Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59848.t1 | XP_003628200.1 | 84.7 | 157 | 23 | 1 | 1 | 157 | 1 | 156 | 4.20E-74 | 287.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59848.t1 | Q9SSK5 | 34.7 | 150 | 95 | 3 | 3 | 150 | 7 | 155 | 4.6e-21 | 102.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59848.t1 | G7L7T5 | 84.7 | 157 | 23 | 1 | 1 | 157 | 1 | 156 | 3.0e-74 | 287.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049821 | MS.gene59848 | 0.807797 | 4.24E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene59848 | 0.802761 | 4.81E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene59848 | 0.812341 | 4.45E-51 | -1.69E-46 |
| MS.gene050137 | MS.gene59848 | 0.804008 | 2.66E-49 | -1.69E-46 |
| MS.gene050780 | MS.gene59848 | 0.804739 | 1.87E-49 | -1.69E-46 |
| MS.gene051199 | MS.gene59848 | 0.801304 | 9.59E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene59848 | 0.833099 | 6.48E-56 | -1.69E-46 |
| MS.gene05157 | MS.gene59848 | 0.805517 | 1.28E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene59848 | 0.822435 | 2.37E-53 | -1.69E-46 |
| MS.gene051720 | MS.gene59848 | 0.821373 | 4.18E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene59848 | 0.824796 | 6.65E-54 | -1.69E-46 |
| MS.gene052020 | MS.gene59848 | 0.803727 | 3.04E-49 | -1.69E-46 |
| MS.gene052142 | MS.gene59848 | 0.807499 | 4.91E-50 | -1.69E-46 |
| MS.gene052698 | MS.gene59848 | 0.815112 | 1.09E-51 | -1.69E-46 |
| MS.gene053383 | MS.gene59848 | 0.815288 | 9.98E-52 | -1.69E-46 |
| MS.gene05456 | MS.gene59848 | 0.808132 | 3.60E-50 | -1.69E-46 |
| MS.gene055359 | MS.gene59848 | 0.841005 | 6.18E-58 | -1.69E-46 |
| MS.gene055465 | MS.gene59848 | 0.806071 | 9.83E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene59848 | 0.811256 | 7.67E-51 | -1.69E-46 |
| MS.gene058384 | MS.gene59848 | 0.843307 | 1.52E-58 | -1.69E-46 |
| MS.gene059006 | MS.gene59848 | 0.805832 | 1.10E-49 | -1.69E-46 |
| MS.gene059632 | MS.gene59848 | 0.806097 | 9.70E-50 | -1.69E-46 |
| MS.gene060519 | MS.gene59848 | 0.805749 | 1.15E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59848.t1 | MTR_8g045490 | 84.713 | 157 | 23 | 1 | 1 | 157 | 1 | 156 | 2.48e-97 | 277 |
| MS.gene59848.t1 | MTR_8g045400 | 80.892 | 157 | 29 | 1 | 1 | 157 | 1 | 156 | 1.25e-91 | 263 |
| MS.gene59848.t1 | MTR_8g045520 | 77.070 | 157 | 36 | 0 | 1 | 157 | 1 | 157 | 1.03e-89 | 258 |
| MS.gene59848.t1 | MTR_8g045570 | 73.684 | 152 | 40 | 0 | 1 | 152 | 1 | 152 | 7.54e-84 | 243 |
| MS.gene59848.t1 | MTR_8g045695 | 70.701 | 157 | 45 | 1 | 1 | 157 | 1 | 156 | 8.33e-82 | 238 |
| MS.gene59848.t1 | MTR_8g045300 | 69.872 | 156 | 47 | 0 | 1 | 156 | 1 | 156 | 4.46e-80 | 234 |
| MS.gene59848.t1 | MTR_8g045555 | 71.711 | 152 | 43 | 0 | 1 | 152 | 1 | 152 | 2.71e-79 | 231 |
| MS.gene59848.t1 | MTR_8g045735 | 69.032 | 155 | 47 | 1 | 1 | 155 | 1 | 154 | 8.05e-79 | 231 |
| MS.gene59848.t1 | MTR_8g045665 | 68.153 | 157 | 49 | 1 | 1 | 157 | 1 | 156 | 4.16e-77 | 226 |
| MS.gene59848.t1 | MTR_8g045640 | 68.790 | 157 | 48 | 1 | 1 | 157 | 1 | 156 | 1.00e-76 | 225 |
| MS.gene59848.t1 | MTR_8g045560 | 66.879 | 157 | 51 | 1 | 1 | 157 | 1 | 156 | 1.23e-74 | 220 |
| MS.gene59848.t1 | MTR_1g030810 | 43.791 | 153 | 83 | 2 | 1 | 151 | 1 | 152 | 1.67e-38 | 128 |
| MS.gene59848.t1 | MTR_1g030820 | 39.869 | 153 | 89 | 2 | 1 | 151 | 1 | 152 | 1.14e-37 | 126 |
| MS.gene59848.t1 | MTR_1g030840 | 38.462 | 156 | 88 | 4 | 1 | 149 | 1 | 155 | 1.04e-27 | 101 |
| MS.gene59848.t1 | MTR_1g031640 | 37.838 | 148 | 83 | 5 | 7 | 152 | 7 | 147 | 1.91e-26 | 97.8 |
| MS.gene59848.t1 | MTR_8g012550 | 33.103 | 145 | 94 | 3 | 6 | 149 | 8 | 150 | 9.10e-25 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59848.t1 | AT1G70890 | 34.667 | 150 | 95 | 3 | 3 | 150 | 7 | 155 | 6.38e-25 | 94.4 |
| MS.gene59848.t1 | AT5G28010 | 33.333 | 150 | 97 | 3 | 3 | 150 | 15 | 163 | 2.94e-24 | 92.8 |
| MS.gene59848.t1 | AT5G28010 | 33.333 | 150 | 97 | 3 | 3 | 150 | 15 | 163 | 2.94e-24 | 92.8 |
| MS.gene59848.t1 | AT1G70840 | 32.000 | 150 | 99 | 3 | 3 | 150 | 20 | 168 | 3.74e-22 | 87.4 |
| MS.gene59848.t1 | AT1G70830 | 32.667 | 150 | 98 | 3 | 3 | 150 | 22 | 170 | 5.13e-22 | 87.0 |
| MS.gene59848.t1 | AT1G70830 | 32.667 | 150 | 98 | 3 | 3 | 150 | 22 | 170 | 1.00e-21 | 87.0 |
| MS.gene59848.t1 | AT1G70830 | 32.667 | 150 | 98 | 3 | 3 | 150 | 22 | 170 | 3.14e-21 | 86.7 |
| MS.gene59848.t1 | AT1G23120 | 29.861 | 144 | 96 | 3 | 7 | 150 | 7 | 145 | 6.43e-21 | 83.6 |
| MS.gene59848.t1 | AT1G70830 | 32.667 | 150 | 98 | 3 | 3 | 150 | 22 | 170 | 8.16e-21 | 87.0 |
| MS.gene59848.t1 | AT1G70830 | 31.333 | 150 | 100 | 3 | 3 | 150 | 184 | 332 | 2.74e-19 | 82.8 |
| MS.gene59848.t1 | AT1G23120 | 29.861 | 144 | 96 | 3 | 7 | 150 | 57 | 195 | 1.55e-20 | 84.0 |
| MS.gene59848.t1 | AT5G28000 | 31.333 | 150 | 100 | 3 | 3 | 150 | 13 | 161 | 3.42e-20 | 82.0 |
| MS.gene59848.t1 | AT1G70850 | 31.333 | 150 | 100 | 3 | 3 | 150 | 9 | 157 | 3.46e-20 | 84.0 |
| MS.gene59848.t1 | AT1G23130 | 29.530 | 149 | 103 | 2 | 3 | 150 | 10 | 157 | 9.69e-20 | 80.9 |
| MS.gene59848.t1 | AT1G70870 | 42.708 | 96 | 54 | 1 | 56 | 151 | 44 | 138 | 1.01e-19 | 80.1 |
| MS.gene59848.t1 | AT1G70850 | 31.333 | 150 | 100 | 3 | 3 | 150 | 9 | 157 | 1.01e-19 | 84.0 |
| MS.gene59848.t1 | AT1G70850 | 31.429 | 140 | 93 | 3 | 13 | 150 | 175 | 313 | 3.49e-18 | 79.7 |
| MS.gene59848.t1 | AT1G70850 | 31.333 | 150 | 100 | 3 | 3 | 150 | 9 | 157 | 1.01e-19 | 84.0 |
| MS.gene59848.t1 | AT1G70850 | 31.429 | 140 | 93 | 3 | 13 | 150 | 175 | 313 | 3.49e-18 | 79.7 |
| MS.gene59848.t1 | AT1G70880 | 31.333 | 150 | 100 | 3 | 3 | 150 | 8 | 156 | 1.15e-19 | 80.5 |
| MS.gene59848.t1 | AT1G70830 | 31.333 | 150 | 100 | 3 | 3 | 150 | 137 | 285 | 1.17e-19 | 83.2 |
| MS.gene59848.t1 | AT4G23670 | 32.680 | 153 | 100 | 3 | 1 | 152 | 1 | 151 | 1.10e-18 | 77.8 |
| MS.gene59848.t1 | AT1G14930 | 31.210 | 157 | 105 | 3 | 1 | 156 | 1 | 155 | 1.42e-18 | 77.8 |
| MS.gene59848.t1 | AT2G01520 | 30.065 | 153 | 104 | 3 | 1 | 152 | 1 | 151 | 5.96e-18 | 75.9 |
| MS.gene59848.t1 | AT1G35260 | 26.490 | 151 | 107 | 3 | 2 | 150 | 1 | 149 | 1.33e-16 | 72.4 |
| MS.gene59848.t1 | AT4G14060 | 30.065 | 153 | 104 | 3 | 1 | 152 | 1 | 151 | 1.93e-16 | 72.0 |
| MS.gene59848.t1 | AT4G23680 | 30.921 | 152 | 102 | 3 | 1 | 151 | 1 | 150 | 5.41e-16 | 70.9 |
| MS.gene59848.t1 | AT2G01530 | 29.412 | 153 | 105 | 3 | 1 | 152 | 1 | 151 | 7.28e-16 | 70.5 |
| MS.gene59848.t1 | AT1G14940 | 29.299 | 157 | 108 | 3 | 1 | 156 | 1 | 155 | 2.81e-15 | 69.3 |
| MS.gene59848.t1 | AT1G24020 | 30.921 | 152 | 103 | 2 | 1 | 151 | 1 | 151 | 1.26e-14 | 67.4 |
| MS.gene59848.t1 | AT1G24020 | 30.921 | 152 | 103 | 2 | 1 | 151 | 1 | 151 | 1.26e-14 | 67.4 |
| MS.gene59848.t1 | AT1G30990 | 29.801 | 151 | 102 | 4 | 1 | 150 | 1 | 148 | 5.98e-14 | 65.5 |
| MS.gene59848.t1 | AT1G14950 | 28.025 | 157 | 110 | 3 | 1 | 156 | 1 | 155 | 2.09e-13 | 64.3 |
| MS.gene59848.t1 | AT3G26460 | 28.846 | 156 | 103 | 5 | 1 | 152 | 1 | 152 | 6.42e-13 | 62.8 |
| MS.gene59848.t1 | AT1G35310 | 25.180 | 139 | 101 | 3 | 13 | 150 | 12 | 148 | 1.01e-12 | 62.4 |
| MS.gene59848.t1 | AT1G14960 | 26.974 | 152 | 108 | 3 | 1 | 151 | 1 | 150 | 4.38e-11 | 58.2 |
Find 27 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCATTATAGGGTCTTTA+AGG | 0.251134 | 8.3:+53885878 | MS.gene59848:CDS |
| GAGATATTGATGAGCATTAT+AGG | 0.261538 | 8.3:+53885868 | MS.gene59848:CDS |
| AATGGCTACATGGAACATTT+TGG | 0.264766 | 8.3:+53885993 | MS.gene59848:CDS |
| GGTAAGCTCAGTACTGAAAT+TGG | 0.267652 | 8.3:+53884190 | MS.gene59848:CDS |
| ATCTTCACCTTCATGAAGTT+TGG | 0.293563 | 8.3:-53884299 | None:intergenic |
| ATGGCACTGCTGCTGCTAAA+TGG | 0.310932 | 8.3:+53885928 | MS.gene59848:CDS |
| CACCCTTATCAATTACTTCA+AGG | 0.382574 | 8.3:-53885905 | None:intergenic |
| AAATGTTCCATGTAGCCATT+TGG | 0.413070 | 8.3:-53885990 | None:intergenic |
| CATCCTTGAAGTAATTGATA+AGG | 0.441221 | 8.3:+53885902 | MS.gene59848:CDS |
| AAACTCTGGACTTATGTCAT+AGG | 0.456073 | 8.3:+53884343 | MS.gene59848:CDS |
| AACACTTATAAGCTCTTTGG+TGG | 0.457999 | 8.3:+53885846 | MS.gene59848:CDS |
| AACTTCATGAAGGTGAAGAT+TGG | 0.483425 | 8.3:+53884302 | MS.gene59848:CDS |
| ATCCTTGAAGTAATTGATAA+GGG | 0.489024 | 8.3:+53885903 | MS.gene59848:CDS |
| AGATTGGCATCACTCTGATT+CGG | 0.512517 | 8.3:+53884318 | MS.gene59848:CDS |
| TGACCCTCCAAATGGCTACA+TGG | 0.521176 | 8.3:+53885983 | MS.gene59848:CDS |
| GAGGATATTGACCCTCCAAA+TGG | 0.540200 | 8.3:+53885975 | MS.gene59848:CDS |
| TGTTCCATGTAGCCATTTGG+AGG | 0.542543 | 8.3:-53885987 | None:intergenic |
| GAAGTAATTGATAAGGGTGA+TGG | 0.549119 | 8.3:+53885909 | MS.gene59848:CDS |
| AGATATTGATGAGCATTATA+GGG | 0.551405 | 8.3:+53885869 | MS.gene59848:CDS |
| ACTCTGATTCGGTTAAACTC+TGG | 0.574538 | 8.3:+53884329 | MS.gene59848:CDS |
| CATCATACCAAACTTCATGA+AGG | 0.595182 | 8.3:+53884292 | MS.gene59848:CDS |
| GTTGATGCTCATCTTGTCAA+AGG | 0.600604 | 8.3:+53886032 | MS.gene59848:CDS |
| ATAATTCACAACAGATGGCA+AGG | 0.621271 | 8.3:+53885773 | MS.gene59848:intron |
| GTTCCATGTAGCCATTTGGA+GGG | 0.622662 | 8.3:-53885986 | None:intergenic |
| TAGATTGTAGAACTTATCAG+AGG | 0.623153 | 8.3:-53884224 | None:intergenic |
| AGATTGTAGAACTTATCAGA+GGG | 0.653447 | 8.3:-53884223 | None:intergenic |
| TGAATATGAAAAGATCAATG+AGG | 0.667026 | 8.3:+53885956 | MS.gene59848:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAAAATGTTAATTGTT+AGG | - | chr8.3:53884547-53884566 | None:intergenic | 10.0% |
| !!! | AGTTTATTTGTTAAAAAAAT+AGG | + | chr8.3:53885680-53885699 | MS.gene59848:intron | 10.0% |
| !!! | GCTTTTAATATTTTTTTTTA+TGG | - | chr8.3:53885348-53885367 | None:intergenic | 10.0% |
| !! | AATCATATAAAGAATATATG+TGG | + | chr8.3:53885550-53885569 | MS.gene59848:intron | 15.0% |
| !! | ATAAATAAAATTAACAACAC+TGG | + | chr8.3:53885085-53885104 | MS.gene59848:intron | 15.0% |
| !! | ATGATTACAAACTATTAAAA+TGG | - | chr8.3:53884844-53884863 | None:intergenic | 15.0% |
| !! | GTAAGAATTATGAATTATTT+GGG | + | chr8.3:53885513-53885532 | MS.gene59848:intron | 15.0% |
| !! | TCATAAAATATGTCAATAAT+TGG | + | chr8.3:53885043-53885062 | MS.gene59848:intron | 15.0% |
| !! | TCATTAGAAAAAATATTCAT+TGG | + | chr8.3:53885609-53885628 | MS.gene59848:intron | 15.0% |
| !! | TGTAAGAATTATGAATTATT+TGG | + | chr8.3:53885512-53885531 | MS.gene59848:intron | 15.0% |
| !!! | AATATAGTAGTTTTCTTTTT+AGG | + | chr8.3:53885644-53885663 | MS.gene59848:intron | 15.0% |
| !!! | AATTTTATTTATGTTGTACT+GGG | - | chr8.3:53885077-53885096 | None:intergenic | 15.0% |
| !!! | ATATAGTAGTTTTCTTTTTA+GGG | + | chr8.3:53885645-53885664 | MS.gene59848:intron | 15.0% |
| !!! | TAATTTTATTTATGTTGTAC+TGG | - | chr8.3:53885078-53885097 | None:intergenic | 15.0% |
| !!! | TTATATCGATTATTTATTAC+TGG | - | chr8.3:53885134-53885153 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGTGG+TGG | - | chr8.3:53885268-53885287 | None:intergenic | 15.0% |
| !! | AAAATAATCCTATAGGTATA+AGG | + | chr8.3:53884981-53885000 | MS.gene59848:intron | 20.0% |
| !! | AATAATCCTCTATAGATATA+AGG | + | chr8.3:53884905-53884924 | MS.gene59848:intron | 20.0% |
| !! | AATCATATAAGATGATGATT+TGG | - | chr8.3:53884405-53884424 | None:intergenic | 20.0% |
| !! | CAAATGAATTCTATAAAGAT+TGG | + | chr8.3:53884506-53884525 | MS.gene59848:intron | 20.0% |
| !! | CAATCTTTATAGAATTCATT+TGG | - | chr8.3:53884508-53884527 | None:intergenic | 20.0% |
| !! | TTATACTTCTAACAGAAAAA+AGG | + | chr8.3:53884462-53884481 | MS.gene59848:intron | 20.0% |
| !!! | CTTTTGATCTAAAAGATATA+AGG | + | chr8.3:53884624-53884643 | MS.gene59848:intron | 20.0% |
| !!! | TTAAAGAGATTTGATTTTGT+AGG | + | chr8.3:53884783-53884802 | MS.gene59848:intron | 20.0% |
| ! | AAAAACACTTATAAGCTCTT+TGG | + | chr8.3:53885843-53885862 | MS.gene59848:CDS | 25.0% |
| ! | AATATGTTACTGTAGTTGTT+AGG | - | chr8.3:53884575-53884594 | None:intergenic | 25.0% |
| ! | AATGTCGAAAATAATCCTAT+AGG | + | chr8.3:53884974-53884993 | MS.gene59848:intron | 25.0% |
| ! | AGATATTGATGAGCATTATA+GGG | + | chr8.3:53885869-53885888 | MS.gene59848:CDS | 25.0% |
| ! | ATCCTTGAAGTAATTGATAA+GGG | + | chr8.3:53885903-53885922 | MS.gene59848:CDS | 25.0% |
| ! | TGAATATGAAAAGATCAATG+AGG | + | chr8.3:53885956-53885975 | MS.gene59848:CDS | 25.0% |
| ! | TGATCTAAAAGATATAAGGT+TGG | + | chr8.3:53884628-53884647 | MS.gene59848:intron | 25.0% |
| AAAAGAGTCAAAAGTGAAAG+AGG | - | chr8.3:53884680-53884699 | None:intergenic | 30.0% | |
| AAAGTGAAAGAGGTAATTGA+AGG | - | chr8.3:53884670-53884689 | None:intergenic | 30.0% | |
| AAGTCAAACCTTATACCTAT+AGG | - | chr8.3:53884992-53885011 | None:intergenic | 30.0% | |
| AGATTGTAGAACTTATCAGA+GGG | - | chr8.3:53884226-53884245 | None:intergenic | 30.0% | |
| CATCCTTGAAGTAATTGATA+AGG | + | chr8.3:53885902-53885921 | MS.gene59848:CDS | 30.0% | |
| CGACATAATAACATTTGCAA+AGG | + | chr8.3:53884810-53884829 | MS.gene59848:intron | 30.0% | |
| CTTCGTAAACTTATCTAAGT+TGG | + | chr8.3:53885196-53885215 | MS.gene59848:intron | 30.0% | |
| GAGATATTGATGAGCATTAT+AGG | + | chr8.3:53885868-53885887 | MS.gene59848:CDS | 30.0% | |
| TAGATTGTAGAACTTATCAG+AGG | - | chr8.3:53884227-53884246 | None:intergenic | 30.0% | |
| ! | GTTTGTTGAATGTTAGTTTG+CGG | - | chr8.3:53884752-53884771 | None:intergenic | 30.0% |
| ! | TAGTGATATTTTGCCATTGT+CGG | - | chr8.3:53885305-53885324 | None:intergenic | 30.0% |
| !! | AAAATTAACAACACTGGCTT+TGG | + | chr8.3:53885091-53885110 | MS.gene59848:intron | 30.0% |
| !! | AGAGATTTGATTTTGTAGGA+AGG | + | chr8.3:53884787-53884806 | MS.gene59848:intron | 30.0% |
| !! | TCACTTTTGACTCTTTTGAA+CGG | + | chr8.3:53884683-53884702 | MS.gene59848:intron | 30.0% |
| !! | TGATGATTTGGTTATCAATC+AGG | - | chr8.3:53884393-53884412 | None:intergenic | 30.0% |
| !! | TTTGTTGAATGTTAGTTTGC+GGG | - | chr8.3:53884751-53884770 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTTTGTGGTGGC+CGG | - | chr8.3:53885264-53885283 | None:intergenic | 30.0% |
| AAAAACTACACAACCGACAA+TGG | + | chr8.3:53885289-53885308 | MS.gene59848:intron | 35.0% | |
| AAACTCTGGACTTATGTCAT+AGG | + | chr8.3:53884343-53884362 | MS.gene59848:CDS | 35.0% | |
| AAATGTTCCATGTAGCCATT+TGG | - | chr8.3:53885993-53886012 | None:intergenic | 35.0% | |
| AACACTTATAAGCTCTTTGG+TGG | + | chr8.3:53885846-53885865 | MS.gene59848:CDS | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | + | chr8.3:53884302-53884321 | MS.gene59848:CDS | 35.0% | |
| ATAATTCACAACAGATGGCA+AGG | + | chr8.3:53885773-53885792 | MS.gene59848:intron | 35.0% | |
| ATAGATATAAGGTTGACGTG+TGG | + | chr8.3:53884916-53884935 | MS.gene59848:intron | 35.0% | |
| ATCTTCACCTTCATGAAGTT+TGG | - | chr8.3:53884302-53884321 | None:intergenic | 35.0% | |
| CACCCTTATCAATTACTTCA+AGG | - | chr8.3:53885908-53885927 | None:intergenic | 35.0% | |
| CATCATACCAAACTTCATGA+AGG | + | chr8.3:53884292-53884311 | MS.gene59848:CDS | 35.0% | |
| CCATCATAATTCACAACAGA+TGG | + | chr8.3:53885768-53885787 | MS.gene59848:intron | 35.0% | |
| CCATCTGTTGTGAATTATGA+TGG | - | chr8.3:53885771-53885790 | None:intergenic | 35.0% | |
| CGTCAACCTTATATCTATAG+AGG | - | chr8.3:53884914-53884933 | None:intergenic | 35.0% | |
| CTTGAAAATCTCATGCCAAA+TGG | + | chr8.3:53884724-53884743 | MS.gene59848:intron | 35.0% | |
| GAAGTAATTGATAAGGGTGA+TGG | + | chr8.3:53885909-53885928 | MS.gene59848:CDS | 35.0% | |
| TATTTATGTTGTACTGGGCT+GGG | - | chr8.3:53885072-53885091 | None:intergenic | 35.0% | |
| TGAAAGAGGTAATTGAAGGA+GGG | - | chr8.3:53884666-53884685 | None:intergenic | 35.0% | |
| TGAGCATTATAGGGTCTTTA+AGG | + | chr8.3:53885878-53885897 | MS.gene59848:CDS | 35.0% | |
| TGTTGTGAATTATGATGGCA+CGG | - | chr8.3:53885766-53885785 | None:intergenic | 35.0% | |
| TTATTTATGTTGTACTGGGC+TGG | - | chr8.3:53885073-53885092 | None:intergenic | 35.0% | |
| ! | AATGGCTACATGGAACATTT+TGG | + | chr8.3:53885993-53886012 | MS.gene59848:CDS | 35.0% |
| !! | TAGGTATAAGGTTTGACTTG+TGG | + | chr8.3:53884993-53885012 | MS.gene59848:intron | 35.0% |
| !! | TATAAGGTTTGACTTGTGGT+TGG | + | chr8.3:53884997-53885016 | MS.gene59848:intron | 35.0% |
| !! | TTTGGCATGAGATTTTCAAG+TGG | - | chr8.3:53884724-53884743 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTTTGTGGTGGCC+GGG | - | chr8.3:53885263-53885282 | None:intergenic | 35.0% |
| AGATTGGCATCACTCTGATT+CGG | + | chr8.3:53884318-53884337 | MS.gene59848:CDS | 40.0% | |
| ATATAAGGTTGACGTGTGGT+TGG | + | chr8.3:53884920-53884939 | MS.gene59848:intron | 40.0% | |
| CATTATACATGCAACGTCCA+GGG | + | chr8.3:53885230-53885249 | MS.gene59848:intron | 40.0% | |
| GTGAAAGAGGTAATTGAAGG+AGG | - | chr8.3:53884667-53884686 | None:intergenic | 40.0% | |
| GTTGATGCTCATCTTGTCAA+AGG | + | chr8.3:53886032-53886051 | MS.gene59848:CDS | 40.0% | |
| GTTGTGAATTATGATGGCAC+GGG | - | chr8.3:53885765-53885784 | None:intergenic | 40.0% | |
| ! | GGTAAGCTCAGTACTGAAAT+TGG | + | chr8.3:53884190-53884209 | MS.gene59848:CDS | 40.0% |
| !! | ACTCTGATTCGGTTAAACTC+TGG | + | chr8.3:53884329-53884348 | MS.gene59848:CDS | 40.0% |
| !!! | GCATGAGATTTTCAAGTGGA+AGG | - | chr8.3:53884720-53884739 | None:intergenic | 40.0% |
| !!! | TTTTTTTTTTGTGGTGGCCG+GGG | - | chr8.3:53885262-53885281 | None:intergenic | 40.0% |
| GAGGATATTGACCCTCCAAA+TGG | + | chr8.3:53885975-53885994 | MS.gene59848:CDS | 45.0% | |
| GAGGTAATTGAAGGAGGGAT+AGG | - | chr8.3:53884661-53884680 | None:intergenic | 45.0% | |
| GCATTATACATGCAACGTCC+AGG | + | chr8.3:53885229-53885248 | MS.gene59848:intron | 45.0% | |
| GTTCCATGTAGCCATTTGGA+GGG | - | chr8.3:53885989-53886008 | None:intergenic | 45.0% | |
| TGTTCCATGTAGCCATTTGG+AGG | - | chr8.3:53885990-53886009 | None:intergenic | 45.0% | |
| !! | TGTTAGTTTGCGGGACCATT+TGG | - | chr8.3:53884742-53884761 | None:intergenic | 45.0% |
| !!! | ACAATAAATATTTAATTTAT+AGG | - | chr8.3:53885580-53885599 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTTTG+TGG | - | chr8.3:53885271-53885290 | None:intergenic | 5.0% |
| ATGGCACTGCTGCTGCTAAA+TGG | + | chr8.3:53885928-53885947 | MS.gene59848:CDS | 50.0% | |
| TGACCCTCCAAATGGCTACA+TGG | + | chr8.3:53885983-53886002 | MS.gene59848:CDS | 50.0% | |
| AACGTCCAGGGTTCAAACCC+CGG | + | chr8.3:53885242-53885261 | MS.gene59848:intron | 55.0% | |
| GGTGGCCGGGGTTTGAACCC+TGG | - | chr8.3:53885250-53885269 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 53884178 | 53886073 | 53884178 | ID=MS.gene59848 |
| chr8.3 | mRNA | 53884178 | 53886073 | 53884178 | ID=MS.gene59848.t1;Parent=MS.gene59848 |
| chr8.3 | exon | 53884178 | 53884364 | 53884178 | ID=MS.gene59848.t1.exon1;Parent=MS.gene59848.t1 |
| chr8.3 | CDS | 53884178 | 53884364 | 53884178 | ID=cds.MS.gene59848.t1;Parent=MS.gene59848.t1 |
| chr8.3 | exon | 53885787 | 53886073 | 53885787 | ID=MS.gene59848.t1.exon2;Parent=MS.gene59848.t1 |
| chr8.3 | CDS | 53885787 | 53886073 | 53885787 | ID=cds.MS.gene59848.t1;Parent=MS.gene59848.t1 |
| Gene Sequence |
| Protein sequence |
