Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058384.t1 | XP_003628200.1 | 84.1 | 157 | 24 | 1 | 1 | 157 | 1 | 156 | 1.90E-74 | 288.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058384.t1 | Q9SSK5 | 34.7 | 150 | 95 | 3 | 3 | 150 | 7 | 155 | 2.3e-20 | 100.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058384.t1 | G7L7T5 | 84.1 | 157 | 24 | 1 | 1 | 157 | 1 | 156 | 1.3e-74 | 288.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058384 | MS.gene59848 | 0.843307 | 1.52E-58 | -1.69E-46 |
| MS.gene058384 | MS.gene74354 | 0.845854 | 3.13E-59 | -1.69E-46 |
| MS.gene058384 | MS.gene77770 | 0.861056 | 1.34E-63 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058384.t1 | MTR_8g045490 | 84.076 | 157 | 24 | 1 | 1 | 157 | 1 | 156 | 1.13e-97 | 278 |
| MS.gene058384.t1 | MTR_8g045400 | 80.255 | 157 | 30 | 1 | 1 | 157 | 1 | 156 | 4.08e-92 | 264 |
| MS.gene058384.t1 | MTR_8g045520 | 76.433 | 157 | 37 | 0 | 1 | 157 | 1 | 157 | 3.14e-90 | 259 |
| MS.gene058384.t1 | MTR_8g045570 | 73.026 | 152 | 41 | 0 | 1 | 152 | 1 | 152 | 1.00e-83 | 243 |
| MS.gene058384.t1 | MTR_8g045695 | 70.701 | 157 | 45 | 1 | 1 | 157 | 1 | 156 | 8.52e-83 | 241 |
| MS.gene058384.t1 | MTR_8g045300 | 69.231 | 156 | 48 | 0 | 1 | 156 | 1 | 156 | 1.46e-80 | 235 |
| MS.gene058384.t1 | MTR_8g045555 | 71.053 | 152 | 44 | 0 | 1 | 152 | 1 | 152 | 1.19e-79 | 233 |
| MS.gene058384.t1 | MTR_8g045735 | 68.387 | 155 | 48 | 1 | 1 | 155 | 1 | 154 | 1.63e-79 | 232 |
| MS.gene058384.t1 | MTR_8g045665 | 67.516 | 157 | 50 | 1 | 1 | 157 | 1 | 156 | 1.10e-77 | 228 |
| MS.gene058384.t1 | MTR_8g045640 | 68.153 | 157 | 49 | 1 | 1 | 157 | 1 | 156 | 2.77e-77 | 227 |
| MS.gene058384.t1 | MTR_8g045560 | 66.242 | 157 | 52 | 1 | 1 | 157 | 1 | 156 | 3.76e-75 | 221 |
| MS.gene058384.t1 | MTR_1g030810 | 44.444 | 153 | 82 | 2 | 1 | 151 | 1 | 152 | 1.46e-39 | 131 |
| MS.gene058384.t1 | MTR_1g030820 | 40.523 | 153 | 88 | 2 | 1 | 151 | 1 | 152 | 9.60e-39 | 129 |
| MS.gene058384.t1 | MTR_1g030840 | 39.103 | 156 | 87 | 4 | 1 | 149 | 1 | 155 | 5.58e-29 | 104 |
| MS.gene058384.t1 | MTR_1g031640 | 37.162 | 148 | 84 | 5 | 7 | 152 | 7 | 147 | 7.85e-25 | 93.6 |
| MS.gene058384.t1 | MTR_8g012550 | 33.103 | 145 | 94 | 3 | 6 | 149 | 8 | 150 | 9.29e-25 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058384.t1 | AT5G28010 | 33.333 | 150 | 97 | 3 | 3 | 150 | 15 | 163 | 1.22e-24 | 93.6 |
| MS.gene058384.t1 | AT5G28010 | 33.333 | 150 | 97 | 3 | 3 | 150 | 15 | 163 | 1.22e-24 | 93.6 |
| MS.gene058384.t1 | AT1G70890 | 34.667 | 150 | 95 | 3 | 3 | 150 | 7 | 155 | 2.38e-24 | 92.8 |
| MS.gene058384.t1 | AT1G70840 | 32.000 | 150 | 99 | 3 | 3 | 150 | 20 | 168 | 8.01e-22 | 86.7 |
| MS.gene058384.t1 | AT1G70830 | 32.667 | 150 | 98 | 3 | 3 | 150 | 22 | 170 | 1.18e-21 | 86.3 |
| MS.gene058384.t1 | AT1G70830 | 32.667 | 150 | 98 | 3 | 3 | 150 | 22 | 170 | 2.45e-21 | 85.9 |
| MS.gene058384.t1 | AT5G28000 | 31.333 | 150 | 100 | 3 | 3 | 150 | 13 | 161 | 7.40e-21 | 84.0 |
| MS.gene058384.t1 | AT1G70830 | 32.667 | 150 | 98 | 3 | 3 | 150 | 22 | 170 | 7.98e-21 | 85.9 |
| MS.gene058384.t1 | AT1G70830 | 32.667 | 150 | 98 | 3 | 3 | 150 | 22 | 170 | 1.86e-20 | 86.3 |
| MS.gene058384.t1 | AT1G70830 | 31.333 | 150 | 100 | 3 | 3 | 150 | 184 | 332 | 6.10e-19 | 82.0 |
| MS.gene058384.t1 | AT1G70850 | 31.333 | 150 | 100 | 3 | 3 | 150 | 9 | 157 | 9.10e-20 | 82.8 |
| MS.gene058384.t1 | AT1G23120 | 29.167 | 144 | 97 | 3 | 7 | 150 | 7 | 145 | 1.49e-19 | 80.1 |
| MS.gene058384.t1 | AT1G70870 | 40.625 | 96 | 56 | 1 | 56 | 151 | 44 | 138 | 2.28e-19 | 79.3 |
| MS.gene058384.t1 | AT1G70830 | 31.333 | 150 | 100 | 3 | 3 | 150 | 137 | 285 | 2.40e-19 | 82.4 |
| MS.gene058384.t1 | AT1G70850 | 31.333 | 150 | 100 | 3 | 3 | 150 | 9 | 157 | 2.46e-19 | 82.8 |
| MS.gene058384.t1 | AT1G70850 | 31.429 | 140 | 93 | 3 | 13 | 150 | 175 | 313 | 9.73e-18 | 78.6 |
| MS.gene058384.t1 | AT1G70850 | 31.333 | 150 | 100 | 3 | 3 | 150 | 9 | 157 | 2.46e-19 | 82.8 |
| MS.gene058384.t1 | AT1G70850 | 31.429 | 140 | 93 | 3 | 13 | 150 | 175 | 313 | 9.73e-18 | 78.6 |
| MS.gene058384.t1 | AT1G23130 | 29.530 | 149 | 103 | 2 | 3 | 150 | 10 | 157 | 3.38e-19 | 79.3 |
| MS.gene058384.t1 | AT1G23120 | 29.167 | 144 | 97 | 3 | 7 | 150 | 57 | 195 | 3.39e-19 | 80.5 |
| MS.gene058384.t1 | AT1G70880 | 30.667 | 150 | 101 | 3 | 3 | 150 | 8 | 156 | 1.56e-18 | 77.8 |
| MS.gene058384.t1 | AT1G14930 | 31.210 | 157 | 105 | 3 | 1 | 156 | 1 | 155 | 2.58e-18 | 77.0 |
| MS.gene058384.t1 | AT4G23670 | 32.680 | 153 | 100 | 3 | 1 | 152 | 1 | 151 | 2.59e-18 | 77.0 |
| MS.gene058384.t1 | AT2G01520 | 30.065 | 153 | 104 | 3 | 1 | 152 | 1 | 151 | 1.22e-16 | 72.8 |
| MS.gene058384.t1 | AT4G23680 | 30.921 | 152 | 102 | 3 | 1 | 151 | 1 | 150 | 1.23e-15 | 70.1 |
| MS.gene058384.t1 | AT4G14060 | 30.065 | 153 | 104 | 3 | 1 | 152 | 1 | 151 | 4.07e-15 | 68.6 |
| MS.gene058384.t1 | AT1G14940 | 29.299 | 157 | 108 | 3 | 1 | 156 | 1 | 155 | 6.91e-15 | 68.2 |
| MS.gene058384.t1 | AT1G35260 | 25.166 | 151 | 109 | 3 | 2 | 150 | 1 | 149 | 7.93e-15 | 67.8 |
| MS.gene058384.t1 | AT2G01530 | 29.412 | 153 | 105 | 3 | 1 | 152 | 1 | 151 | 1.58e-14 | 67.0 |
| MS.gene058384.t1 | AT1G24020 | 29.605 | 152 | 105 | 2 | 1 | 151 | 1 | 151 | 9.20e-14 | 65.1 |
| MS.gene058384.t1 | AT1G24020 | 29.605 | 152 | 105 | 2 | 1 | 151 | 1 | 151 | 9.20e-14 | 65.1 |
| MS.gene058384.t1 | AT1G14950 | 28.025 | 157 | 110 | 3 | 1 | 156 | 1 | 155 | 4.71e-13 | 63.2 |
| MS.gene058384.t1 | AT1G30990 | 29.139 | 151 | 103 | 4 | 1 | 150 | 1 | 148 | 6.02e-13 | 62.8 |
| MS.gene058384.t1 | AT3G26460 | 28.205 | 156 | 104 | 5 | 1 | 152 | 1 | 152 | 2.03e-11 | 58.9 |
Find 28 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCATTATAGGGTCTTTA+AGG | 0.251134 | 3.2:+2695596 | MS.gene058384:CDS |
| GAGATATTGATGAGCATTAT+AGG | 0.261538 | 3.2:+2695586 | MS.gene058384:CDS |
| AATGGCTACATGGAACATTT+TGG | 0.264766 | 3.2:+2695711 | MS.gene058384:CDS |
| GGTAAGCTCAGTACTGAAAT+TGG | 0.267652 | 3.2:+2693202 | MS.gene058384:CDS |
| ATCTTCACCTTCATGAAGTT+TGG | 0.293563 | 3.2:-2693311 | None:intergenic |
| ATGGCACTGCTGCTGCTAAA+TGG | 0.310932 | 3.2:+2695646 | MS.gene058384:CDS |
| CACCCTTATCAATTACTTCA+AGG | 0.382574 | 3.2:-2695623 | None:intergenic |
| AAATGTTCCATGTAGCCATT+TGG | 0.413070 | 3.2:-2695708 | None:intergenic |
| CATCCTTGAAGTAATTGATA+AGG | 0.441221 | 3.2:+2695620 | MS.gene058384:CDS |
| CACCTTCATGAAGTTTGGTA+TGG | 0.456107 | 3.2:-2693306 | None:intergenic |
| AACACTTATAAGCTCTTTGG+TGG | 0.457999 | 3.2:+2695564 | MS.gene058384:CDS |
| TTCTAAGAAATGGTGCTCTC+TGG | 0.461766 | 3.2:+2693181 | None:intergenic |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | 3.2:+2693355 | MS.gene058384:CDS |
| AACTTCATGAAGGTGAAGAT+TGG | 0.483425 | 3.2:+2693314 | MS.gene058384:CDS |
| ATCCTTGAAGTAATTGATAA+GGG | 0.489024 | 3.2:+2695621 | MS.gene058384:CDS |
| AGATTGGCATCACTCTGATT+CGG | 0.512517 | 3.2:+2693330 | MS.gene058384:CDS |
| TGACCCTCCAAATGGCTACA+TGG | 0.521176 | 3.2:+2695701 | MS.gene058384:CDS |
| GAGGATATTGACCCTCCAAA+TGG | 0.540200 | 3.2:+2695693 | MS.gene058384:CDS |
| TGTTCCATGTAGCCATTTGG+AGG | 0.542543 | 3.2:-2695705 | None:intergenic |
| GAAGTAATTGATAAGGGTGA+TGG | 0.549119 | 3.2:+2695627 | MS.gene058384:CDS |
| AGATATTGATGAGCATTATA+GGG | 0.551405 | 3.2:+2695587 | MS.gene058384:CDS |
| GTTGATGCTCATCTTGTCAA+AGG | 0.600604 | 3.2:+2695750 | MS.gene058384:CDS |
| CACCATACCAAACTTCATGA+AGG | 0.601337 | 3.2:+2693304 | MS.gene058384:CDS |
| ACTCTGATTCGGTTAAACAC+TGG | 0.619526 | 3.2:+2693341 | MS.gene058384:CDS |
| GTTCCATGTAGCCATTTGGA+GGG | 0.622662 | 3.2:-2695704 | None:intergenic |
| TAGATTGTAGAACTTATCAG+AGG | 0.623153 | 3.2:-2693236 | None:intergenic |
| AGATTGTAGAACTTATCAGA+GGG | 0.653447 | 3.2:-2693235 | None:intergenic |
| TGAATATGAAAAGATCAATG+AGG | 0.667026 | 3.2:+2695674 | MS.gene058384:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTTATATGTTAAAAAAAT+AGG | + | chr3.2:2695398-2695417 | MS.gene058384:intron | 10.0% |
| !! | GTAAAAATTATGAATTATTT+GGG | + | chr3.2:2695239-2695258 | MS.gene058384:intron | 10.0% |
| !! | TATGAACAATAAATATTTAT+AGG | - | chr3.2:2695303-2695322 | None:intergenic | 10.0% |
| !! | TGTAAAAATTATGAATTATT+TGG | + | chr3.2:2695238-2695257 | MS.gene058384:intron | 10.0% |
| !!! | AATATAATAGTTTTCTTTTT+AGG | + | chr3.2:2695362-2695381 | MS.gene058384:intron | 10.0% |
| !!! | AGTTTTTTTTTTTTTTTTTG+TGG | - | chr3.2:2694998-2695017 | None:intergenic | 10.0% |
| !!! | GCTTTTAATATTTTTTTTTA+TGG | - | chr3.2:2695070-2695089 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAACTACACAA+CGG | + | chr3.2:2695004-2695023 | MS.gene058384:intron | 15.0% |
| !! | AATCATATAAAGAATATATG+TGG | + | chr3.2:2695273-2695292 | MS.gene058384:intron | 15.0% |
| !! | ATGATTACAAACTATTAAAA+TGG | - | chr3.2:2694012-2694031 | None:intergenic | 15.0% |
| !! | GTACAACATAAATAAAATTA+AGG | + | chr3.2:2694425-2694444 | MS.gene058384:intron | 15.0% |
| !! | TCATAAAATATGTCAATAAT+TGG | + | chr3.2:2694395-2694414 | MS.gene058384:intron | 15.0% |
| !!! | AATTTTATTTATGTTGTACT+GGG | - | chr3.2:2694424-2694443 | None:intergenic | 15.0% |
| !!! | TAATTTTATTTATGTTGTAC+TGG | - | chr3.2:2694425-2694444 | None:intergenic | 15.0% |
| !!! | TCTTTAGAAAAAATATTCAT+TGG | + | chr3.2:2695327-2695346 | MS.gene058384:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGTGG+TGG | - | chr3.2:2694995-2695014 | None:intergenic | 15.0% |
| !! | AATCATATAAGATGATGATT+TGG | - | chr3.2:2693417-2693436 | None:intergenic | 20.0% |
| !! | CAAATGAATTCTATAAAGAT+TGG | + | chr3.2:2693524-2693543 | MS.gene058384:intron | 20.0% |
| !! | CAATCTTTATAGAATTCATT+TGG | - | chr3.2:2693526-2693545 | None:intergenic | 20.0% |
| !! | GAAATAAACTCAAAACTTAA+AGG | - | chr3.2:2694598-2694617 | None:intergenic | 20.0% |
| !! | TAGGTCTTCTATAAAATTAT+GGG | - | chr3.2:2693717-2693736 | None:intergenic | 20.0% |
| !! | TATAATCCTCTATAGATATA+AGG | + | chr3.2:2694259-2694278 | MS.gene058384:intron | 20.0% |
| !! | TGTACACATCAATAAAAAAT+AGG | + | chr3.2:2694056-2694075 | MS.gene058384:intron | 20.0% |
| !! | TTAGGTCTTCTATAAAATTA+TGG | - | chr3.2:2693718-2693737 | None:intergenic | 20.0% |
| !!! | TTAAAGAGATTTGATTTTGT+AGG | + | chr3.2:2693951-2693970 | MS.gene058384:intron | 20.0% |
| !!! | TTTAAGTTTGAAGTTTGTTT+CGG | + | chr3.2:2694468-2694487 | MS.gene058384:intron | 20.0% |
| ! | AAAAACACTTATAAGCTCTT+TGG | + | chr3.2:2695561-2695580 | MS.gene058384:CDS | 25.0% |
| ! | AAAATAGGAAAATACTTGTG+TGG | + | chr3.2:2694071-2694090 | MS.gene058384:intron | 25.0% |
| ! | AAAATGTCGAAAATAATCCT+AGG | + | chr3.2:2694326-2694345 | MS.gene058384:intron | 25.0% |
| ! | AGATATTGATGAGCATTATA+GGG | + | chr3.2:2695587-2695606 | MS.gene058384:CDS | 25.0% |
| ! | ATCCTTGAAGTAATTGATAA+GGG | + | chr3.2:2695621-2695640 | MS.gene058384:CDS | 25.0% |
| ! | CAAACAAACTTCAAACTTAA+AGG | - | chr3.2:2694529-2694548 | None:intergenic | 25.0% |
| ! | CTATACTTCTAACAGAAAAA+AGG | + | chr3.2:2693480-2693499 | MS.gene058384:intron | 25.0% |
| ! | GAAACAAACTTCAAACTTAA+AGG | - | chr3.2:2694469-2694488 | None:intergenic | 25.0% |
| ! | TATAAAATTATGGGTAGCAA+TGG | - | chr3.2:2693708-2693727 | None:intergenic | 25.0% |
| ! | TGAATATGAAAAGATCAATG+AGG | + | chr3.2:2695674-2695693 | MS.gene058384:CDS | 25.0% |
| ! | TTAATGTTACTGTAGTTGTT+AGG | - | chr3.2:2693736-2693755 | None:intergenic | 25.0% |
| !! | AGTTTGTTTGAAGTTTGTTT+CGG | + | chr3.2:2694539-2694558 | MS.gene058384:intron | 25.0% |
| !! | CTTTTGATCTAAAAGATACA+AGG | + | chr3.2:2693784-2693803 | MS.gene058384:intron | 25.0% |
| !!! | GTTTTGAGTTTATTTCAGAT+AGG | + | chr3.2:2694602-2694621 | MS.gene058384:intron | 25.0% |
| !!! | TTTAAGTTTCGAGTTTGTTT+CGG | - | chr3.2:2694681-2694700 | None:intergenic | 25.0% |
| AGATTGTAGAACTTATCAGA+GGG | - | chr3.2:2693238-2693257 | None:intergenic | 30.0% | |
| AGTCAACCTTATATCTATAG+AGG | - | chr3.2:2694268-2694287 | None:intergenic | 30.0% | |
| ATAGGTCCATTAAGTTTCTA+AGG | + | chr3.2:2694562-2694581 | MS.gene058384:intron | 30.0% | |
| ATCTGACCTTAGAAACTTAA+TGG | - | chr3.2:2694571-2694590 | None:intergenic | 30.0% | |
| CATCCTTGAAGTAATTGATA+AGG | + | chr3.2:2695620-2695639 | MS.gene058384:CDS | 30.0% | |
| CCTTTCTATCAAATCAACTT+TGG | - | chr3.2:2694652-2694671 | None:intergenic | 30.0% | |
| CGAAAATAATCCTAGGTATA+AGG | + | chr3.2:2694333-2694352 | MS.gene058384:intron | 30.0% | |
| CGACATAATAACATTTGCAA+AGG | + | chr3.2:2693978-2693997 | MS.gene058384:intron | 30.0% | |
| CTGAAACCTTAGAAACTTAA+AGG | + | chr3.2:2694740-2694759 | MS.gene058384:intron | 30.0% | |
| CTGAAACCTTAGAAACTTAA+AGG | - | chr3.2:2694759-2694740 | None:intergenic | 30.0% | |
| GAAACAAACTCGAAACTTAA+AGG | + | chr3.2:2694680-2694699 | MS.gene058384:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr3.2:2694951-2694970 | MS.gene058384:intron | 30.0% | |
| GAGATATTGATGAGCATTAT+AGG | + | chr3.2:2695586-2695605 | MS.gene058384:CDS | 30.0% | |
| GATACAAACGTGAAACTTAA+AGG | + | chr3.2:2694771-2694790 | MS.gene058384:intron | 30.0% | |
| TAGATTGTAGAACTTATCAG+AGG | - | chr3.2:2693239-2693258 | None:intergenic | 30.0% | |
| ! | ATAGGTCCTTTAAGTTTCTA+AGG | + | chr3.2:2694491-2694510 | MS.gene058384:intron | 30.0% |
| ! | ATAGGTCCTTTAAGTTTCTA+AGG | - | chr3.2:2694510-2694491 | None:intergenic | 30.0% |
| ! | GTTTGTTGAATGTTAGTTTG+CGG | - | chr3.2:2693920-2693939 | None:intergenic | 30.0% |
| !! | AAGCCAGTGTTGTTAATTTT+AGG | - | chr3.2:2694815-2694834 | None:intergenic | 30.0% |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | + | chr3.2:2694502-2694521 | MS.gene058384:intron | 30.0% |
| !! | AAGTTTCTAAGGTTTCAGAT+TGG | - | chr3.2:2694521-2694502 | None:intergenic | 30.0% |
| !! | AGAGATTTGATTTTGTAGGA+AGG | + | chr3.2:2693955-2693974 | MS.gene058384:intron | 30.0% |
| !! | ATAGATATAAGGTTGACTTG+TGG | + | chr3.2:2694270-2694289 | MS.gene058384:intron | 30.0% |
| !! | ATTTTAGAGAAAGACTTGTG+TGG | - | chr3.2:2694240-2694259 | None:intergenic | 30.0% |
| !! | CCAAAGTTGATTTGATAGAA+AGG | + | chr3.2:2694649-2694668 | MS.gene058384:intron | 30.0% |
| !! | TTAAGTTTCTAAGGTCAGAT+AGG | + | chr3.2:2694571-2694590 | MS.gene058384:intron | 30.0% |
| !! | TTTGTTGAATGTTAGTTTGC+GGG | - | chr3.2:2693919-2693938 | None:intergenic | 30.0% |
| AAAAACTACACAACGGACAA+TGG | + | chr3.2:2695011-2695030 | MS.gene058384:intron | 35.0% | |
| AAAAGAGTCGAAAGAGAAAG+AGG | - | chr3.2:2693840-2693859 | None:intergenic | 35.0% | |
| AAACACTGGACTTATGTCAT+AGG | + | chr3.2:2693355-2693374 | MS.gene058384:CDS | 35.0% | |
| AAAGAGAAAGAGGTGATTGA+AGG | - | chr3.2:2693830-2693849 | None:intergenic | 35.0% | |
| AAATGTTCCATGTAGCCATT+TGG | - | chr3.2:2695711-2695730 | None:intergenic | 35.0% | |
| AACACTTATAAGCTCTTTGG+TGG | + | chr3.2:2695564-2695583 | MS.gene058384:CDS | 35.0% | |
| AACTTCAAACTTAAAGGACC+CGG | - | chr3.2:2694463-2694482 | None:intergenic | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | + | chr3.2:2693314-2693333 | MS.gene058384:CDS | 35.0% | |
| AAGAGAGAAGAGAGAGAAAA+TGG | + | chr3.2:2694152-2694171 | MS.gene058384:intron | 35.0% | |
| ACATCATAATTCACACCAGA+TGG | + | chr3.2:2695486-2695505 | MS.gene058384:intron | 35.0% | |
| ATCTTCACCTTCATGAAGTT+TGG | - | chr3.2:2693314-2693333 | None:intergenic | 35.0% | |
| CACCCTTATCAATTACTTCA+AGG | - | chr3.2:2695626-2695645 | None:intergenic | 35.0% | |
| CTTGAAAATCTCATGCCAAA+TGG | + | chr3.2:2693892-2693911 | MS.gene058384:intron | 35.0% | |
| GAAGTAATTGATAAGGGTGA+TGG | + | chr3.2:2695627-2695646 | MS.gene058384:CDS | 35.0% | |
| GATACATTGAGACTAACCTA+AGG | + | chr3.2:2693546-2693565 | MS.gene058384:intron | 35.0% | |
| GTTTCACGTTTGTATCAGAT+AGG | - | chr3.2:2694767-2694786 | None:intergenic | 35.0% | |
| TGAGCATTATAGGGTCTTTA+AGG | + | chr3.2:2695596-2695615 | MS.gene058384:CDS | 35.0% | |
| TGCATAATATATGCAAGGTC+TGG | + | chr3.2:2694956-2694975 | MS.gene058384:intron | 35.0% | |
| TGGCCTAAAATTAACAACAC+TGG | + | chr3.2:2694809-2694828 | MS.gene058384:intron | 35.0% | |
| TGGTGTGAATTATGATGTCA+CGG | - | chr3.2:2695484-2695503 | None:intergenic | 35.0% | |
| ! | AATCAACTTTGGCTTAACAG+AGG | - | chr3.2:2694641-2694660 | None:intergenic | 35.0% |
| ! | AATGGCTACATGGAACATTT+TGG | + | chr3.2:2695711-2695730 | MS.gene058384:CDS | 35.0% |
| ! | GTTTGAAGTTTGTTTCGGAT+AGG | + | chr3.2:2694473-2694492 | MS.gene058384:intron | 35.0% |
| ! | TAAGCTTAACTCAGTTGGTA+TGG | + | chr3.2:2694929-2694948 | MS.gene058384:intron | 35.0% |
| ! | TCTCTTTCGACTCTTTTGAA+CGG | + | chr3.2:2693843-2693862 | MS.gene058384:intron | 35.0% |
| !! | CTTAACAGAGGTTGATAGAA+AGG | - | chr3.2:2694629-2694648 | None:intergenic | 35.0% |
| !! | GTTTCGAGTTTGTTTCAGAT+TGG | - | chr3.2:2694676-2694695 | None:intergenic | 35.0% |
| !! | TGATGATTTGGTTATCGATC+AGG | - | chr3.2:2693405-2693424 | None:intergenic | 35.0% |
| !! | TTTGGCATGAGATTTTCAAG+TGG | - | chr3.2:2693892-2693911 | None:intergenic | 35.0% |
| ACTCGTAAGCTTAACTCAGT+TGG | + | chr3.2:2694924-2694943 | MS.gene058384:intron | 40.0% | |
| ACTTCAAACTTAAAGGACCC+GGG | - | chr3.2:2694462-2694481 | None:intergenic | 40.0% | |
| AGAAAGAGGTGATTGAAGGA+GGG | - | chr3.2:2693826-2693845 | None:intergenic | 40.0% | |
| AGATTGGCATCACTCTGATT+CGG | + | chr3.2:2693330-2693349 | MS.gene058384:CDS | 40.0% | |
| ATTAAGGTCAAATACCTCCC+CGG | + | chr3.2:2694441-2694460 | MS.gene058384:intron | 40.0% | |
| CACCATACCAAACTTCATGA+AGG | + | chr3.2:2693304-2693323 | MS.gene058384:CDS | 40.0% | |
| CACCTTCATGAAGTTTGGTA+TGG | - | chr3.2:2693309-2693328 | None:intergenic | 40.0% | |
| GAAAATACTTGTGTGGACCA+AGG | + | chr3.2:2694078-2694097 | MS.gene058384:intron | 40.0% | |
| GAAACTTAAAGGACTCACGA+AGG | + | chr3.2:2694782-2694801 | MS.gene058384:intron | 40.0% | |
| GGTGTGAATTATGATGTCAC+GGG | - | chr3.2:2695483-2695502 | None:intergenic | 40.0% | |
| GTGGTCACAACCAAAGAAAT+GGG | + | chr3.2:2694116-2694135 | MS.gene058384:intron | 40.0% | |
| GTTGATGCTCATCTTGTCAA+AGG | + | chr3.2:2695750-2695769 | MS.gene058384:CDS | 40.0% | |
| TCTCTTCTCTCCCATTTCTT+TGG | - | chr3.2:2694129-2694148 | None:intergenic | 40.0% | |
| TGTGACCAAACTCAATTGTG+TGG | + | chr3.2:2694207-2694226 | MS.gene058384:intron | 40.0% | |
| TGTGGTCACAACCAAAGAAA+TGG | + | chr3.2:2694115-2694134 | MS.gene058384:intron | 40.0% | |
| TTTGGTTGTGACCACACAAT+GGG | - | chr3.2:2694111-2694130 | None:intergenic | 40.0% | |
| ! | ACAAGTCAAGCCTTATACCT+AGG | - | chr3.2:2694346-2694365 | None:intergenic | 40.0% |
| ! | GGTAAGCTCAGTACTGAAAT+TGG | + | chr3.2:2693202-2693221 | MS.gene058384:CDS | 40.0% |
| ! | TAGGTATAAGGCTTGACTTG+TGG | + | chr3.2:2694345-2694364 | MS.gene058384:intron | 40.0% |
| !! | AAAGGACTCACGAAGGTATT+TGG | + | chr3.2:2694789-2694808 | MS.gene058384:intron | 40.0% |
| !! | ACTCTGATTCGGTTAAACAC+TGG | + | chr3.2:2693341-2693360 | MS.gene058384:CDS | 40.0% |
| !! | GTTTCGAGTTTGTTTCGGAT+AGG | - | chr3.2:2694707-2694726 | None:intergenic | 40.0% |
| !! | TATAAGGCTTGACTTGTGGT+TGG | + | chr3.2:2694349-2694368 | MS.gene058384:intron | 40.0% |
| !!! | AGATTTTCAAGTGGAAGGCT+GGG | - | chr3.2:2693883-2693902 | None:intergenic | 40.0% |
| !!! | GCATGAGATTTTCAAGTGGA+AGG | - | chr3.2:2693888-2693907 | None:intergenic | 40.0% |
| CACACATCCACACACATCAA+CGG | + | chr3.2:2693653-2693672 | MS.gene058384:intron | 45.0% | |
| CAGGACCACACAATTGAGTT+TGG | - | chr3.2:2694215-2694234 | None:intergenic | 45.0% | |
| CATGTGTGTATCTTGCCATC+TGG | - | chr3.2:2695504-2695523 | None:intergenic | 45.0% | |
| CTAACCTAAGGACTCCACTT+TGG | + | chr3.2:2693558-2693577 | MS.gene058384:intron | 45.0% | |
| CTTCAAACTTAAAGGACCCG+GGG | - | chr3.2:2694461-2694480 | None:intergenic | 45.0% | |
| CTTTGGTTGTGACCACACAA+TGG | - | chr3.2:2694112-2694131 | None:intergenic | 45.0% | |
| GAGAAAGACTTGTGTGGATC+AGG | - | chr3.2:2694234-2694253 | None:intergenic | 45.0% | |
| GAGAAAGAGGTGATTGAAGG+AGG | - | chr3.2:2693827-2693846 | None:intergenic | 45.0% | |
| GAGGATATTGACCCTCCAAA+TGG | + | chr3.2:2695693-2695712 | MS.gene058384:CDS | 45.0% | |
| GTTCCATGTAGCCATTTGGA+GGG | - | chr3.2:2695707-2695726 | None:intergenic | 45.0% | |
| TGATGTGTGTGGATGTGTGT+GGG | - | chr3.2:2693652-2693671 | None:intergenic | 45.0% | |
| TGCCATTAATGGCACCAAAG+TGG | - | chr3.2:2693575-2693594 | None:intergenic | 45.0% | |
| TGTTCCATGTAGCCATTTGG+AGG | - | chr3.2:2695708-2695727 | None:intergenic | 45.0% | |
| TTAAGGTCAAATACCTCCCC+GGG | + | chr3.2:2694442-2694461 | MS.gene058384:intron | 45.0% | |
| TTGATGTGTGTGGATGTGTG+TGG | - | chr3.2:2693653-2693672 | None:intergenic | 45.0% | |
| TTGGTTGTGACCACACAATG+GGG | - | chr3.2:2694110-2694129 | None:intergenic | 45.0% | |
| !! | ATGCAATGGTATGGTGCCAT+TGG | - | chr3.2:2693598-2693617 | None:intergenic | 45.0% |
| !! | CTCCACTTTGGTGCCATTAA+TGG | + | chr3.2:2693570-2693589 | MS.gene058384:intron | 45.0% |
| !! | GATTGGTTCTATGGCACCAA+TGG | + | chr3.2:2693680-2693699 | MS.gene058384:intron | 45.0% |
| !! | TGTTAGTTTGCGGGACCATT+TGG | - | chr3.2:2693910-2693929 | None:intergenic | 45.0% |
| !!! | GAGATTTTCAAGTGGAAGGC+TGG | - | chr3.2:2693884-2693903 | None:intergenic | 45.0% |
| AAGGACCAAACCCCATTGTG+TGG | + | chr3.2:2694097-2694116 | MS.gene058384:intron | 50.0% | |
| ATGGCACTGCTGCTGCTAAA+TGG | + | chr3.2:2695646-2695665 | MS.gene058384:CDS | 50.0% | |
| GATGTGTGTGGATGTGTGTG+GGG | - | chr3.2:2693651-2693670 | None:intergenic | 50.0% | |
| GTGTGTGTGATGTGTGTGTG+TGG | - | chr3.2:2693626-2693645 | None:intergenic | 50.0% | |
| TGACCCTCCAAATGGCTACA+TGG | + | chr3.2:2695701-2695720 | MS.gene058384:CDS | 50.0% | |
| TGTGACCACACAATGGGGTT+TGG | - | chr3.2:2694105-2694124 | None:intergenic | 50.0% | |
| TGTGTGATGTGTGTGTGTGG+TGG | - | chr3.2:2693623-2693642 | None:intergenic | 50.0% | |
| ! | ACACAATGGGGTTTGGTCCT+TGG | - | chr3.2:2694098-2694117 | None:intergenic | 50.0% |
| ! | GTGGTGGAGATGCAATGGTA+TGG | - | chr3.2:2693607-2693626 | None:intergenic | 50.0% |
| ! | TGTGTGTGGTGGAGATGCAA+TGG | - | chr3.2:2693612-2693631 | None:intergenic | 50.0% |
| !! | AACGGCCAGGATTGGTTCTA+TGG | + | chr3.2:2693671-2693690 | MS.gene058384:intron | 50.0% |
| !! | ATGGGTAGCAATGGTGCCAT+TGG | - | chr3.2:2693699-2693718 | None:intergenic | 50.0% |
| !! | GGTGCCATTAATGGCACCAA+TGG | + | chr3.2:2693579-2693598 | MS.gene058384:intron | 50.0% |
| !! | GGTGCCATTGGTGCCATTAA+TGG | - | chr3.2:2693586-2693605 | None:intergenic | 50.0% |
| !! | TGGTGCCATAGAACCAATCC+TGG | - | chr3.2:2693679-2693698 | None:intergenic | 50.0% |
| ATCCACACACATCAACGGCC+AGG | + | chr3.2:2693658-2693677 | MS.gene058384:intron | 55.0% | |
| ATCCTGGCCGTTGATGTGTG+TGG | - | chr3.2:2693663-2693682 | None:intergenic | 55.0% | |
| CAAACTTAAAGGACCCGGGG+AGG | - | chr3.2:2694458-2694477 | None:intergenic | 55.0% | |
| CACACATCAACGGCCAGGAT+TGG | + | chr3.2:2693663-2693682 | MS.gene058384:intron | 55.0% | |
| GGCACCAAAGTGGAGTCCTT+AGG | - | chr3.2:2693565-2693584 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 2693190 | 2695791 | 2693190 | ID=MS.gene058384 |
| chr3.2 | mRNA | 2693190 | 2695791 | 2693190 | ID=MS.gene058384.t1;Parent=MS.gene058384 |
| chr3.2 | exon | 2693190 | 2693376 | 2693190 | ID=MS.gene058384.t1.exon1;Parent=MS.gene058384.t1 |
| chr3.2 | CDS | 2693190 | 2693376 | 2693190 | ID=cds.MS.gene058384.t1;Parent=MS.gene058384.t1 |
| chr3.2 | exon | 2695505 | 2695791 | 2695505 | ID=MS.gene058384.t1.exon2;Parent=MS.gene058384.t1 |
| chr3.2 | CDS | 2695505 | 2695791 | 2695505 | ID=cds.MS.gene058384.t1;Parent=MS.gene058384.t1 |
| Gene Sequence |
| Protein sequence |
