Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67546.t1 | XP_024639655.1 | 84.2 | 273 | 40 | 1 | 2 | 274 | 3 | 272 | 1.70E-119 | 439.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67546.t1 | Q39129 | 64.3 | 42 | 15 | 0 | 274 | 315 | 78 | 119 | 3.6e-09 | 63.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67546.t1 | G7JYU9 | 84.2 | 273 | 40 | 1 | 2 | 274 | 3 | 272 | 1.2e-119 | 439.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67546.t1 | MTR_5g023350 | 86.182 | 275 | 34 | 2 | 1 | 274 | 1 | 272 | 5.38e-164 | 458 |
| MS.gene67546.t1 | MTR_5g023600 | 86.182 | 275 | 34 | 2 | 1 | 274 | 1 | 272 | 5.07e-162 | 453 |
| MS.gene67546.t1 | MTR_5g023340 | 84.727 | 275 | 38 | 2 | 1 | 274 | 1 | 272 | 9.47e-162 | 452 |
| MS.gene67546.t1 | MTR_5g023550 | 82.482 | 274 | 45 | 1 | 1 | 274 | 1 | 271 | 5.21e-158 | 442 |
| MS.gene67546.t1 | MTR_5g023520 | 82.545 | 275 | 44 | 2 | 1 | 274 | 1 | 272 | 9.45e-158 | 442 |
| MS.gene67546.t1 | MTR_5g023530 | 82.784 | 273 | 43 | 2 | 3 | 274 | 4 | 273 | 1.87e-157 | 441 |
| MS.gene67546.t1 | MTR_5g023370 | 82.545 | 275 | 44 | 2 | 1 | 274 | 1 | 272 | 4.90e-157 | 440 |
| MS.gene67546.t1 | MTR_5g023390 | 82.182 | 275 | 45 | 2 | 1 | 274 | 1 | 272 | 6.73e-157 | 440 |
| MS.gene67546.t1 | MTR_5g023320 | 83.696 | 276 | 37 | 4 | 1 | 274 | 1 | 270 | 7.12e-157 | 440 |
| MS.gene67546.t1 | MTR_5g023470 | 81.685 | 273 | 46 | 2 | 3 | 274 | 4 | 273 | 4.28e-155 | 436 |
| MS.gene67546.t1 | MTR_5g023580 | 83.333 | 276 | 44 | 2 | 1 | 274 | 1 | 276 | 1.18e-154 | 437 |
| MS.gene67546.t1 | MTR_8g074450 | 70.036 | 277 | 80 | 2 | 1 | 274 | 1 | 277 | 2.80e-132 | 378 |
| MS.gene67546.t1 | MTR_8g074510 | 68.231 | 277 | 83 | 3 | 1 | 274 | 1 | 275 | 3.22e-129 | 370 |
| MS.gene67546.t1 | MTR_8g074420 | 68.231 | 277 | 85 | 2 | 1 | 274 | 1 | 277 | 6.49e-124 | 357 |
| MS.gene67546.t1 | MTR_5g023460 | 80.682 | 176 | 27 | 2 | 99 | 274 | 11 | 179 | 2.48e-95 | 280 |
| MS.gene67546.t1 | MTR_8g074530 | 44.043 | 277 | 150 | 4 | 2 | 274 | 17 | 292 | 1.48e-63 | 203 |
| MS.gene67546.t1 | MTR_5g023290 | 37.847 | 288 | 164 | 5 | 2 | 274 | 9 | 296 | 3.06e-55 | 182 |
| MS.gene67546.t1 | MTR_5g023410 | 87.000 | 100 | 13 | 0 | 1 | 100 | 1 | 100 | 9.04e-52 | 170 |
| MS.gene67546.t1 | MTR_4g070530 | 32.246 | 276 | 185 | 2 | 1 | 274 | 8 | 283 | 1.53e-39 | 140 |
| MS.gene67546.t1 | MTR_5g023650 | 33.101 | 287 | 176 | 5 | 7 | 281 | 14 | 296 | 2.51e-38 | 138 |
| MS.gene67546.t1 | MTR_8g074380 | 34.386 | 285 | 153 | 8 | 7 | 281 | 14 | 274 | 1.12e-37 | 137 |
| MS.gene67546.t1 | MTR_4g070590 | 34.532 | 278 | 170 | 7 | 6 | 274 | 14 | 288 | 2.13e-36 | 132 |
| MS.gene67546.t1 | MTR_4g070570 | 30.526 | 285 | 178 | 9 | 3 | 274 | 13 | 290 | 2.60e-36 | 132 |
| MS.gene67546.t1 | MTR_3g116950 | 34.752 | 282 | 166 | 9 | 3 | 274 | 10 | 283 | 2.73e-35 | 129 |
| MS.gene67546.t1 | MTR_4g070540 | 32.000 | 275 | 183 | 4 | 3 | 274 | 10 | 283 | 6.18e-34 | 126 |
| MS.gene67546.t1 | MTR_3g116920 | 31.786 | 280 | 179 | 7 | 3 | 274 | 10 | 285 | 3.95e-31 | 119 |
| MS.gene67546.t1 | MTR_1g037820 | 29.915 | 234 | 125 | 6 | 51 | 274 | 9 | 213 | 2.95e-21 | 90.9 |
| MS.gene67546.t1 | MTR_5g023170 | 74.545 | 55 | 9 | 1 | 267 | 316 | 131 | 185 | 2.97e-21 | 89.7 |
| MS.gene67546.t1 | MTR_3g115150 | 27.336 | 289 | 179 | 9 | 5 | 274 | 27 | 303 | 2.58e-20 | 89.7 |
| MS.gene67546.t1 | MTR_5g023540 | 55.224 | 67 | 27 | 1 | 162 | 228 | 1 | 64 | 5.21e-15 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67546.t1 | AT4G35690 | 36.071 | 280 | 161 | 6 | 1 | 274 | 4 | 271 | 4.65e-50 | 168 |
| MS.gene67546.t1 | AT2G17080 | 35.636 | 275 | 151 | 6 | 1 | 274 | 1 | 250 | 1.45e-41 | 145 |
| MS.gene67546.t1 | AT2G17680 | 37.113 | 291 | 151 | 11 | 1 | 274 | 4 | 279 | 1.47e-39 | 140 |
| MS.gene67546.t1 | AT2G17070 | 35.273 | 275 | 152 | 6 | 1 | 274 | 1 | 250 | 7.62e-39 | 138 |
| MS.gene67546.t1 | AT4G35200 | 34.545 | 275 | 147 | 7 | 1 | 274 | 1 | 243 | 1.67e-38 | 137 |
| MS.gene67546.t1 | AT4G35710 | 34.752 | 282 | 161 | 7 | 1 | 274 | 4 | 270 | 9.70e-38 | 135 |
| MS.gene67546.t1 | AT4G35210 | 31.636 | 275 | 152 | 7 | 1 | 274 | 1 | 240 | 7.94e-34 | 124 |
| MS.gene67546.t1 | AT4G35720 | 33.937 | 221 | 131 | 6 | 5 | 214 | 14 | 230 | 5.47e-24 | 100 |
| MS.gene67546.t1 | AT4G35680 | 35.897 | 195 | 111 | 4 | 7 | 193 | 18 | 206 | 3.55e-22 | 95.1 |
| MS.gene67546.t1 | AT4G35660 | 35.354 | 198 | 115 | 7 | 6 | 193 | 13 | 207 | 3.47e-21 | 91.7 |
| MS.gene67546.t1 | AT1G76240 | 28.214 | 280 | 178 | 7 | 5 | 274 | 29 | 295 | 4.91e-21 | 91.7 |
| MS.gene67546.t1 | AT3G51400 | 29.930 | 284 | 167 | 10 | 1 | 274 | 1 | 262 | 1.47e-15 | 75.9 |
| MS.gene67546.t1 | AT5G66040 | 64.286 | 42 | 15 | 0 | 274 | 315 | 23 | 64 | 7.75e-14 | 65.9 |
| MS.gene67546.t1 | AT5G66040 | 64.286 | 42 | 15 | 0 | 274 | 315 | 78 | 119 | 1.52e-13 | 66.6 |
| MS.gene67546.t1 | AT1G76210 | 27.778 | 234 | 140 | 8 | 46 | 274 | 4 | 213 | 5.93e-12 | 64.7 |
| MS.gene67546.t1 | AT4G35770 | 52.727 | 55 | 21 | 1 | 267 | 316 | 128 | 182 | 6.00e-12 | 63.9 |
Find 56 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTGAACCTTCCCTTAAA+AGG | 0.141374 | 5.4:-15141637 | None:intergenic |
| AAACATAAGGAAACTAAATT+TGG | 0.177473 | 5.4:+15141374 | MS.gene67546:CDS |
| GGATAGTTCAGTCAGAATTT+TGG | 0.246189 | 5.4:+15141178 | MS.gene67546:CDS |
| CCACAAATTTCTCACCTTGA+TGG | 0.264918 | 5.4:-15141145 | None:intergenic |
| CTCTGACAATTTCAATGAAT+TGG | 0.272748 | 5.4:+15141589 | MS.gene67546:CDS |
| GCAATTGAAATGATAGAAAA+TGG | 0.280241 | 5.4:+15141701 | MS.gene67546:CDS |
| TGTTCTATTCTTGTGGTGTT+AGG | 0.282503 | 5.4:-15140978 | None:intergenic |
| TGAAGATTTGTATATATCTT+TGG | 0.284754 | 5.4:+15141079 | MS.gene67546:CDS |
| ATGGCTTGGAGAGTTTATTT+AGG | 0.293280 | 5.4:+15141720 | MS.gene67546:CDS |
| CTTTGTGAAGAATTTATATT+CGG | 0.312307 | 5.4:-15141312 | None:intergenic |
| GGAGAGTTTATTTAGGAGAT+TGG | 0.342899 | 5.4:+15141727 | MS.gene67546:CDS |
| TCCAACCAAGAAAGACAAAA+TGG | 0.347485 | 5.4:-15141489 | None:intergenic |
| TATGCTGCTTGGACTCAAAA+TGG | 0.348576 | 5.4:+15142609 | MS.gene67546:CDS |
| ATATGAAAGATTTGAGAGTT+TGG | 0.358591 | 5.4:+15141673 | MS.gene67546:CDS |
| CCCTTCACTCAGCTCTTAGA+AGG | 0.394926 | 5.4:+15141255 | MS.gene67546:CDS |
| GAAATTTGTGGAAGAGTTGT+TGG | 0.401056 | 5.4:+15141157 | MS.gene67546:CDS |
| ACCAGCTATGTCTGCGAGTC+CGG | 0.405276 | 5.4:-15142583 | None:intergenic |
| AGGGTTGTCAGCTTGGGAAT+AGG | 0.411997 | 5.4:+15142384 | MS.gene67546:intron |
| GATCACATCTTTAAAACATA+AGG | 0.417807 | 5.4:+15141361 | MS.gene67546:CDS |
| ACATCTGATTCAATTATCAT+TGG | 0.423183 | 5.4:+15141044 | MS.gene67546:CDS |
| GAACTGTAATCACTGCAATA+AGG | 0.430581 | 5.4:-15141427 | None:intergenic |
| TAGCTGGTGGTTATGCTGCT+TGG | 0.436274 | 5.4:+15142598 | MS.gene67546:CDS |
| ATTTGAACCTTCCCTTAAAA+GGG | 0.448167 | 5.4:-15141636 | None:intergenic |
| CTCAGCTCTTAGAAGGAGAA+AGG | 0.449354 | 5.4:+15141262 | MS.gene67546:CDS |
| CCATCAAGGTGAGAAATTTG+TGG | 0.460090 | 5.4:+15141145 | MS.gene67546:CDS |
| CAATTTGTCATCAACACAAA+AGG | 0.464258 | 5.4:+15141112 | MS.gene67546:CDS |
| TATCTCTTGTTCTATTCTTG+TGG | 0.476617 | 5.4:-15140985 | None:intergenic |
| TGACAAAATTGATGCAAAAG+AGG | 0.490023 | 5.4:+15141549 | MS.gene67546:CDS |
| AGGTCCAATCATTGTTCTGT+AGG | 0.492448 | 5.4:-15142636 | None:intergenic |
| TATATACAAATCTTCAAGAA+AGG | 0.505581 | 5.4:-15141072 | None:intergenic |
| TGCATTGTATAGGGGTTCAC+CGG | 0.511879 | 5.4:+15142564 | MS.gene67546:intron |
| ATTGTCAGAGTTCTCTTCAC+AGG | 0.513347 | 5.4:-15141576 | None:intergenic |
| GGAAGGTTCAAATGTTTCAA+AGG | 0.515818 | 5.4:+15141646 | MS.gene67546:CDS |
| TGAAATGATAGAAAATGGCT+TGG | 0.517236 | 5.4:+15141706 | MS.gene67546:CDS |
| GTCAAAGGCAACCAAATGGT+TGG | 0.526304 | 5.4:+15141523 | MS.gene67546:CDS |
| TCCTTCTAAGAGCTGAGTGA+AGG | 0.531554 | 5.4:-15141256 | None:intergenic |
| TGGATATATGTGGCATCACA+AGG | 0.534307 | 5.4:+15141198 | MS.gene67546:CDS |
| TCAGCTCTTAGAAGGAGAAA+GGG | 0.534968 | 5.4:+15141263 | MS.gene67546:CDS |
| ACCGGACTCGCAGACATAGC+TGG | 0.543907 | 5.4:+15142582 | MS.gene67546:CDS |
| GACAAAATTGATGCAAAAGA+GGG | 0.552355 | 5.4:+15141550 | MS.gene67546:CDS |
| GCTTGGGAATAGGTCTGTGA+TGG | 0.559742 | 5.4:+15142394 | MS.gene67546:CDS |
| CAAAGTCAAAGGCAACCAAA+TGG | 0.562903 | 5.4:+15141519 | MS.gene67546:CDS |
| CCTTCTAAGAGCTGAGTGAA+GGG | 0.569906 | 5.4:-15141255 | None:intergenic |
| TTTCAATGAATTGGAGTGTG+TGG | 0.576990 | 5.4:+15141598 | MS.gene67546:CDS |
| TGGATCTTCATCAAAGTCAA+AGG | 0.588491 | 5.4:+15141508 | MS.gene67546:CDS |
| AAGGCTATTTCTCACCATCA+AGG | 0.605742 | 5.4:+15141131 | MS.gene67546:CDS |
| TTGATCTTGATTCAAAAGTG+AGG | 0.609457 | 5.4:-15141402 | None:intergenic |
| ATCAGATGTGGATGTTGATG+TGG | 0.611639 | 5.4:-15141030 | None:intergenic |
| GAAAACTGTTTGAACGAACA+TGG | 0.612401 | 5.4:-15140941 | None:intergenic |
| AGTGATTACAGTTCTTAGAG+AGG | 0.623623 | 5.4:+15141436 | MS.gene67546:CDS |
| AATGATAATTGAATCAGATG+TGG | 0.626315 | 5.4:-15141042 | None:intergenic |
| GTGTTAGGATGTGATTGAGA+AGG | 0.634141 | 5.4:-15140963 | None:intergenic |
| AGATATGCAAGATCAAGACA+TGG | 0.645800 | 5.4:+15141003 | MS.gene67546:CDS |
| GATATGCAAGATCAAGACAT+GGG | 0.662406 | 5.4:+15141004 | MS.gene67546:CDS |
| GGATATATGTGGCATCACAA+GGG | 0.664791 | 5.4:+15141199 | MS.gene67546:CDS |
| GGACTCGCAGACATAGCTGG+TGG | 0.730419 | 5.4:+15142585 | MS.gene67546:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATGTAACTAAAAATTA+AGG | + | chr5.4:15142027-15142046 | MS.gene67546:intron | 10.0% |
| !! | TAAATGTAACTAAAAATTAA+GGG | + | chr5.4:15142028-15142047 | MS.gene67546:intron | 10.0% |
| !!! | TTAATTTTTAGTTACATTTA+TGG | - | chr5.4:15142028-15142047 | None:intergenic | 10.0% |
| !! | AAAACAGAACAAATACTAAT+AGG | + | chr5.4:15142189-15142208 | MS.gene67546:intron | 20.0% |
| !! | AAACATAAGGAAACTAAATT+TGG | + | chr5.4:15141374-15141393 | MS.gene67546:CDS | 20.0% |
| !! | AGTAAAAATAGGTTTAGTAA+AGG | + | chr5.4:15142224-15142243 | MS.gene67546:intron | 20.0% |
| !! | CTTTGTGAAGAATTTATATT+CGG | - | chr5.4:15141315-15141334 | None:intergenic | 20.0% |
| !! | GAGTAAAAACATTCATTAAT+TGG | + | chr5.4:15142317-15142336 | MS.gene67546:intron | 20.0% |
| !! | TATATACAAATCTTCAAGAA+AGG | - | chr5.4:15141075-15141094 | None:intergenic | 20.0% |
| !! | TGAAGATTTGTATATATCTT+TGG | + | chr5.4:15141079-15141098 | MS.gene67546:CDS | 20.0% |
| !! | TTCAAACACAAAGTAAAAAT+AGG | + | chr5.4:15142213-15142232 | MS.gene67546:intron | 20.0% |
| !!! | ATGTTACAATTTTTCTCTTA+AGG | + | chr5.4:15141931-15141950 | MS.gene67546:intron | 20.0% |
| !!! | ATTAAACTGTGCAAAATTTT+TGG | - | chr5.4:15141812-15141831 | None:intergenic | 20.0% |
| !!! | ATTTGTTCTGTTTTATAGTA+AGG | - | chr5.4:15142183-15142202 | None:intergenic | 20.0% |
| !!! | ATTTTCTTTGATTTGTAAGA+TGG | - | chr5.4:15141228-15141247 | None:intergenic | 20.0% |
| !!! | CAAACAAATTGTAGTTTTTT+AGG | - | chr5.4:15141986-15142005 | None:intergenic | 20.0% |
| !!! | TTAATGTTATTGTTTTTGCA+GGG | + | chr5.4:15142365-15142384 | MS.gene67546:intron | 20.0% |
| !!! | TTTGTTCTGTTTTATAGTAA+GGG | - | chr5.4:15142182-15142201 | None:intergenic | 20.0% |
| ! | AAGAAAAAATTAGGAGATCA+AGG | + | chr5.4:15142295-15142314 | MS.gene67546:intron | 25.0% |
| ! | AATGATAATTGAATCAGATG+TGG | - | chr5.4:15141045-15141064 | None:intergenic | 25.0% |
| ! | ACAATCAAATAGAAACAACA+AGG | + | chr5.4:15141871-15141890 | MS.gene67546:intron | 25.0% |
| ! | ACATCTGATTCAATTATCAT+TGG | + | chr5.4:15141044-15141063 | MS.gene67546:CDS | 25.0% |
| ! | ATATGAAAGATTTGAGAGTT+TGG | + | chr5.4:15141673-15141692 | MS.gene67546:CDS | 25.0% |
| ! | ATTGTGTATATCATGTAGTA+TGG | - | chr5.4:15142264-15142283 | None:intergenic | 25.0% |
| ! | GCAATTGAAATGATAGAAAA+TGG | + | chr5.4:15141701-15141720 | MS.gene67546:CDS | 25.0% |
| ! | GTCATTCGAAAGAAAAAATT+AGG | + | chr5.4:15142286-15142305 | MS.gene67546:intron | 25.0% |
| !! | CAATTTGTTTGATAAGCAAA+CGG | + | chr5.4:15141995-15142014 | MS.gene67546:intron | 25.0% |
| !!! | AATTGTTTTGCATTGTATAG+GGG | + | chr5.4:15142556-15142575 | MS.gene67546:intron | 25.0% |
| !!! | AGAATTGTTTTGCATTGTAT+AGG | + | chr5.4:15142554-15142573 | MS.gene67546:intron | 25.0% |
| !!! | GAATTGTTTTGCATTGTATA+GGG | + | chr5.4:15142555-15142574 | MS.gene67546:intron | 25.0% |
| !!! | GATCACATCTTTAAAACATA+AGG | + | chr5.4:15141361-15141380 | MS.gene67546:CDS | 25.0% |
| !!! | GTTAATGTTATTGTTTTTGC+AGG | + | chr5.4:15142364-15142383 | MS.gene67546:intron | 25.0% |
| !!! | TTGTCTTGATTTTAGGTTTT+AGG | - | chr5.4:15142112-15142131 | None:intergenic | 25.0% |
| AACATCATCACACTAACATA+GGG | + | chr5.4:15141773-15141792 | MS.gene67546:intron | 30.0% | |
| AATTGGAATGACAAGAAACT+AGG | - | chr5.4:15142470-15142489 | None:intergenic | 30.0% | |
| ATTTGAACCTTCCCTTAAAA+GGG | - | chr5.4:15141639-15141658 | None:intergenic | 30.0% | |
| CAATTTGTCATCAACACAAA+AGG | + | chr5.4:15141112-15141131 | MS.gene67546:CDS | 30.0% | |
| CTCTGACAATTTCAATGAAT+TGG | + | chr5.4:15141589-15141608 | MS.gene67546:CDS | 30.0% | |
| GACAAAATTGATGCAAAAGA+GGG | + | chr5.4:15141550-15141569 | MS.gene67546:CDS | 30.0% | |
| TATCTCTTGTTCTATTCTTG+TGG | - | chr5.4:15140988-15141007 | None:intergenic | 30.0% | |
| TGAAATGATAGAAAATGGCT+TGG | + | chr5.4:15141706-15141725 | MS.gene67546:CDS | 30.0% | |
| TGACAAAATTGATGCAAAAG+AGG | + | chr5.4:15141549-15141568 | MS.gene67546:CDS | 30.0% | |
| TTGATCTTGATTCAAAAGTG+AGG | - | chr5.4:15141405-15141424 | None:intergenic | 30.0% | |
| ! | GTCAGAATTTTGGATATATG+TGG | + | chr5.4:15141188-15141207 | MS.gene67546:CDS | 30.0% |
| ! | GTTAATAAAGTATCTATCCC+TGG | - | chr5.4:15142494-15142513 | None:intergenic | 30.0% |
| ! | TCAATCCATTTTGTCTTTCT+TGG | + | chr5.4:15141484-15141503 | MS.gene67546:CDS | 30.0% |
| !! | ATCTTTGAGAACCCTTTTAA+GGG | + | chr5.4:15141625-15141644 | MS.gene67546:CDS | 30.0% |
| !! | TTTAGTAAAGGCACTAGAAA+TGG | + | chr5.4:15142236-15142255 | MS.gene67546:intron | 30.0% |
| AAGTATCTATCCCTGGAAAT+TGG | - | chr5.4:15142487-15142506 | None:intergenic | 35.0% | |
| AGATATGCAAGATCAAGACA+TGG | + | chr5.4:15141003-15141022 | MS.gene67546:CDS | 35.0% | |
| AGTGATTACAGTTCTTAGAG+AGG | + | chr5.4:15141436-15141455 | MS.gene67546:CDS | 35.0% | |
| ATGGAATTTATCAGTAGGCT+TGG | - | chr5.4:15142140-15142159 | None:intergenic | 35.0% | |
| CATTTGAACCTTCCCTTAAA+AGG | - | chr5.4:15141640-15141659 | None:intergenic | 35.0% | |
| GAAAACTGTTTGAACGAACA+TGG | - | chr5.4:15140944-15140963 | None:intergenic | 35.0% | |
| GAAATTTGTGGAAGAGTTGT+TGG | + | chr5.4:15141157-15141176 | MS.gene67546:CDS | 35.0% | |
| GAACATCATCACACTAACAT+AGG | + | chr5.4:15141772-15141791 | MS.gene67546:intron | 35.0% | |
| GAACTGTAATCACTGCAATA+AGG | - | chr5.4:15141430-15141449 | None:intergenic | 35.0% | |
| GATATGCAAGATCAAGACAT+GGG | + | chr5.4:15141004-15141023 | MS.gene67546:CDS | 35.0% | |
| GATGTTCAATAGATGAACTC+TGG | - | chr5.4:15141759-15141778 | None:intergenic | 35.0% | |
| GGAAGGTTCAAATGTTTCAA+AGG | + | chr5.4:15141646-15141665 | MS.gene67546:CDS | 35.0% | |
| GGAGAGTTTATTTAGGAGAT+TGG | + | chr5.4:15141727-15141746 | MS.gene67546:CDS | 35.0% | |
| TCCAACCAAGAAAGACAAAA+TGG | - | chr5.4:15141492-15141511 | None:intergenic | 35.0% | |
| TCTTGTCATTCCAATTTCCA+GGG | + | chr5.4:15142474-15142493 | MS.gene67546:intron | 35.0% | |
| TGGATCTTCATCAAAGTCAA+AGG | + | chr5.4:15141508-15141527 | MS.gene67546:CDS | 35.0% | |
| TGTTCTATTCTTGTGGTGTT+AGG | - | chr5.4:15140981-15141000 | None:intergenic | 35.0% | |
| TTCTTGTCATTCCAATTTCC+AGG | + | chr5.4:15142473-15142492 | MS.gene67546:intron | 35.0% | |
| TTTCAATGAATTGGAGTGTG+TGG | + | chr5.4:15141598-15141617 | MS.gene67546:CDS | 35.0% | |
| ! | ACTAACATAGGGATCTTTTG+AGG | + | chr5.4:15141784-15141803 | MS.gene67546:intron | 35.0% |
| ! | ATGGCTTGGAGAGTTTATTT+AGG | + | chr5.4:15141720-15141739 | MS.gene67546:CDS | 35.0% |
| ! | GGATAGTTCAGTCAGAATTT+TGG | + | chr5.4:15141178-15141197 | MS.gene67546:CDS | 35.0% |
| ! | TCCATTTTGTCTTTCTTGGT+TGG | + | chr5.4:15141488-15141507 | MS.gene67546:CDS | 35.0% |
| !! | CATCTTTGAGAACCCTTTTA+AGG | + | chr5.4:15141624-15141643 | MS.gene67546:CDS | 35.0% |
| !! | GGCTACTTTGTCTTGATTTT+AGG | - | chr5.4:15142119-15142138 | None:intergenic | 35.0% |
| !! | TGGTGATGGAATTTATCAGT+AGG | - | chr5.4:15142145-15142164 | None:intergenic | 35.0% |
| !! | TTTTGTCACTTCCAACCATT+TGG | - | chr5.4:15141537-15141556 | None:intergenic | 35.0% |
| ATCAGATGTGGATGTTGATG+TGG | - | chr5.4:15141033-15141052 | None:intergenic | 40.0% | |
| ATTGTCAGAGTTCTCTTCAC+AGG | - | chr5.4:15141579-15141598 | None:intergenic | 40.0% | |
| CAAAGTCAAAGGCAACCAAA+TGG | + | chr5.4:15141519-15141538 | MS.gene67546:CDS | 40.0% | |
| CCACAAATTTCTCACCTTGA+TGG | - | chr5.4:15141148-15141167 | None:intergenic | 40.0% | |
| CCATCAAGGTGAGAAATTTG+TGG | + | chr5.4:15141145-15141164 | MS.gene67546:CDS | 40.0% | |
| GGATATATGTGGCATCACAA+GGG | + | chr5.4:15141199-15141218 | MS.gene67546:CDS | 40.0% | |
| GTGTTAGGATGTGATTGAGA+AGG | - | chr5.4:15140966-15140985 | None:intergenic | 40.0% | |
| TCAGCTCTTAGAAGGAGAAA+GGG | + | chr5.4:15141263-15141282 | MS.gene67546:CDS | 40.0% | |
| TGCACAATTTCTCTTGGTGA+TGG | - | chr5.4:15142159-15142178 | None:intergenic | 40.0% | |
| TGGATATATGTGGCATCACA+AGG | + | chr5.4:15141198-15141217 | MS.gene67546:CDS | 40.0% | |
| ! | TAAGGGTGCACAATTTCTCT+TGG | - | chr5.4:15142165-15142184 | None:intergenic | 40.0% |
| ! | TATGCTGCTTGGACTCAAAA+TGG | + | chr5.4:15142609-15142628 | MS.gene67546:CDS | 40.0% |
| !! | AAGGCTATTTCTCACCATCA+AGG | + | chr5.4:15141131-15141150 | MS.gene67546:CDS | 40.0% |
| !! | TTGAGAACCCTTTTAAGGGA+AGG | + | chr5.4:15141629-15141648 | MS.gene67546:CDS | 40.0% |
| CTCAGCTCTTAGAAGGAGAA+AGG | + | chr5.4:15141262-15141281 | MS.gene67546:CDS | 45.0% | |
| GTCAAAGGCAACCAAATGGT+TGG | + | chr5.4:15141523-15141542 | MS.gene67546:CDS | 45.0% | |
| TGCATTGTATAGGGGTTCAC+CGG | + | chr5.4:15142564-15142583 | MS.gene67546:intron | 45.0% | |
| ! | CCTTCTAAGAGCTGAGTGAA+GGG | - | chr5.4:15141258-15141277 | None:intergenic | 45.0% |
| ! | TCCTTCTAAGAGCTGAGTGA+AGG | - | chr5.4:15141259-15141278 | None:intergenic | 45.0% |
| ! | TTTTGCAGGGTTGTCAGCTT+GGG | + | chr5.4:15142378-15142397 | MS.gene67546:intron | 45.0% |
| ! | TTTTTGCAGGGTTGTCAGCT+TGG | + | chr5.4:15142377-15142396 | MS.gene67546:intron | 45.0% |
| AGGGTTGTCAGCTTGGGAAT+AGG | + | chr5.4:15142384-15142403 | MS.gene67546:intron | 50.0% | |
| CCCTTCACTCAGCTCTTAGA+AGG | + | chr5.4:15141255-15141274 | MS.gene67546:CDS | 50.0% | |
| GCTTGGGAATAGGTCTGTGA+TGG | + | chr5.4:15142394-15142413 | MS.gene67546:CDS | 50.0% | |
| TAGCTGGTGGTTATGCTGCT+TGG | + | chr5.4:15142598-15142617 | MS.gene67546:CDS | 50.0% | |
| ACCAGCTATGTCTGCGAGTC+CGG | - | chr5.4:15142586-15142605 | None:intergenic | 55.0% | |
| ACCGGACTCGCAGACATAGC+TGG | + | chr5.4:15142582-15142601 | MS.gene67546:CDS | 60.0% | |
| GGACTCGCAGACATAGCTGG+TGG | + | chr5.4:15142585-15142604 | MS.gene67546:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 15140927 | 15142650 | 15140927 | ID=MS.gene67546 |
| chr5.4 | mRNA | 15140927 | 15142650 | 15140927 | ID=MS.gene67546.t1;Parent=MS.gene67546 |
| chr5.4 | exon | 15140927 | 15141748 | 15140927 | ID=MS.gene67546.t1.exon1;Parent=MS.gene67546.t1 |
| chr5.4 | CDS | 15140927 | 15141748 | 15140927 | ID=cds.MS.gene67546.t1;Parent=MS.gene67546.t1 |
| chr5.4 | exon | 15142386 | 15142439 | 15142386 | ID=MS.gene67546.t1.exon2;Parent=MS.gene67546.t1 |
| chr5.4 | CDS | 15142386 | 15142439 | 15142386 | ID=cds.MS.gene67546.t1;Parent=MS.gene67546.t1 |
| chr5.4 | exon | 15142576 | 15142650 | 15142576 | ID=MS.gene67546.t1.exon3;Parent=MS.gene67546.t1 |
| chr5.4 | CDS | 15142576 | 15142650 | 15142576 | ID=cds.MS.gene67546.t1;Parent=MS.gene67546.t1 |
| Gene Sequence |
| Protein sequence |
