Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63905.t1 | XP_004497780.1 | 90.4 | 342 | 33 | 0 | 4 | 345 | 3 | 344 | 3.60E-179 | 637.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63905.t1 | Q9SLN8 | 63.2 | 345 | 125 | 1 | 1 | 345 | 1 | 343 | 3.2e-128 | 459.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63905.t1 | A0A1S2Y2K2 | 90.4 | 342 | 33 | 0 | 4 | 345 | 3 | 344 | 2.6e-179 | 637.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene63905 | 0.804223 | 2.39E-49 | -1.69E-46 |
| MS.gene049182 | MS.gene63905 | 0.838831 | 2.28E-57 | -1.69E-46 |
| MS.gene050379 | MS.gene63905 | 0.80626 | 8.97E-50 | -1.69E-46 |
| MS.gene051959 | MS.gene63905 | 0.839796 | 1.28E-57 | -1.69E-46 |
| MS.gene051960 | MS.gene63905 | 0.844299 | 8.24E-59 | -1.69E-46 |
| MS.gene052053 | MS.gene63905 | 0.87642 | 1.42E-68 | -1.69E-46 |
| MS.gene053602 | MS.gene63905 | 0.822021 | 2.96E-53 | -1.69E-46 |
| MS.gene055150 | MS.gene63905 | 0.82807 | 1.10E-54 | -1.69E-46 |
| MS.gene055549 | MS.gene63905 | 0.872671 | 2.66E-67 | -1.69E-46 |
| MS.gene055550 | MS.gene63905 | 0.875419 | 3.13E-68 | -1.69E-46 |
| MS.gene055551 | MS.gene63905 | 0.813175 | 2.92E-51 | -1.69E-46 |
| MS.gene055886 | MS.gene63905 | 0.806752 | 7.06E-50 | -1.69E-46 |
| MS.gene056100 | MS.gene63905 | 0.813468 | 2.52E-51 | -1.69E-46 |
| MS.gene05624 | MS.gene63905 | 0.8097 | 1.66E-50 | -1.69E-46 |
| MS.gene056530 | MS.gene63905 | 0.856889 | 2.37E-62 | -1.69E-46 |
| MS.gene057001 | MS.gene63905 | 0.817615 | 3.01E-52 | -1.69E-46 |
| MS.gene057148 | MS.gene63905 | -0.810132 | 1.34E-50 | -1.69E-46 |
| MS.gene058628 | MS.gene63905 | 0.823003 | 1.75E-53 | -1.69E-46 |
| MS.gene058630 | MS.gene63905 | 0.814802 | 1.28E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene63905 | 0.818914 | 1.53E-52 | -1.69E-46 |
| MS.gene06023 | MS.gene63905 | 0.816485 | 5.40E-52 | -1.69E-46 |
| MS.gene060522 | MS.gene63905 | 0.819869 | 9.26E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63905.t1 | MTR_8g010030 | 63.557 | 343 | 123 | 2 | 4 | 345 | 3 | 344 | 1.89e-162 | 457 |
| MS.gene63905.t1 | MTR_8g009820 | 63.450 | 342 | 124 | 1 | 4 | 345 | 62 | 402 | 8.39e-160 | 453 |
| MS.gene63905.t1 | MTR_8g009980 | 60.465 | 344 | 132 | 2 | 4 | 345 | 3 | 344 | 1.08e-154 | 438 |
| MS.gene63905.t1 | MTR_8g009840 | 61.607 | 336 | 127 | 2 | 4 | 339 | 3 | 336 | 2.12e-153 | 442 |
| MS.gene63905.t1 | MTR_4g082970 | 60.290 | 345 | 133 | 2 | 3 | 345 | 8 | 350 | 1.25e-152 | 433 |
| MS.gene63905.t1 | MTR_8g009830 | 59.942 | 342 | 135 | 2 | 4 | 345 | 3 | 342 | 1.61e-152 | 432 |
| MS.gene63905.t1 | MTR_8g010020 | 59.649 | 342 | 106 | 2 | 4 | 345 | 3 | 312 | 1.08e-146 | 416 |
| MS.gene63905.t1 | MTR_7g406860 | 60.933 | 343 | 132 | 2 | 4 | 345 | 5 | 346 | 5.44e-146 | 416 |
| MS.gene63905.t1 | MTR_8g010000 | 56.268 | 343 | 123 | 3 | 4 | 345 | 3 | 319 | 5.77e-138 | 394 |
| MS.gene63905.t1 | MTR_0011s0280 | 44.380 | 347 | 186 | 4 | 4 | 345 | 2 | 346 | 3.13e-102 | 305 |
| MS.gene63905.t1 | MTR_8g007325 | 64.055 | 217 | 77 | 1 | 4 | 220 | 3 | 218 | 2.74e-95 | 283 |
| MS.gene63905.t1 | MTR_5g095030 | 89.844 | 128 | 13 | 0 | 216 | 343 | 9 | 136 | 5.89e-79 | 238 |
| MS.gene63905.t1 | MTR_2g088190 | 40.230 | 348 | 201 | 6 | 1 | 342 | 1 | 347 | 8.22e-78 | 242 |
| MS.gene63905.t1 | MTR_2g088220 | 40.184 | 326 | 189 | 5 | 1 | 320 | 1 | 326 | 3.66e-73 | 230 |
| MS.gene63905.t1 | MTR_2g088200 | 39.144 | 327 | 192 | 5 | 23 | 342 | 22 | 348 | 1.50e-67 | 216 |
| MS.gene63905.t1 | MTR_5g095020 | 96.774 | 62 | 1 | 1 | 25 | 86 | 1 | 61 | 5.11e-34 | 120 |
| MS.gene63905.t1 | MTR_4g086400 | 37.321 | 209 | 123 | 5 | 140 | 342 | 276 | 482 | 5.48e-30 | 119 |
| MS.gene63905.t1 | MTR_4g086400 | 37.321 | 209 | 123 | 5 | 140 | 342 | 416 | 622 | 9.23e-30 | 120 |
| MS.gene63905.t1 | MTR_4g086410 | 36.842 | 209 | 124 | 5 | 140 | 342 | 416 | 622 | 3.98e-29 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63905.t1 | AT1G26320 | 63.768 | 345 | 119 | 3 | 5 | 345 | 9 | 351 | 2.38e-158 | 447 |
| MS.gene63905.t1 | AT1G26320 | 62.899 | 345 | 117 | 4 | 5 | 345 | 9 | 346 | 3.05e-154 | 437 |
| MS.gene63905.t1 | AT5G16990 | 60.580 | 345 | 127 | 4 | 6 | 345 | 3 | 343 | 2.15e-153 | 434 |
| MS.gene63905.t1 | AT3G03080 | 61.337 | 344 | 128 | 2 | 5 | 345 | 9 | 350 | 3.13e-153 | 434 |
| MS.gene63905.t1 | AT5G16970 | 60.694 | 346 | 126 | 4 | 6 | 345 | 4 | 345 | 5.40e-153 | 434 |
| MS.gene63905.t1 | AT5G17000 | 60.694 | 346 | 126 | 4 | 6 | 345 | 4 | 345 | 6.16e-153 | 434 |
| MS.gene63905.t1 | AT5G37940 | 58.807 | 352 | 134 | 4 | 1 | 345 | 6 | 353 | 7.57e-150 | 426 |
| MS.gene63905.t1 | AT5G37980 | 59.130 | 345 | 134 | 3 | 6 | 345 | 11 | 353 | 8.02e-149 | 423 |
| MS.gene63905.t1 | AT5G16960 | 59.238 | 341 | 133 | 3 | 7 | 343 | 6 | 344 | 3.52e-146 | 416 |
| MS.gene63905.t1 | AT5G16960 | 59.238 | 341 | 133 | 3 | 7 | 343 | 6 | 344 | 3.52e-146 | 416 |
| MS.gene63905.t1 | AT5G38000 | 57.971 | 345 | 134 | 4 | 6 | 343 | 11 | 351 | 7.53e-145 | 413 |
| MS.gene63905.t1 | AT5G38000 | 56.851 | 343 | 136 | 5 | 6 | 341 | 11 | 348 | 2.82e-139 | 399 |
| MS.gene63905.t1 | AT3G59845 | 54.755 | 347 | 152 | 3 | 1 | 343 | 1 | 346 | 1.81e-133 | 384 |
| MS.gene63905.t1 | AT1G65560 | 56.374 | 353 | 143 | 6 | 1 | 345 | 1 | 350 | 8.12e-131 | 377 |
| MS.gene63905.t1 | AT5G38000 | 54.203 | 345 | 128 | 5 | 6 | 343 | 11 | 332 | 3.18e-129 | 373 |
| MS.gene63905.t1 | AT5G16980 | 50.000 | 340 | 131 | 3 | 6 | 345 | 5 | 305 | 6.82e-113 | 330 |
| MS.gene63905.t1 | AT1G65560 | 59.559 | 272 | 104 | 3 | 79 | 345 | 4 | 274 | 1.29e-110 | 323 |
| MS.gene63905.t1 | AT5G16980 | 65.652 | 230 | 79 | 0 | 116 | 345 | 10 | 239 | 2.94e-109 | 318 |
| MS.gene63905.t1 | AT5G16980 | 65.652 | 230 | 79 | 0 | 116 | 345 | 10 | 239 | 2.94e-109 | 318 |
| MS.gene63905.t1 | AT3G59845 | 60.408 | 245 | 95 | 2 | 100 | 343 | 1 | 244 | 3.61e-105 | 308 |
| MS.gene63905.t1 | AT5G17000 | 60.538 | 223 | 78 | 4 | 5 | 221 | 3 | 221 | 5.62e-92 | 275 |
| MS.gene63905.t1 | AT1G49670 | 34.928 | 209 | 128 | 5 | 140 | 342 | 412 | 618 | 1.27e-25 | 108 |
| MS.gene63905.t1 | AT1G49670 | 34.975 | 203 | 124 | 5 | 146 | 342 | 441 | 641 | 3.58e-24 | 103 |
| MS.gene63905.t1 | AT5G37960 | 45.783 | 83 | 44 | 1 | 264 | 345 | 25 | 107 | 5.83e-15 | 70.5 |
Find 64 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGACATAATCTCCTTTCTT+AGG | 0.186749 | 5.1:-76038129 | None:intergenic |
| TCTCAGCCAATTGTTGGATA+TGG | 0.212277 | 5.1:+76037809 | MS.gene63905:intron |
| TTGTTCCTCCTTGTAATTAA+AGG | 0.220154 | 5.1:-76038387 | None:intergenic |
| GTCTTTATCTCTTCAGCATT+TGG | 0.257772 | 5.1:+76038147 | MS.gene63905:CDS |
| AAATACATGTCTGTTTGTTT+TGG | 0.259959 | 5.1:-76037192 | None:intergenic |
| GTACCTCTTTCCTATTATAC+TGG | 0.275241 | 5.1:+76037962 | MS.gene63905:CDS |
| GCTTCTTCTGAAGCATCTTT+AGG | 0.302866 | 5.1:-76037243 | None:intergenic |
| ACCAAGTAATCCAGTATAAT+AGG | 0.317896 | 5.1:-76037972 | None:intergenic |
| TTTAGGAAGTTGTAAACTAA+TGG | 0.368693 | 5.1:-76037226 | None:intergenic |
| CTAGCTTTAGACTACATAAC+TGG | 0.371537 | 5.1:+76037165 | MS.gene63905:CDS |
| AAGTATATGTCTATTCCTTC+AGG | 0.376687 | 5.1:-76038805 | None:intergenic |
| TCCTATTATACTGGATTACT+TGG | 0.387026 | 5.1:+76037971 | MS.gene63905:CDS |
| TGTTTCTCTCAGCCAATTGT+TGG | 0.398931 | 5.1:+76037803 | MS.gene63905:intron |
| AAGTGCTGGAAGTAAATATA+AGG | 0.404456 | 5.1:+76038227 | MS.gene63905:CDS |
| CATACTCCATATCCAACAAT+TGG | 0.417973 | 5.1:-76037815 | None:intergenic |
| GGTGCAGTTGGTCAACTTGT+TGG | 0.433984 | 5.1:+76038168 | MS.gene63905:CDS |
| TCTTCAGCATTTGGTGCAGT+TGG | 0.434713 | 5.1:+76038156 | MS.gene63905:CDS |
| GACATATACTTTGACAATGT+TGG | 0.436284 | 5.1:+76038817 | MS.gene63905:CDS |
| AGACATAATCTCCTTTCTTA+GGG | 0.438933 | 5.1:-76038128 | None:intergenic |
| TGTTATGTTGTTGGAAGTGC+TGG | 0.440024 | 5.1:+76038213 | MS.gene63905:CDS |
| TCGTTATGTACTTACTGAAT+CGG | 0.449422 | 5.1:-76037358 | None:intergenic |
| ACTTCTTCAATGTCGCATCT+AGG | 0.454373 | 5.1:-76038412 | None:intergenic |
| CGCGGTCGAATTGTGGTGGC+TGG | 0.464338 | 5.1:+76038880 | MS.gene63905:CDS |
| TTTGATGAGGCTATCAGTCT+TGG | 0.465767 | 5.1:-76037924 | None:intergenic |
| GATGCTATACTCTTCCCATT+TGG | 0.465868 | 5.1:-76037897 | None:intergenic |
| TGGTCAACTAGCAAAATTGA+TGG | 0.468450 | 5.1:+76038188 | MS.gene63905:CDS |
| TGGTTTGGGGAGTCACCAAA+TGG | 0.470534 | 5.1:+76037882 | MS.gene63905:CDS |
| ATTATATATGTAGGTATGCC+TGG | 0.474482 | 5.1:+76038069 | MS.gene63905:intron |
| TTGATGGGATGTTATGTTGT+TGG | 0.475372 | 5.1:+76038204 | MS.gene63905:CDS |
| AGAACAAGTGAGCAACAAAC+AGG | 0.480774 | 5.1:+76037140 | MS.gene63905:CDS |
| ATCTTCCCTTCCCTAACATA+AGG | 0.481674 | 5.1:-76039042 | None:intergenic |
| CCTGGTATGACTGCTTATGC+AGG | 0.485648 | 5.1:+76038087 | MS.gene63905:CDS |
| CGCGGCGTCTCATGTTAAGA+AGG | 0.487677 | 5.1:-76038861 | None:intergenic |
| ATGAGAGGAACCAAAAGAAC+AGG | 0.495779 | 5.1:+76037306 | MS.gene63905:CDS |
| AACATTGCTTCTAATGCAGC+TGG | 0.496232 | 5.1:-76039105 | None:intergenic |
| TGATGAGGCCTTTAATTACA+AGG | 0.501845 | 5.1:+76038379 | MS.gene63905:CDS |
| TATGTTGAAGATATAGCTAA+AGG | 0.505580 | 5.1:+76039069 | MS.gene63905:CDS |
| GAAGTTGGTGTCCCTAAGAA+AGG | 0.513037 | 5.1:+76038117 | MS.gene63905:CDS |
| CGTTATGTACTTACTGAATC+GGG | 0.514254 | 5.1:-76037357 | None:intergenic |
| ATGTTGAAGATATAGCTAAA+GGG | 0.517100 | 5.1:+76039070 | MS.gene63905:CDS |
| TATGCAGGTTTCTATGAAGT+TGG | 0.517868 | 5.1:+76038102 | MS.gene63905:CDS |
| TGCTTCAGAAGAAGCTGTGT+TGG | 0.523213 | 5.1:+76037251 | MS.gene63905:CDS |
| ATGTTCACAGGCAAAAGTGC+TGG | 0.538532 | 5.1:+76039123 | MS.gene63905:CDS |
| CCTGCATAAGCAGTCATACC+AGG | 0.538967 | 5.1:-76038087 | None:intergenic |
| CGGGAGAGAAGGAATAAAAG+AGG | 0.542739 | 5.1:-76037338 | None:intergenic |
| AAGTTGTAAACTAATGGTAG+AGG | 0.558112 | 5.1:-76037220 | None:intergenic |
| AATCCAGTATAATAGGAAAG+AGG | 0.565113 | 5.1:-76037965 | None:intergenic |
| GTTGATAGGTACTTTCCTGA+AGG | 0.565387 | 5.1:+76038790 | MS.gene63905:intron |
| GAGACGCCGCGGTCGAATTG+TGG | 0.565480 | 5.1:+76038873 | MS.gene63905:CDS |
| TCTTGTGATCCTTACATGAG+AGG | 0.570442 | 5.1:+76037291 | MS.gene63905:CDS |
| ATATACTTTGACAATGTTGG+TGG | 0.576525 | 5.1:+76038820 | MS.gene63905:CDS |
| GAGCAAGTTTGGGTTTGATG+AGG | 0.579277 | 5.1:+76038364 | MS.gene63905:CDS |
| GCATTAGAAGCAATGTTCAC+AGG | 0.584098 | 5.1:+76039111 | MS.gene63905:CDS |
| GGTTTGGGGAGTCACCAAAT+GGG | 0.589430 | 5.1:+76037883 | MS.gene63905:CDS |
| TAGCTAAAGGGATTGAGAGT+GGG | 0.592897 | 5.1:+76039082 | MS.gene63905:CDS |
| ACTTACTGAATCGGGAGAGA+AGG | 0.593515 | 5.1:-76037349 | None:intergenic |
| GCGGCGTCTCATGTTAAGAA+GGG | 0.635176 | 5.1:-76038860 | None:intergenic |
| TATGAACTTGATGAACCTCA+AGG | 0.637072 | 5.1:+76038916 | MS.gene63905:CDS |
| ATAGCTAAAGGGATTGAGAG+TGG | 0.645427 | 5.1:+76039081 | MS.gene63905:CDS |
| GGTCAACTAGCAAAATTGAT+GGG | 0.646505 | 5.1:+76038189 | MS.gene63905:CDS |
| ACGCCGCGGTCGAATTGTGG+TGG | 0.652143 | 5.1:+76038876 | MS.gene63905:CDS |
| TGAGGCCTTTAATTACAAGG+AGG | 0.704335 | 5.1:+76038382 | MS.gene63905:CDS |
| CTTCTTAACATGAGACGCCG+CGG | 0.740483 | 5.1:+76038862 | MS.gene63905:CDS |
| CAGCCACCACAATTCGACCG+CGG | 0.745630 | 5.1:-76038879 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAGTTATTATATATGT+AGG | + | chr5.1:76038060-76038079 | MS.gene63905:intron | 15.0% |
| !!! | TGTAGACAATTTTAATTTAA+AGG | - | chr5.1:76037516-76037535 | None:intergenic | 15.0% |
| !!! | TTTTAATTTAAAGGTAAACT+TGG | - | chr5.1:76037507-76037526 | None:intergenic | 15.0% |
| !! | AAAACAAAACAGTATCAATT+AGG | - | chr5.1:76038314-76038333 | None:intergenic | 20.0% |
| !! | AAACATCCAAATTTCAAAAA+AGG | + | chr5.1:76037854-76037873 | MS.gene63905:CDS | 20.0% |
| !! | TGCTATGATTAAGTATTATA+AGG | + | chr5.1:76037730-76037749 | MS.gene63905:intron | 20.0% |
| !! | TTAAGCCATAAAATTCAAAT+CGG | - | chr5.1:76037583-76037602 | None:intergenic | 20.0% |
| !! | TTTAGTATTCATTACAAAAG+AGG | - | chr5.1:76038739-76038758 | None:intergenic | 20.0% |
| !!! | TGTTTTCATGTCAATAAATA+AGG | + | chr5.1:76038328-76038347 | MS.gene63905:intron | 20.0% |
| ! | AAAATTGTGTCCAAAAACTT+TGG | - | chr5.1:76039021-76039040 | None:intergenic | 25.0% |
| ! | AAATTTCAAAAAAGGAGACT+TGG | + | chr5.1:76037862-76037881 | MS.gene63905:CDS | 25.0% |
| ! | ATGTTGAAGATATAGCTAAA+GGG | + | chr5.1:76039070-76039089 | MS.gene63905:CDS | 25.0% |
| ! | ATTCAAATCGGTTGTAAAAA+TGG | - | chr5.1:76037571-76037590 | None:intergenic | 25.0% |
| ! | TATGTTGAAGATATAGCTAA+AGG | + | chr5.1:76039069-76039088 | MS.gene63905:CDS | 25.0% |
| ! | TGATAGAACCACAATTAATT+TGG | - | chr5.1:76037448-76037467 | None:intergenic | 25.0% |
| ! | TTACTTGTTCAATTGTTCAT+AGG | - | chr5.1:76038640-76038659 | None:intergenic | 25.0% |
| ! | TTTAGGAAGTTGTAAACTAA+TGG | - | chr5.1:76037229-76037248 | None:intergenic | 25.0% |
| !! | AAATACATGTCTGTTTGTTT+TGG | - | chr5.1:76037195-76037214 | None:intergenic | 25.0% |
| !! | TCACTTATATCCAAAGTTTT+TGG | + | chr5.1:76039008-76039027 | MS.gene63905:CDS | 25.0% |
| !!! | AAGTCTCCTTTTTTGAAATT+TGG | - | chr5.1:76037863-76037882 | None:intergenic | 25.0% |
| !!! | ATATTTTGAAGAGCAAGTTT+GGG | + | chr5.1:76038354-76038373 | MS.gene63905:CDS | 25.0% |
| !!! | ATTAAGTTTTTTATGCCTTG+AGG | - | chr5.1:76038934-76038953 | None:intergenic | 25.0% |
| !!! | TACAACCGATTTGAATTTTA+TGG | + | chr5.1:76037575-76037594 | MS.gene63905:intron | 25.0% |
| AAGACATAATCTCCTTTCTT+AGG | - | chr5.1:76038132-76038151 | None:intergenic | 30.0% | |
| AAGTAATGATCAAGAACCTA+AGG | + | chr5.1:76038654-76038673 | MS.gene63905:intron | 30.0% | |
| AAGTATATGTCTATTCCTTC+AGG | - | chr5.1:76038808-76038827 | None:intergenic | 30.0% | |
| AAGTTGTAAACTAATGGTAG+AGG | - | chr5.1:76037223-76037242 | None:intergenic | 30.0% | |
| AATCCAGTATAATAGGAAAG+AGG | - | chr5.1:76037968-76037987 | None:intergenic | 30.0% | |
| ACCAAGTAATCCAGTATAAT+AGG | - | chr5.1:76037975-76037994 | None:intergenic | 30.0% | |
| ACTAGCAAAAAATTTCGCTT+AGG | + | chr5.1:76038514-76038533 | MS.gene63905:intron | 30.0% | |
| AGACATAATCTCCTTTCTTA+GGG | - | chr5.1:76038131-76038150 | None:intergenic | 30.0% | |
| ATATACTTTGACAATGTTGG+TGG | + | chr5.1:76038820-76038839 | MS.gene63905:CDS | 30.0% | |
| ATTATATATGTAGGTATGCC+TGG | + | chr5.1:76038069-76038088 | MS.gene63905:intron | 30.0% | |
| CTAATCTTAGCTGAGAAAAA+TGG | - | chr5.1:76038684-76038703 | None:intergenic | 30.0% | |
| GACATATACTTTGACAATGT+TGG | + | chr5.1:76038817-76038836 | MS.gene63905:CDS | 30.0% | |
| GTATTCATTACAAAAGAGGT+TGG | - | chr5.1:76038735-76038754 | None:intergenic | 30.0% | |
| GTTCATAGGATAATTAACGT+CGG | - | chr5.1:76038626-76038645 | None:intergenic | 30.0% | |
| GTTCTGTTTCAATTGTTGAT+AGG | + | chr5.1:76038776-76038795 | MS.gene63905:intron | 30.0% | |
| TAGAATACGATACTTGCTTT+AGG | + | chr5.1:76038583-76038602 | MS.gene63905:intron | 30.0% | |
| TATGTGATTATCTCTTCTAG+AGG | + | chr5.1:76037759-76037778 | MS.gene63905:intron | 30.0% | |
| TCCTATTATACTGGATTACT+TGG | + | chr5.1:76037971-76037990 | MS.gene63905:CDS | 30.0% | |
| TCGTTATGTACTTACTGAAT+CGG | - | chr5.1:76037361-76037380 | None:intergenic | 30.0% | |
| TTGTTCCTCCTTGTAATTAA+AGG | - | chr5.1:76038390-76038409 | None:intergenic | 30.0% | |
| ! | AAAAATGGTGTTAGTCATGT+AGG | - | chr5.1:76037556-76037575 | None:intergenic | 30.0% |
| ! | ACACAATTTTGCCTTATGTT+AGG | + | chr5.1:76039031-76039050 | MS.gene63905:CDS | 30.0% |
| ! | ACGACAAATTATGTTGACTA+AGG | + | chr5.1:76037687-76037706 | MS.gene63905:intron | 30.0% |
| ! | CACAATTTTGCCTTATGTTA+GGG | + | chr5.1:76039032-76039051 | MS.gene63905:CDS | 30.0% |
| ! | CGACAAATTATGTTGACTAA+GGG | + | chr5.1:76037688-76037707 | MS.gene63905:intron | 30.0% |
| ! | GAACCACAATTAATTTGGAA+CGG | - | chr5.1:76037443-76037462 | None:intergenic | 30.0% |
| ! | TCAACATAATTTGTCGTCTT+AGG | - | chr5.1:76037684-76037703 | None:intergenic | 30.0% |
| ! | TGAGAAAAATGGATTTCCTT+AGG | - | chr5.1:76038673-76038692 | None:intergenic | 30.0% |
| !! | AAGTGCTGGAAGTAAATATA+AGG | + | chr5.1:76038227-76038246 | MS.gene63905:CDS | 30.0% |
| !! | GATATTTTGAAGAGCAAGTT+TGG | + | chr5.1:76038353-76038372 | MS.gene63905:CDS | 30.0% |
| !!! | AAGCGAAATTTTTTGCTAGT+CGG | - | chr5.1:76038514-76038533 | None:intergenic | 30.0% |
| !!! | TTTAGGCCTCACTTTTTTTT+GGG | + | chr5.1:76038600-76038619 | MS.gene63905:intron | 30.0% |
| CATACTCCATATCCAACAAT+TGG | - | chr5.1:76037818-76037837 | None:intergenic | 35.0% | |
| CATCCGTTCCAAATTAATTG+TGG | + | chr5.1:76037437-76037456 | MS.gene63905:intron | 35.0% | |
| CGTTATGTACTTACTGAATC+GGG | - | chr5.1:76037360-76037379 | None:intergenic | 35.0% | |
| GGTCAACTAGCAAAATTGAT+GGG | + | chr5.1:76038189-76038208 | MS.gene63905:CDS | 35.0% | |
| GTACCTCTTTCCTATTATAC+TGG | + | chr5.1:76037962-76037981 | MS.gene63905:CDS | 35.0% | |
| GTCTTTATCTCTTCAGCATT+TGG | + | chr5.1:76038147-76038166 | MS.gene63905:CDS | 35.0% | |
| TATGAACTTGATGAACCTCA+AGG | + | chr5.1:76038916-76038935 | MS.gene63905:CDS | 35.0% | |
| TATGCAGGTTTCTATGAAGT+TGG | + | chr5.1:76038102-76038121 | MS.gene63905:CDS | 35.0% | |
| TGATGAGGCCTTTAATTACA+AGG | + | chr5.1:76038379-76038398 | MS.gene63905:CDS | 35.0% | |
| TGGTCAACTAGCAAAATTGA+TGG | + | chr5.1:76038188-76038207 | MS.gene63905:CDS | 35.0% | |
| TTGATGGGATGTTATGTTGT+TGG | + | chr5.1:76038204-76038223 | MS.gene63905:CDS | 35.0% | |
| ! | AAAAAAGGAGACTTGGTTTG+GGG | + | chr5.1:76037869-76037888 | MS.gene63905:CDS | 35.0% |
| ! | ATTTTGCCTTATGTTAGGGA+AGG | + | chr5.1:76039036-76039055 | MS.gene63905:CDS | 35.0% |
| ! | CAAAAAAGGAGACTTGGTTT+GGG | + | chr5.1:76037868-76037887 | MS.gene63905:CDS | 35.0% |
| ! | CACAATTAATTTGGAACGGA+TGG | - | chr5.1:76037439-76037458 | None:intergenic | 35.0% |
| ! | TCAAAAAAGGAGACTTGGTT+TGG | + | chr5.1:76037867-76037886 | MS.gene63905:CDS | 35.0% |
| ! | TTTTGCCTTATGTTAGGGAA+GGG | + | chr5.1:76039037-76039056 | MS.gene63905:CDS | 35.0% |
| !! | ATGGATCACTCTGTTAGTTT+TGG | - | chr5.1:76038487-76038506 | None:intergenic | 35.0% |
| !! | CTAGCTTTAGACTACATAAC+TGG | + | chr5.1:76037165-76037184 | MS.gene63905:CDS | 35.0% |
| !!! | CTTTAGGCCTCACTTTTTTT+TGG | + | chr5.1:76038599-76038618 | MS.gene63905:intron | 35.0% |
| !!! | GTTGTTTTTGCCTGTTCTTT+TGG | - | chr5.1:76037319-76037338 | None:intergenic | 35.0% |
| AACATTGCTTCTAATGCAGC+TGG | - | chr5.1:76039108-76039127 | None:intergenic | 40.0% | |
| ACTTCTTCAATGTCGCATCT+AGG | - | chr5.1:76038415-76038434 | None:intergenic | 40.0% | |
| AGAACAAGTGAGCAACAAAC+AGG | + | chr5.1:76037140-76037159 | MS.gene63905:CDS | 40.0% | |
| ATAGCTAAAGGGATTGAGAG+TGG | + | chr5.1:76039081-76039100 | MS.gene63905:CDS | 40.0% | |
| ATCTTCCCTTCCCTAACATA+AGG | - | chr5.1:76039045-76039064 | None:intergenic | 40.0% | |
| ATGAGAGGAACCAAAAGAAC+AGG | + | chr5.1:76037306-76037325 | MS.gene63905:CDS | 40.0% | |
| GATGCTATACTCTTCCCATT+TGG | - | chr5.1:76037900-76037919 | None:intergenic | 40.0% | |
| GCATTAGAAGCAATGTTCAC+AGG | + | chr5.1:76039111-76039130 | MS.gene63905:CDS | 40.0% | |
| TAAAGAATGTTGTGTCCACG+AGG | - | chr5.1:76037629-76037648 | None:intergenic | 40.0% | |
| TAGCTAAAGGGATTGAGAGT+GGG | + | chr5.1:76039082-76039101 | MS.gene63905:CDS | 40.0% | |
| TCTCAGCCAATTGTTGGATA+TGG | + | chr5.1:76037809-76037828 | MS.gene63905:intron | 40.0% | |
| TCTTGTGATCCTTACATGAG+AGG | + | chr5.1:76037291-76037310 | MS.gene63905:CDS | 40.0% | |
| TGAGGCCTTTAATTACAAGG+AGG | + | chr5.1:76038382-76038401 | MS.gene63905:CDS | 40.0% | |
| TGTTTCTCTCAGCCAATTGT+TGG | + | chr5.1:76037803-76037822 | MS.gene63905:intron | 40.0% | |
| TTTGATGAGGCTATCAGTCT+TGG | - | chr5.1:76037927-76037946 | None:intergenic | 40.0% | |
| ! | GAACGTCGCAACACTTATTT+TGG | - | chr5.1:76037474-76037493 | None:intergenic | 40.0% |
| ! | GTTGATAGGTACTTTCCTGA+AGG | + | chr5.1:76038790-76038809 | MS.gene63905:intron | 40.0% |
| ! | TGTTATGTTGTTGGAAGTGC+TGG | + | chr5.1:76038213-76038232 | MS.gene63905:CDS | 40.0% |
| !! | CAGCATGCTCAATTTTGATG+AGG | - | chr5.1:76037940-76037959 | None:intergenic | 40.0% |
| !! | GCTTCTTCTGAAGCATCTTT+AGG | - | chr5.1:76037246-76037265 | None:intergenic | 40.0% |
| !!! | CTTTTGGTTCCTCTCATGTA+AGG | - | chr5.1:76037303-76037322 | None:intergenic | 40.0% |
| !!! | TTTTTTGCTAGTCGGTCTCA+TGG | - | chr5.1:76038506-76038525 | None:intergenic | 40.0% |
| ACTTACTGAATCGGGAGAGA+AGG | - | chr5.1:76037352-76037371 | None:intergenic | 45.0% | |
| AGTCAAACTGTAACACCTCG+TGG | + | chr5.1:76037611-76037630 | MS.gene63905:intron | 45.0% | |
| CGGGAGAGAAGGAATAAAAG+AGG | - | chr5.1:76037341-76037360 | None:intergenic | 45.0% | |
| TGCTTCAGAAGAAGCTGTGT+TGG | + | chr5.1:76037251-76037270 | MS.gene63905:CDS | 45.0% | |
| ! | ATGTTCACAGGCAAAAGTGC+TGG | + | chr5.1:76039123-76039142 | MS.gene63905:CDS | 45.0% |
| ! | GAGCAAGTTTGGGTTTGATG+AGG | + | chr5.1:76038364-76038383 | MS.gene63905:CDS | 45.0% |
| !! | GAAGTTGGTGTCCCTAAGAA+AGG | + | chr5.1:76038117-76038136 | MS.gene63905:CDS | 45.0% |
| !! | TCTTCAGCATTTGGTGCAGT+TGG | + | chr5.1:76038156-76038175 | MS.gene63905:CDS | 45.0% |
| CCTGCATAAGCAGTCATACC+AGG | - | chr5.1:76038090-76038109 | None:intergenic | 50.0% | |
| CCTGGTATGACTGCTTATGC+AGG | + | chr5.1:76038087-76038106 | MS.gene63905:CDS | 50.0% | |
| CGTCGGCCCAAAAAAAAGTG+AGG | - | chr5.1:76038609-76038628 | None:intergenic | 50.0% | |
| CTTCTTAACATGAGACGCCG+CGG | + | chr5.1:76038862-76038881 | MS.gene63905:CDS | 50.0% | |
| GCGGCGTCTCATGTTAAGAA+GGG | - | chr5.1:76038863-76038882 | None:intergenic | 50.0% | |
| GGTGCAGTTGGTCAACTTGT+TGG | + | chr5.1:76038168-76038187 | MS.gene63905:CDS | 50.0% | |
| GGTTTGGGGAGTCACCAAAT+GGG | + | chr5.1:76037883-76037902 | MS.gene63905:CDS | 50.0% | |
| ! | TGGTTTGGGGAGTCACCAAA+TGG | + | chr5.1:76037882-76037901 | MS.gene63905:CDS | 50.0% |
| CGCGGCGTCTCATGTTAAGA+AGG | - | chr5.1:76038864-76038883 | None:intergenic | 55.0% | |
| CAGCCACCACAATTCGACCG+CGG | - | chr5.1:76038882-76038901 | None:intergenic | 60.0% | |
| ACGCCGCGGTCGAATTGTGG+TGG | + | chr5.1:76038876-76038895 | MS.gene63905:CDS | 65.0% | |
| CGCGGTCGAATTGTGGTGGC+TGG | + | chr5.1:76038880-76038899 | MS.gene63905:CDS | 65.0% | |
| GAGACGCCGCGGTCGAATTG+TGG | + | chr5.1:76038873-76038892 | MS.gene63905:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 76037135 | 76039176 | 76037135 | ID=MS.gene63905 |
| chr5.1 | mRNA | 76037135 | 76039176 | 76037135 | ID=MS.gene63905.t1;Parent=MS.gene63905 |
| chr5.1 | exon | 76037135 | 76037365 | 76037135 | ID=MS.gene63905.t1.exon1;Parent=MS.gene63905.t1 |
| chr5.1 | CDS | 76037135 | 76037365 | 76037135 | ID=cds.MS.gene63905.t1;Parent=MS.gene63905.t1 |
| chr5.1 | exon | 76037815 | 76037992 | 76037815 | ID=MS.gene63905.t1.exon2;Parent=MS.gene63905.t1 |
| chr5.1 | CDS | 76037815 | 76037992 | 76037815 | ID=cds.MS.gene63905.t1;Parent=MS.gene63905.t1 |
| chr5.1 | exon | 76038082 | 76038248 | 76038082 | ID=MS.gene63905.t1.exon3;Parent=MS.gene63905.t1 |
| chr5.1 | CDS | 76038082 | 76038248 | 76038082 | ID=cds.MS.gene63905.t1;Parent=MS.gene63905.t1 |
| chr5.1 | exon | 76038350 | 76038432 | 76038350 | ID=MS.gene63905.t1.exon4;Parent=MS.gene63905.t1 |
| chr5.1 | CDS | 76038350 | 76038432 | 76038350 | ID=cds.MS.gene63905.t1;Parent=MS.gene63905.t1 |
| chr5.1 | exon | 76038798 | 76039176 | 76038798 | ID=MS.gene63905.t1.exon5;Parent=MS.gene63905.t1 |
| chr5.1 | CDS | 76038798 | 76039176 | 76038798 | ID=cds.MS.gene63905.t1;Parent=MS.gene63905.t1 |
| Gene Sequence |
| Protein sequence |
