Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64412.t1 | RHN73608.1 | 96.9 | 392 | 12 | 0 | 1 | 392 | 334 | 725 | 7.10E-203 | 716.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64412.t1 | Q9LYG9 | 53.8 | 392 | 176 | 2 | 2 | 392 | 343 | 730 | 7.9e-110 | 398.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64412.t1 | A0A072VHB6 | 96.9 | 392 | 12 | 0 | 1 | 392 | 354 | 745 | 5.1e-203 | 716.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049850 | MS.gene64412 | 0.813009 | 3.18E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene64412 | 0.805042 | 1.62E-49 | -1.69E-46 |
| MS.gene051180 | MS.gene64412 | 0.837722 | 4.39E-57 | -1.69E-46 |
| MS.gene051279 | MS.gene64412 | 0.80185 | 7.41E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene64412 | 0.811195 | 7.90E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene64412 | 0.813474 | 2.51E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene64412 | 0.810549 | 1.09E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene64412 | 0.809342 | 1.98E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene64412 | 0.804296 | 2.31E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene64412 | 0.810514 | 1.11E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene64412 | 0.82656 | 2.54E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene64412 | 0.801682 | 8.02E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene64412 | 0.825504 | 4.52E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene64412 | 0.841321 | 5.10E-58 | -1.69E-46 |
| MS.gene055468 | MS.gene64412 | 0.814546 | 1.46E-51 | -1.69E-46 |
| MS.gene055778 | MS.gene64412 | 0.804812 | 1.80E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene64412 | 0.81564 | 8.33E-52 | -1.69E-46 |
| MS.gene05604 | MS.gene64412 | 0.804453 | 2.14E-49 | -1.69E-46 |
| MS.gene056173 | MS.gene64412 | 0.823342 | 1.46E-53 | -1.69E-46 |
| MS.gene057444 | MS.gene64412 | 0.815506 | 8.93E-52 | -1.69E-46 |
| MS.gene057693 | MS.gene64412 | 0.80384 | 2.88E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene64412 | 0.804952 | 1.69E-49 | -1.69E-46 |
| MS.gene05847 | MS.gene64412 | 0.801356 | 9.36E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene64412 | 0.813474 | 2.51E-51 | -1.69E-46 |
| MS.gene058636 | MS.gene64412 | 0.803532 | 3.33E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene64412 | 0.816857 | 4.46E-52 | -1.69E-46 |
| MS.gene059272 | MS.gene64412 | 0.800702 | 1.27E-48 | -1.69E-46 |
| MS.gene059625 | MS.gene64412 | 0.804579 | 2.02E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene64412 | 0.803089 | 4.12E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64412.t1 | MTR_2g041220 | 96.939 | 392 | 12 | 0 | 1 | 392 | 354 | 745 | 0.0 | 771 |
| MS.gene64412.t1 | MTR_3g104940 | 56.566 | 396 | 164 | 4 | 2 | 395 | 375 | 764 | 9.64e-151 | 445 |
| MS.gene64412.t1 | MTR_3g104990 | 58.586 | 396 | 156 | 5 | 2 | 395 | 374 | 763 | 1.17e-148 | 440 |
| MS.gene64412.t1 | MTR_3g104920 | 55.668 | 397 | 166 | 5 | 2 | 395 | 340 | 729 | 1.15e-143 | 426 |
| MS.gene64412.t1 | MTR_3g104920 | 55.668 | 397 | 166 | 5 | 2 | 395 | 352 | 741 | 2.18e-143 | 426 |
| MS.gene64412.t1 | MTR_8g071250 | 57.182 | 369 | 152 | 2 | 25 | 392 | 325 | 688 | 4.71e-138 | 410 |
| MS.gene64412.t1 | MTR_1g113850 | 50.704 | 355 | 171 | 2 | 37 | 390 | 554 | 905 | 2.48e-115 | 358 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64412.t1 | AT5G12080 | 55.867 | 392 | 168 | 2 | 2 | 392 | 343 | 730 | 1.05e-158 | 464 |
| MS.gene64412.t1 | AT5G12080 | 55.867 | 392 | 168 | 2 | 2 | 392 | 343 | 730 | 1.05e-158 | 464 |
| MS.gene64412.t1 | AT5G12080 | 55.867 | 392 | 168 | 2 | 2 | 392 | 343 | 730 | 1.05e-158 | 464 |
| MS.gene64412.t1 | AT5G19520 | 51.777 | 394 | 182 | 4 | 2 | 394 | 355 | 741 | 1.05e-133 | 400 |
| MS.gene64412.t1 | AT5G19520 | 51.777 | 394 | 182 | 4 | 2 | 394 | 355 | 741 | 1.05e-133 | 400 |
| MS.gene64412.t1 | AT1G53470 | 50.000 | 362 | 176 | 2 | 28 | 387 | 494 | 852 | 2.47e-116 | 359 |
| MS.gene64412.t1 | AT2G17010 | 45.604 | 364 | 194 | 2 | 28 | 390 | 525 | 885 | 2.12e-110 | 345 |
| MS.gene64412.t1 | AT1G78610 | 48.315 | 356 | 182 | 1 | 35 | 390 | 474 | 827 | 1.73e-106 | 333 |
| MS.gene64412.t1 | AT2G17000 | 44.271 | 384 | 206 | 2 | 7 | 390 | 443 | 818 | 4.65e-106 | 332 |
| MS.gene64412.t1 | AT2G17000 | 44.271 | 384 | 206 | 2 | 7 | 390 | 443 | 818 | 6.53e-106 | 332 |
| MS.gene64412.t1 | AT3G14810 | 47.520 | 383 | 189 | 2 | 5 | 387 | 481 | 851 | 7.06e-106 | 332 |
| MS.gene64412.t1 | AT3G14810 | 46.997 | 383 | 189 | 3 | 5 | 387 | 448 | 816 | 6.54e-103 | 323 |
| MS.gene64412.t1 | AT2G17010 | 43.200 | 125 | 67 | 2 | 28 | 151 | 525 | 646 | 4.53e-20 | 92.8 |
Find 62 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTATAATTCTGAAAGTTTA+TGG | 0.180611 | 2.1:-49284230 | None:intergenic |
| TCAACAGAATCGCTCATTTC+GGG | 0.239097 | 2.1:-49283712 | None:intergenic |
| CAATTCATCAACAGCTGTTT+TGG | 0.246940 | 2.1:-49283146 | None:intergenic |
| TTAGTTGCAAGAACTGAATT+TGG | 0.254803 | 2.1:-49283664 | None:intergenic |
| TGATCTTCTGCTGCTCTTAT+CGG | 0.264757 | 2.1:-49284251 | None:intergenic |
| TATTGTGTGGCTGCTTGTTA+TGG | 0.288544 | 2.1:+49283207 | MS.gene64412:CDS |
| TTCAACAGAATCGCTCATTT+CGG | 0.301791 | 2.1:-49283713 | None:intergenic |
| ATTAATGTTATCCGGAGTTC+TGG | 0.308605 | 2.1:+49282269 | MS.gene64412:CDS |
| TTCCTCCGTGGTTTCATGTA+TGG | 0.316689 | 2.1:-49284372 | None:intergenic |
| ATTGTGTGGCTGCTTGTTAT+GGG | 0.325380 | 2.1:+49283208 | MS.gene64412:CDS |
| ACAAAATCTTACTTGCTTCC+TGG | 0.345813 | 2.1:-49282419 | None:intergenic |
| GAATGTAAACAAGATGAAAA+TGG | 0.355952 | 2.1:+49284189 | MS.gene64412:CDS |
| TTACTTGTGGTGTTTGTGTT+TGG | 0.360216 | 2.1:+49283274 | MS.gene64412:CDS |
| ATAACATGTTTGCAGATACT+TGG | 0.388505 | 2.1:+49284111 | MS.gene64412:intron |
| TTTGCAGATACTTGGAGAAT+AGG | 0.415706 | 2.1:+49284119 | MS.gene64412:intron |
| TTAGAGATAATGAGAAGAAA+GGG | 0.418341 | 2.1:+49282159 | MS.gene64412:CDS |
| TCTACTTCAATAGAAAGTAT+TGG | 0.419528 | 2.1:+49283751 | MS.gene64412:CDS |
| AACAAGCAGCCACACAATAA+TGG | 0.421577 | 2.1:-49283203 | None:intergenic |
| TTGTGTCATTGATGGTGTTC+AGG | 0.422351 | 2.1:+49283369 | MS.gene64412:CDS |
| AAGTTCGTCTCGGTCATGTT+AGG | 0.425250 | 2.1:+49284341 | MS.gene64412:CDS |
| AAACCACAATGTAATAGTTA+AGG | 0.428384 | 2.1:+49284159 | MS.gene64412:CDS |
| ATTAGAGATAATGAGAAGAA+AGG | 0.431576 | 2.1:+49282158 | MS.gene64412:CDS |
| AAGGATTGATTAATGTTATC+CGG | 0.442671 | 2.1:+49282261 | MS.gene64412:CDS |
| TTCAGGAATGTTGCTAAGCC+AGG | 0.450366 | 2.1:+49282401 | MS.gene64412:CDS |
| GGTGATCGTTGTGTCATTGA+TGG | 0.459818 | 2.1:+49283361 | MS.gene64412:CDS |
| AGAGGAAGTCTCTTAAGAAC+TGG | 0.476384 | 2.1:+49282630 | MS.gene64412:CDS |
| TTTGAAGGAGCAGTTGAGAC+TGG | 0.480645 | 2.1:+49282599 | MS.gene64412:CDS |
| AATGAAACAAGAGAAAGTTT+CGG | 0.484314 | 2.1:+49282226 | MS.gene64412:CDS |
| CTCCGGTAGAAGTTACTGAT+TGG | 0.487585 | 2.1:-49283688 | None:intergenic |
| AACAAGAGAAAGTTTCGGCT+TGG | 0.490058 | 2.1:+49282231 | MS.gene64412:CDS |
| GTTTCGGCTTGGACTATGAA+AGG | 0.499304 | 2.1:+49282242 | MS.gene64412:CDS |
| ACATCTTCATAGATGCTCTC+TGG | 0.512638 | 2.1:-49282314 | None:intergenic |
| TACTAGTGAGTGGGAAGCGA+AGG | 0.513438 | 2.1:+49282361 | MS.gene64412:CDS |
| TTGAGACTGGAAGAATTAAG+AGG | 0.513982 | 2.1:+49282612 | MS.gene64412:CDS |
| CCACAGATCATCCTTCTCAA+TGG | 0.525270 | 2.1:-49282534 | None:intergenic |
| AGCCAATCAGTAACTTCTAC+CGG | 0.533645 | 2.1:+49283686 | MS.gene64412:CDS |
| CAACGATCACCGACATCGAA+CGG | 0.535380 | 2.1:-49283349 | None:intergenic |
| CAGAAGATCAGAATTAGTCC+TGG | 0.539463 | 2.1:+49284264 | MS.gene64412:CDS |
| TTTGATGGAGATGGCGGAGA+CGG | 0.555408 | 2.1:+49282091 | None:intergenic |
| GAACTTCTTGAGGCAGAAGA+TGG | 0.566392 | 2.1:-49284324 | None:intergenic |
| GTGATGCATCCGTTCGATGT+CGG | 0.566606 | 2.1:+49283340 | MS.gene64412:CDS |
| TAATGAAATTACTAGTGAGT+GGG | 0.578329 | 2.1:+49282352 | MS.gene64412:CDS |
| GAAGTCTCTTAAGAACTGGC+TGG | 0.578390 | 2.1:+49282634 | MS.gene64412:CDS |
| GTACAAGTGATCGACGCTCT+AGG | 0.579348 | 2.1:-49283108 | None:intergenic |
| TTGTTCTGTCCATTATTGTG+TGG | 0.581175 | 2.1:+49283194 | MS.gene64412:CDS |
| CTGCCTCAAGAAGTTCGTCT+CGG | 0.586613 | 2.1:+49284331 | MS.gene64412:CDS |
| AATCGCTCATTTCGGGACTC+CGG | 0.590354 | 2.1:-49283705 | None:intergenic |
| AATCATCAGGTCCATTGAGA+AGG | 0.591188 | 2.1:+49282523 | MS.gene64412:intron |
| TGGTTTGAACGCCAGTGTTG+AGG | 0.594670 | 2.1:-49284142 | None:intergenic |
| ATGGAGATGGCGGAGACGGT+AGG | 0.595526 | 2.1:+49282095 | None:intergenic |
| TATCCTTAACTATTACATTG+TGG | 0.599567 | 2.1:-49284162 | None:intergenic |
| ACACAATAATGGACAGAACA+AGG | 0.603608 | 2.1:-49283192 | None:intergenic |
| ATAATGAAATTACTAGTGAG+TGG | 0.604878 | 2.1:+49282351 | MS.gene64412:CDS |
| TCAACGTCTTGAAACTAAGT+CGG | 0.611336 | 2.1:-49282136 | None:intergenic |
| CAAGGACAATTGCAGAAGCA+AGG | 0.614267 | 2.1:-49283174 | None:intergenic |
| GTAGGTAAGAGTTCGAGTAG+AGG | 0.624001 | 2.1:+49282113 | MS.gene64412:CDS |
| TGACCGAGACGAACTTCTTG+AGG | 0.626651 | 2.1:-49284334 | None:intergenic |
| ACAAGAACAAGTCATTGATG+TGG | 0.631286 | 2.1:+49282190 | MS.gene64412:CDS |
| TGGTAGACAATCCAGAACTC+CGG | 0.648538 | 2.1:-49282280 | None:intergenic |
| TGGAGAATAGGCCTCAACAC+TGG | 0.648812 | 2.1:+49284131 | MS.gene64412:CDS |
| GCTCTCTGGTGTATAGCTGA+TGG | 0.661232 | 2.1:-49282300 | None:intergenic |
| CCATTGAGAAGGATGATCTG+TGG | 0.670313 | 2.1:+49282534 | MS.gene64412:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACATATAATAAATGTATT+AGG | - | chr2.1:49283568-49283587 | None:intergenic | 10.0% |
| !! | AATATTCCAAAAGTTTCAAA+AGG | - | chr2.1:49282910-49282929 | None:intergenic | 20.0% |
| !! | AATCTCAAATTGGTATAATA+AGG | - | chr2.1:49283948-49283967 | None:intergenic | 20.0% |
| !! | ATAAACATTTATTCATTCGA+TGG | - | chr2.1:49284051-49284070 | None:intergenic | 20.0% |
| !! | CTGCTATATTAATGATATAA+AGG | - | chr2.1:49283534-49283553 | None:intergenic | 20.0% |
| !! | GAAAAAATATACATGTTGAA+AGG | - | chr2.1:49282990-49283009 | None:intergenic | 20.0% |
| !! | TCATATACTTGATTATCTTA+TGG | - | chr2.1:49282948-49282967 | None:intergenic | 20.0% |
| !! | TTTCTAAATCAATCTCAAAT+TGG | - | chr2.1:49283958-49283977 | None:intergenic | 20.0% |
| !!! | AAATTGATAAATATCGACTT+AGG | + | chr2.1:49283878-49283897 | MS.gene64412:intron | 20.0% |
| !!! | ATTTGAGATTGATTTAGAAA+CGG | + | chr2.1:49283958-49283977 | MS.gene64412:intron | 20.0% |
| !!! | CTATTTTCTCAATCTATTTT+CGG | + | chr2.1:49282793-49282812 | MS.gene64412:intron | 20.0% |
| ! | AAACAACGCGATTAAATTAA+TGG | + | chr2.1:49283902-49283921 | MS.gene64412:intron | 25.0% |
| ! | AAACCACAATGTAATAGTTA+AGG | + | chr2.1:49284159-49284178 | MS.gene64412:CDS | 25.0% |
| ! | AAGGATTGATTAATGTTATC+CGG | + | chr2.1:49282261-49282280 | MS.gene64412:CDS | 25.0% |
| ! | AATGAAACAAGAGAAAGTTT+CGG | + | chr2.1:49282226-49282245 | MS.gene64412:CDS | 25.0% |
| ! | ATAATGAAATTACTAGTGAG+TGG | + | chr2.1:49282351-49282370 | MS.gene64412:CDS | 25.0% |
| ! | ATTAGAGATAATGAGAAGAA+AGG | + | chr2.1:49282158-49282177 | MS.gene64412:CDS | 25.0% |
| ! | CATATACTATTAATGTTTGC+AGG | + | chr2.1:49283075-49283094 | MS.gene64412:intron | 25.0% |
| ! | GAATGTAAACAAGATGAAAA+TGG | + | chr2.1:49284189-49284208 | MS.gene64412:CDS | 25.0% |
| ! | TAATGAAATTACTAGTGAGT+GGG | + | chr2.1:49282352-49282371 | MS.gene64412:CDS | 25.0% |
| ! | TATCCTTAACTATTACATTG+TGG | - | chr2.1:49284165-49284184 | None:intergenic | 25.0% |
| ! | TTAGAGATAATGAGAAGAAA+GGG | + | chr2.1:49282159-49282178 | MS.gene64412:CDS | 25.0% |
| !! | GAGCATTTTTATACTTTCTA+TGG | + | chr2.1:49282873-49282892 | MS.gene64412:intron | 25.0% |
| !! | GGTATAATTCTGAAAGTTTA+TGG | - | chr2.1:49284233-49284252 | None:intergenic | 25.0% |
| !! | TCTACTTCAATAGAAAGTAT+TGG | + | chr2.1:49283751-49283770 | MS.gene64412:CDS | 25.0% |
| !! | TGATTTAGATTCATTTTCTC+TGG | + | chr2.1:49282467-49282486 | MS.gene64412:intron | 25.0% |
| !!! | ATGATTCCTTTTGAAACTTT+TGG | + | chr2.1:49282901-49282920 | MS.gene64412:intron | 25.0% |
| !!! | ATGTTTTTAATCTGAAGTGT+TGG | - | chr2.1:49282710-49282729 | None:intergenic | 25.0% |
| ATAACATGTTTGCAGATACT+TGG | + | chr2.1:49284111-49284130 | MS.gene64412:intron | 30.0% | |
| ATAGAAGTGATTGAATGTGT+TGG | - | chr2.1:49282777-49282796 | None:intergenic | 30.0% | |
| ATGAATCTAAATCACATTGC+AGG | - | chr2.1:49282461-49282480 | None:intergenic | 30.0% | |
| GCTACAATCATTTATATTGC+AGG | + | chr2.1:49283418-49283437 | MS.gene64412:intron | 30.0% | |
| TGAATCTAAATCACATTGCA+GGG | - | chr2.1:49282460-49282479 | None:intergenic | 30.0% | |
| TGATGATTTCAACGGTTAAA+CGG | - | chr2.1:49282511-49282530 | None:intergenic | 30.0% | |
| TGGTATAATAAGGTGACTAA+AGG | - | chr2.1:49283938-49283957 | None:intergenic | 30.0% | |
| TTAGTTGCAAGAACTGAATT+TGG | - | chr2.1:49283667-49283686 | None:intergenic | 30.0% | |
| ! | AAGGTTATATCGATTAACCA+TGG | - | chr2.1:49283515-49283534 | None:intergenic | 30.0% |
| ! | CTGCAATATAAAGGATTTTG+AGG | - | chr2.1:49283478-49283497 | None:intergenic | 30.0% |
| ! | TTGAAGCTTAAATGCAGTTT+TGG | - | chr2.1:49284020-49284039 | None:intergenic | 30.0% |
| !!! | AATTTGCTTCCACTTTTTGA+AGG | + | chr2.1:49282584-49282603 | MS.gene64412:CDS | 30.0% |
| !!! | AGATTCATTTTCTCTGGAAT+TGG | + | chr2.1:49282473-49282492 | MS.gene64412:intron | 30.0% |
| !!! | CGCTTTTAATCTAGTTTTCA+AGG | - | chr2.1:49283779-49283798 | None:intergenic | 30.0% |
| AATCGCAGTCTGCAATATAA+AGG | - | chr2.1:49283487-49283506 | None:intergenic | 35.0% | |
| AATGGACCTGATGATTTCAA+CGG | - | chr2.1:49282519-49282538 | None:intergenic | 35.0% | |
| ACAAAATCTTACTTGCTTCC+TGG | - | chr2.1:49282422-49282441 | None:intergenic | 35.0% | |
| ACAAGAACAAGTCATTGATG+TGG | + | chr2.1:49282190-49282209 | MS.gene64412:CDS | 35.0% | |
| ATTAATGTTATCCGGAGTTC+TGG | + | chr2.1:49282269-49282288 | MS.gene64412:CDS | 35.0% | |
| GTTTAACCGTTGAAATCATC+AGG | + | chr2.1:49282510-49282529 | MS.gene64412:intron | 35.0% | |
| TCAACGTCTTGAAACTAAGT+CGG | - | chr2.1:49282139-49282158 | None:intergenic | 35.0% | |
| TTACTTGTGGTGTTTGTGTT+TGG | + | chr2.1:49283274-49283293 | MS.gene64412:CDS | 35.0% | |
| TTCAACAGAATCGCTCATTT+CGG | - | chr2.1:49283716-49283735 | None:intergenic | 35.0% | |
| TTGAGACTGGAAGAATTAAG+AGG | + | chr2.1:49282612-49282631 | MS.gene64412:CDS | 35.0% | |
| TTGTTCTGTCCATTATTGTG+TGG | + | chr2.1:49283194-49283213 | MS.gene64412:CDS | 35.0% | |
| TTTGCAGATACTTGGAGAAT+AGG | + | chr2.1:49284119-49284138 | MS.gene64412:intron | 35.0% | |
| ! | ACATTGCAGGGAGATTTTAA+AGG | - | chr2.1:49282448-49282467 | None:intergenic | 35.0% |
| ! | CAAAGATTTTCTTCAACTCC+AGG | - | chr2.1:49284285-49284304 | None:intergenic | 35.0% |
| ! | CAATTCATCAACAGCTGTTT+TGG | - | chr2.1:49283149-49283168 | None:intergenic | 35.0% |
| ! | CATTGCAGGGAGATTTTAAA+GGG | - | chr2.1:49282447-49282466 | None:intergenic | 35.0% |
| ! | GAGATTGATTTAGAAACGGA+GGG | + | chr2.1:49283962-49283981 | MS.gene64412:intron | 35.0% |
| ! | GTTCAGGTAGTTTTCAATTG+TGG | + | chr2.1:49283385-49283404 | MS.gene64412:intron | 35.0% |
| ! | TGAGATTGATTTAGAAACGG+AGG | + | chr2.1:49283961-49283980 | MS.gene64412:intron | 35.0% |
| ! | TTCATCACAGCTTTTACTTG+TGG | + | chr2.1:49283261-49283280 | MS.gene64412:CDS | 35.0% |
| !! | ACACAATAATGGACAGAACA+AGG | - | chr2.1:49283195-49283214 | None:intergenic | 35.0% |
| AACAAGAGAAAGTTTCGGCT+TGG | + | chr2.1:49282231-49282250 | MS.gene64412:CDS | 40.0% | |
| AACAAGCAGCCACACAATAA+TGG | - | chr2.1:49283206-49283225 | None:intergenic | 40.0% | |
| AATCATCAGGTCCATTGAGA+AGG | + | chr2.1:49282523-49282542 | MS.gene64412:intron | 40.0% | |
| ACATCTTCATAGATGCTCTC+TGG | - | chr2.1:49282317-49282336 | None:intergenic | 40.0% | |
| AGAGGAAGTCTCTTAAGAAC+TGG | + | chr2.1:49282630-49282649 | MS.gene64412:CDS | 40.0% | |
| AGCCAATCAGTAACTTCTAC+CGG | + | chr2.1:49283686-49283705 | MS.gene64412:CDS | 40.0% | |
| CAGAAGATCAGAATTAGTCC+TGG | + | chr2.1:49284264-49284283 | MS.gene64412:CDS | 40.0% | |
| TCAACAGAATCGCTCATTTC+GGG | - | chr2.1:49283715-49283734 | None:intergenic | 40.0% | |
| TCAACTGCTCCTTCAAAAAG+TGG | - | chr2.1:49282596-49282615 | None:intergenic | 40.0% | |
| TGATCTTCTGCTGCTCTTAT+CGG | - | chr2.1:49284254-49284273 | None:intergenic | 40.0% | |
| ! | CAGACTGCGATTTTAAACCA+TGG | + | chr2.1:49283495-49283514 | MS.gene64412:intron | 40.0% |
| ! | TATTGTGTGGCTGCTTGTTA+TGG | + | chr2.1:49283207-49283226 | MS.gene64412:CDS | 40.0% |
| ! | TCCTCGTGTTTTATCCAATC+CGG | - | chr2.1:49283997-49284016 | None:intergenic | 40.0% |
| !! | ATTGTGTGGCTGCTTGTTAT+GGG | + | chr2.1:49283208-49283227 | MS.gene64412:CDS | 40.0% |
| !! | TTGTGTCATTGATGGTGTTC+AGG | + | chr2.1:49283369-49283388 | MS.gene64412:CDS | 40.0% |
| AAACGGAGGGATCAAATTCC+CGG | + | chr2.1:49283975-49283994 | MS.gene64412:intron | 45.0% | |
| AAGTTCGTCTCGGTCATGTT+AGG | + | chr2.1:49284341-49284360 | MS.gene64412:CDS | 45.0% | |
| AATCACACCGAACTTGACAC+CGG | - | chr2.1:49282835-49282854 | None:intergenic | 45.0% | |
| CAAGGACAATTGCAGAAGCA+AGG | - | chr2.1:49283177-49283196 | None:intergenic | 45.0% | |
| CCACAGATCATCCTTCTCAA+TGG | - | chr2.1:49282537-49282556 | None:intergenic | 45.0% | |
| CCATTGAGAAGGATGATCTG+TGG | + | chr2.1:49282534-49282553 | MS.gene64412:CDS | 45.0% | |
| CGGTGTCTACATATCAGTTC+CGG | + | chr2.1:49282813-49282832 | MS.gene64412:intron | 45.0% | |
| CTCCGGTAGAAGTTACTGAT+TGG | - | chr2.1:49283691-49283710 | None:intergenic | 45.0% | |
| GAACTTCTTGAGGCAGAAGA+TGG | - | chr2.1:49284327-49284346 | None:intergenic | 45.0% | |
| GAAGTCTCTTAAGAACTGGC+TGG | + | chr2.1:49282634-49282653 | MS.gene64412:CDS | 45.0% | |
| GTAGGTAAGAGTTCGAGTAG+AGG | + | chr2.1:49282113-49282132 | MS.gene64412:CDS | 45.0% | |
| TGGTAGACAATCCAGAACTC+CGG | - | chr2.1:49282283-49282302 | None:intergenic | 45.0% | |
| TGTCAGATACATACACGTGC+TGG | - | chr2.1:49282743-49282762 | None:intergenic | 45.0% | |
| TTCAGGAATGTTGCTAAGCC+AGG | + | chr2.1:49282401-49282420 | MS.gene64412:CDS | 45.0% | |
| TTTGAAGGAGCAGTTGAGAC+TGG | + | chr2.1:49282599-49282618 | MS.gene64412:CDS | 45.0% | |
| ! | ATCAGTTCCGGTGTCAAGTT+CGG | + | chr2.1:49282825-49282844 | MS.gene64412:intron | 45.0% |
| ! | CAGCTGCGTATCGAATTTTC+AGG | + | chr2.1:49282384-49282403 | MS.gene64412:CDS | 45.0% |
| ! | CCTCGTGTTTTATCCAATCC+GGG | - | chr2.1:49283996-49284015 | None:intergenic | 45.0% |
| ! | GGTGATCGTTGTGTCATTGA+TGG | + | chr2.1:49283361-49283380 | MS.gene64412:CDS | 45.0% |
| !! | GTTTCGGCTTGGACTATGAA+AGG | + | chr2.1:49282242-49282261 | MS.gene64412:CDS | 45.0% |
| AATCGCTCATTTCGGGACTC+CGG | - | chr2.1:49283708-49283727 | None:intergenic | 50.0% | |
| CAACGATCACCGACATCGAA+CGG | - | chr2.1:49283352-49283371 | None:intergenic | 50.0% | |
| CTGCCTCAAGAAGTTCGTCT+CGG | + | chr2.1:49284331-49284350 | MS.gene64412:CDS | 50.0% | |
| GAGGGATCAAATTCCCGGAT+TGG | + | chr2.1:49283980-49283999 | MS.gene64412:intron | 50.0% | |
| GCTCTCTGGTGTATAGCTGA+TGG | - | chr2.1:49282303-49282322 | None:intergenic | 50.0% | |
| GTACAAGTGATCGACGCTCT+AGG | - | chr2.1:49283111-49283130 | None:intergenic | 50.0% | |
| GTGATGCATCCGTTCGATGT+CGG | + | chr2.1:49283340-49283359 | MS.gene64412:CDS | 50.0% | |
| TACTAGTGAGTGGGAAGCGA+AGG | + | chr2.1:49282361-49282380 | MS.gene64412:CDS | 50.0% | |
| TGACCGAGACGAACTTCTTG+AGG | - | chr2.1:49284337-49284356 | None:intergenic | 50.0% | |
| TGGAGAATAGGCCTCAACAC+TGG | + | chr2.1:49284131-49284150 | MS.gene64412:CDS | 50.0% | |
| TGGTTTGAACGCCAGTGTTG+AGG | - | chr2.1:49284145-49284164 | None:intergenic | 50.0% | |
| ! | CCCGGATTGGATAAAACACG+AGG | + | chr2.1:49283993-49284012 | MS.gene64412:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 49282101 | 49284381 | 49282101 | ID=MS.gene64412 |
| chr2.1 | mRNA | 49282101 | 49284381 | 49282101 | ID=MS.gene64412.t1;Parent=MS.gene64412 |
| chr2.1 | exon | 49282101 | 49282429 | 49282101 | ID=MS.gene64412.t1.exon1;Parent=MS.gene64412.t1 |
| chr2.1 | CDS | 49282101 | 49282429 | 49282101 | ID=cds.MS.gene64412.t1;Parent=MS.gene64412.t1 |
| chr2.1 | exon | 49282532 | 49282655 | 49282532 | ID=MS.gene64412.t1.exon2;Parent=MS.gene64412.t1 |
| chr2.1 | CDS | 49282532 | 49282655 | 49282532 | ID=cds.MS.gene64412.t1;Parent=MS.gene64412.t1 |
| chr2.1 | exon | 49283097 | 49283390 | 49283097 | ID=MS.gene64412.t1.exon3;Parent=MS.gene64412.t1 |
| chr2.1 | CDS | 49283097 | 49283390 | 49283097 | ID=cds.MS.gene64412.t1;Parent=MS.gene64412.t1 |
| chr2.1 | exon | 49283595 | 49283797 | 49283595 | ID=MS.gene64412.t1.exon4;Parent=MS.gene64412.t1 |
| chr2.1 | CDS | 49283595 | 49283797 | 49283595 | ID=cds.MS.gene64412.t1;Parent=MS.gene64412.t1 |
| chr2.1 | exon | 49284126 | 49284381 | 49284126 | ID=MS.gene64412.t1.exon5;Parent=MS.gene64412.t1 |
| chr2.1 | CDS | 49284126 | 49284381 | 49284126 | ID=cds.MS.gene64412.t1;Parent=MS.gene64412.t1 |
| Gene Sequence |
| Protein sequence |