTAAAATACAGAAATCAAT+AGG | + | chr5.4:42890366-42890385 | None:intergenic | 20.0% |
| !! | TAAAAAGATTACATGGTTTA+GGG | + | chr5.4:42889745-42889764 | None:intergenic | 20.0% |
| !! | TAAAAATAAACTATCAGACA+AGG | - | chr5.4:42889982-42890001 | MS.gene59655:intron | 20.0% |
| !! | TTAAAAAGATTACATGGTTT+AGG | + | chr5.4:42889746-42889765 | None:intergenic | 20.0% |
| !! | TTCATCTATATACAAGAAAA+TGG | + | chr5.4:42889864-42889883 | None:intergenic | 20.0% |
| !!! | AATGATGATAATTGAGATTT+TGG | + | chr5.4:42887998-42888017 | None:intergenic | 20.0% |
| !!! | ATAATCATGGATAACTTTTA+AGG | + | chr5.4:42889790-42889809 | None:intergenic | 20.0% |
| !!! | CAGTTTTTTTACTGATAATT+TGG | - | chr5.4:42887314-42887333 | MS.gene59655:intron | 20.0% |
| !!! | GTATTATTTTTGAAGCATTT+TGG | - | chr5.4:42888436-42888455 | MS.gene59655:intron | 20.0% |
| !!! | TATTTTTTCCTCAGAAAAAA+GGG | - | chr5.4:42888532-42888551 | MS.gene59655:intron | 20.0% |
| !!! | TCCTAGTTTTTTAAATACTT+GGG | - | chr5.4:42890631-42890650 | MS.gene59655:intron | 20.0% |
| !!! | TTATGATGTAGTTTTTTGTA+TGG | - | chr5.4:42891669-42891688 | MS.gene59655:intron | 20.0% |
| !!! | TTATTTTTTCCTCAGAAAAA+AGG | - | chr5.4:42888531-42888550 | MS.gene59655:intron | 20.0% |
| !!! | TTTTATTAATTGATGCTTAC+TGG | - | chr5.4:42890023-42890042 | MS.gene59655:intron | 20.0% |
| !!! | TTTTTTTTCATTAACTGGTT+AGG | + | chr5.4:42889345-42889364 | None:intergenic | 20.0% |
| ! | AAAAAAGTTCACCAAAAACT+TGG | + | chr5.4:42888086-42888105 | None:intergenic | 25.0% |
| ! | AAAAAGATTACATGGTTTAG+GGG | + | chr5.4:42889744-42889763 | None:intergenic | 25.0% |
| ! | AACACAAGAATTGAAGAAAA+AGG | - | chr5.4:42888283-42888302 | MS.gene59655:intron | 25.0% |
| ! | AGATTAATATTCTTTGCACT+CGG | - | chr5.4:42887714-42887733 | MS.gene59655:CDS | 25.0% |
| ! | ATAAAACAACCAAGTAAAAC+GGG | + | chr5.4:42891446-42891465 | None:intergenic | 25.0% |
| ! | ATCCTTAAGTGAATCAATTT+CGG | + | chr5.4:42891209-42891228 | None:intergenic | 25.0% |
| ! | ATTATGATTAAAATGAGAGG+AGG | + | chr5.4:42890954-42890973 | None:intergenic | 25.0% |
| ! | ATTGAGATATATGAGAGAAA+GGG | - | chr5.4:42887338-42887357 | MS.gene59655:intron | 25.0% |
| ! | CTTCAATAAATTATAGATCC+AGG | - | chr5.4:42890310-42890329 | MS.gene59655:intron | 25.0% |
| ! | GAAACTTATACCTGATAATA+AGG | + | chr5.4:42890856-42890875 | None:intergenic | 25.0% |
| ! | GATTAGTAGTGTAATATTAG+TGG | - | chr5.4:42887671-42887690 | MS.gene59655:CDS | 25.0% |
| ! | GGCTAGTAATTTACAAATTT+AGG | - | chr5.4:42888172-42888191 | MS.gene59655:intron | 25.0% |
| ! | TACTATGAATTGAAGACATT+GGG | + | chr5.4:42887610-42887629 | None:intergenic | 25.0% |
| ! | TATTTAGGAAGAAATGTTGA+AGG | - | chr5.4:42889657-42889676 | MS.gene59655:intron | 25.0% |
| ! | TCAATTAGTTGAAATTACTG+AGG | - | chr5.4:42888139-42888158 | MS.gene59655:intron | 25.0% |
| ! | TCTTGTATATAGATGAATGA+AGG | - | chr5.4:42889867-42889886 | MS.gene59655:intron | 25.0% |
| ! | TGAGCAAGGTAATAATTTAT+TGG | - | chr5.4:42889713-42889732 | MS.gene59655:intron | 25.0% |
| ! | TTTGACTCTATTTGTTTAGT+TGG | - | chr5.4:42887168-42887187 | MS.gene59655:intron | 25.0% |
| !! | AAAGTTTGCTTAGTATGTTA+TGG | - | chr5.4:42887370-42887389 | MS.gene59655:intron | 25.0% |
| !! | AAGTTTGCTTAGTATGTTAT+GGG | - | chr5.4:42887371-42887390 | MS.gene59655:intron | 25.0% |
| !! | AATTACTGAGGAAATTTTTG+TGG | - | chr5.4:42888151-42888170 | MS.gene59655:intron | 25.0% |
| !! | AATTGATTCACTTAAGGATA+AGG | - | chr5.4:42891210-42891229 | MS.gene59655:intron | 25.0% |
| !! | ATGAATCTTTTTCTCTAACT+TGG | + | chr5.4:42888766-42888785 | None:intergenic | 25.0% |
| !! | ATTCTTTTACCTTATTCAAG+TGG | + | chr5.4:42890825-42890844 | None:intergenic | 25.0% |
| !! | CTTTCATACTTTTGATCTTT+AGG | - | chr5.4:42890488-42890507 | MS.gene59655:CDS | 25.0% |
| !! | TATTATGTGACATTGGTAAT+TGG | - | chr5.4:42889937-42889956 | MS.gene59655:intron | 25.0% |
| !! | TTATTCACATTGCCTATTTT+GGG | - | chr5.4:42889247-42889266 | MS.gene59655:intron | 25.0% |
| !! | TTCTTTTACCTTATTCAAGT+GGG | + | chr5.4:42890824-42890843 | None:intergenic | 25.0% |
| !!! | AAGTTTGTTCTTGTTATTTC+CGG | + | chr5.4:42887106-42887125 | None:intergenic | 25.0% |
| !!! | ATGATAATTTGTTAAGATGC+AGG | - | chr5.4:42890994-42891013 | MS.gene59655:intron | 25.0% |
| !!! | CTCCTAGTTTTTTAAATACT+TGG | - | chr5.4:42890630-42890649 | MS.gene59655:intron | 25.0% |
| !!! | TGTTAGGTGTTATTTTAACA+AGG | - | chr5.4:42891420-42891439 | MS.gene59655:intron | 25.0% |
| AAATAACAAATAACAGCGAG+TGG | + | chr5.4:42888491-42888510 | None:intergenic | 30.0% | |
| AAATGTTTGTGGACATATTG+TGG | - | chr5.4:42887405-42887424 | MS.gene59655:intron | 30.0% | |
| ACAGGTTCAAAAGATAAATG+AGG | - | chr5.4:42889490-42889509 | MS.gene59655:intron | 30.0% | |
| ACTGAAATCCACTAGTATTT+CGG | - | chr5.4:42891698-42891717 | MS.gene59655:intron | 30.0% | |
| AGAAATCAAGACAAGATTCT+TGG | + | chr5.4:42887644-42887663 | None:intergenic | 30.0% | |
| AGGTATAAGTTTCTTCATTG+AGG | - | chr5.4:42890863-42890882 | MS.gene59655:CDS | 30.0% | |
| AGTAGTGTAATATTAGTGGT+GGG | - | chr5.4:42887675-42887694 | MS.gene59655:CDS | 30.0% | |
| ATATTGTGGAGTTAAGAAGA+GGG | - | chr5.4:42887419-42887438 | MS.gene59655:intron | 30.0% | |
| ATGTGTAGATCCTTATTATC+AGG | - | chr5.4:42890843-42890862 | MS.gene59655:intron | 30.0% | |
| ATTGAATTGAAGACTAAGTC+AGG | - | chr5.4:42891968-42891987 | MS.gene59655:CDS | 30.0% | |
| CAGATAAAAAAAGTTAGCAG+AGG | + | chr5.4:42889192-42889211 | None:intergenic | 30.0% | |
| CATTTCTTCAGTTGAAAACA+GGG | + | chr5.4:42890685-42890704 | None:intergenic | 30.0% | |
| GAATTCTTATTGCTTGGATT+GGG | - | chr5.4:42891327-42891346 | MS.gene59655:intron | 30.0% | |
| GATTGAGATATATGAGAGAA+AGG | - | chr5.4:42887337-42887356 | MS.gene59655:intron | 30.0% | |
| GCCCAAGTATTTAAAAAACT+AGG | + | chr5.4:42890635-42890654 | None:intergenic | 30.0% | |
| GCTCACAAAAAATCTTCATA+AGG | + | chr5.4:42887502-42887521 | None:intergenic | 30.0% | |
| GGATAGAAAACAAACTAGAA+AGG | + | chr5.4:42890916-42890935 | None:intergenic | 30.0% | |
| GGTATAAGTTTCTTCATTGA+GGG | - | chr5.4:42890864-42890883 | MS.gene59655:CDS | 30.0% | |
| GTACTATGAATTGAAGACAT+TGG | + | chr5.4:42887611-42887630 | None:intergenic | 30.0% | |
| TAGTAGTGTAATATTAGTGG+TGG | - | chr5.4:42887674-42887693 | MS.gene59655:CDS | 30.0% | |
| TCAACATTGATACTCTTGAA+TGG | - | chr5.4:42891774-42891793 | MS.gene59655:intron | 30.0% | |
| TGAAGAAGAAGAATTAAACC+TGG | + | chr5.4:42890331-42890350 | None:intergenic | 30.0% | |
| TGAATTCTTATTGCTTGGAT+TGG | - | chr5.4:42891326-42891345 | MS.gene59655:intron | 30.0% | |
| TGATTTGAACTCAAAACTAG+AGG | - | chr5.4:42888785-42888804 | MS.gene59655:intron | 30.0% | |
| TTCAAAAACCGAAATACTAG+TGG | + | chr5.4:42891709-42891728 | None:intergenic | 30.0% | |
| TTGAATGAAGACCTAAAGTA+GGG | - | chr5.4:42887463-42887482 | MS.gene59655:intron | 30.0% | |
| ! | CAAGTTGAATTCTTATTGCT+TGG | - | chr5.4:42891321-42891340 | MS.gene59655:intron | 30.0% |
| ! | CTGTTTTCAACTGAAGAAAT+GGG | - | chr5.4:42890684-42890703 | MS.gene59655:intron | 30.0% |
| ! | CTTATTCACATTGCCTATTT+TGG | - | chr5.4:42889246-42889265 | MS.gene59655:intron | 30.0% |
| ! | GATTGGGATGTTAAGTTTTA+GGG | - | chr5.4:42891343-42891362 | MS.gene59655:intron | 30.0% |
| ! | TAGTCTGAAATTCTTAATGC+AGG | - | chr5.4:42888674-42888693 | MS.gene59655:intron | 30.0% |
| ! | TCATTTATCTTTTGAACCTG+TGG | + | chr5.4:42889491-42889510 | None:intergenic | 30.0% |
| ! | TCTTTTACCTTATTCAAGTG+GGG | + | chr5.4:42890823-42890842 | None:intergenic | 30.0% |
| ! | TTTGTGAATCGTGATTTTTG+TGG | - | chr5.4:42888205-42888224 | MS.gene59655:intron | 30.0% |
| !! | ATTGGGATGTTAAGTTTTAG+GGG | - | chr5.4:42891344-42891363 | MS.gene59655:intron | 30.0% |
| !! | TGGAATTGAGTTGATCTAAT+TGG | + | chr5.4:42887952-42887971 | None:intergenic | 30.0% |
| !! | TTCACAAGTTGATATCTTGA+AGG | - | chr5.4:42891234-42891253 | MS.gene59655:intron | 30.0% |
| !!! | GGATAACTTTTAAGGTTTTC+TGG | + | chr5.4:42889782-42889801 | None:intergenic | 30.0% |
| !!! | GTTTTAATTGTTTCCACATG+AGG | + | chr5.4:42890448-42890467 | None:intergenic | 30.0% |
| !!! | TAACTTTTAAGGTTTTCTGG+TGG | + | chr5.4:42889779-42889798 | None:intergenic | 30.0% |
| AAAACAGTGAGAAAGTGAAC+TGG | - | chr5.4:42888727-42888746 | MS.gene59655:intron | 35.0% | |
| AAACAGTGAGAAAGTGAACT+GGG | - | chr5.4:42888728-42888747 | MS.gene59655:intron | 35.0% | |
| AAGTAACGAGGGAGAAAATT+AGG | + | chr5.4:42887880-42887899 | None:intergenic | 35.0% | |
| AATCATTACACCTGCACATT+TGG | + | chr5.4:42889307-42889326 | None:intergenic | 35.0% | |
| AATTCCAAGATCCAATCTCT+CGG | - | chr5.4:42887965-42887984 | MS.gene59655:intron | 35.0% | |
| ACAACTTTATGGAGAGAATC+AGG | - | chr5.4:42891933-42891952 | MS.gene59655:CDS | 35.0% | |
| AGAAAGAGAGAAGAGTTTAC+CGG | + | chr5.4:42886963-42886982 | None:intergenic | 35.0% | |
| AGAATCTTCGATGGAAACAT+CGG | + | chr5.4:42887909-42887928 | None:intergenic | 35.0% | |
| AGAGTCATTGGAATGAACAT+GGG | - | chr5.4:42890207-42890226 | MS.gene59655:intron | 35.0% | |
| AGCAAGGACAATGTTCAAAA+TGG | + | chr5.4:42891477-42891496 | None:intergenic | 35.0% | |
| AGGCAATGTGAATAAGTTGT+GGG | + | chr5.4:42889242-42889261 | None:intergenic | 35.0% | |
| AGGTGTACAATTCCTAAAGA+GGG | + | chr5.4:42888416-42888435 | None:intergenic | 35.0% | |
| AGTAACGAGGGAGAAAATTA+GGG | + | chr5.4:42887879-42887898 | None:intergenic | 35.0% | |
| ATTAACACTCAGAATGAGCA+AGG | + | chr5.4:42891493-42891512 | None:intergenic | 35.0% | |
| ATTCTAGGCCCTAGAAAAAA+AGG | - | chr5.4:42890399-42890418 | MS.gene59655:intron | 35.0% | |
| CACACTGTTGCTAATAATCA+TGG | + | chr5.4:42889803-42889822 | None:intergenic | 35.0% | |
| CATATTGTGGAGTTAAGAAG+AGG | - | chr5.4:42887418-42887437 | MS.gene59655:intron | 35.0% | |
| CATGATTATTAGCAACAGTG+TGG | - | chr5.4:42889801-42889820 | MS.gene59655:intron | 35.0% | |
| CCATTTCTTCAGTTGAAAAC+AGG | + | chr5.4:42890686-42890705 | None:intergenic | 35.0% | |
| CGGGTAAAACAAACAAATTG+TGG | + | chr5.4:42890561-42890580 | None:intergenic | 35.0% | |
| CTATCAGACAAGGTATATTG+TGG | - | chr5.4:42889992-42890011 | MS.gene59655:intron | 35.0% | |
| GAATGCTACTCAACTTATCT+TGG | + | chr5.4:42888340-42888359 | None:intergenic | 35.0% | |
| GACACGTTAATAAAGCAATG+AGG | + | chr5.4:42889076-42889095 | None:intergenic | 35.0% | |
| GTACTTTAAATTCACACAGC+CGG | - | chr5.4:42887738-42887757 | MS.gene59655:CDS | 35.0% | |
| GTTGAATGAAGACCTAAAGT+AGG | - | chr5.4:42887462-42887481 | MS.gene59655:intron | 35.0% | |
| GTTGCTAATGATTCTCAAGA+TGG | + | chr5.4:42891615-42891634 | None:intergenic | 35.0% | |
| GTTGGAAGTGATATCTCAAA+AGG | - | chr5.4:42890238-42890257 | MS.gene59655:CDS | 35.0% | |
| TAATTGGATCTTAAGAGCAG+AGG | + | chr5.4:42887936-42887955 | None:intergenic | 35.0% | |
| TAGGCAATGTGAATAAGTTG+TGG | + | chr5.4:42889243-42889262 | None:intergenic | 35.0% | |
| TATTGTGGAGTTAAGAAGAG+GGG | - | chr5.4:42887420-42887439 | MS.gene59655:intron | 35.0% | |
| TCGTCTCAGAAACAACTTTA+TGG | - | chr5.4:42891922-42891941 | MS.gene59655:CDS | 35.0% | |
| TGAAGTTTACAAGTCGTCAA+AGG | - | chr5.4:42890786-42890805 | MS.gene59655:intron | 35.0% | |
| TGAATCTCGATTACGAGTTT+CGG | - | chr5.4:42886868-42886887 | MS.gene59655:CDS | 35.0% | |
| TGTACACTATATTCGTAGCA+AGG | - | chr5.4:42890091-42890110 | MS.gene59655:CDS | 35.0% | |
| TTAGGTCTTCATTCAACATG+AGG | + | chr5.4:42887459-42887478 | None:intergenic | 35.0% | |
| TTCCTAAATCGATGTTACTG+TGG | - | chr5.4:42888105-42888124 | MS.gene59655:CDS | 35.0% | |
| TTTCTATCCATAGCTCCATA+TGG | - | chr5.4:42890927-42890946 | MS.gene59655:CDS | 35.0% | |
| ! | AGCCGAAATTGATTCACTTA+AGG | - | chr5.4:42891204-42891223 | MS.gene59655:intron | 35.0% |
| ! | AGCGTTTTTACTTGGTTGTT+AGG | - | chr5.4:42891404-42891423 | MS.gene59655:intron | 35.0% |
| ! | AGTCGATTGAACCAAGTTTT+TGG | - | chr5.4:42888072-42888091 | MS.gene59655:CDS | 35.0% |
| ! | CCTGTTTTCAACTGAAGAAA+TGG | - | chr5.4:42890683-42890702 | MS.gene59655:intron | 35.0% |
| ! | GAAGCATTTGTCAAAGTGTT+TGG | - | chr5.4:42891058-42891077 | MS.gene59655:intron | 35.0% |
| ! | GCAGAATTCTAGAGAAAAAC+AGG | - | chr5.4:42891282-42891301 | MS.gene59655:intron | 35.0% |
| ! | GGATTGGGATGTTAAGTTTT+AGG | - | chr5.4:42891342-42891361 | MS.gene59655:intron | 35.0% |
| ! | TTTTCTTGCCAATGTTGTGT+AGG | - | chr5.4:42889588-42889607 | MS.gene59655:intron | 35.0% |
| !! | CTGATAGCTTGTTAACCATT+CGG | - | chr5.4:42890586-42890605 | MS.gene59655:intron | 35.0% |
| !! | GAAATACTAGTGGATTTCAG+TGG | + | chr5.4:42891699-42891718 | None:intergenic | 35.0% |
| !!! | AGCTTGTGCCTTTTTTTCTA+GGG | + | chr5.4:42890410-42890429 | None:intergenic | 35.0% |
| !!! | CAATTTGTTTGTTTTACCCG+TGG | - | chr5.4:42890561-42890580 | MS.gene59655:CDS | 35.0% |
| !!! | TTAAGTTTTAGGGGTTGGTT+AGG | - | chr5.4:42891353-42891372 | MS.gene59655:intron | 35.0% |
| AAAATGAGAGGAGGACCATA+TGG | + | chr5.4:42890945-42890964 | None:intergenic | 40.0% | |
| AAAGCGAAGACGAAAAGCTT+CGG | + | chr5.4:42887848-42887867 | None:intergenic | 40.0% | |
| AAATCCACCATCTAACCACA+GGG | + | chr5.4:42890531-42890550 | None:intergenic | 40.0% | |
| AACTTAGAATCGCCAAGAGA+TGG | - | chr5.4:42891565-42891584 | MS.gene59655:intron | 40.0% | |
| AAGAAGAGGGGAAGTGAAAA+AGG | - | chr5.4:42887432-42887451 | MS.gene59655:intron | 40.0% | |
| AAGACCTAAAGTAGGGATGT+GGG | - | chr5.4:42887470-42887489 | MS.gene59655:intron | 40.0% | |
| AAGATGGTAACTAGACTCAG+AGG | + | chr5.4:42891599-42891618 | None:intergenic | 40.0% | |
| AATGTTGAAGGCAAAGCTAG+AGG | - | chr5.4:42889669-42889688 | MS.gene59655:intron | 40.0% | |
| ACACGCACTCAAACTAGAAT+AGG | + | chr5.4:42888881-42888900 | None:intergenic | 40.0% | |
| ACCATTCGGAGTTTCAACAT+TGG | - | chr5.4:42890600-42890619 | MS.gene59655:intron | 40.0% | |
| AGAAAGTGAACTGGGAATCT+CGG | - | chr5.4:42888736-42888755 | MS.gene59655:intron | 40.0% | |
| AGAATCATTAGCAACGTCAC+TGG | - | chr5.4:42891620-42891639 | MS.gene59655:intron | 40.0% | |
| AGAGGAATCAGAATCTTCGA+TGG | + | chr5.4:42887918-42887937 | None:intergenic | 40.0% | |
| ATATAGTGTACAGCAAGCCA+AGG | + | chr5.4:42890083-42890102 | None:intergenic | 40.0% | |
| ATCAAGATCTGATTCCGTTG+TGG | + | chr5.4:42886841-42886860 | None:intergenic | 40.0% | |
| CAACAGCAATGACCCAAAAT+AGG | + | chr5.4:42889262-42889281 | None:intergenic | 40.0% | |
| CAGGTGTACAATTCCTAAAG+AGG | + | chr5.4:42888417-42888436 | None:intergenic | 40.0% | |
| CATTCAATCCTTGCAGAATG+AGG | - | chr5.4:42888355-42888374 | MS.gene59655:intron | 40.0% | |
| CGAATGGTTAACAAGCTATC+AGG | + | chr5.4:42890588-42890607 | None:intergenic | 40.0% | |
| CTTGGCGATTCTAAGTTTGT+TGG | + | chr5.4:42891562-42891581 | None:intergenic | 40.0% | |
| CTTTATGGAGAGAATCAGGA+AGG | - | chr5.4:42891937-42891956 | MS.gene59655:CDS | 40.0% | |
| GAGAGTCATTGGAATGAACA+TGG | - | chr5.4:42890206-42890225 | MS.gene59655:intron | 40.0% | |
| GAGATATATGAGAGAAAGGG+AGG | - | chr5.4:42887341-42887360 | MS.gene59655:intron | 40.0% | |
| GAGGATGTAAGTTGTACACT+TGG | - | chr5.4:42888804-42888823 | MS.gene59655:intron | 40.0% | |
| GGTGTTAATGATCAGACTCA+TGG | - | chr5.4:42890044-42890063 | MS.gene59655:CDS | 40.0% | |
| GTATAGCTCATCACAACTCA+AGG | - | chr5.4:42891990-42892009 | MS.gene59655:CDS | 40.0% | |
| GTGTTTGGAAAAGAACATCC+TGG | - | chr5.4:42891073-42891092 | MS.gene59655:intron | 40.0% | |
| TAGTGTGAACGCATGACTTT+GGG | - | chr5.4:42887529-42887548 | MS.gene59655:intron | 40.0% | |
| TCCTCAGAAAAAAGGGTCAT+TGG | - | chr5.4:42888539-42888558 | MS.gene59655:intron | 40.0% | |
| TCTAAGTTCCACCAATCTAC+CGG | + | chr5.4:42887760-42887779 | None:intergenic | 40.0% | |
| TGAGATATCACTTCCAACAG+AGG | + | chr5.4:42890236-42890255 | None:intergenic | 40.0% | |
| TTAACAAGCTATCAGGACCA+CGG | + | chr5.4:42890581-42890600 | None:intergenic | 40.0% | |
| TTATCACTAGCCAAATGTGC+AGG | - | chr5.4:42889294-42889313 | MS.gene59655:CDS | 40.0% | |
| TTGAGTAGTGTATTCTCCAC+AGG | - | chr5.4:42889472-42889491 | MS.gene59655:intron | 40.0% | |
| TTGGATTGATACCGAGAGAT+TGG | + | chr5.4:42887979-42887998 | None:intergenic | 40.0% | |
| ! | AAAAGGCACAAGCTGGAAAA+TGG | - | chr5.4:42890416-42890435 | MS.gene59655:intron | 40.0% |
| ! | AAAGGCACAAGCTGGAAAAT+GGG | - | chr5.4:42890417-42890436 | MS.gene59655:intron | 40.0% |
| ! | AAGTTGTGGGAGTGTAGTAA+AGG | + | chr5.4:42889229-42889248 | None:intergenic | 40.0% |
| ! | ACGCTTTTCCTATGCATTCT+AGG | - | chr5.4:42890384-42890403 | MS.gene59655:intron | 40.0% |
| ! | CTAGAAAAAAAGGCACAAGC+TGG | - | chr5.4:42890409-42890428 | MS.gene59655:intron | 40.0% |
| ! | CTTTTCAGTAGACCCTCTTT+AGG | - | chr5.4:42888401-42888420 | MS.gene59655:CDS | 40.0% |
| ! | TATGAGAGAAAGGGAGGTAT+TGG | - | chr5.4:42887347-42887366 | MS.gene59655:intron | 40.0% |
| ! | TTAACAAGGCCCGTTTTACT+TGG | - | chr5.4:42891434-42891453 | MS.gene59655:intron | 40.0% |
| ! | TTTCTTTTCCCCTCTTGTCT+TGG | - | chr5.4:42889100-42889119 | MS.gene59655:intron | 40.0% |
| !! | CACCACAGTAACATCGATTT+AGG | + | chr5.4:42888110-42888129 | None:intergenic | 40.0% |
| !! | GTTGTTGTTGTCGACTTCTT+TGG | - | chr5.4:42891375-42891394 | MS.gene59655:intron | 40.0% |
| !! | TAAGAGCACGTTCAGTTTTG+CGG | + | chr5.4:42889532-42889551 | None:intergenic | 40.0% |
| !! | TGTTTCTGAGACGATCTTCA+AGG | + | chr5.4:42891916-42891935 | None:intergenic | 40.0% |
| !! | TTTGCTGTCTTGCTCTCTTT+TGG | - | chr5.4:42887577-42887596 | MS.gene59655:CDS | 40.0% |
| !!! | CAGCTTGTGCCTTTTTTTCT+AGG | + | chr5.4:42890411-42890430 | None:intergenic | 40.0% |
| !!! | GGATGTTAAGTTTTAGGGGT+TGG | - | chr5.4:42891348-42891367 | MS.gene59655:intron | 40.0% |
| !!! | TCCAATGACCCTTTTTTCTG+AGG | + | chr5.4:42888543-42888562 | None:intergenic | 40.0% |
| AAAACAGTTGCCAACCTCTC+TGG | - | chr5.4:42891869-42891888 | MS.gene59655:intron | 45.0% | |
| AATTCACACAGCCGGTAGAT+TGG | - | chr5.4:42887746-42887765 | MS.gene59655:CDS | 45.0% | |
| ACCACCATCCTACACAACAT+TGG | + | chr5.4:42889599-42889618 | None:intergenic | 45.0% | |
| ACGTGCATTCTATGGGACTT+GGG | - | chr5.4:42891098-42891117 | MS.gene59655:intron | 45.0% | |
| ACTCACAGTCTCACATACCT+CGG | + | chr5.4:42889561-42889580 | None:intergenic | 45.0% | |
| ACTTGCTCCCCACTTGAATA+AGG | - | chr5.4:42890813-42890832 | MS.gene59655:intron | 45.0% | |
| AGAAACCACCAAGACAAGAG+GGG | + | chr5.4:42889111-42889130 | None:intergenic | 45.0% | |
| AGAAGCAACCTCATTCTGCA+AGG | + | chr5.4:42888366-42888385 | None:intergenic | 45.0% | |
| AGAGAGAAGAGTTTACCGGT+AGG | + | chr5.4:42886959-42886978 | None:intergenic | 45.0% | |
| AGTGTGAACGCATGACTTTG+GGG | - | chr5.4:42887530-42887549 | MS.gene59655:intron | 45.0% | |
| AGTTTACCGGTAGGAGAGTT+TGG | + | chr5.4:42886950-42886969 | None:intergenic | 45.0% | |
| ATGATCAGACTCATGGTGCT+TGG | - | chr5.4:42890051-42890070 | MS.gene59655:CDS | 45.0% | |
| ATTCCAATGACTCTCAGCGA+CGG | + | chr5.4:42890201-42890220 | None:intergenic | 45.0% | |
| CAAAGCAATAGAGCTGAGCA+AGG | - | chr5.4:42889699-42889718 | MS.gene59655:intron | 45.0% | |
| CAAATCCACCATCTAACCAC+AGG | + | chr5.4:42890532-42890551 | None:intergenic | 45.0% | |
| CAGAAACCACCAAGACAAGA+GGG | + | chr5.4:42889112-42889131 | None:intergenic | 45.0% | |
| CCTGGATACGTGCATTCTAT+GGG | - | chr5.4:42891091-42891110 | MS.gene59655:intron | 45.0% | |
| CTAGTGTGAACGCATGACTT+TGG | - | chr5.4:42887528-42887547 | MS.gene59655:intron | 45.0% | |
| CTTGCCAATGTTGTGTAGGA+TGG | - | chr5.4:42889592-42889611 | MS.gene59655:intron | 45.0% | |
| CTTGCTCAGCTCTATTGCTT+TGG | + | chr5.4:42889701-42889720 | None:intergenic | 45.0% | |
| GAAAGTGAACTGGGAATCTC+GGG | - | chr5.4:42888737-42888756 | MS.gene59655:CDS | 45.0% | |
| GAAGACCTAAAGTAGGGATG+TGG | - | chr5.4:42887469-42887488 | MS.gene59655:intron | 45.0% | |
| GAATGAGGTTGCTTCTCTTC+AGG | - | chr5.4:42888370-42888389 | MS.gene59655:intron | 45.0% | |
| GACCTGCTTCTGTAGTTCAT+CGG | + | chr5.4:42888601-42888620 | None:intergenic | 45.0% | |
| GAGGGAGAAAATTAGGGCAA+CGG | + | chr5.4:42887873-42887892 | None:intergenic | 45.0% | |
| GATACCGAGAGATTGGATCT+TGG | + | chr5.4:42887972-42887991 | None:intergenic | 45.0% | |
| GCCAATGTTGAAACTCCGAA+TGG | + | chr5.4:42890604-42890623 | None:intergenic | 45.0% | |
| GTATCCAAGTCTTGCCGATA+CGG | - | chr5.4:42886890-42886909 | MS.gene59655:CDS | 45.0% | |
| GTGGTCTGTGGTGAAAACAA+AGG | - | chr5.4:42890726-42890745 | MS.gene59655:intron | 45.0% | |
| TAACAAGCTATCAGGACCAC+GGG | + | chr5.4:42890580-42890599 | None:intergenic | 45.0% | |
| TAATGATTCGTGGCCGCTAT+GGG | - | chr5.4:42889319-42889338 | MS.gene59655:CDS | 45.0% | |
| TACGTGCATTCTATGGGACT+TGG | - | chr5.4:42891097-42891116 | MS.gene59655:intron | 45.0% | |
| TACTTCTCACCGTGCTAGAA+CGG | - | chr5.4:42891141-42891160 | MS.gene59655:intron | 45.0% | |
| TCCTGGATACGTGCATTCTA+TGG | - | chr5.4:42891090-42891109 | MS.gene59655:intron | 45.0% | |
| TCGCTCAACGCTTACTTAAC+CGG | - | chr5.4:42887084-42887103 | MS.gene59655:intron | 45.0% | |
| TGGAGAGAATCAGGAAGGAA+TGG | - | chr5.4:42891942-42891961 | MS.gene59655:CDS | 45.0% | |
| TGGTTTCTGCTGAAAGTTGC+TGG | - | chr5.4:42889123-42889142 | MS.gene59655:intron | 45.0% | |
| TGTGAAAGAACAGTGGTCTG+TGG | - | chr5.4:42890714-42890733 | MS.gene59655:intron | 45.0% | |
| TGTGCAGGTGTAATGATTCG+TGG | - | chr5.4:42889309-42889328 | MS.gene59655:CDS | 45.0% | |
| TTAACTGGTTAGGCCCATAG+CGG | + | chr5.4:42889335-42889354 | None:intergenic | 45.0% | |
| TTCCAGCTGTGAAAGAACAG+TGG | - | chr5.4:42890707-42890726 | MS.gene59655:intron | 45.0% | |
| TTCGGAGTTTCAACATTGGC+AGG | - | chr5.4:42890604-42890623 | MS.gene59655:intron | 45.0% | |
| ! | CAAGACAAGATTCTTGGTGC+TGG | + | chr5.4:42887638-42887657 | None:intergenic | 45.0% |
| ! | CATCCTCTCATTAGCCTCAA+AGG | + | chr5.4:42891173-42891192 | None:intergenic | 45.0% |
| ! | TTGTGGGAGTGTAGTAAAGG+TGG | + | chr5.4:42889226-42889245 | None:intergenic | 45.0% |
| !! | AAAATGGGCTGAACCTCATG+TGG | - | chr5.4:42890432-42890451 | MS.gene59655:intron | 45.0% |
| !! | TTCGATGGAAACATCGGCTT+CGG | + | chr5.4:42887903-42887922 | None:intergenic | 45.0% |
| !! | TTCTAGGGCCTAGAATGCAT+AGG | + | chr5.4:42890395-42890414 | None:intergenic | 45.0% |
| !!! | GTCTTGCTCTCTTTTGGAGT+TGG | - | chr5.4:42887583-42887602 | MS.gene59655:CDS | 45.0% |
| !!! | ATTTTTACTTATATATAATT+TGG | + | chr5.4:42887247-42887266 | None:intergenic | 5.0% |
| AAAAGGGTCATTGGATGCCG+AGG | - | chr5.4:42888548-42888567 | MS.gene59655:intron | 50.0% | |
| ACGTGCTCTTAAAGTTGCCG+AGG | - | chr5.4:42889541-42889560 | MS.gene59655:intron | 50.0% | |
| ACTGCAATTACTGTGCCCTG+TGG | - | chr5.4:42890513-42890532 | MS.gene59655:CDS | 50.0% | |
| AGGAGGACCATATGGAGCTA+TGG | + | chr5.4:42890937-42890956 | None:intergenic | 50.0% | |
| CCCATAGAATGCACGTATCC+AGG | + | chr5.4:42891094-42891113 | None:intergenic | 50.0% | |
| CCTACCATGCAGTTTGTGTG+AGG | - | chr5.4:42887060-42887079 | MS.gene59655:intron | 50.0% | |
| CCTCACACAAACTGCATGGT+AGG | + | chr5.4:42887063-42887082 | None:intergenic | 50.0% | |
| CGATCCTCACACAAACTGCA+TGG | + | chr5.4:42887067-42887086 | None:intergenic | 50.0% | |
| CGCTTTCCAAACTCTCCTAC+CGG | - | chr5.4:42886941-42886960 | MS.gene59655:CDS | 50.0% | |
| CGGTAGGAGAGTTTGGAAAG+CGG | + | chr5.4:42886943-42886962 | None:intergenic | 50.0% | |
| CTCAATGCTCGTACCTGGAA+GGG | - | chr5.4:42889044-42889063 | MS.gene59655:intron | 50.0% | |
| CTCTGGCCGCTATGATCTAA+AGG | - | chr5.4:42891886-42891905 | MS.gene59655:intron | 50.0% | |
| GAAGTCAGTGCTTGCACATG+AGG | + | chr5.4:42890757-42890776 | None:intergenic | 50.0% | |
| GACCACTGTTCTTTCACAGC+TGG | + | chr5.4:42890712-42890731 | None:intergenic | 50.0% | |
| GCAACCCACATCCCTACTTT+AGG | + | chr5.4:42887477-42887496 | None:intergenic | 50.0% | |
| GCAGAAACCACCAAGACAAG+AGG | + | chr5.4:42889113-42889132 | None:intergenic | 50.0% | |
| GCCAATGTTGTGTAGGATGG+TGG | - | chr5.4:42889595-42889614 | MS.gene59655:intron | 50.0% | |
| GGCCAGCCTTTAGATCATAG+CGG | + | chr5.4:42891895-42891914 | None:intergenic | 50.0% | |
| GGTCATGAATGCCTCCGTAT+CGG | + | chr5.4:42886907-42886926 | None:intergenic | 50.0% | |
| GTAATGATTCGTGGCCGCTA+TGG | - | chr5.4:42889318-42889337 | MS.gene59655:CDS | 50.0% | |
| TACTGTGCCCTGTGGTTAGA+TGG | - | chr5.4:42890521-42890540 | MS.gene59655:CDS | 50.0% | |
| TAGGAGAGTTTGGAAAGCGG+CGG | + | chr5.4:42886940-42886959 | None:intergenic | 50.0% | |
| TAGTGTACAGCAAGCCAAGG+AGG | + | chr5.4:42890080-42890099 | None:intergenic | 50.0% | |
| TGAACATGGGAAGCCTCTGT+TGG | - | chr5.4:42890220-42890239 | MS.gene59655:intron | 50.0% | |
| TGCCGATGAACTACAGAAGC+AGG | - | chr5.4:42888596-42888615 | MS.gene59655:CDS | 50.0% | |
| TTAGATCATAGCGGCCAGAG+AGG | + | chr5.4:42891886-42891905 | None:intergenic | 50.0% | |
| ! | ATCGGCTTCGGAAGTAACGA+GGG | + | chr5.4:42887891-42887910 | None:intergenic | 50.0% |
| ! | CTTTTCCCCTCTTGTCTTGG+TGG | - | chr5.4:42889103-42889122 | MS.gene59655:intron | 50.0% |
| ! | GGAGCTCGAGCGTTTTTACT+TGG | - | chr5.4:42891396-42891415 | MS.gene59655:intron | 50.0% |
| !! | AACGCATGACTTTGGGGTGT+GGG | - | chr5.4:42887536-42887555 | MS.gene59655:intron | 50.0% |
| !! | CGTCCTTTGAGGCTAATGAG+AGG | - | chr5.4:42891167-42891186 | MS.gene59655:intron | 50.0% |
| !! | GATACGGAGGCATTCATGAC+CGG | - | chr5.4:42886906-42886925 | MS.gene59655:CDS | 50.0% |
| !! | TACGAGCATTGAGCATGGCA+AGG | + | chr5.4:42889037-42889056 | None:intergenic | 50.0% |
| !! | TTTTGCCACGTCTGATGACG+TGG | - | chr5.4:42887034-42887053 | MS.gene59655:intron | 50.0% |
| AATGAGGACGATGCCCTTCC+AGG | + | chr5.4:42889060-42889079 | None:intergenic | 55.0% | |
| AGCCTTTCCAACCTGCTCCT+CGG | + | chr5.4:42888568-42888587 | None:intergenic | 55.0% | |
| AGTCCGTCGCTGAGAGTCAT+TGG | - | chr5.4:42890195-42890214 | MS.gene59655:intron | 55.0% | |
| ATCATAGCGGCCAGAGAGGT+TGG | + | chr5.4:42891882-42891901 | None:intergenic | 55.0% | |
| ATGGTGCTTGGCTTCCTCCT+TGG | - | chr5.4:42890063-42890082 | MS.gene59655:CDS | 55.0% | |
| CCATGCTCAATGCTCGTACC+TGG | - | chr5.4:42889039-42889058 | MS.gene59655:intron | 55.0% | |
| GCGAAGACGAAAAGCTTCGG+AGG | + | chr5.4:42887845-42887864 | None:intergenic | 55.0% | |
| GCTCAATGCTCGTACCTGGA+AGG | - | chr5.4:42889043-42889062 | MS.gene59655:intron | 55.0% | |
| GGATTCCACGTCATCAGACG+TGG | + | chr5.4:42887042-42887061 | None:intergenic | 55.0% | |
| GGCCGCTATGATCTAAAGGC+TGG | - | chr5.4:42891890-42891909 | MS.gene59655:CDS | 55.0% | |
| TAGAACGGCGTCGTCCTTTG+AGG | - | chr5.4:42891156-42891175 | MS.gene59655:intron | 55.0% | |
| TCACACAGCCGGTAGATTGG+TGG | - | chr5.4:42887749-42887768 | MS.gene59655:CDS | 55.0% | |
| TCCAAGTCTTGCCGATACGG+AGG | - | chr5.4:42886893-42886912 | MS.gene59655:CDS | 55.0% | |
| TGTGCCCTGTGGTTAGATGG+TGG | - | chr5.4:42890524-42890543 | MS.gene59655:CDS | 55.0% | |
| ! | GAGGAGCACACACCATCTCT+TGG | + | chr5.4:42891580-42891599 | None:intergenic | 55.0% |
| !! | CATCGGCTTCGGAAGTAACG+AGG | + | chr5.4:42887892-42887911 | None:intergenic | 55.0% |
| !! | CCAGGTACGAGCATTGAGCA+TGG | + | chr5.4:42889042-42889061 | None:intergenic | 55.0% |
| !! | GAACGCATGACTTTGGGGTG+TGG | - | chr5.4:42887535-42887554 | MS.gene59655:intron | 55.0% |
| AGGACGACGCCGTTCTAGCA+CGG | + | chr5.4:42891153-42891172 | None:intergenic | 60.0% | |
| GAAAGCGGCGGAGCAAACTC+CGG | + | chr5.4:42886928-42886947 | None:intergenic | 60.0% | |
| GTCATTGGATGCCGAGGAGC+AGG | - | chr5.4:42888554-42888573 | MS.gene59655:intron | 60.0% | |
| TTGGATGCCGAGGAGCAGGT+TGG | - | chr5.4:42888558-42888577 | MS.gene59655:intron | 60.0% | |
| ! | GCCTCCGTATCGGCAAGACT+TGG | + | chr5.4:42886897-42886916 | None:intergenic | 60.0% |
| ! | TGCCGAGGAGCAGGTTGGAA+AGG | - | chr5.4:42888563-42888582 | MS.gene59655:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 42886834 | 42892015 | 42886834 | ID=MS.gene59655 |
| chr5.4 | mRNA | 42886834 | 42892015 | 42886834 | ID=MS.gene59655.t1;Parent=MS.gene59655 |
| chr5.4 | exon | 42891887 | 42892015 | 42891887 | ID=MS.gene59655.t1.exon1;Parent=MS.gene59655.t1 |
| chr5.4 | CDS | 42891887 | 42892015 | 42891887 | ID=cds.MS.gene59655.t1;Parent=MS.gene59655.t1 |
| chr5.4 | exon | 42890863 | 42890998 | 42890863 | ID=MS.gene59655.t1.exon2;Parent=MS.gene59655.t1 |
| chr5.4 | CDS | 42890863 | 42890998 | 42890863 | ID=cds.MS.gene59655.t1;Parent=MS.gene59655.t1 |
| chr5.4 | exon | 42890458 | 42890585 | 42890458 | ID=MS.gene59655.t1.exon3;Parent=MS.gene59655.t1 |
| chr5.4 | CDS | 42890458 | 42890585 | 42890458 | ID=cds.MS.gene59655.t1;Parent=MS.gene59655.t1 |
| chr5.4 | exon | 42890232 | 42890303 | 42890232 | ID=MS.gene59655.t1.exon4;Parent=MS.gene59655.t1 |
| chr5.4 | CDS | 42890232 | 42890303 | 42890232 | ID=cds.MS.gene59655.t1;Parent=MS.gene59655.t1 |
| chr5.4 | exon | 42890040 | 42890153 | 42890040 | ID=MS.gene59655.t1.exon5;Parent=MS.gene59655.t1 |
| chr5.4 | CDS | 42890040 | 42890153 | 42890040 | ID=cds.MS.gene59655.t1;Parent=MS.gene59655.t1 |
| chr5.4 | exon | 42889287 | 42889355 | 42889287 | ID=MS.gene59655.t1.exon6;Parent=MS.gene59655.t1 |
| chr5.4 | CDS | 42889287 | 42889355 | 42889287 | ID=cds.MS.gene59655.t1;Parent=MS.gene59655.t1 |
| chr5.4 | exon | 42889129 | 42889185 | 42889129 | ID=MS.gene59655.t1.exon7;Parent=MS.gene59655.t1 |
| chr5.4 | CDS | 42889129 | 42889185 | 42889129 | ID=cds.MS.gene59655.t1;Parent=MS.gene59655.t1 |
| chr5.4 | exon | 42888737 | 42888790 | 42888737 | ID=MS.gene59655.t1.exon8;Parent=MS.gene59655.t1 |
| chr5.4 | CDS | 42888737 | 42888790 | 42888737 | ID=cds.MS.gene59655.t1;Parent=MS.gene59655.t1 |
| chr5.4 | exon | 42888590 | 42888652 | 42888590 | ID=MS.gene59655.t1.exon9;Parent=MS.gene59655.t1 |
| chr5.4 | CDS | 42888590 | 42888652 | 42888590 | ID=cds.MS.gene59655.t1;Parent=MS.gene59655.t1 |
| chr5.4 | exon | 42888381 | 42888443 | 42888381 | ID=MS.gene59655.t1.exon10;Parent=MS.gene59655.t1 |
| chr5.4 | CDS | 42888381 | 42888443 | 42888381 | ID=cds.MS.gene59655.t1;Parent=MS.gene59655.t1 |
| chr5.4 | exon | 42887985 | 42888149 | 42887985 | ID=MS.gene59655.t1.exon11;Parent=MS.gene59655.t1 |
| chr5.4 | CDS | 42887985 | 42888149 | 42887985 | ID=cds.MS.gene59655.t1;Parent=MS.gene59655.t1 |
| chr5.4 | exon | 42887546 | 42887839 | 42887546 | ID=MS.gene59655.t1.exon12;Parent=MS.gene59655.t1 |
| chr5.4 | CDS | 42887546 | 42887839 | 42887546 | ID=cds.MS.gene59655.t1;Parent=MS.gene59655.t1 |
| chr5.4 | exon | 42886834 | 42886992 | 42886834 | ID=MS.gene59655.t1.exon13;Parent=MS.gene59655.t1 |
| chr5.4 | CDS | 42886834 | 42886992 | 42886834 | ID=cds.MS.gene59655.t1;Parent=MS.gene59655.t1 |
| Gene Sequence |
| Protein sequence |
