AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64849

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64849.t1 MTR_5g023580 95.714 280 12 0 1 280 1 280 0.0 516
MS.gene64849.t1 MTR_5g023320 82.927 287 41 4 1 286 1 280 3.82e-161 453
MS.gene64849.t1 MTR_5g023350 81.469 286 49 2 1 286 1 282 4.21e-161 453
MS.gene64849.t1 MTR_5g023340 81.119 286 50 2 1 286 1 282 3.39e-159 448
MS.gene64849.t1 MTR_5g023390 80.420 286 52 2 1 286 1 282 6.50e-158 445
MS.gene64849.t1 MTR_5g023600 80.420 286 52 2 1 286 1 282 1.29e-156 442
MS.gene64849.t1 MTR_5g023370 79.021 286 56 2 1 286 1 282 1.01e-155 439
MS.gene64849.t1 MTR_5g023520 80.357 280 51 2 1 280 1 276 6.14e-154 435
MS.gene64849.t1 MTR_5g023530 78.397 287 57 3 1 286 1 283 9.37e-152 429
MS.gene64849.t1 MTR_5g023550 77.972 286 58 3 1 286 1 281 3.74e-150 425
MS.gene64849.t1 MTR_5g023470 77.352 287 60 3 1 286 1 283 2.15e-149 423
MS.gene64849.t1 MTR_8g074450 65.614 285 96 1 4 286 3 287 6.33e-128 369
MS.gene64849.t1 MTR_8g074510 62.898 283 101 2 6 286 5 285 6.33e-123 356
MS.gene64849.t1 MTR_8g074420 63.986 286 101 1 3 286 2 287 1.22e-119 348
MS.gene64849.t1 MTR_5g023460 74.866 187 39 3 100 286 11 189 1.28e-91 273
MS.gene64849.t1 MTR_8g074530 41.637 281 160 3 3 280 17 296 3.16e-62 202
MS.gene64849.t1 MTR_5g023290 36.644 292 171 5 3 280 9 300 6.81e-52 175
MS.gene64849.t1 MTR_5g023410 85.859 99 14 0 3 101 2 100 1.91e-48 163
MS.gene64849.t1 MTR_4g070530 31.655 278 183 2 7 280 13 287 1.50e-43 153
MS.gene64849.t1 MTR_5g023650 32.982 285 177 4 8 280 14 296 1.50e-39 142
MS.gene64849.t1 MTR_8g074380 33.448 290 161 6 1 280 7 274 1.55e-38 140
MS.gene64849.t1 MTR_4g070540 31.159 276 187 3 7 280 13 287 7.56e-37 135
MS.gene64849.t1 MTR_4g070590 32.534 292 186 6 3 286 10 298 3.76e-36 133
MS.gene64849.t1 MTR_3g116950 33.217 286 172 9 5 280 11 287 3.80e-36 133
MS.gene64849.t1 MTR_4g070570 29.861 288 187 7 3 280 12 294 2.77e-34 129
MS.gene64849.t1 MTR_3g116920 30.420 286 182 9 5 280 11 289 4.54e-30 117
MS.gene64849.t1 MTR_3g115150 27.365 296 181 10 5 280 26 307 2.35e-22 96.7
MS.gene64849.t1 MTR_1g037820 27.706 231 143 6 52 280 9 217 2.35e-17 80.9
MS.gene64849.t1 MTR_5g023540 55.072 69 27 1 163 231 1 65 5.78e-16 72.4
MS.gene64849.t1 MTR_8g030800 59.494 79 27 3 280 354 2149 2226 1.53e-15 79.0
MS.gene64849.t1 MTR_7g077700 57.576 66 24 2 296 360 2168 2230 3.58e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64849.t1 AT4G35690 34.256 289 165 6 7 286 9 281 8.10e-49 166
MS.gene64849.t1 AT2G17080 34.420 276 156 5 5 280 4 254 1.51e-41 147
MS.gene64849.t1 AT2G17680 34.915 295 163 10 7 286 9 289 8.44e-41 145
MS.gene64849.t1 AT2G17070 35.145 276 154 5 5 280 4 254 2.99e-40 143
MS.gene64849.t1 AT4G35710 34.948 289 162 6 7 286 9 280 4.45e-39 141
MS.gene64849.t1 AT4G35200 32.624 282 158 8 5 286 4 253 4.38e-38 137
MS.gene64849.t1 AT4G35210 30.851 282 160 6 5 286 4 250 1.51e-35 130
MS.gene64849.t1 AT4G35720 31.674 221 136 6 6 215 14 230 3.15e-22 96.3
MS.gene64849.t1 AT1G76240 28.070 285 183 8 5 280 28 299 2.26e-20 90.9
MS.gene64849.t1 AT4G35680 34.872 195 113 4 8 194 18 206 1.03e-19 89.0
MS.gene64849.t1 AT4G35660 33.168 202 124 6 1 194 9 207 3.54e-19 87.0
MS.gene64849.t1 AT3G51400 29.825 285 169 10 5 280 4 266 1.72e-15 76.3
MS.gene64849.t1 AT3G51410 29.964 277 146 10 8 280 39 271 2.71e-12 67.0
MS.gene64849.t1 AT1G76210 25.105 239 156 7 48 286 8 223 1.15e-11 64.3

Find 75 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTGAACCTTCTCTTAAA+AGG 0.130949 5.1:-14227279 None:intergenic
AAACATATGGAAAGTAAATT+TGG 0.150071 5.1:+14227013 MS.gene64849:CDS
AAAGTCAGCACTACAATTTC+TGG 0.150234 5.1:+14228304 MS.gene64849:CDS
GGTTTCCCATGTCTTAATTT+TGG 0.219478 5.1:-14226648 None:intergenic
CGAGCTGCGAGATGGCTTAA+AGG 0.226558 5.1:+14228525 MS.gene64849:CDS
TGAAGATTTGTATATTTCTT+TGG 0.249422 5.1:+14226718 MS.gene64849:CDS
GTTGTTCGGCTACCCTTTCT+AGG 0.253804 5.1:+14228338 MS.gene64849:CDS
GGATGGTTCAGTGAAAATTT+TGG 0.269131 5.1:+14226817 MS.gene64849:CDS
GCAGTTGAAATGATAGAAAA+TGG 0.276517 5.1:+14227343 MS.gene64849:CDS
TGTTCTAATCTTGAGGTGTT+AGG 0.291169 5.1:-14226617 None:intergenic
AATCACATCTTTAAAACATA+TGG 0.341704 5.1:+14227000 MS.gene64849:CDS
GAGCTGCGAGATGGCTTAAA+GGG 0.384939 5.1:+14228526 MS.gene64849:CDS
GAAATTTGTTGAAGAGTTGT+TGG 0.385629 5.1:+14226796 MS.gene64849:CDS
CACTTCACTCTGCTCTTAGA+AGG 0.386439 5.1:+14226894 MS.gene64849:CDS
AATACAACAGGACAATGAAT+TGG 0.388858 5.1:+14228408 MS.gene64849:CDS
TCCTTGCTAGCAGCATTACT+TGG 0.389591 5.1:-14228481 None:intergenic
CTGACTTTAAAGAAATGAAT+TGG 0.391417 5.1:-14228289 None:intergenic
ATGGTTTGGAGAATGTATTC+AGG 0.393957 5.1:+14227362 MS.gene64849:CDS
CAACAAATTTCTCACCTTGA+CGG 0.400296 5.1:-14226784 None:intergenic
TGGCTTTAACTCCTGTTGTT+CGG 0.407314 5.1:+14228324 MS.gene64849:CDS
GGCTACCCTTTCTAGGAATC+CGG 0.412295 5.1:+14228345 MS.gene64849:CDS
CTAGGAATCCGGCTCTATCA+AGG 0.412883 5.1:+14228356 MS.gene64849:CDS
TGAAATGATAGAAAATGGTT+TGG 0.414105 5.1:+14227348 MS.gene64849:CDS
ATTTGAACCTTCTCTTAAAA+GGG 0.423698 5.1:-14227278 None:intergenic
GATGGCTTAAAGGGGCTGTA+AGG 0.435095 5.1:+14228535 MS.gene64849:CDS
ACGTGAAAGATTTGAGGCTT+TGG 0.459544 5.1:+14227315 MS.gene64849:CDS
AGAAAGGGTAGCCGAACAAC+AGG 0.465513 5.1:-14228335 None:intergenic
AACCAACCAAGAAAGACAAA+AGG 0.467726 5.1:-14227129 None:intergenic
AATCTCATGTGAAGAGAAGT+TGG 0.471471 5.1:+14227213 MS.gene64849:CDS
TAGCTCTTGTTCTAATCTTG+AGG 0.472026 5.1:-14226624 None:intergenic
CAATATGTCATCAACACAAA+AGG 0.479628 5.1:+14226751 MS.gene64849:CDS
ATGAATTGGAAATTGATCCT+TGG 0.483386 5.1:+14228422 MS.gene64849:CDS
ATAGAGCCGGATTCCTAGAA+AGG 0.493694 5.1:-14228351 None:intergenic
GGAGAATGTATTCAGGCGTA+TGG 0.499487 5.1:+14227369 MS.gene64849:CDS
ATCGCGGAAGTCAATACAAC+AGG 0.501355 5.1:+14228396 MS.gene64849:CDS
TTAAAGAAATGAATTGGTAC+AGG 0.504410 5.1:-14228283 None:intergenic
AATATACAAATCTTCAAGAA+AGG 0.505581 5.1:-14226711 None:intergenic
CTAGCAGCATTACTTGGAGA+AGG 0.510601 5.1:-14228475 None:intergenic
AGAAGGTTCAAATGTTTCAA+AGG 0.515818 5.1:+14227288 MS.gene64849:CDS
CTCTGCTCTTAGAAGGAGAA+AGG 0.522599 5.1:+14226901 MS.gene64849:CDS
GGATGCACGTGAAAGATTTG+AGG 0.524031 5.1:+14227309 MS.gene64849:CDS
TCTGCAACCCTTGATAGAGC+CGG 0.533540 5.1:-14228364 None:intergenic
TCCAAGTAATGCTGCTAGCA+AGG 0.533842 5.1:+14228480 MS.gene64849:CDS
AAGAAATGAATTGGTACAGG+TGG 0.537003 5.1:-14228280 None:intergenic
ACCAACCAAGAAAGACAAAA+GGG 0.538596 5.1:-14227128 None:intergenic
AAATGAATTGGTACAGGTGG+AGG 0.539800 5.1:-14228277 None:intergenic
TGGATATCTGCGGTATCACA+AGG 0.548494 5.1:+14226837 MS.gene64849:CDS
GAAAACTGTTTGAGCGAACA+TGG 0.549885 5.1:-14226580 None:intergenic
TTCAAGAAAGGAAAGGCCAT+TGG 0.551737 5.1:-14226699 None:intergenic
GGCAACCAAATGGTTTAAAG+TGG 0.552772 5.1:+14227168 MS.gene64849:CDS
GTGTTAGGATGAGATTGAGA+AGG 0.554693 5.1:-14226602 None:intergenic
CTCACCTTGACGGTGAGCAA+TGG 0.559285 5.1:-14226774 None:intergenic
TCGCAGCTCGAAAGTTATCA+TGG 0.559517 5.1:-14228512 None:intergenic
ATGGCTTAAAGGGGCTGTAA+GGG 0.559799 5.1:+14228536 MS.gene64849:CDS
CAAAGTCAAAGGCAACCAAA+TGG 0.562903 5.1:+14227158 MS.gene64849:CDS
TAGGAATCCGGCTCTATCAA+GGG 0.572124 5.1:+14228357 MS.gene64849:CDS
TGGTTCTGCATCAAAGTCAA+AGG 0.586052 5.1:+14227147 MS.gene64849:CDS
TAATGCTGCTAGCAAGGAGA+TGG 0.590641 5.1:+14228486 MS.gene64849:CDS
TTATCTTCTAAAAGCGTCCA+AGG 0.591472 5.1:-14228439 None:intergenic
AGCTAACCAAAATTAAGACA+TGG 0.593843 5.1:+14226642 MS.gene64849:CDS
TAGAGCCGGATTCCTAGAAA+GGG 0.594182 5.1:-14228350 None:intergenic
ATAACTTTCGAGCTGCGAGA+TGG 0.597275 5.1:+14228517 MS.gene64849:CDS
TAGCAGCATTACTTGGAGAA+GGG 0.597901 5.1:-14228474 None:intergenic
GCTAACCAAAATTAAGACAT+GGG 0.599820 5.1:+14226643 MS.gene64849:CDS
TTTGTTGAAGAGTTGTTGGA+TGG 0.600565 5.1:+14226800 MS.gene64849:CDS
ACAAATCTTCAAGAAAGGAA+AGG 0.601275 5.1:-14226706 None:intergenic
AGTGATTACAGTTATTAGAG+AGG 0.603135 5.1:+14227075 MS.gene64849:CDS
TTCATCTTGATTCAAAAGCG+AGG 0.608106 5.1:-14227041 None:intergenic
AAGGCCATTGCTCACCGTCA+AGG 0.611754 5.1:+14226770 MS.gene64849:CDS
ATCAGATGTCGATGTTGATG+TGG 0.616891 5.1:-14226669 None:intergenic
ACATCTGATTCAATTACCAA+TGG 0.628084 5.1:+14226683 MS.gene64849:CDS
GGATATCTGCGGTATCACAA+GGG 0.653940 5.1:+14226838 MS.gene64849:CDS
TAACTGTAATCACTGCAACA+AGG 0.659068 5.1:-14227066 None:intergenic
AGCTGCGAGATGGCTTAAAG+GGG 0.659698 5.1:+14228527 MS.gene64849:CDS
TTGCAGATAATAATGCATCG+CGG 0.798487 5.1:+14228380 MS.gene64849:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACATATGGAAAGTAAATT+TGG + chr5.1:14227013-14227032 MS.gene64849:CDS 20.0%
!! AAGCAAAAAAACAGTATTAA+TGG + chr5.1:14227865-14227884 MS.gene64849:intron 20.0%
!! AATATACAAATCTTCAAGAA+AGG - chr5.1:14226714-14226733 None:intergenic 20.0%
!! ATAATCAGTATCTTAAATCA+CGG + chr5.1:14227800-14227819 MS.gene64849:intron 20.0%
!! TGAAGATTTGTATATTTCTT+TGG + chr5.1:14226718-14226737 MS.gene64849:CDS 20.0%
!!! AATCACATCTTTAAAACATA+TGG + chr5.1:14227000-14227019 MS.gene64849:CDS 20.0%
!!! ATTTTCTTTAATTTGTGACA+CGG - chr5.1:14226867-14226886 None:intergenic 20.0%
!!! TTGTTTTGGTTTTTTTTTAC+TGG + chr5.1:14228068-14228087 MS.gene64849:intron 20.0%
! ATAATCAAATTGGTATTGCT+TGG - chr5.1:14227993-14228012 None:intergenic 25.0%
! ATTTGAACCTTCTCTTAAAA+GGG - chr5.1:14227281-14227300 None:intergenic 25.0%
! TGAAATGATAGAAAATGGTT+TGG + chr5.1:14227348-14227367 MS.gene64849:CDS 25.0%
! TTAAAGAAATGAATTGGTAC+AGG - chr5.1:14228286-14228305 None:intergenic 25.0%
! TTTATTGATGCAAAATGACT+TGG + chr5.1:14228163-14228182 MS.gene64849:intron 25.0%
!! AATCAGTTATTGTAGTTTTC+AGG - chr5.1:14227598-14227617 None:intergenic 25.0%
!! CTGACTTTAAAGAAATGAAT+TGG - chr5.1:14228292-14228311 None:intergenic 25.0%
!! CTGTAATTTTTGCATTTATG+CGG + chr5.1:14228237-14228256 MS.gene64849:intron 25.0%
!! TTAAGATACTGATTATGTCT+TGG - chr5.1:14227796-14227815 None:intergenic 25.0%
!!! CATCATCTTTGATTTTATGT+TGG - chr5.1:14227750-14227769 None:intergenic 25.0%
AATACAACAGGACAATGAAT+TGG + chr5.1:14228408-14228427 MS.gene64849:CDS 30.0%
ACAAATCTTCAAGAAAGGAA+AGG - chr5.1:14226709-14226728 None:intergenic 30.0%
ACATCTGATTCAATTACCAA+TGG + chr5.1:14226683-14226702 MS.gene64849:CDS 30.0%
AGAAGGTTCAAATGTTTCAA+AGG + chr5.1:14227288-14227307 MS.gene64849:CDS 30.0%
AGCTAACCAAAATTAAGACA+TGG + chr5.1:14226642-14226661 MS.gene64849:CDS 30.0%
AGTGATTACAGTTATTAGAG+AGG + chr5.1:14227075-14227094 MS.gene64849:CDS 30.0%
ATAGATCATTAGACAAGACA+AGG - chr5.1:14228144-14228163 None:intergenic 30.0%
ATGAATTGGAAATTGATCCT+TGG + chr5.1:14228422-14228441 MS.gene64849:CDS 30.0%
CAATATGTCATCAACACAAA+AGG + chr5.1:14226751-14226770 MS.gene64849:CDS 30.0%
CATTTGAACCTTCTCTTAAA+AGG - chr5.1:14227282-14227301 None:intergenic 30.0%
CGCATAAATGCAAAAATTAC+AGG - chr5.1:14228239-14228258 None:intergenic 30.0%
GCAGTTGAAATGATAGAAAA+TGG + chr5.1:14227343-14227362 MS.gene64849:CDS 30.0%
GCTAACCAAAATTAAGACAT+GGG + chr5.1:14226643-14226662 MS.gene64849:CDS 30.0%
TGCAAGCTCAAACAAAAAAT+TGG + chr5.1:14227719-14227738 MS.gene64849:intron 30.0%
! GTCAATTTCAAGTGTATTAG+CGG - chr5.1:14228026-14228045 None:intergenic 30.0%
! GTGAAAATTTTGGATATCTG+CGG + chr5.1:14226827-14226846 MS.gene64849:CDS 30.0%
! TCAATTTCAAGTGTATTAGC+GGG - chr5.1:14228025-14228044 None:intergenic 30.0%
! TTTTGCTTTCCTTTTCTCTT+GGG - chr5.1:14227853-14227872 None:intergenic 30.0%
! TTTTTGCTTTCCTTTTCTCT+TGG - chr5.1:14227854-14227873 None:intergenic 30.0%
!! CATCTTTGATTTTATGTTGG+TGG - chr5.1:14227747-14227766 None:intergenic 30.0%
!! CTTGGATAAGAAGCTTTAAA+AGG - chr5.1:14227959-14227978 None:intergenic 30.0%
!! GAAATTTGTTGAAGAGTTGT+TGG + chr5.1:14226796-14226815 MS.gene64849:CDS 30.0%
!!! TTTTGCCACTTTAAACCATT+TGG - chr5.1:14227176-14227195 None:intergenic 30.0%
AAAGTCAGCACTACAATTTC+TGG + chr5.1:14228304-14228323 MS.gene64849:CDS 35.0%
AACCAACCAAGAAAGACAAA+AGG - chr5.1:14227132-14227151 None:intergenic 35.0%
AAGAAATGAATTGGTACAGG+TGG - chr5.1:14228283-14228302 None:intergenic 35.0%
AATCTCATGTGAAGAGAAGT+TGG + chr5.1:14227213-14227232 MS.gene64849:CDS 35.0%
ACCAACCAAGAAAGACAAAA+GGG - chr5.1:14227131-14227150 None:intergenic 35.0%
CAACAAATTTCTCACCTTGA+CGG - chr5.1:14226787-14226806 None:intergenic 35.0%
TAACTGTAATCACTGCAACA+AGG - chr5.1:14227069-14227088 None:intergenic 35.0%
TAGCTCTTGTTCTAATCTTG+AGG - chr5.1:14226627-14226646 None:intergenic 35.0%
TCAGTATCTTAAATCACGGA+AGG + chr5.1:14227804-14227823 MS.gene64849:intron 35.0%
TCTATCTTAGAGATCTACTC+AGG + chr5.1:14227426-14227445 MS.gene64849:intron 35.0%
TTCATCTTGATTCAAAAGCG+AGG - chr5.1:14227044-14227063 None:intergenic 35.0%
TTGCAGATAATAATGCATCG+CGG + chr5.1:14228380-14228399 MS.gene64849:CDS 35.0%
TTTGTTGAAGAGTTGTTGGA+TGG + chr5.1:14226800-14226819 MS.gene64849:CDS 35.0%
! AAATTACAGGCATTGCATCT+TGG - chr5.1:14228226-14228245 None:intergenic 35.0%
! AATTTCAAGTGTATTAGCGG+GGG - chr5.1:14228023-14228042 None:intergenic 35.0%
! ATGGTTTGGAGAATGTATTC+AGG + chr5.1:14227362-14227381 MS.gene64849:CDS 35.0%
! CAATTTCAAGTGTATTAGCG+GGG - chr5.1:14228024-14228043 None:intergenic 35.0%
! GGATGGTTCAGTGAAAATTT+TGG + chr5.1:14226817-14226836 MS.gene64849:CDS 35.0%
! GGTTTCCCATGTCTTAATTT+TGG - chr5.1:14226651-14226670 None:intergenic 35.0%
! TACTGATTATGTCTTGGTGT+TGG - chr5.1:14227790-14227809 None:intergenic 35.0%
! TCAATCCCTTTTGTCTTTCT+TGG + chr5.1:14227123-14227142 MS.gene64849:CDS 35.0%
! TGGTGTTGGAATTCATTTGT+TGG - chr5.1:14227776-14227795 None:intergenic 35.0%
! TGTTCTAATCTTGAGGTGTT+AGG - chr5.1:14226620-14226639 None:intergenic 35.0%
!! GCGCATGATCTATTTTGTTT+TGG + chr5.1:14228054-14228073 MS.gene64849:intron 35.0%
!! GGGTTGGTCAATAATCAAAT+TGG - chr5.1:14228003-14228022 None:intergenic 35.0%
!! TTATCTTCTAAAAGCGTCCA+AGG - chr5.1:14228442-14228461 None:intergenic 35.0%
!! TTGAGAACCCTTTTAAGAGA+AGG + chr5.1:14227271-14227290 MS.gene64849:CDS 35.0%
AAATGAATTGGTACAGGTGG+AGG - chr5.1:14228280-14228299 None:intergenic 40.0%
ATCAGATGTCGATGTTGATG+TGG - chr5.1:14226672-14226691 None:intergenic 40.0%
CAAAGTCAAAGGCAACCAAA+TGG + chr5.1:14227158-14227177 MS.gene64849:CDS 40.0%
CTTGGACTGTATGCAACTTT+CGG + chr5.1:14228181-14228200 MS.gene64849:intron 40.0%
GAAAACTGTTTGAGCGAACA+TGG - chr5.1:14226583-14226602 None:intergenic 40.0%
GGCAACCAAATGGTTTAAAG+TGG + chr5.1:14227168-14227187 MS.gene64849:CDS 40.0%
GTGTTAGGATGAGATTGAGA+AGG - chr5.1:14226605-14226624 None:intergenic 40.0%
TAGACAAGACAAGGAAGAAC+TGG - chr5.1:14228135-14228154 None:intergenic 40.0%
TAGCAGCATTACTTGGAGAA+GGG - chr5.1:14228477-14228496 None:intergenic 40.0%
TTCAAGAAAGGAAAGGCCAT+TGG - chr5.1:14226702-14226721 None:intergenic 40.0%
! ACGTGAAAGATTTGAGGCTT+TGG + chr5.1:14227315-14227334 MS.gene64849:CDS 40.0%
! CGGTTTTTACCCAAGAGAAA+AGG + chr5.1:14227841-14227860 MS.gene64849:intron 40.0%
! TCCCTTTTGTCTTTCTTGGT+TGG + chr5.1:14227127-14227146 MS.gene64849:CDS 40.0%
! TGGTTCTGCATCAAAGTCAA+AGG + chr5.1:14227147-14227166 MS.gene64849:CDS 40.0%
!! ACGCTTTTAGAAGATAACGC+TGG + chr5.1:14228445-14228464 MS.gene64849:CDS 40.0%
!! GAACTATAGTCGACTGGTTT+AGG - chr5.1:14227931-14227950 None:intergenic 40.0%
!! GGAAGGATGAGTATTGAGTT+CGG + chr5.1:14227821-14227840 MS.gene64849:intron 40.0%
!! TGGCTTTAACTCCTGTTGTT+CGG + chr5.1:14228324-14228343 MS.gene64849:CDS 40.0%
AACTTTCGGACGCTATTTGG+TGG + chr5.1:14228195-14228214 MS.gene64849:intron 45.0%
ACTGGTGTATGTGTGCCATA+GGG + chr5.1:14228086-14228105 MS.gene64849:intron 45.0%
ATAACTTTCGAGCTGCGAGA+TGG + chr5.1:14228517-14228536 MS.gene64849:CDS 45.0%
ATAGAGCCGGATTCCTAGAA+AGG - chr5.1:14228354-14228373 None:intergenic 45.0%
ATCGCGGAAGTCAATACAAC+AGG + chr5.1:14228396-14228415 MS.gene64849:CDS 45.0%
CACTTCACTCTGCTCTTAGA+AGG + chr5.1:14226894-14226913 MS.gene64849:CDS 45.0%
CTAGCAGCATTACTTGGAGA+AGG - chr5.1:14228478-14228497 None:intergenic 45.0%
CTCTGCTCTTAGAAGGAGAA+AGG + chr5.1:14226901-14226920 MS.gene64849:CDS 45.0%
GGAGAATGTATTCAGGCGTA+TGG + chr5.1:14227369-14227388 MS.gene64849:CDS 45.0%
GGATATCTGCGGTATCACAA+GGG + chr5.1:14226838-14226857 MS.gene64849:CDS 45.0%
GGATGCACGTGAAAGATTTG+AGG + chr5.1:14227309-14227328 MS.gene64849:CDS 45.0%
GTTGCAGAACTATAGTCGAC+TGG - chr5.1:14227937-14227956 None:intergenic 45.0%
TAATGCTGCTAGCAAGGAGA+TGG + chr5.1:14228486-14228505 MS.gene64849:CDS 45.0%
TACATTTCAGCAGTGCCCTA+TGG - chr5.1:14228104-14228123 None:intergenic 45.0%
TACTGGTGTATGTGTGCCAT+AGG + chr5.1:14228085-14228104 MS.gene64849:intron 45.0%
TAGAGCCGGATTCCTAGAAA+GGG - chr5.1:14228353-14228372 None:intergenic 45.0%
TAGGAATCCGGCTCTATCAA+GGG + chr5.1:14228357-14228376 MS.gene64849:CDS 45.0%
TCCAAGTAATGCTGCTAGCA+AGG + chr5.1:14228480-14228499 MS.gene64849:CDS 45.0%
TCCTTGCTAGCAGCATTACT+TGG - chr5.1:14228484-14228503 None:intergenic 45.0%
TCGCAGCTCGAAAGTTATCA+TGG - chr5.1:14228515-14228534 None:intergenic 45.0%
TGCAACTTTCGGACGCTATT+TGG + chr5.1:14228192-14228211 MS.gene64849:intron 45.0%
TGCTTGGATGCATTGTGTCT+TGG - chr5.1:14227977-14227996 None:intergenic 45.0%
TGGATATCTGCGGTATCACA+AGG + chr5.1:14226837-14226856 MS.gene64849:CDS 45.0%
AGAAAGGGTAGCCGAACAAC+AGG - chr5.1:14228338-14228357 None:intergenic 50.0%
AGCTGCGAGATGGCTTAAAG+GGG + chr5.1:14228527-14228546 MS.gene64849:CDS 50.0%
CTAGGAATCCGGCTCTATCA+AGG + chr5.1:14228356-14228375 MS.gene64849:CDS 50.0%
GAGCTGCGAGATGGCTTAAA+GGG + chr5.1:14228526-14228545 MS.gene64849:CDS 50.0%
GTTGTTCGGCTACCCTTTCT+AGG + chr5.1:14228338-14228357 MS.gene64849:CDS 50.0%
TCAAGTGTATTAGCGGGGGT+TGG - chr5.1:14228019-14228038 None:intergenic 50.0%
TCTGCAACCCTTGATAGAGC+CGG - chr5.1:14228367-14228386 None:intergenic 50.0%
! GGCTACCCTTTCTAGGAATC+CGG + chr5.1:14228345-14228364 MS.gene64849:CDS 50.0%
AAGGCCATTGCTCACCGTCA+AGG + chr5.1:14226770-14226789 MS.gene64849:CDS 55.0%
CGAGCTGCGAGATGGCTTAA+AGG + chr5.1:14228525-14228544 MS.gene64849:CDS 55.0%
CTCACCTTGACGGTGAGCAA+TGG - chr5.1:14226777-14226796 None:intergenic 55.0%
GTGGAGGCTGCAGGAGAAAG+AGG - chr5.1:14228264-14228283 None:intergenic 60.0%
TTGGTACAGGTGGAGGCTGC+AGG - chr5.1:14228273-14228292 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 14226563 14228555 14226563 ID=MS.gene64849
chr5.1 mRNA 14226563 14228555 14226563 ID=MS.gene64849.t1;Parent=MS.gene64849
chr5.1 exon 14226563 14227402 14226563 ID=MS.gene64849.t1.exon1;Parent=MS.gene64849.t1
chr5.1 CDS 14226563 14227402 14226563 ID=cds.MS.gene64849.t1;Parent=MS.gene64849.t1
chr5.1 exon 14228277 14228555 14228277 ID=MS.gene64849.t1.exon2;Parent=MS.gene64849.t1
chr5.1 CDS 14228277 14228555 14228277 ID=cds.MS.gene64849.t1;Parent=MS.gene64849.t1
Gene Sequence

>MS.gene64849

ATGGCAAGCAACAATTACCATGTTCGCTCAAACAGTTTTCCTTCTCAATCTCATCCTAACACCTCAAGATTAGAACAAGAGCTAACCAAAATTAAGACATGGGAAACCACATCAACATCGACATCTGATTCAATTACCAATGGCCTTTCCTTTCTTGAAGATTTGTATATTTCTTTGGAAAATCTTCTCAATATGTCATCAACACAAAAGGCCATTGCTCACCGTCAAGGTGAGAAATTTGTTGAAGAGTTGTTGGATGGTTCAGTGAAAATTTTGGATATCTGCGGTATCACAAGGGACACCGTGTCACAAATTAAAGAAAATGTTCAAACACTTCACTCTGCTCTTAGAAGGAGAAAGGCAGATTCAAGCATTGAAACAAGTGTAGCAGAATATAAATTCTTCACAAAGAAGATGACGAAGAATGTCACAAAGTTAATCACATCTTTAAAACATATGGAAAGTAAATTTGGAGCTTCCTCGCTTTTGAATCAAGATGAAGACCTTGTTGCAGTGATTACAGTTATTAGAGAGGTCATTGCAATGAACTTGTCTATCTTTCAATCCCTTTTGTCTTTCTTGGTTGGTTCTGCATCAAAGTCAAAGGCAACCAAATGGTTTAAAGTGGCAAAATTGATGCATAAAACGACAATCTCATGTGAAGAGAAGTTGGAGAATTTCAATGAATTGCAGTTAGTTGATGCATCTTTGAGAACCCTTTTAAGAGAAGGTTCAAATGTTTCAAAGGATGCACGTGAAAGATTTGAGGCTTTGGAGAATGCAGTTGAAATGATAGAAAATGGTTTGGAGAATGTATTCAGGCGTATGGTTAAAACTAGAGTCAGTCTTTTGAACATTATGACTCTATCTTAGAGATCTACTCAGGATCGAAAAATTTTGCACAGTTAATTTGTATATAAATACTATGTATACAATTCAATAGAAATACAATCAAATAGAAACAACAAGTTTTTGCTCTATATTTCAGCTCTTTTATTTTTAATTTGAAGTTATAGATTATTGTATTATTTGCCTGAAAACTACAATAACTGATTTTTTTTGTAAACAAACAGAATCATCAATAAAAGTCGTAACTAAAACTTAAGTACTAGTTGTGTTCAATCTCTTGTAGCAGAAAAAATAAGATAAAAAATGTTGCAAGCTCAAACAAAAAATTGGTTCCACCAACATAAAATCAAAGATGATGTAGCCAACAAATGAATTCCAACACCAAGACATAATCAGTATCTTAAATCACGGAAGGATGAGTATTGAGTTCGGTTTTTACCCAAGAGAAAAGGAAAGCAAAAAAACAGTATTAATGGCTCAAACGTGTCTATAAATCTACATCAGTAGCAGAAATTTCCTAAACCAGTCGACTATAGTTCTGCAACCTTTTAAAGCTTCTTATCCAAGACACAATGCATCCAAGCAATACCAATTTGATTATTGACCAACCCCCGCTAATACACTTGAAATTGACTACATCGTGCGCATGATCTATTTTGTTTTGGTTTTTTTTTACTGGTGTATGTGTGCCATAGGGCACTGCTGAAATGTAGCAGTTCGCCAGTTCTTCCTTGTCTTGTCTAATGATCTATTTATTGATGCAAAATGACTTGGACTGTATGCAACTTTCGGACGCTATTTGGTGGCGTATCCAAGATGCAATGCCTGTAATTTTTGCATTTATGCGGTCCTCTTTCTCCTGCAGCCTCCACCTGTACCAATTCATTTCTTTAAAGTCAGCACTACAATTTCTGGCTTTAACTCCTGTTGTTCGGCTACCCTTTCTAGGAATCCGGCTCTATCAAGGGTTGCAGATAATAATGCATCGCGGAAGTCAATACAACAGGACAATGAATTGGAAATTGATCCTTGGACGCTTTTAGAAGATAACGCTGGATCTTTCCCTTCTCCAAGTAATGCTGCTAGCAAGGAGATGGTGACCATGATAACTTTCGAGCTGCGAGATGGCTTAAAGGGGCTGTAA
Protein sequence

>MS.gene64849.t1

MASNNYHVRSNSFPSQSHPNTSRLEQELTKIKTWETTSTSTSDSITNGLSFLEDLYISLENLLNMSSTQKAIAHRQGEKFVEELLDGSVKILDICGITRDTVSQIKENVQTLHSALRRRKADSSIETSVAEYKFFTKKMTKNVTKLITSLKHMESKFGASSLLNQDEDLVAVITVIREVIAMNLSIFQSLLSFLVGSASKSKATKWFKVAKLMHKTTISCEEKLENFNELQLVDASLRTLLREGSNVSKDARERFEALENAVEMIENGLENVFRRMVKTRPPPVPIHFFKVSTTISGFNSCCSATLSRNPALSRVADNNASRKSIQQDNELEIDPWTLLEDNAGSFPSPSNAASKEMVTMITFELRDGLKGL