Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61966.t1 | XP_003616526.1 | 96.9 | 413 | 11 | 1 | 1 | 411 | 1 | 413 | 3.10E-230 | 807.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61966.t1 | Q9LZN0 | 69.3 | 352 | 100 | 3 | 63 | 411 | 52 | 398 | 2.9e-144 | 513.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61966.t1 | F6LPU5 | 96.9 | 413 | 11 | 1 | 1 | 411 | 1 | 413 | 2.3e-230 | 807.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene61966 | 0.820337 | 7.23E-53 | -1.69E-46 |
| MS.gene050297 | MS.gene61966 | 0.813321 | 2.72E-51 | -1.69E-46 |
| MS.gene051955 | MS.gene61966 | 0.829555 | 4.82E-55 | -1.69E-46 |
| MS.gene052308 | MS.gene61966 | 0.813533 | 2.44E-51 | -1.69E-46 |
| MS.gene052367 | MS.gene61966 | 0.831313 | 1.79E-55 | -1.69E-46 |
| MS.gene053416 | MS.gene61966 | 0.815646 | 8.31E-52 | -1.69E-46 |
| MS.gene053417 | MS.gene61966 | 0.814959 | 1.18E-51 | -1.69E-46 |
| MS.gene054593 | MS.gene61966 | 0.803526 | 3.34E-49 | -1.69E-46 |
| MS.gene055308 | MS.gene61966 | 0.809906 | 1.50E-50 | -1.69E-46 |
| MS.gene055578 | MS.gene61966 | 0.826839 | 2.18E-54 | -1.69E-46 |
| MS.gene055579 | MS.gene61966 | 0.806127 | 9.57E-50 | -1.69E-46 |
| MS.gene056041 | MS.gene61966 | 0.859738 | 3.36E-63 | -1.69E-46 |
| MS.gene056042 | MS.gene61966 | 0.80713 | 5.87E-50 | -1.69E-46 |
| MS.gene05640 | MS.gene61966 | 0.806477 | 8.07E-50 | -1.69E-46 |
| MS.gene056526 | MS.gene61966 | 0.829066 | 6.34E-55 | -1.69E-46 |
| MS.gene056528 | MS.gene61966 | 0.8032 | 3.90E-49 | -1.69E-46 |
| MS.gene057458 | MS.gene61966 | 0.815555 | 8.71E-52 | -1.69E-46 |
| MS.gene058853 | MS.gene61966 | 0.81751 | 3.18E-52 | -1.69E-46 |
| MS.gene059553 | MS.gene61966 | 0.822205 | 2.68E-53 | -1.69E-46 |
| MS.gene060473 | MS.gene61966 | 0.880571 | 4.92E-70 | -1.69E-46 |
| MS.gene060565 | MS.gene61966 | 0.885921 | 5.36E-72 | -1.69E-46 |
| MS.gene06057 | MS.gene61966 | 0.800739 | 1.25E-48 | -1.69E-46 |
| MS.gene06093 | MS.gene61966 | 0.816787 | 4.62E-52 | -1.69E-46 |
| MS.gene061099 | MS.gene61966 | 0.814789 | 1.29E-51 | -1.69E-46 |
| MS.gene061260 | MS.gene61966 | 0.852277 | 5.13E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61966.t1 | MTR_5g081410 | 96.852 | 413 | 11 | 1 | 1 | 411 | 1 | 413 | 0.0 | 829 |
| MS.gene61966.t1 | MTR_3g069590 | 69.794 | 437 | 100 | 6 | 1 | 411 | 1 | 431 | 0.0 | 595 |
| MS.gene61966.t1 | MTR_3g069590 | 69.794 | 437 | 100 | 6 | 1 | 411 | 1 | 431 | 0.0 | 592 |
| MS.gene61966.t1 | MTR_7g065220 | 64.499 | 369 | 130 | 1 | 44 | 411 | 148 | 516 | 7.64e-176 | 506 |
| MS.gene61966.t1 | MTR_4g019770 | 61.765 | 374 | 135 | 2 | 42 | 411 | 54 | 423 | 1.39e-164 | 473 |
| MS.gene61966.t1 | MTR_4g075640 | 59.697 | 330 | 131 | 1 | 82 | 411 | 89 | 416 | 1.59e-139 | 410 |
| MS.gene61966.t1 | MTR_8g030850 | 54.810 | 343 | 134 | 4 | 82 | 411 | 99 | 433 | 3.10e-122 | 363 |
| MS.gene61966.t1 | MTR_7g077690 | 50.000 | 386 | 129 | 4 | 82 | 411 | 115 | 492 | 1.10e-114 | 345 |
| MS.gene61966.t1 | MTR_6g087700 | 48.943 | 331 | 149 | 4 | 82 | 411 | 98 | 409 | 8.50e-108 | 328 |
| MS.gene61966.t1 | MTR_2g101830 | 47.432 | 331 | 155 | 4 | 82 | 411 | 88 | 400 | 2.99e-105 | 321 |
| MS.gene61966.t1 | MTR_5g025960 | 45.152 | 330 | 171 | 2 | 82 | 411 | 120 | 439 | 2.11e-93 | 291 |
| MS.gene61966.t1 | MTR_4g013165 | 45.552 | 281 | 132 | 4 | 131 | 410 | 1 | 261 | 2.57e-82 | 258 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61966.t1 | AT5G02010 | 69.318 | 352 | 100 | 3 | 63 | 411 | 52 | 398 | 0.0 | 523 |
| MS.gene61966.t1 | AT5G05940 | 65.147 | 373 | 127 | 2 | 42 | 411 | 63 | 435 | 2.94e-177 | 503 |
| MS.gene61966.t1 | AT5G05940 | 65.147 | 373 | 127 | 2 | 42 | 411 | 63 | 435 | 1.03e-175 | 504 |
| MS.gene61966.t1 | AT3G55660 | 59.249 | 373 | 143 | 3 | 42 | 411 | 71 | 437 | 4.23e-154 | 442 |
| MS.gene61966.t1 | AT3G55660 | 59.249 | 373 | 143 | 3 | 42 | 411 | 71 | 437 | 8.96e-153 | 444 |
| MS.gene61966.t1 | AT4G38430 | 57.637 | 347 | 139 | 4 | 67 | 411 | 80 | 420 | 1.39e-137 | 405 |
| MS.gene61966.t1 | AT4G00460 | 55.786 | 337 | 134 | 5 | 82 | 411 | 106 | 434 | 6.17e-124 | 367 |
| MS.gene61966.t1 | AT4G00460 | 55.786 | 337 | 134 | 5 | 82 | 411 | 106 | 434 | 6.17e-124 | 367 |
| MS.gene61966.t1 | AT1G01700 | 55.786 | 337 | 134 | 5 | 82 | 411 | 118 | 446 | 9.86e-122 | 362 |
| MS.gene61966.t1 | AT1G01700 | 54.651 | 344 | 134 | 6 | 82 | 411 | 118 | 453 | 1.51e-119 | 355 |
| MS.gene61966.t1 | AT1G01700 | 51.226 | 367 | 134 | 6 | 82 | 411 | 118 | 476 | 2.95e-115 | 346 |
| MS.gene61966.t1 | AT3G24620 | 51.057 | 331 | 142 | 4 | 82 | 411 | 87 | 398 | 7.47e-115 | 345 |
| MS.gene61966.t1 | AT2G45890 | 51.176 | 340 | 145 | 6 | 82 | 411 | 95 | 423 | 3.20e-110 | 332 |
| MS.gene61966.t1 | AT4G13240 | 48.640 | 331 | 150 | 4 | 82 | 411 | 76 | 387 | 3.59e-109 | 331 |
| MS.gene61966.t1 | AT1G79860 | 47.734 | 331 | 152 | 5 | 82 | 411 | 94 | 404 | 2.69e-105 | 321 |
| MS.gene61966.t1 | AT1G52240 | 49.547 | 331 | 144 | 5 | 82 | 411 | 106 | 414 | 1.45e-104 | 320 |
| MS.gene61966.t1 | AT3G16130 | 48.225 | 338 | 157 | 5 | 75 | 411 | 85 | 405 | 2.39e-102 | 314 |
| MS.gene61966.t1 | AT4G00460 | 51.987 | 302 | 130 | 5 | 117 | 411 | 8 | 301 | 3.52e-102 | 307 |
| MS.gene61966.t1 | AT5G19560 | 45.921 | 331 | 161 | 4 | 82 | 411 | 65 | 378 | 4.48e-100 | 303 |
| MS.gene61966.t1 | AT5G19560 | 45.921 | 331 | 161 | 4 | 82 | 411 | 46 | 359 | 4.52e-99 | 304 |
| MS.gene61966.t1 | AT5G19560 | 45.921 | 331 | 161 | 4 | 82 | 411 | 46 | 359 | 4.52e-99 | 304 |
| MS.gene61966.t1 | AT5G19560 | 45.921 | 331 | 161 | 4 | 82 | 411 | 65 | 378 | 8.20e-99 | 304 |
| MS.gene61966.t1 | AT1G31650 | 41.791 | 335 | 176 | 3 | 82 | 411 | 110 | 430 | 9.30e-86 | 271 |
| MS.gene61966.t1 | AT1G31650 | 41.791 | 335 | 176 | 3 | 82 | 411 | 138 | 458 | 3.62e-85 | 271 |
| MS.gene61966.t1 | AT4G00460 | 58.333 | 228 | 90 | 3 | 82 | 306 | 106 | 331 | 7.17e-84 | 260 |
| MS.gene61966.t1 | AT1G01700 | 60.280 | 214 | 82 | 2 | 82 | 292 | 118 | 331 | 1.18e-81 | 255 |
| MS.gene61966.t1 | AT1G01700 | 60.280 | 214 | 82 | 2 | 82 | 292 | 118 | 331 | 1.18e-81 | 255 |
| MS.gene61966.t1 | AT5G19560 | 42.149 | 242 | 122 | 4 | 171 | 411 | 5 | 229 | 4.05e-61 | 202 |
Find 84 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATGGCTGCTTTCAGTATT+TGG | 0.134248 | 5.3:+66014147 | None:intergenic |
| GGAAGTTCCCGAGTCGTATT+TGG | 0.241485 | 5.3:-66014096 | MS.gene61966:CDS |
| GGTCTTCTTCATTTCCTATT+AGG | 0.245693 | 5.3:-66015700 | MS.gene61966:CDS |
| CAACATGTAGGAACTGTATT+TGG | 0.265120 | 5.3:-66015182 | MS.gene61966:intron |
| TTCATCTGATTTGCTACATT+TGG | 0.286431 | 5.3:+66015664 | None:intergenic |
| TTGTTGAGTTAATGCCTTCT+TGG | 0.293497 | 5.3:-66015070 | MS.gene61966:CDS |
| GCAGGAGGCACACGGGGTAC+TGG | 0.311400 | 5.3:+66014224 | None:intergenic |
| GAACTGTATTTGGACAATTA+TGG | 0.318046 | 5.3:-66015172 | MS.gene61966:CDS |
| GTTGCACTGCTATGGAGTTT+TGG | 0.323799 | 5.3:-66014337 | MS.gene61966:CDS |
| GACATAGTGCCCTTCCTAAT+AGG | 0.352007 | 5.3:+66015686 | None:intergenic |
| TTCATTGAAGCAGCGCTTCC+CGG | 0.357161 | 5.3:-66013585 | MS.gene61966:CDS |
| TTATCATCAACTTGAGAAAC+AGG | 0.378270 | 5.3:+66015629 | None:intergenic |
| AGAAAAGTGGCAGAGAGAAA+TGG | 0.381993 | 5.3:-66015120 | MS.gene61966:CDS |
| CATCTGGTGCCACAATTCCT+TGG | 0.414903 | 5.3:+66014306 | None:intergenic |
| CTGATTTCTCTTGCGAAAAG+AGG | 0.416366 | 5.3:+66014271 | None:intergenic |
| CTCAAGTGCAACATGCTCAT+TGG | 0.420115 | 5.3:+66013781 | None:intergenic |
| GGACATTGTGAAGGACTTCA+TGG | 0.423504 | 5.3:-66013660 | MS.gene61966:CDS |
| CATAAATTGCGGCTTCTAAA+CGG | 0.424426 | 5.3:+66013750 | None:intergenic |
| TAGAAGCCGCAATTTATGTA+TGG | 0.430551 | 5.3:-66013745 | MS.gene61966:CDS |
| GTGAAGGACTTCATGGTTGA+TGG | 0.439958 | 5.3:-66013653 | MS.gene61966:CDS |
| TTTAGATAGTTGCACTGCTA+TGG | 0.442885 | 5.3:-66014345 | MS.gene61966:CDS |
| TCAGAATGGAAGAACGTGCT+TGG | 0.444622 | 5.3:-66013876 | MS.gene61966:intron |
| CAGGAGGCACACGGGGTACT+GGG | 0.446468 | 5.3:+66014225 | None:intergenic |
| TCAGGATATGTTTGCCAAGA+AGG | 0.453625 | 5.3:+66015056 | None:intergenic |
| CAGAATGGAAGAACGTGCTT+GGG | 0.465023 | 5.3:-66013875 | MS.gene61966:CDS |
| GAGGCTGATCCATCTGCATC+TGG | 0.467719 | 5.3:+66014290 | None:intergenic |
| AGCATGAAACCTTGTTGCAT+TGG | 0.469347 | 5.3:+66013528 | None:intergenic |
| GCAAGCACTCTTGAGAGAAC+TGG | 0.473659 | 5.3:+66013822 | None:intergenic |
| TCATTGAAGCAGCGCTTCCC+GGG | 0.475313 | 5.3:-66013584 | MS.gene61966:CDS |
| CTGCTTGGTGAAGATATGTC+AGG | 0.475560 | 5.3:-66015392 | MS.gene61966:CDS |
| ATCAGGAGGGGATATGATGA+AGG | 0.476878 | 5.3:-66015432 | MS.gene61966:intron |
| CAGCATTGCTTTAGATGACA+TGG | 0.484744 | 5.3:-66014117 | MS.gene61966:CDS |
| TTCTTCATTTCCTATTAGGA+AGG | 0.485913 | 5.3:-66015696 | MS.gene61966:CDS |
| AATGGGTCTTGTAGTTCCAC+TGG | 0.490578 | 5.3:-66015767 | MS.gene61966:CDS |
| GTTCGACTACAAAGTCATCC+TGG | 0.490964 | 5.3:-66013682 | MS.gene61966:CDS |
| GGTGAAGATATGTCAGGGTC+TGG | 0.491025 | 5.3:-66015386 | MS.gene61966:CDS |
| GTACCCCGTGTGCCTCCTGC+CGG | 0.499229 | 5.3:-66014221 | MS.gene61966:CDS |
| TTGTCGAGTTTACGTAGAGC+TGG | 0.504038 | 5.3:+66014475 | None:intergenic |
| GTATTTGGATACCCTTCCTA+AGG | 0.508742 | 5.3:-66014081 | MS.gene61966:intron |
| GATATGTCAGGGTCTGGAAA+AGG | 0.513629 | 5.3:-66015380 | MS.gene61966:CDS |
| ACCTCTAGCTTACTACCATC+AGG | 0.519299 | 5.3:+66015038 | None:intergenic |
| TCTTGAGTTCTCACTGAGAC+CGG | 0.521027 | 5.3:+66014202 | None:intergenic |
| ATGTAGTTTGACTTAAACCC+GGG | 0.524605 | 5.3:+66013567 | None:intergenic |
| TGGAAAATCAAACCTTAGGA+AGG | 0.525020 | 5.3:+66014069 | None:intergenic |
| GAGTTCTCACTGAGACCGGC+AGG | 0.534877 | 5.3:+66014206 | None:intergenic |
| ATCAGCGGCAAGAGGAGAAG+TGG | 0.535708 | 5.3:-66014253 | MS.gene61966:CDS |
| ATGGATTGGCTTCTTTGTGT+TGG | 0.544302 | 5.3:-66015101 | MS.gene61966:CDS |
| TCTTCATTTCCTATTAGGAA+GGG | 0.555428 | 5.3:-66015695 | MS.gene61966:CDS |
| ACTTTGTAGTCGAACGGCTA+GGG | 0.555981 | 5.3:+66013690 | None:intergenic |
| GAAGTCCTTCACAATGTCCC+AGG | 0.565686 | 5.3:+66013664 | None:intergenic |
| GACTTTGTAGTCGAACGGCT+AGG | 0.567248 | 5.3:+66013689 | None:intergenic |
| AAAAGGAGTTAGCACTGCAT+TGG | 0.568507 | 5.3:-66015363 | MS.gene61966:CDS |
| AGTGGCAGAGAGAAATGGAT+TGG | 0.572062 | 5.3:-66015115 | MS.gene61966:CDS |
| GGGTTTAAGTCAAACTACAT+TGG | 0.572158 | 5.3:-66013564 | MS.gene61966:CDS |
| GTGGTTTAGAGTGAGATCTC+TGG | 0.574600 | 5.3:+66013720 | None:intergenic |
| TGAGACCGGCAGGAGGCACA+CGG | 0.577679 | 5.3:+66014216 | None:intergenic |
| CATGTGAAAAGAAAGAAAAG+TGG | 0.581474 | 5.3:-66015133 | MS.gene61966:CDS |
| AGGTTTGCGAAGTTACTGCT+TGG | 0.585242 | 5.3:-66015407 | MS.gene61966:CDS |
| TTCGACTACAAAGTCATCCT+GGG | 0.585548 | 5.3:-66013681 | MS.gene61966:CDS |
| GAGACCGGCAGGAGGCACAC+GGG | 0.597490 | 5.3:+66014217 | None:intergenic |
| CAAGAGAAATCAGCGGCAAG+AGG | 0.598859 | 5.3:-66014261 | MS.gene61966:CDS |
| AATGCTATTACTAATTTGTG+TGG | 0.601531 | 5.3:-66015332 | MS.gene61966:intron |
| GTATGTTGACCAAGGAATTG+TGG | 0.604214 | 5.3:-66014315 | MS.gene61966:CDS |
| GAGGGGATATGATGAAGGAA+AGG | 0.608465 | 5.3:-66015427 | MS.gene61966:CDS |
| AATGTAGTTTGACTTAAACC+CGG | 0.610470 | 5.3:+66013566 | None:intergenic |
| GTCATCCTGGGACATTGTGA+AGG | 0.614434 | 5.3:-66013669 | MS.gene61966:CDS |
| TGCTTGGTGAAGATATGTCA+GGG | 0.618748 | 5.3:-66015391 | MS.gene61966:CDS |
| AGCAATGCTGTTGATAGACA+TGG | 0.626027 | 5.3:+66014130 | None:intergenic |
| TCCTGATGGTAGTAAGCTAG+AGG | 0.628089 | 5.3:-66015039 | MS.gene61966:intron |
| TCTTGGCAAACATATCCTGA+TGG | 0.629177 | 5.3:-66015053 | MS.gene61966:CDS |
| AGGATGACTTTGTAGTCGAA+CGG | 0.629366 | 5.3:+66013684 | None:intergenic |
| AAGGGTATCCAAATACGACT+CGG | 0.630421 | 5.3:+66014088 | None:intergenic |
| GGAAAATCAAACCTTAGGAA+GGG | 0.632917 | 5.3:+66014070 | None:intergenic |
| TTGCAAGATCCAATGCAACA+AGG | 0.637712 | 5.3:-66013537 | None:intergenic |
| ATCTGAGCAACACGATCCAG+TGG | 0.638385 | 5.3:+66015751 | None:intergenic |
| AGGGTATCCAAATACGACTC+GGG | 0.638687 | 5.3:+66014089 | None:intergenic |
| AGACCGGCAGGAGGCACACG+GGG | 0.642385 | 5.3:+66014218 | None:intergenic |
| GTCGAACGGCTAGGGTAGAG+TGG | 0.643760 | 5.3:+66013698 | None:intergenic |
| ATTGTGGCACCAGATGCAGA+TGG | 0.645033 | 5.3:-66014299 | MS.gene61966:CDS |
| AGCGGCAAGAGGAGAAGTGG+TGG | 0.645482 | 5.3:-66014250 | MS.gene61966:CDS |
| TTCTCACTGAGACCGGCAGG+AGG | 0.665518 | 5.3:+66014209 | None:intergenic |
| GCACTCTTGAGAGAACTGGT+CGG | 0.681945 | 5.3:+66013826 | None:intergenic |
| GAACGGCTAGGGTAGAGTGG+TGG | 0.690009 | 5.3:+66013701 | None:intergenic |
| CTGGTGCCATACATAAATTG+CGG | 0.695871 | 5.3:+66013739 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAACAAAGATTAATAAAT+AGG | - | chr5.3:66014382-66014401 | MS.gene61966:intron | 15.0% |
| !!! | AATTTTCAAAAGAGAAAAAA+TGG | - | chr5.3:66013565-66013584 | MS.gene61966:CDS | 15.0% |
| !!! | ATTTTCAAAAGAGAAAAAAT+GGG | - | chr5.3:66013566-66013585 | MS.gene61966:CDS | 15.0% |
| !!! | TTGTAATAAATATTGATAGT+AGG | - | chr5.3:66014052-66014071 | MS.gene61966:intron | 15.0% |
| !! | ACATTAAACTCACATATATA+AGG | + | chr5.3:66014358-66014377 | None:intergenic | 20.0% |
| !! | ATTGTTGATACTATATAATC+TGG | - | chr5.3:66015372-66015391 | MS.gene61966:CDS | 20.0% |
| !! | TACAAAGTCAAAACATAATA+AGG | + | chr5.3:66013896-66013915 | None:intergenic | 20.0% |
| !!! | ATTTTTTATTCTTCCAATGT+AGG | - | chr5.3:66014919-66014938 | MS.gene61966:intron | 20.0% |
| !!! | TTATTATGTTTTGACTTTGT+AGG | - | chr5.3:66013895-66013914 | MS.gene61966:intron | 20.0% |
| !!! | TTCTTACAATTTGTTCAATT+GGG | - | chr5.3:66014137-66014156 | MS.gene61966:CDS | 20.0% |
| !!! | TTTCTTACAATTTGTTCAAT+TGG | - | chr5.3:66014136-66014155 | MS.gene61966:CDS | 20.0% |
| ! | AACAAGCAAAAATAGCAAAA+GGG | - | chr5.3:66013629-66013648 | MS.gene61966:CDS | 25.0% |
| ! | CTAAAATTTCCTGTTACATA+GGG | + | chr5.3:66014990-66015009 | None:intergenic | 25.0% |
| ! | TTATGTTCTGTTTAGTGTTT+AGG | - | chr5.3:66013799-66013818 | MS.gene61966:CDS | 25.0% |
| ! | TTCGTTTGATTGAAATAGAA+CGG | - | chr5.3:66014467-66014486 | MS.gene61966:CDS | 25.0% |
| ! | TTGATAAAAATGTCTGATCT+TGG | + | chr5.3:66014851-66014870 | None:intergenic | 25.0% |
| !! | AATGCTATTACTAATTTGTG+TGG | - | chr5.3:66014018-66014037 | MS.gene61966:intron | 25.0% |
| !! | TATTACTAATTTGTGTGGTA+TGG | - | chr5.3:66014023-66014042 | MS.gene61966:intron | 25.0% |
| !! | TCTAAAATTTCCTGTTACAT+AGG | + | chr5.3:66014991-66015010 | None:intergenic | 25.0% |
| !!! | CAAATTTCGAGTTTTCAATT+TGG | + | chr5.3:66014680-66014699 | None:intergenic | 25.0% |
| !!! | GTTAACTTTTTCTTGTGTTA+TGG | - | chr5.3:66014097-66014116 | MS.gene61966:CDS | 25.0% |
| AAAGTTCAAACAACGTATCA+TGG | + | chr5.3:66015455-66015474 | None:intergenic | 30.0% | |
| AACGGTCTATATTTCATGTT+TGG | - | chr5.3:66014485-66014504 | MS.gene61966:CDS | 30.0% | |
| AAGTTCAAACAACGTATCAT+GGG | + | chr5.3:66015454-66015473 | None:intergenic | 30.0% | |
| AATCATACAAAGTAGAGAGT+AGG | + | chr5.3:66014409-66014428 | None:intergenic | 30.0% | |
| ACACTAAACAGAACATAACA+AGG | + | chr5.3:66013797-66013816 | None:intergenic | 30.0% | |
| ACTCTCTACTTTGTATGATT+AGG | - | chr5.3:66014409-66014428 | MS.gene61966:intron | 30.0% | |
| AGTATCAGCTCAAAAATTTC+TGG | - | chr5.3:66013754-66013773 | MS.gene61966:CDS | 30.0% | |
| ATCATACAAAGTAGAGAGTA+GGG | + | chr5.3:66014408-66014427 | None:intergenic | 30.0% | |
| CATGTGAAAAGAAAGAAAAG+TGG | - | chr5.3:66014217-66014236 | MS.gene61966:CDS | 30.0% | |
| CTCTCTACTTTGTATGATTA+GGG | - | chr5.3:66014410-66014429 | MS.gene61966:intron | 30.0% | |
| CTGAACAGCTAAATAGAAAT+TGG | - | chr5.3:66014633-66014652 | MS.gene61966:intron | 30.0% | |
| GAACAAGCAAAAATAGCAAA+AGG | - | chr5.3:66013628-66013647 | MS.gene61966:CDS | 30.0% | |
| GAACTGTATTTGGACAATTA+TGG | - | chr5.3:66014178-66014197 | MS.gene61966:CDS | 30.0% | |
| TATGTGGAAAATCAAACCTT+AGG | + | chr5.3:66015288-66015307 | None:intergenic | 30.0% | |
| TCTTCATTTCCTATTAGGAA+GGG | - | chr5.3:66013655-66013674 | MS.gene61966:CDS | 30.0% | |
| TGATACATGATAGAACGTTA+TGG | - | chr5.3:66015404-66015423 | MS.gene61966:CDS | 30.0% | |
| TTATCATCAACTTGAGAAAC+AGG | + | chr5.3:66013724-66013743 | None:intergenic | 30.0% | |
| TTCTTCATTTCCTATTAGGA+AGG | - | chr5.3:66013654-66013673 | MS.gene61966:CDS | 30.0% | |
| TTGATCAAAATCAGATGACT+CGG | - | chr5.3:66014535-66014554 | MS.gene61966:intron | 30.0% | |
| ! | AAGATCTCAATCGATTTATG+TGG | + | chr5.3:66015304-66015323 | None:intergenic | 30.0% |
| ! | AATGTAGTTTGACTTAAACC+CGG | + | chr5.3:66015787-66015806 | None:intergenic | 30.0% |
| ! | CACTTTTCTTTCTTTTCACA+TGG | + | chr5.3:66014219-66014238 | None:intergenic | 30.0% |
| !! | AGAAATTTTTGAGCTGATAC+TGG | + | chr5.3:66013755-66013774 | None:intergenic | 30.0% |
| !! | TTCATCTGATTTGCTACATT+TGG | + | chr5.3:66013689-66013708 | None:intergenic | 30.0% |
| ACCAATGAAAATTTGACAGC+AGG | + | chr5.3:66014589-66014608 | None:intergenic | 35.0% | |
| AGGTAGTAGTAGTACTAGTA+AGG | + | chr5.3:66014734-66014753 | None:intergenic | 35.0% | |
| ATTTAGCTGTTCAGATAGAC+TGG | + | chr5.3:66014627-66014646 | None:intergenic | 35.0% | |
| CAACATGTAGGAACTGTATT+TGG | - | chr5.3:66014168-66014187 | MS.gene61966:CDS | 35.0% | |
| CATAAATTGCGGCTTCTAAA+CGG | + | chr5.3:66015603-66015622 | None:intergenic | 35.0% | |
| CCCTACTAAATATATGCACA+CGG | + | chr5.3:66014772-66014791 | None:intergenic | 35.0% | |
| CCGTGTGCATATATTTAGTA+GGG | - | chr5.3:66014769-66014788 | MS.gene61966:intron | 35.0% | |
| CGTTGTTTGAACTTTCAGAA+TGG | - | chr5.3:66015460-66015479 | MS.gene61966:intron | 35.0% | |
| GGAAAATCAAACCTTAGGAA+GGG | + | chr5.3:66015283-66015302 | None:intergenic | 35.0% | |
| GGGTTTAAGTCAAACTACAT+TGG | - | chr5.3:66015786-66015805 | MS.gene61966:CDS | 35.0% | |
| GGTAGTAGTAGTACTAGTAA+GGG | + | chr5.3:66014733-66014752 | None:intergenic | 35.0% | |
| GGTCTTCTTCATTTCCTATT+AGG | - | chr5.3:66013650-66013669 | MS.gene61966:CDS | 35.0% | |
| TAAATTGAGTCCCTGGTTAT+AGG | + | chr5.3:66014566-66014585 | None:intergenic | 35.0% | |
| TACACAATTGCAGCAAAGTA+TGG | + | chr5.3:66013835-66013854 | None:intergenic | 35.0% | |
| TAGAAGCCGCAATTTATGTA+TGG | - | chr5.3:66015605-66015624 | MS.gene61966:CDS | 35.0% | |
| TCCGTGTGCATATATTTAGT+AGG | - | chr5.3:66014768-66014787 | MS.gene61966:intron | 35.0% | |
| TGGAAAATCAAACCTTAGGA+AGG | + | chr5.3:66015284-66015303 | None:intergenic | 35.0% | |
| TTGTTGAGTTAATGCCTTCT+TGG | - | chr5.3:66014280-66014299 | MS.gene61966:CDS | 35.0% | |
| TTTAGATAGTTGCACTGCTA+TGG | - | chr5.3:66015005-66015024 | MS.gene61966:intron | 35.0% | |
| ! | ACCTGCTGTCAAATTTTCAT+TGG | - | chr5.3:66014585-66014604 | MS.gene61966:intron | 35.0% |
| ! | ATGTAGTTTGACTTAAACCC+GGG | + | chr5.3:66015786-66015805 | None:intergenic | 35.0% |
| ! | TACACTTTTCCCTATGTAAC+AGG | - | chr5.3:66014978-66014997 | MS.gene61966:intron | 35.0% |
| ! | TCTTTCTTTTCACATGGTAC+AGG | + | chr5.3:66014213-66014232 | None:intergenic | 35.0% |
| !!! | TGTTTTGACTTTGTAGGATC+AGG | - | chr5.3:66013901-66013920 | MS.gene61966:intron | 35.0% |
| AAAAGGAGTTAGCACTGCAT+TGG | - | chr5.3:66013987-66014006 | MS.gene61966:intron | 40.0% | |
| AGAAAAGTGGCAGAGAGAAA+TGG | - | chr5.3:66014230-66014249 | MS.gene61966:CDS | 40.0% | |
| AGGATGACTTTGTAGTCGAA+CGG | + | chr5.3:66015669-66015688 | None:intergenic | 40.0% | |
| CTACTACTACCTTTGACTGT+AGG | - | chr5.3:66014742-66014761 | MS.gene61966:intron | 40.0% | |
| CTGATTTCTCTTGCGAAAAG+AGG | + | chr5.3:66015082-66015101 | None:intergenic | 40.0% | |
| GTAGTACTAGTAAGGGATCT+CGG | + | chr5.3:66014726-66014745 | None:intergenic | 40.0% | |
| GTATGTTGACCAAGGAATTG+TGG | - | chr5.3:66015035-66015054 | MS.gene61966:intron | 40.0% | |
| GTATTTGGATACCCTTCCTA+AGG | - | chr5.3:66015269-66015288 | MS.gene61966:intron | 40.0% | |
| TCAGGATATGTTTGCCAAGA+AGG | + | chr5.3:66014297-66014316 | None:intergenic | 40.0% | |
| TCTAACATGTTCTGTTCTGC+AGG | - | chr5.3:66014811-66014830 | MS.gene61966:intron | 40.0% | |
| TCTTGGCAAACATATCCTGA+TGG | - | chr5.3:66014297-66014316 | MS.gene61966:CDS | 40.0% | |
| TTCGACTACAAAGTCATCCT+GGG | - | chr5.3:66015669-66015688 | MS.gene61966:CDS | 40.0% | |
| TTGACTTTGTAGGATCAGGA+GGG | - | chr5.3:66013905-66013924 | MS.gene61966:intron | 40.0% | |
| TTGTAGTCATGTCAACGCAT+TGG | - | chr5.3:66014437-66014456 | MS.gene61966:intron | 40.0% | |
| ! | ACATGGCTGCTTTCAGTATT+TGG | + | chr5.3:66015206-66015225 | None:intergenic | 40.0% |
| ! | ACTCGGATTTTCCTATAACC+AGG | - | chr5.3:66014552-66014571 | MS.gene61966:intron | 40.0% |
| ! | AGCAATGCTGTTGATAGACA+TGG | + | chr5.3:66015223-66015242 | None:intergenic | 40.0% |
| ! | CAGCATTGCTTTAGATGACA+TGG | - | chr5.3:66015233-66015252 | MS.gene61966:intron | 40.0% |
| ! | CTCGGATTTTCCTATAACCA+GGG | - | chr5.3:66014553-66014572 | MS.gene61966:intron | 40.0% |
| ! | CTTTTCGCAAGAGAAATCAG+CGG | - | chr5.3:66015082-66015101 | MS.gene61966:CDS | 40.0% |
| ! | TACCAAGAACTAGCCTACAT+TGG | + | chr5.3:66014935-66014954 | None:intergenic | 40.0% |
| ! | TGCTTGGTGAAGATATGTCA+GGG | - | chr5.3:66013959-66013978 | MS.gene61966:intron | 40.0% |
| ! | TTCCAATGTAGGCTAGTTCT+TGG | - | chr5.3:66014930-66014949 | MS.gene61966:intron | 40.0% |
| ! | TTTGACTTTGTAGGATCAGG+AGG | - | chr5.3:66013904-66013923 | MS.gene61966:intron | 40.0% |
| !! | AAGGGTATCCAAATACGACT+CGG | + | chr5.3:66015265-66015284 | None:intergenic | 40.0% |
| !! | ATGGATTGGCTTCTTTGTGT+TGG | - | chr5.3:66014249-66014268 | MS.gene61966:CDS | 40.0% |
| !! | CTGGTGCCATACATAAATTG+CGG | + | chr5.3:66015614-66015633 | None:intergenic | 40.0% |
| !! | GAGTTTTGGTATGTTGACCA+AGG | - | chr5.3:66015027-66015046 | MS.gene61966:intron | 40.0% |
| !! | TGGGATTTGTTGCAACATGT+AGG | - | chr5.3:66014156-66014175 | MS.gene61966:CDS | 40.0% |
| ACTTTGTAGTCGAACGGCTA+GGG | + | chr5.3:66015663-66015682 | None:intergenic | 45.0% | |
| AGGTTTGCGAAGTTACTGCT+TGG | - | chr5.3:66013943-66013962 | MS.gene61966:intron | 45.0% | |
| AGTGGCAGAGAGAAATGGAT+TGG | - | chr5.3:66014235-66014254 | MS.gene61966:CDS | 45.0% | |
| ATCAGGAGGGGATATGATGA+AGG | - | chr5.3:66013918-66013937 | MS.gene61966:intron | 45.0% | |
| CAGAATGGAAGAACGTGCTT+GGG | - | chr5.3:66015475-66015494 | MS.gene61966:intron | 45.0% | |
| CTCAAGTGCAACATGCTCAT+TGG | + | chr5.3:66015572-66015591 | None:intergenic | 45.0% | |
| GACATAGTGCCCTTCCTAAT+AGG | + | chr5.3:66013667-66013686 | None:intergenic | 45.0% | |
| GAGGGGATATGATGAAGGAA+AGG | - | chr5.3:66013923-66013942 | MS.gene61966:intron | 45.0% | |
| GATATGTCAGGGTCTGGAAA+AGG | - | chr5.3:66013970-66013989 | MS.gene61966:intron | 45.0% | |
| GGACATTGTGAAGGACTTCA+TGG | - | chr5.3:66015690-66015709 | MS.gene61966:CDS | 45.0% | |
| GTGAAGGACTTCATGGTTGA+TGG | - | chr5.3:66015697-66015716 | MS.gene61966:CDS | 45.0% | |
| GTTCGACTACAAAGTCATCC+TGG | - | chr5.3:66015668-66015687 | MS.gene61966:CDS | 45.0% | |
| TCAGAATGGAAGAACGTGCT+TGG | - | chr5.3:66015474-66015493 | MS.gene61966:intron | 45.0% | |
| TCCTGATGGTAGTAAGCTAG+AGG | - | chr5.3:66014311-66014330 | MS.gene61966:CDS | 45.0% | |
| TCTTGAGTTCTCACTGAGAC+CGG | + | chr5.3:66015151-66015170 | None:intergenic | 45.0% | |
| TGACTTTGTAGGATCAGGAG+GGG | - | chr5.3:66013906-66013925 | MS.gene61966:intron | 45.0% | |
| TTGTCGAGTTTACGTAGAGC+TGG | + | chr5.3:66014878-66014897 | None:intergenic | 45.0% | |
| ! | AATGGGTCTTGTAGTTCCAC+TGG | - | chr5.3:66013583-66013602 | MS.gene61966:CDS | 45.0% |
| ! | ACCTCTAGCTTACTACCATC+AGG | + | chr5.3:66014315-66014334 | None:intergenic | 45.0% |
| ! | AGGGTATCCAAATACGACTC+GGG | + | chr5.3:66015264-66015283 | None:intergenic | 45.0% |
| ! | CTGCTTGGTGAAGATATGTC+AGG | - | chr5.3:66013958-66013977 | MS.gene61966:intron | 45.0% |
| ! | GTGGTTTAGAGTGAGATCTC+TGG | + | chr5.3:66015633-66015652 | None:intergenic | 45.0% |
| ! | GTTGCACTGCTATGGAGTTT+TGG | - | chr5.3:66015013-66015032 | MS.gene61966:intron | 45.0% |
| ATCTGAGCAACACGATCCAG+TGG | + | chr5.3:66013602-66013621 | None:intergenic | 50.0% | |
| ATTGTGGCACCAGATGCAGA+TGG | - | chr5.3:66015051-66015070 | MS.gene61966:CDS | 50.0% | |
| CAAGAGAAATCAGCGGCAAG+AGG | - | chr5.3:66015089-66015108 | MS.gene61966:CDS | 50.0% | |
| CAGCAGGTAAATTGAGTCCC+TGG | + | chr5.3:66014573-66014592 | None:intergenic | 50.0% | |
| GAAGTCCTTCACAATGTCCC+AGG | + | chr5.3:66015689-66015708 | None:intergenic | 50.0% | |
| GACTTTGTAGTCGAACGGCT+AGG | + | chr5.3:66015664-66015683 | None:intergenic | 50.0% | |
| GCAAGCACTCTTGAGAGAAC+TGG | + | chr5.3:66015531-66015550 | None:intergenic | 50.0% | |
| GCACTCTTGAGAGAACTGGT+CGG | + | chr5.3:66015527-66015546 | None:intergenic | 50.0% | |
| GGAAGTTCCCGAGTCGTATT+TGG | - | chr5.3:66015254-66015273 | MS.gene61966:intron | 50.0% | |
| GGTGAAGATATGTCAGGGTC+TGG | - | chr5.3:66013964-66013983 | MS.gene61966:intron | 50.0% | |
| GTCATCCTGGGACATTGTGA+AGG | - | chr5.3:66015681-66015700 | MS.gene61966:CDS | 50.0% | |
| TTCATTGAAGCAGCGCTTCC+CGG | - | chr5.3:66015765-66015784 | MS.gene61966:CDS | 50.0% | |
| ! | CACGGATTGCCTACAGTCAA+AGG | + | chr5.3:66014754-66014773 | None:intergenic | 50.0% |
| !! | CATCTGGTGCCACAATTCCT+TGG | + | chr5.3:66015047-66015066 | None:intergenic | 50.0% |
| ATCAGCGGCAAGAGGAGAAG+TGG | - | chr5.3:66015097-66015116 | MS.gene61966:CDS | 55.0% | |
| GAGGCTGATCCATCTGCATC+TGG | + | chr5.3:66015063-66015082 | None:intergenic | 55.0% | |
| TCATTGAAGCAGCGCTTCCC+GGG | - | chr5.3:66015766-66015785 | MS.gene61966:CDS | 55.0% | |
| AGCGGCAAGAGGAGAAGTGG+TGG | - | chr5.3:66015100-66015119 | MS.gene61966:CDS | 60.0% | |
| GAACGGCTAGGGTAGAGTGG+TGG | + | chr5.3:66015652-66015671 | None:intergenic | 60.0% | |
| GAGTTCTCACTGAGACCGGC+AGG | + | chr5.3:66015147-66015166 | None:intergenic | 60.0% | |
| GTCGAACGGCTAGGGTAGAG+TGG | + | chr5.3:66015655-66015674 | None:intergenic | 60.0% | |
| TTCTCACTGAGACCGGCAGG+AGG | + | chr5.3:66015144-66015163 | None:intergenic | 60.0% | |
| ! | CAGGAGGCACACGGGGTACT+GGG | + | chr5.3:66015128-66015147 | None:intergenic | 65.0% |
| ! | TGAGACCGGCAGGAGGCACA+CGG | + | chr5.3:66015137-66015156 | None:intergenic | 65.0% |
| GTACCCCGTGTGCCTCCTGC+CGG | - | chr5.3:66015129-66015148 | MS.gene61966:CDS | 70.0% | |
| ! | AGACCGGCAGGAGGCACACG+GGG | + | chr5.3:66015135-66015154 | None:intergenic | 70.0% |
| ! | GAGACCGGCAGGAGGCACAC+GGG | + | chr5.3:66015136-66015155 | None:intergenic | 70.0% |
| ! | GCAGGAGGCACACGGGGTAC+TGG | + | chr5.3:66015129-66015148 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 66013538 | 66015834 | 66013538 | ID=MS.gene61966 |
| chr5.3 | mRNA | 66013538 | 66015834 | 66013538 | ID=MS.gene61966.t1;Parent=MS.gene61966 |
| chr5.3 | exon | 66015597 | 66015834 | 66015597 | ID=MS.gene61966.t1.exon1;Parent=MS.gene61966.t1 |
| chr5.3 | CDS | 66015597 | 66015834 | 66015597 | ID=cds.MS.gene61966.t1;Parent=MS.gene61966.t1 |
| chr5.3 | exon | 66015333 | 66015449 | 66015333 | ID=MS.gene61966.t1.exon2;Parent=MS.gene61966.t1 |
| chr5.3 | CDS | 66015333 | 66015449 | 66015333 | ID=cds.MS.gene61966.t1;Parent=MS.gene61966.t1 |
| chr5.3 | exon | 66015040 | 66015194 | 66015040 | ID=MS.gene61966.t1.exon3;Parent=MS.gene61966.t1 |
| chr5.3 | CDS | 66015040 | 66015194 | 66015040 | ID=cds.MS.gene61966.t1;Parent=MS.gene61966.t1 |
| chr5.3 | exon | 66014465 | 66014539 | 66014465 | ID=MS.gene61966.t1.exon4;Parent=MS.gene61966.t1 |
| chr5.3 | CDS | 66014465 | 66014539 | 66014465 | ID=cds.MS.gene61966.t1;Parent=MS.gene61966.t1 |
| chr5.3 | exon | 66014082 | 66014372 | 66014082 | ID=MS.gene61966.t1.exon5;Parent=MS.gene61966.t1 |
| chr5.3 | CDS | 66014082 | 66014372 | 66014082 | ID=cds.MS.gene61966.t1;Parent=MS.gene61966.t1 |
| chr5.3 | exon | 66013538 | 66013894 | 66013538 | ID=MS.gene61966.t1.exon6;Parent=MS.gene61966.t1 |
| chr5.3 | CDS | 66013538 | 66013894 | 66013538 | ID=cds.MS.gene61966.t1;Parent=MS.gene61966.t1 |
| Gene Sequence |
| Protein sequence |
