AlfalfaGEDB | MS.gene59957

M. sativa cultivar XinJiangDaYe / MS.gene59957

KEGG: -
GO: GO:0003674 GO:0003824 GO:0009055 GO:0016491
PFAM: PF02298.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59957.t1	XP_003609366.1	96.9	224	7	0	1	224	1	224	4.50E-74	287.7

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59957.t1	O82081	43.2	125	67	2	9	133	6	126	3.5e-22	106.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59957.t1	G7JE55	96.9	224	7	0	1	224	1	224	3.3e-74	287.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049281	MS.gene59957	0.841268	5.27E-58	-1.69E-46
MS.gene050363	MS.gene59957	0.876796	1.05E-68	-1.69E-46
MS.gene050381	MS.gene59957	0.831146	1.97E-55	-1.69E-46
MS.gene050883	MS.gene59957	0.816817	4.55E-52	-1.69E-46
MS.gene051127	MS.gene59957	0.819557	1.09E-52	-1.69E-46
MS.gene051946	MS.gene59957	0.811048	8.51E-51	-1.69E-46
MS.gene053549	MS.gene59957	0.814441	1.54E-51	-1.69E-46
MS.gene054959	MS.gene59957	0.818998	1.46E-52	-1.69E-46
MS.gene055551	MS.gene59957	0.813327	2.71E-51	-1.69E-46
MS.gene056310	MS.gene59957	0.834568	2.78E-56	-1.69E-46

Showing 1 to 10 of 20 entries

Previous1 2Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59957.t1	MTR_4g114870	96.875	224	7	0	1	224	1	224	2.12e-152	428
MS.gene59957.t1	MTR_4g114870	57.692	104	44	0	25	128	187	290	3.05e-36	131
MS.gene59957.t1	MTR_6g083240	57.225	173	60	4	1	171	1	161	3.71e-55	174
MS.gene59957.t1	MTR_5g006040	43.885	139	70	4	29	166	26	157	6.97e-33	117
MS.gene59957.t1	MTR_0334s0010	46.875	128	65	3	1	128	1	125	7.43e-33	118
MS.gene59957.t1	MTR_4g067200	42.308	130	72	3	1	128	1	129	4.95e-32	115
MS.gene59957.t1	MTR_4g066110	42.308	130	72	3	1	128	1	129	4.95e-32	115
MS.gene59957.t1	MTR_3g099570	44.444	117	60	2	27	143	24	135	5.56e-28	105
MS.gene59957.t1	MTR_3g099580	49.020	102	47	2	27	128	24	120	2.84e-27	103
MS.gene59957.t1	MTR_1g104800	41.096	146	76	3	31	176	27	162	8.21e-27	102

Showing 1 to 10 of 66 entries

Previous1 2 3 4 5 6 7Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59957.t1	AT2G32300	41.497	147	82	2	9	155	6	148	5.38e-32	117
MS.gene59957.t1	AT2G32300	41.497	147	82	2	9	155	36	178	1.71e-31	117
MS.gene59957.t1	AT2G31050	39.655	174	96	2	10	177	10	180	4.60e-31	113
MS.gene59957.t1	AT5G20230	46.721	122	63	2	31	151	27	147	8.03e-30	110
MS.gene59957.t1	AT3G17675	51.923	104	42	3	27	128	30	127	4.84e-29	106
MS.gene59957.t1	AT2G26720	40.426	141	81	1	1	141	1	138	5.28e-29	108
MS.gene59957.t1	AT2G25060	38.272	162	81	4	13	167	14	163	6.32e-25	97.1
MS.gene59957.t1	AT5G26330	44.231	104	56	1	31	134	26	127	2.08e-23	93.2
MS.gene59957.t1	AT4G28365	31.053	190	113	6	1	188	5	178	7.66e-22	89.4
MS.gene59957.t1	AT3G20570	33.690	187	120	4	1	186	1	184	1.16e-21	89.0

Showing 1 to 10 of 38 entries

Previous1 2 3 4Next

Find 66 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCACCGGCACCAACCA+AGG	0.541334	8.3:-12543428	MS.gene59957:CDS
AACATTAAGGTTCTTTGCCA+TGG	0.467663	8.3:+12543980	None:intergenic
AACTTCATTTGTGCCGTTCC+AGG	0.347262	8.3:-12543574	MS.gene59957:CDS
AAGCAGTAGTAGATGGTGCT+GGG	0.527160	8.3:+12543392	None:intergenic
ACAGCTTACGATAGTTGCAA+TGG	0.598738	8.3:-12543664	MS.gene59957:CDS
ACAGGTCCAGTAGCAGGAGC+TGG	0.516512	8.3:+12543355	None:intergenic
ACCGTGACATTGAACGAAAC+AGG	0.440151	8.3:-12543604	MS.gene59957:CDS
AGAATGAAGCACCGTTGGTT+GGG	0.451694	8.3:+12543862	None:intergenic
AGATGGAATGGTCCAGCCAA+TGG	0.572806	8.3:+12543312	None:intergenic
AGCAGCACCGTTAGATGGAA+TGG	0.523720	8.3:+12543300	None:intergenic

Showing 1 to 10 of 66 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTTGCACAAACAAGACATG+TGG	-	chr8.3:12543316-12543335	MS.gene59957:CDS	35.0%
TGCTTCATTCTATACCAACT+GGG	-	chr8.3:12543376-12543395	MS.gene59957:CDS	35.0%
TTGTTTGTGCAAATGATCCA+TGG	+	chr8.3:12543310-12543329	None:intergenic	35.0%
ACAGCTTACGATAGTTGCAA+TGG	-	chr8.3:12543562-12543581	MS.gene59957:CDS	40.0%
GCAGTGTTCAATTATGCAAG+TGG	-	chr8.3:12543511-12543530	MS.gene59957:CDS	40.0%
GTGCTTCATTCTATACCAAC+TGG	-	chr8.3:12543375-12543394	MS.gene59957:CDS	40.0%
TCCAACAAAACCTTCACTGT+AGG	-	chr8.3:12543401-12543420	MS.gene59957:CDS	40.0%
TCCTGTTTCGTTCAATGTCA+CGG	+	chr8.3:12543626-12543645	None:intergenic	40.0%
TCTCGCAAGTCTTTCAAAGT+TGG	-	chr8.3:12543967-12543986	MS.gene59957:CDS	40.0%
TGGACAACATGATGTTGCTA+AGG	-	chr8.3:12543531-12543550	MS.gene59957:CDS	40.0%

Showing 1 to 10 of 74 entries

Previous1 2 3 4 5…8Next

Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	12543248	12544000	12543248	ID=MS.gene59957
chr8.3	mRNA	12543248	12544000	12543248	ID=MS.gene59957.t1;Parent=MS.gene59957
chr8.3	exon	12543814	12544000	12543814	ID=MS.gene59957.t1.exon1;Parent=MS.gene59957.t1
chr8.3	CDS	12543814	12544000	12543814	ID=cds.MS.gene59957.t1;Parent=MS.gene59957.t1
chr8.3	exon	12543248	12543733	12543248	ID=MS.gene59957.t1.exon2;Parent=MS.gene59957.t1
chr8.3	CDS	12543248	12543733	12543248	ID=cds.MS.gene59957.t1;Parent=MS.gene59957.t1

Gene Sequence

>MS.gene59957

ATGGCAAAGAACCTTAATGTTCTTGTTTTTGTTCTACTTGCAGTTGCTGCAAACCTGTTCCATGGATCATTTGCACAAACAAGACATGTGGTTGGTGATACCACAGGTTGGACTATCCCAACCAACGGTGCTTCATTCTATACCAACTGGGCTTCCAACAAAACCTTCACTGTAGGCGACACTCTCGGTAAGAAACAATATATTTCAGCCCTTGTCATTTTGATTCGTTTATATGAGAATTGTTTTAACGTAAACATGATTTTGCAGTGTTCAATTATGCAAGTGGACAACATGATGTTGCTAAGGTAACAAAAACAGCTTACGATAGTTGCAATGGAGCAAACACACTTTTCACCTTAACAAACAGTCCAGCTACCGTGACATTGAACGAAACAGGACAACAAAACTTCATTTGTGCCGTTCCAGGACATTGTTCAGCTGGACAAAAACTTTCAATTAACGTTGTTAAAGCTTCTACTTCACCTGTTTCTGCTCCAACTCCAAGTGCTTCTCCACCTAAGGCTACTCCAGCTCCTACCCCTGTTCCAGCAAAAGCACCGGCACCAACCAAGGCCGCTACACCTGCCCCAGCACCATCTACTACTGCTTCACCAACACCTGCTCCAGCTCCTGCTACTGGACCTGTTACTTACACCGTCGGTGACACCATTGGCTGGACCATTCCATCTAACGGTGCTGCTGCTTATACAACCTGGGCTTCTCGCAAGTCTTTCAAAGTTGGAGACATCCTTG

Protein sequence

>MS.gene59957.t1

MAKNLNVLVFVLLAVAANLFHGSFAQTRHVVGDTTGWTIPTNGASFYTNWASNKTFTVGDTLVFNYASGQHDVAKVTKTAYDSCNGANTLFTLTNSPATVTLNETGQQNFICAVPGHCSAGQKLSINVVKASTSPVSAPTPSASPPKATPAPTPVPAKAPAPTKAATPAPAPSTTASPTPAPAPATGPVTYTVGDTIGWTIPSNGAAAYTTWASRKSFKVGDIL