AlfalfaGEDB | MS.gene64829

M. sativa cultivar XinJiangDaYe / MS.gene64829

KEGG: -
GO: -
PFAM: PF07884.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64829.t1	AES95230.1	92.4	357	21	2	1	356	1	352	1.30E-176	629

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64829.t1	Q8L540	59.2	267	108	1	84	350	100	365	5.0e-84	312.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64829.t1	G7JYT3	92.4	357	21	2	1	356	1	352	9.5e-177	629.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050170	MS.gene64829	0.80337	3.60E-49	-1.69E-46
MS.gene050577	MS.gene64829	0.81067	1.03E-50	-1.69E-46
MS.gene050904	MS.gene64829	0.820969	5.18E-53	-1.69E-46
MS.gene052100	MS.gene64829	0.804255	2.36E-49	-1.69E-46
MS.gene052494	MS.gene64829	-0.843073	1.75E-58	-1.69E-46
MS.gene053097	MS.gene64829	-0.81183	5.75E-51	-1.69E-46
MS.gene053218	MS.gene64829	-0.809932	1.48E-50	-1.69E-46
MS.gene05470	MS.gene64829	0.850834	1.31E-60	-1.69E-46
MS.gene055251	MS.gene64829	-0.806769	7.00E-50	-1.69E-46
MS.gene055729	MS.gene64829	-0.800292	1.54E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64829.t1	MTR_5g023180	92.437	357	21	2	1	356	1	352	0.0	584
MS.gene64829.t1	MTR_5g023180	90.476	357	27	3	1	356	1	351	0.0	580
MS.gene64829.t1	MTR_5g023180	88.194	288	27	3	1	287	1	282	1.66e-153	433
MS.gene64829.t1	MTR_5g023180	88.983	236	20	2	1	235	1	231	4.29e-122	351

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64829.t1	AT4G35760	58.631	336	113	5	41	354	37	368	1.15e-130	379
MS.gene64829.t1	AT4G35760	58.413	315	106	4	41	333	37	348	3.77e-121	355

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Find 96 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGAAGGTTTCCCCACA+TGG	0.537433	5.1:+13991971	MS.gene64829:CDS
AACTTCTCGATACAGATGTT+TGG	0.404936	5.1:+13991856	MS.gene64829:intron
AAGCAATACTAATTGAGCAT+TGG	0.514041	5.1:-13989854	None:intergenic
AAGCTAATCTCAGGAATCGC+CGG	0.538082	5.1:+13988886	MS.gene64829:CDS
AATGCTCAATTAGTATTGCT+TGG	0.431355	5.1:+13989856	MS.gene64829:CDS
ACAAAGAAGAATTTACCTTT+TGG	0.320249	5.1:+13989820	MS.gene64829:CDS
ACAAAGGGTTCGGTCTGGGT+TGG	0.532809	5.1:-13988774	None:intergenic
ACAAGAATTGTCACCTTCAG+AGG	0.535413	5.1:+13988797	MS.gene64829:CDS
ACAGATGTTTGGACGTGAGG+CGG	0.647976	5.1:+13991867	MS.gene64829:intron
ACCTCTTCCTTTGATTGGGA+TGG	0.417711	5.1:+13989756	MS.gene64829:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCCTCAATAAAATGCC+GGG	-	chr5.1:13990894-13990913	None:intergenic	30.0%
AACATAAGACATTCTTTACC+TGG	-	chr5.1:13992008-13992027	None:intergenic	30.0%
AAGCAATACTAATTGAGCAT+TGG	-	chr5.1:13989857-13989876	None:intergenic	30.0%
AATGCTCAATTAGTATTGCT+TGG	+	chr5.1:13989856-13989875	MS.gene64829:CDS	30.0%
ACTTGTATAATGTCATCACA+TGG	+	chr5.1:13990948-13990967	MS.gene64829:intron	30.0%
ATCCTTCAAAATTTGGTCAT+AGG	-	chr5.1:13990863-13990882	None:intergenic	30.0%
ATTACATTTGCATCTCTTTC+AGG	+	chr5.1:13992081-13992100	MS.gene64829:intron	30.0%
ATTGATGCTAGTATTTCACT+AGG	+	chr5.1:13990302-13990321	MS.gene64829:intron	30.0%
CAAAATCCTCAATAAAATGC+CGG	-	chr5.1:13990895-13990914	None:intergenic	30.0%
CAAACATTCAACTGAAAGAA+GGG	-	chr5.1:13990586-13990605	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	13988694	13992177	13988694	ID=MS.gene64829
chr5.1	mRNA	13988694	13992177	13988694	ID=MS.gene64829.t1;Parent=MS.gene64829
chr5.1	exon	13988694	13989030	13988694	ID=MS.gene64829.t1.exon1;Parent=MS.gene64829.t1
chr5.1	CDS	13988694	13989030	13988694	ID=cds.MS.gene64829.t1;Parent=MS.gene64829.t1
chr5.1	exon	13989752	13990011	13989752	ID=MS.gene64829.t1.exon2;Parent=MS.gene64829.t1
chr5.1	CDS	13989752	13990011	13989752	ID=cds.MS.gene64829.t1;Parent=MS.gene64829.t1
chr5.1	exon	13990108	13990217	13990108	ID=MS.gene64829.t1.exon3;Parent=MS.gene64829.t1
chr5.1	CDS	13990108	13990217	13990108	ID=cds.MS.gene64829.t1;Parent=MS.gene64829.t1
chr5.1	exon	13991152	13991302	13991152	ID=MS.gene64829.t1.exon4;Parent=MS.gene64829.t1
chr5.1	CDS	13991152	13991302	13991152	ID=cds.MS.gene64829.t1;Parent=MS.gene64829.t1
chr5.1	exon	13991871	13992008	13991871	ID=MS.gene64829.t1.exon5;Parent=MS.gene64829.t1
chr5.1	CDS	13991871	13992008	13991871	ID=cds.MS.gene64829.t1;Parent=MS.gene64829.t1
chr5.1	exon	13992103	13992177	13992103	ID=MS.gene64829.t1.exon6;Parent=MS.gene64829.t1
chr5.1	CDS	13992103	13992177	13992103	ID=cds.MS.gene64829.t1;Parent=MS.gene64829.t1

Gene Sequence

>MS.gene64829

ATGGCCACCTTCACTGTTACAACACTATCACCTTCCTCTTCTCGTTTCTTCGCACCGGTTCGTTTAAACCGTTCTCCGAACCAACCCAGACCGAACCCTTTGTACAAGAATTGTCACCTTCAGAGGTTTCCACCTCTGAAATGCTCCTCTTCATCTTCGGAACCAGAAACCTCCTCAACTGATTGGACCTATAAGCTAATCTCAGGAATCGCCGGAATCGGATTCATCGAAACCTCGTACCTTGCTTACCTTAAGTTCACCGGCTCCGATGTCTTCTGCCCTGTCGGCGGTGGCACTTGCTCCAATATACTCAATAGTGATTACGCCGTCGTTTTTGGTATCGTCTATTTCCTTAACTAACTAACTAATTTGTAACTAACTTCTATGCATTTTATTTGTATGTAGTGTTCGTTATTTATTAATTAATTAAGTGCTTATAGCATAACCATTTATCATAGAACTGGTTGCTTATGAGTCATTTTATGTAACGAAAGTCAAATTGTTTTCATATAAGTTGTAAGCTGTTTTCATTAGTTATCCTAGAGAGCTTAGAAATAAGCTGCAACGTATGGACTCGGTATTTGGTTAGCCACTCCCAGCAAATTATGGCCATTTATGAGCTATCACAATTGCCTATATAAGTAGATAATATCAAATAAGTTAATTCAAACTGTTCTTAATTATGACGCAACGCCTATGCACCGGTAATAATTTGTGAAAATAGAAATGATTGTACATAATTACATTTGTTTGTGTCATGCCCGTGTCAGACACCGATATGTATTGTGTTGGTGTCAAACACTAATGCATGTTGGATACTCACACACCTTCAATTGCAAGTTTAGTGCTACGTGGTCATTTATAACATGCCTTTAAGTTTTAAATAACTATGCTTATTTTATTGAATACACAGTGTTGAGTTGTGATTGGAGAATGATAAAAATTTGACATATAGAACATCACCTATGTTTTATTTGATGCTTTTGTTTTTGCTGTTATGTATTGCACAAATTGTGTTTGAAATATTGTGTTAATGAAAGTGGTTTTGCATCTGGCAGGTGTACCTCTTCCTTTGATTGGGATGGCTGCGTATAGTTTTGTAGCTGCTCTTAGTCTTCAGTTAGCTACAAAGAAGAATTTACCTTTTGGGGTTAACAGATCCAATGCTCAATTAGTATTGCTTGGAAGCACAACCTCAATGGCAACTGCTAGTGCTTATTTTTTGTACATTCTAACCACAGCGTTTCCTGAATCATCTTGCTCCTATTGCCTACTTTCGGTTCTCTTGTCCTTTTCGTTATTCATTCTCACACTCAAGGTGTTCAATGTTAAAAAAACTTTTATTGTCCAACTTTTTCTATTTCCTTTTTGTGTCGCTGCGTAATTGATACCCTTTTTGAAATTTCCATTTTAGGACATTGGATTGCAAGAGAATTACAAACAACTGGGTTTGCAGTTGTTTATTGCTAGCTTGGTGATTCTTACATTGAACACCTCCTATAGCAGTGCTAAATCTACCTCAAGGTGAATATTATTGTATAGCACATATATAATGTTCAATCGCTTCATTTTTTTTACTGTATAATTCAATTGTTTTGTCACTCGTCAATTGATGCTAGTATTTCACTAGGTTGAACAAATTTAAGGTATATTTTTTCTTTCATGAGATTTTACATTCAGGCTTATAGCTCATGGCTAATATTTTCTTATCCAATATTCCTTTTTTCTAAGCTGCTTTCAGTTTTATTCATGTTGACTTCGATATGACATCGGTAGAATGTATTTAATCTGGCGATGAACATTTTGCACTGCCTTCATGTATTTTTTGTGCTTTATAACAGAGACCTTTGTTAGTAATAACTTCCCCTTTGCTTACTCCCTTATCCCATCCCTTCTTTCAGTTGAATGTTTGCAAAGTCCGAACTCACCGTGTTAAGCATAATTAACTCCTGCTGAGTCGAGAATTGTAAGATCAGTCAAGCAGGCTAGTCAAGTAGTCCTGTAAAAGCCTTAAAGAAAAAAGTGTAGTGGATTTGGCACAAATAATAGCAAATGGAAATGGCAACCCTCAAGTAGTTTTGATAATGTAATTAACTAGTACAAATGTTGTCAAATAGTGGCGATGGCGCGCCATGGCTGATTGTGGTGACAGATTTTTCACCAACGCCTATGACCAAATTTTGAAGGATGGCAGCACCCCGGCATTTTATTGAGGATTTTGGCTTTCTGCCACGGTCCTCTATCAATAACCCTGACTTGTATAATGTCATCACATGGAACTGAAATATTATACGCGAGATATTGACTTGATGAATACCTACAGAATTTTATTCATCGCCATTATGTGGCAGTTAGTTAGCTTTGGTTTTCTTATTCCTATCAGAGATTGAAGTTAGGTGAATGACTATGCTTGTGAGATACAATTTTAAATTCACAATTTTTTTGATGTCTACTTTAGCAGCATGGCTAAAATTGAGCTGCCATATTTTGCAACCGAGATTACAACTCCATCAAGCCCCTTTGCTTTGTCTCTAGCAAGGTATTTGCATTCAATAGGAGCTAAAATGTATGGAGCTTTCTGGTGTTCACACTGTCTGGAACAAAAAGAGGTATGTGATTACTTACAATTCATTTTGAAAAGTTTAGCCTTACTAAGTGCCTGTTTGTTAACACGGTGGGATACCCACCAAACCGAGTTTTGACCAACTCTACAATTTCAAGCTTCTTAAAATCACGGTGGGATGTGCATTGGGAATCGTTTTTCAACACAAAAAAGCTAAACCAAACACATGCTAAGTGGAACAATAATCATCATGATCTATGACTACGTCTTTTATTTGTTTTTGATAGAATTACCATAACTTTAGTTTGTGTTATATCAAAGTAGTTATCAAAATCAAACTTCAGGAATGTATCTTTCAAAAAAGGACTCACTCTCTCATGGCTACTCCTTGTGAGGATATTGCCTTGGTTTCAATTGGATTCGTATATTTGGCTGTTTACTTCTTCAAACAAACTTTTCTTGTTCTGCTCAGTCATCTAATTCCTCTGCTATAGCCTATAGGCATATCACAGTAGAGTAACTTCATTTTATTTTTTCAACCTATTTTTCTATTCTTGGTAATCTTGTCTAACATGTCTTCGAGTACAATTATTCACTTTAACTTCTCGATACAGATGTTTGGACGTGAGGCGGCGAAGCAATTGGATTACGTGGAATGTTTTCCTGACGGATATCGAACAGGAACTAAAATGATCGATGCATGCTTAGACGCTAAAATTGAAGGTTTCCCCACATGGATTATTAATGGCCAGGTAAAGAATGTCTTATGTTGTTAACTAAAACTGTGAACCTCTCTTCTCTTCTCACAAATTTGATTTGATTTCATTACATTTGCATCTCTTTCAGGTTCTGAGTGGTGAAGTGGAATTATCGGAGTTGGCACAAGCATCTGGTTACAGTGAATTTGATCAACCTAGTTAA

Protein sequence

>MS.gene64829.t1

MATFTVTTLSPSSSRFFAPVRLNRSPNQPRPNPLYKNCHLQRFPPLKCSSSSSEPETSSTDWTYKLISGIAGIGFIETSYLAYLKFTGSDVFCPVGGGTCSNILNSDYAVVFGVPLPLIGMAAYSFVAALSLQLATKKNLPFGVNRSNAQLVLLGSTTSMATASAYFLYILTTAFPESSCSYCLLSVLLSFSLFILTLKDIGLQENYKQLGLQLFIASLVILTLNTSYSSAKSTSSSMAKIELPYFATEITTPSSPFALSLARYLHSIGAKMYGAFWCSHCLEQKEMFGREAAKQLDYVECFPDGYRTGTKMIDACLDAKIEGFPTWIINGQVLSGEVELSELAQASGYSEFDQPS