Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67547.t1 | XP_024639649.1 | 95.4 | 280 | 13 | 0 | 1 | 280 | 1 | 280 | 5.70E-138 | 500.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67547.t1 | G7JZZ6 | 95.4 | 280 | 13 | 0 | 1 | 280 | 1 | 280 | 4.1e-138 | 500.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67547.t1 | MTR_5g023580 | 95.357 | 280 | 13 | 0 | 1 | 280 | 1 | 280 | 0.0 | 516 |
| MS.gene67547.t1 | MTR_5g023350 | 82.867 | 286 | 45 | 2 | 1 | 286 | 1 | 282 | 2.89e-163 | 458 |
| MS.gene67547.t1 | MTR_5g023320 | 83.275 | 287 | 40 | 4 | 1 | 286 | 1 | 280 | 5.50e-162 | 455 |
| MS.gene67547.t1 | MTR_5g023340 | 82.517 | 286 | 46 | 2 | 1 | 286 | 1 | 282 | 2.60e-161 | 453 |
| MS.gene67547.t1 | MTR_5g023390 | 81.469 | 286 | 49 | 2 | 1 | 286 | 1 | 282 | 6.70e-160 | 450 |
| MS.gene67547.t1 | MTR_5g023600 | 81.818 | 286 | 48 | 2 | 1 | 286 | 1 | 282 | 7.12e-159 | 447 |
| MS.gene67547.t1 | MTR_5g023370 | 80.070 | 286 | 53 | 2 | 1 | 286 | 1 | 282 | 2.47e-157 | 443 |
| MS.gene67547.t1 | MTR_5g023520 | 80.935 | 278 | 50 | 1 | 3 | 280 | 2 | 276 | 1.89e-155 | 439 |
| MS.gene67547.t1 | MTR_5g023530 | 79.443 | 287 | 54 | 3 | 1 | 286 | 1 | 283 | 2.45e-153 | 433 |
| MS.gene67547.t1 | MTR_5g023550 | 78.873 | 284 | 56 | 2 | 3 | 286 | 2 | 281 | 4.71e-152 | 430 |
| MS.gene67547.t1 | MTR_5g023470 | 78.397 | 287 | 57 | 3 | 1 | 286 | 1 | 283 | 4.43e-151 | 427 |
| MS.gene67547.t1 | MTR_8g074450 | 64.912 | 285 | 98 | 1 | 4 | 286 | 3 | 287 | 4.51e-128 | 369 |
| MS.gene67547.t1 | MTR_8g074510 | 62.544 | 283 | 102 | 2 | 6 | 286 | 5 | 285 | 1.69e-123 | 358 |
| MS.gene67547.t1 | MTR_8g074420 | 63.287 | 286 | 103 | 1 | 3 | 286 | 2 | 287 | 6.34e-120 | 348 |
| MS.gene67547.t1 | MTR_5g023460 | 76.471 | 187 | 36 | 3 | 100 | 286 | 11 | 189 | 9.38e-93 | 276 |
| MS.gene67547.t1 | MTR_8g074530 | 41.281 | 281 | 161 | 3 | 3 | 280 | 17 | 296 | 7.78e-62 | 201 |
| MS.gene67547.t1 | MTR_5g023290 | 37.671 | 292 | 168 | 5 | 3 | 280 | 9 | 300 | 2.51e-53 | 179 |
| MS.gene67547.t1 | MTR_5g023410 | 89.899 | 99 | 10 | 0 | 3 | 101 | 2 | 100 | 1.30e-50 | 169 |
| MS.gene67547.t1 | MTR_4g070530 | 31.655 | 278 | 183 | 2 | 7 | 280 | 13 | 287 | 3.44e-43 | 152 |
| MS.gene67547.t1 | MTR_5g023650 | 34.035 | 285 | 174 | 4 | 8 | 280 | 14 | 296 | 1.12e-40 | 145 |
| MS.gene67547.t1 | MTR_8g074380 | 34.483 | 290 | 158 | 6 | 1 | 280 | 7 | 274 | 1.01e-39 | 144 |
| MS.gene67547.t1 | MTR_3g116950 | 33.101 | 287 | 171 | 9 | 5 | 280 | 11 | 287 | 1.74e-36 | 134 |
| MS.gene67547.t1 | MTR_4g070540 | 30.797 | 276 | 188 | 3 | 7 | 280 | 13 | 287 | 2.84e-36 | 134 |
| MS.gene67547.t1 | MTR_4g070590 | 32.653 | 294 | 183 | 8 | 3 | 286 | 10 | 298 | 3.72e-36 | 134 |
| MS.gene67547.t1 | MTR_4g070570 | 30.208 | 288 | 186 | 7 | 3 | 280 | 12 | 294 | 1.01e-35 | 132 |
| MS.gene67547.t1 | MTR_3g116920 | 30.070 | 286 | 183 | 9 | 5 | 280 | 11 | 289 | 4.68e-30 | 117 |
| MS.gene67547.t1 | MTR_3g115150 | 27.211 | 294 | 182 | 10 | 6 | 280 | 27 | 307 | 1.11e-21 | 94.7 |
| MS.gene67547.t1 | MTR_1g037820 | 28.139 | 231 | 142 | 6 | 52 | 280 | 9 | 217 | 1.21e-17 | 81.6 |
| MS.gene67547.t1 | MTR_5g023540 | 56.522 | 69 | 26 | 1 | 163 | 231 | 1 | 65 | 1.33e-16 | 74.3 |
| MS.gene67547.t1 | MTR_8g030800 | 58.228 | 79 | 28 | 3 | 280 | 354 | 2149 | 2226 | 1.06e-14 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67547.t1 | AT4G35690 | 34.256 | 289 | 165 | 6 | 7 | 286 | 9 | 281 | 1.36e-48 | 166 |
| MS.gene67547.t1 | AT2G17080 | 34.420 | 276 | 156 | 5 | 5 | 280 | 4 | 254 | 1.01e-41 | 147 |
| MS.gene67547.t1 | AT2G17070 | 35.507 | 276 | 153 | 5 | 5 | 280 | 4 | 254 | 4.30e-41 | 145 |
| MS.gene67547.t1 | AT2G17680 | 35.254 | 295 | 162 | 10 | 7 | 286 | 9 | 289 | 2.04e-40 | 144 |
| MS.gene67547.t1 | AT4G35200 | 32.979 | 282 | 157 | 8 | 5 | 286 | 4 | 253 | 7.65e-39 | 139 |
| MS.gene67547.t1 | AT4G35710 | 33.218 | 289 | 167 | 6 | 7 | 286 | 9 | 280 | 4.63e-37 | 135 |
| MS.gene67547.t1 | AT4G35210 | 31.206 | 282 | 159 | 6 | 5 | 286 | 4 | 250 | 6.68e-36 | 131 |
| MS.gene67547.t1 | AT4G35720 | 33.032 | 221 | 133 | 6 | 6 | 215 | 14 | 230 | 3.67e-23 | 99.0 |
| MS.gene67547.t1 | AT4G35680 | 35.897 | 195 | 111 | 4 | 8 | 194 | 18 | 206 | 2.98e-21 | 93.6 |
| MS.gene67547.t1 | AT1G76240 | 27.526 | 287 | 182 | 8 | 5 | 280 | 28 | 299 | 9.19e-21 | 92.0 |
| MS.gene67547.t1 | AT4G35660 | 34.848 | 198 | 116 | 7 | 7 | 194 | 13 | 207 | 1.15e-19 | 88.6 |
| MS.gene67547.t1 | AT3G51400 | 29.825 | 285 | 169 | 10 | 5 | 280 | 4 | 266 | 1.28e-15 | 76.6 |
| MS.gene67547.t1 | AT3G51410 | 29.603 | 277 | 147 | 9 | 8 | 280 | 39 | 271 | 6.77e-13 | 68.9 |
| MS.gene67547.t1 | AT1G76210 | 25.571 | 219 | 142 | 6 | 68 | 286 | 26 | 223 | 1.27e-12 | 67.0 |
Find 79 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTGAACCTTCTCTTAAA+AGG | 0.130949 | 5.4:-15152110 | None:intergenic |
| TCAATCCCTTCTGTCTTTCT+TGG | 0.146590 | 5.4:+15151954 | MS.gene67547:CDS |
| AAACATATGGAATGTAAATT+TGG | 0.150260 | 5.4:+15151844 | MS.gene67547:CDS |
| AAAGCCAGCACTTCAATTTC+TGG | 0.154428 | 5.4:+15153060 | MS.gene67547:CDS |
| GGCTTCCCATGTCTTAATTT+TGG | 0.204721 | 5.4:-15151479 | None:intergenic |
| CGAGCTGCGAGATGGCTTAA+AGG | 0.226558 | 5.4:+15153281 | MS.gene67547:CDS |
| TGAAGATTTGTATATTTCTT+TGG | 0.249422 | 5.4:+15151549 | MS.gene67547:CDS |
| CTCCTTGCTAGCAGCATTAC+TGG | 0.264698 | 5.4:-15153238 | None:intergenic |
| GGATGGTTCAGTGAAAATTT+TGG | 0.269131 | 5.4:+15151648 | MS.gene67547:CDS |
| TGTTCTATTCTTGTGGAGTT+AGG | 0.269345 | 5.4:-15151448 | None:intergenic |
| GCAGTTGAAATGATAGAAAA+TGG | 0.276517 | 5.4:+15152174 | MS.gene67547:CDS |
| TCCCTTCTGTCTTTCTTGGT+TGG | 0.372129 | 5.4:+15151958 | MS.gene67547:CDS |
| GATCACATCTTTAAAACATA+TGG | 0.381463 | 5.4:+15151831 | MS.gene67547:CDS |
| GAGCTGCGAGATGGCTTAAA+GGG | 0.384939 | 5.4:+15153282 | MS.gene67547:CDS |
| GAAATTTGTTGAAGAGTTGT+TGG | 0.385629 | 5.4:+15151627 | MS.gene67547:CDS |
| CACTTCACTCTGCTCTTAGA+AGG | 0.386439 | 5.4:+15151725 | MS.gene67547:CDS |
| AATACAACAGGACAATGAAT+TGG | 0.388858 | 5.4:+15153164 | MS.gene67547:CDS |
| ATGGTTTGGAGAATGTATTC+AGG | 0.393957 | 5.4:+15152193 | MS.gene67547:CDS |
| CAACAAATTTCTCACCTTGA+CGG | 0.400296 | 5.4:-15151615 | None:intergenic |
| CTGGCTTTAAAGAAATGAAT+TGG | 0.403272 | 5.4:-15153045 | None:intergenic |
| TAACTCTTGTTCTATTCTTG+TGG | 0.407127 | 5.4:-15151455 | None:intergenic |
| TGGCTTTAACTCCTGTTGTT+CGG | 0.407314 | 5.4:+15153080 | MS.gene67547:CDS |
| TGAAATGATAGAAAATGGTT+TGG | 0.414105 | 5.4:+15152179 | MS.gene67547:CDS |
| CTAGCAATCCGGCTCTATCA+AGG | 0.419398 | 5.4:+15153112 | MS.gene67547:CDS |
| ATTTGAACCTTCTCTTAAAA+GGG | 0.423698 | 5.4:-15152109 | None:intergenic |
| GATGGCTTAAAGGGGCTGTA+AGG | 0.435095 | 5.4:+15153291 | MS.gene67547:CDS |
| ATAGAGCCGGATTGCTAGAA+AGG | 0.447219 | 5.4:-15153107 | None:intergenic |
| ACGTGAAAGATTTGAGGCTT+TGG | 0.459544 | 5.4:+15152146 | MS.gene67547:CDS |
| AGAAAGGGTAGCCGAACAAC+AGG | 0.465513 | 5.4:-15153091 | None:intergenic |
| GGCTACCCTTTCTAGCAATC+CGG | 0.469582 | 5.4:+15153101 | MS.gene67547:CDS |
| AATCTCATGTGAAGAGAAGT+TGG | 0.471471 | 5.4:+15152044 | MS.gene67547:CDS |
| CAATATGTCATCAACACAAA+AGG | 0.479628 | 5.4:+15151582 | MS.gene67547:CDS |
| AAAGCCAGAAATTGAAGTGC+TGG | 0.480008 | 5.4:-15153064 | None:intergenic |
| ATGAATTGGAAATTGATCCT+TGG | 0.483386 | 5.4:+15153178 | MS.gene67547:CDS |
| TGGATATTTGCGGCATCACA+AGG | 0.494065 | 5.4:+15151668 | MS.gene67547:CDS |
| TTAAAGAAATGAATTGGTAC+AGG | 0.497378 | 5.4:-15153039 | None:intergenic |
| GGAGAATGTATTCAGGCGTA+TGG | 0.499487 | 5.4:+15152200 | MS.gene67547:CDS |
| ATCGCGGAAGTCAATACAAC+AGG | 0.501355 | 5.4:+15153152 | MS.gene67547:CDS |
| AATATACAAATCTTCAAGAA+AGG | 0.505581 | 5.4:-15151542 | None:intergenic |
| AGAAGGTTCAAATGTTTCAA+AGG | 0.515818 | 5.4:+15152119 | MS.gene67547:CDS |
| CTCTGCTCTTAGAAGGAGAA+AGG | 0.522599 | 5.4:+15151732 | MS.gene67547:CDS |
| GGATGCACGTGAAAGATTTG+AGG | 0.524031 | 5.4:+15152140 | MS.gene67547:CDS |
| CTAGCAGCATTACTGGGAGA+AGG | 0.533208 | 5.4:-15153231 | None:intergenic |
| TCTGCAACCCTTGATAGAGC+CGG | 0.533540 | 5.4:-15153120 | None:intergenic |
| AAGAAATGAATTGGTACAGG+TGG | 0.537003 | 5.4:-15153036 | None:intergenic |
| AAATGAATTGGTACAGGTGG+AGG | 0.539800 | 5.4:-15153033 | None:intergenic |
| TCCCAGTAATGCTGCTAGCA+AGG | 0.540103 | 5.4:+15153236 | MS.gene67547:CDS |
| TTCAAGAAAGGAAAGGCCAT+TGG | 0.551737 | 5.4:-15151530 | None:intergenic |
| GGCAACCAAATGGTTTAAAG+TGG | 0.552772 | 5.4:+15151999 | MS.gene67547:CDS |
| TCCTTGCTAGCAGCATTACT+GGG | 0.557010 | 5.4:-15153237 | None:intergenic |
| GAAAACTGTTTGAGCGAACA+TGG | 0.558238 | 5.4:-15151411 | None:intergenic |
| CTCACCTTGACGGTGAGCAA+TGG | 0.559285 | 5.4:-15151605 | None:intergenic |
| TCGCAGCTCGAAAGTTATCA+TGG | 0.559517 | 5.4:-15153268 | None:intergenic |
| ATGGCTTAAAGGGGCTGTAA+GGG | 0.559799 | 5.4:+15153292 | MS.gene67547:CDS |
| CAAAGTCAAAGGCAACCAAA+TGG | 0.562903 | 5.4:+15151989 | MS.gene67547:CDS |
| TAGCAATCCGGCTCTATCAA+GGG | 0.563965 | 5.4:+15153113 | MS.gene67547:CDS |
| TGGTTCTGCATCAAAGTCAA+AGG | 0.586052 | 5.4:+15151978 | MS.gene67547:CDS |
| TAATGCTGCTAGCAAGGAGA+TGG | 0.590641 | 5.4:+15153242 | MS.gene67547:CDS |
| TTATCTTCTAAAAGCGTCCA+AGG | 0.591472 | 5.4:-15153195 | None:intergenic |
| TAGCAGCATTACTGGGAGAA+GGG | 0.595041 | 5.4:-15153230 | None:intergenic |
| ATAACTTTCGAGCTGCGAGA+TGG | 0.597275 | 5.4:+15153273 | MS.gene67547:CDS |
| AACCAACCAAGAAAGACAGA+AGG | 0.599142 | 5.4:-15151960 | None:intergenic |
| TTTGTTGAAGAGTTGTTGGA+TGG | 0.600565 | 5.4:+15151631 | MS.gene67547:CDS |
| ACAAATCTTCAAGAAAGGAA+AGG | 0.601275 | 5.4:-15151537 | None:intergenic |
| AGTGATTACAGTTATTAGAG+AGG | 0.603135 | 5.4:+15151906 | MS.gene67547:CDS |
| TAGAGCCGGATTGCTAGAAA+GGG | 0.607341 | 5.4:-15153106 | None:intergenic |
| GTTAACCAAAATTAAGACAT+GGG | 0.608808 | 5.4:+15151474 | MS.gene67547:CDS |
| ATCAGATGTGGATGTTGATG+TGG | 0.611639 | 5.4:-15151500 | None:intergenic |
| AAGGCCATTGCTCACCGTCA+AGG | 0.611754 | 5.4:+15151601 | MS.gene67547:CDS |
| AGTTAACCAAAATTAAGACA+TGG | 0.616346 | 5.4:+15151473 | MS.gene67547:CDS |
| ACATCTGATTCAATTACCAA+TGG | 0.619749 | 5.4:+15151514 | MS.gene67547:CDS |
| ATTGGTAATTGAATCAGATG+TGG | 0.626315 | 5.4:-15151512 | None:intergenic |
| GAGTTAGGATGTGATTGAGA+AGG | 0.634141 | 5.4:-15151433 | None:intergenic |
| TTGATCTTGATTCAAAAGCG+AGG | 0.637436 | 5.4:-15151872 | None:intergenic |
| GGATATTTGCGGCATCACAA+GGG | 0.649419 | 5.4:+15151669 | MS.gene67547:CDS |
| ACCAACCAAGAAAGACAGAA+GGG | 0.651763 | 5.4:-15151959 | None:intergenic |
| TAACTGTAATCACTGCAACA+AGG | 0.659068 | 5.4:-15151897 | None:intergenic |
| AGCTGCGAGATGGCTTAAAG+GGG | 0.659698 | 5.4:+15153283 | MS.gene67547:CDS |
| TTGCAGATAATAATGCATCG+CGG | 0.798487 | 5.4:+15153136 | MS.gene67547:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAAAAACAGTATTAA+TGG | + | chr5.4:15152694-15152713 | MS.gene67547:intron | 15.0% |
| !! | AAACATATGGAATGTAAATT+TGG | + | chr5.4:15151844-15151863 | MS.gene67547:CDS | 20.0% |
| !! | AATATACAAATCTTCAAGAA+AGG | - | chr5.4:15151545-15151564 | None:intergenic | 20.0% |
| !! | ATAATCAGTATCTTAAATCA+CGG | + | chr5.4:15152630-15152649 | MS.gene67547:intron | 20.0% |
| !! | GTATTTATGTACAAATTAAC+TGG | - | chr5.4:15152297-15152316 | None:intergenic | 20.0% |
| !! | TGAAGATTTGTATATTTCTT+TGG | + | chr5.4:15151549-15151568 | MS.gene67547:CDS | 20.0% |
| !!! | ATTTTCTTTAATTTGTGACA+CGG | - | chr5.4:15151698-15151717 | None:intergenic | 20.0% |
| ! | AGTTAACCAAAATTAAGACA+TGG | + | chr5.4:15151473-15151492 | MS.gene67547:CDS | 25.0% |
| ! | ATGATCAAATTGTTACTGTT+CGG | - | chr5.4:15152822-15152841 | None:intergenic | 25.0% |
| ! | ATTTGAACCTTCTCTTAAAA+GGG | - | chr5.4:15152112-15152131 | None:intergenic | 25.0% |
| ! | GTTAACCAAAATTAAGACAT+GGG | + | chr5.4:15151474-15151493 | MS.gene67547:CDS | 25.0% |
| ! | TGAAATGATAGAAAATGGTT+TGG | + | chr5.4:15152179-15152198 | MS.gene67547:CDS | 25.0% |
| ! | TTAAAGAAATGAATTGGTAC+AGG | - | chr5.4:15153042-15153061 | None:intergenic | 25.0% |
| ! | TTTATTGATGCAAAATGACT+TGG | + | chr5.4:15152919-15152938 | MS.gene67547:intron | 25.0% |
| !! | AATCAGTTATTGTAGTTTTC+AGG | - | chr5.4:15152428-15152447 | None:intergenic | 25.0% |
| !! | CTGTAATTTTTGCATTTATG+CGG | + | chr5.4:15152993-15153012 | MS.gene67547:intron | 25.0% |
| !! | GTGAAAATTTTGGATATTTG+CGG | + | chr5.4:15151658-15151677 | MS.gene67547:CDS | 25.0% |
| !! | TTAAGATACTGATTATGTCT+TGG | - | chr5.4:15152626-15152645 | None:intergenic | 25.0% |
| !!! | CATCATCTTTGATTTTATGT+TGG | - | chr5.4:15152580-15152599 | None:intergenic | 25.0% |
| !!! | GATCACATCTTTAAAACATA+TGG | + | chr5.4:15151831-15151850 | MS.gene67547:CDS | 25.0% |
| AATACAACAGGACAATGAAT+TGG | + | chr5.4:15153164-15153183 | MS.gene67547:CDS | 30.0% | |
| ACAAATCTTCAAGAAAGGAA+AGG | - | chr5.4:15151540-15151559 | None:intergenic | 30.0% | |
| ACATCTGATTCAATTACCAA+TGG | + | chr5.4:15151514-15151533 | MS.gene67547:CDS | 30.0% | |
| AGAAGGTTCAAATGTTTCAA+AGG | + | chr5.4:15152119-15152138 | MS.gene67547:CDS | 30.0% | |
| AGTGATTACAGTTATTAGAG+AGG | + | chr5.4:15151906-15151925 | MS.gene67547:CDS | 30.0% | |
| ATCAAGTTCAAGTGTATTAG+TGG | - | chr5.4:15152855-15152874 | None:intergenic | 30.0% | |
| ATGAATTGGAAATTGATCCT+TGG | + | chr5.4:15153178-15153197 | MS.gene67547:CDS | 30.0% | |
| CAATATGTCATCAACACAAA+AGG | + | chr5.4:15151582-15151601 | MS.gene67547:CDS | 30.0% | |
| CATTTGAACCTTCTCTTAAA+AGG | - | chr5.4:15152113-15152132 | None:intergenic | 30.0% | |
| CGCATAAATGCAAAAATTAC+AGG | - | chr5.4:15152995-15153014 | None:intergenic | 30.0% | |
| GCAGTTGAAATGATAGAAAA+TGG | + | chr5.4:15152174-15152193 | MS.gene67547:CDS | 30.0% | |
| TAACTCTTGTTCTATTCTTG+TGG | - | chr5.4:15151458-15151477 | None:intergenic | 30.0% | |
| TCAAGTTCAAGTGTATTAGT+GGG | - | chr5.4:15152854-15152873 | None:intergenic | 30.0% | |
| ! | ATTGGTAATTGAATCAGATG+TGG | - | chr5.4:15151515-15151534 | None:intergenic | 30.0% |
| !! | CATCTTTGATTTTATGTTGG+TGG | - | chr5.4:15152577-15152596 | None:intergenic | 30.0% |
| !! | CTGGCTTTAAAGAAATGAAT+TGG | - | chr5.4:15153048-15153067 | None:intergenic | 30.0% |
| !! | GAAATTTGTTGAAGAGTTGT+TGG | + | chr5.4:15151627-15151646 | MS.gene67547:CDS | 30.0% |
| !!! | TTTTGCCACTTTAAACCATT+TGG | - | chr5.4:15152007-15152026 | None:intergenic | 30.0% |
| AAGAAATGAATTGGTACAGG+TGG | - | chr5.4:15153039-15153058 | None:intergenic | 35.0% | |
| AAGTTCAAGTGTATTAGTGG+GGG | - | chr5.4:15152852-15152871 | None:intergenic | 35.0% | |
| AATCTCATGTGAAGAGAAGT+TGG | + | chr5.4:15152044-15152063 | MS.gene67547:CDS | 35.0% | |
| ATCTTAAATCACGGAAGGAT+GGG | + | chr5.4:15152639-15152658 | MS.gene67547:intron | 35.0% | |
| CAACAAATTTCTCACCTTGA+CGG | - | chr5.4:15151618-15151637 | None:intergenic | 35.0% | |
| CAAGTTCAAGTGTATTAGTG+GGG | - | chr5.4:15152853-15152872 | None:intergenic | 35.0% | |
| CTCTATCTTAGAGATCTACT+AGG | + | chr5.4:15152256-15152275 | MS.gene67547:intron | 35.0% | |
| TAACTGTAATCACTGCAACA+AGG | - | chr5.4:15151900-15151919 | None:intergenic | 35.0% | |
| TATCTTAAATCACGGAAGGA+TGG | + | chr5.4:15152638-15152657 | MS.gene67547:intron | 35.0% | |
| TCAGTATCTTAAATCACGGA+AGG | + | chr5.4:15152634-15152653 | MS.gene67547:intron | 35.0% | |
| TGCAAGCTCAAACAAAAAAG+TGG | + | chr5.4:15152549-15152568 | MS.gene67547:intron | 35.0% | |
| TGTTCTATTCTTGTGGAGTT+AGG | - | chr5.4:15151451-15151470 | None:intergenic | 35.0% | |
| TTGATCTTGATTCAAAAGCG+AGG | - | chr5.4:15151875-15151894 | None:intergenic | 35.0% | |
| TTGCAGATAATAATGCATCG+CGG | + | chr5.4:15153136-15153155 | MS.gene67547:CDS | 35.0% | |
| TTTGTTGAAGAGTTGTTGGA+TGG | + | chr5.4:15151631-15151650 | MS.gene67547:CDS | 35.0% | |
| ! | AAATTACAGGCATTGCATCT+TGG | - | chr5.4:15152982-15153001 | None:intergenic | 35.0% |
| ! | ATGGTTTGGAGAATGTATTC+AGG | + | chr5.4:15152193-15152212 | MS.gene67547:CDS | 35.0% |
| ! | GGATGGTTCAGTGAAAATTT+TGG | + | chr5.4:15151648-15151667 | MS.gene67547:CDS | 35.0% |
| ! | TACTGATTATGTCTTGGTGT+TGG | - | chr5.4:15152620-15152639 | None:intergenic | 35.0% |
| ! | TGGTGTTGGAATTCATTTGT+TGG | - | chr5.4:15152606-15152625 | None:intergenic | 35.0% |
| !! | TTATCTTCTAAAAGCGTCCA+AGG | - | chr5.4:15153198-15153217 | None:intergenic | 35.0% |
| !! | TTGAGAACCCTTTTAAGAGA+AGG | + | chr5.4:15152102-15152121 | MS.gene67547:CDS | 35.0% |
| AAAGCCAGAAATTGAAGTGC+TGG | - | chr5.4:15153067-15153086 | None:intergenic | 40.0% | |
| AAAGCCAGCACTTCAATTTC+TGG | + | chr5.4:15153060-15153079 | MS.gene67547:CDS | 40.0% | |
| AAATGAATTGGTACAGGTGG+AGG | - | chr5.4:15153036-15153055 | None:intergenic | 40.0% | |
| AACCAACCAAGAAAGACAGA+AGG | - | chr5.4:15151963-15151982 | None:intergenic | 40.0% | |
| AACTTTCAGACGCTATTTGG+TGG | + | chr5.4:15152951-15152970 | MS.gene67547:intron | 40.0% | |
| ACCAACCAAGAAAGACAGAA+GGG | - | chr5.4:15151962-15151981 | None:intergenic | 40.0% | |
| ATCAGATGTGGATGTTGATG+TGG | - | chr5.4:15151503-15151522 | None:intergenic | 40.0% | |
| CAAAGTCAAAGGCAACCAAA+TGG | + | chr5.4:15151989-15152008 | MS.gene67547:CDS | 40.0% | |
| GAAAACTGTTTGAGCGAACA+TGG | - | chr5.4:15151414-15151433 | None:intergenic | 40.0% | |
| GAGTTAGGATGTGATTGAGA+AGG | - | chr5.4:15151436-15151455 | None:intergenic | 40.0% | |
| GGCAACCAAATGGTTTAAAG+TGG | + | chr5.4:15151999-15152018 | MS.gene67547:CDS | 40.0% | |
| TCAATCCCTTCTGTCTTTCT+TGG | + | chr5.4:15151954-15151973 | MS.gene67547:CDS | 40.0% | |
| TGCAACTTTCAGACGCTATT+TGG | + | chr5.4:15152948-15152967 | MS.gene67547:intron | 40.0% | |
| TGTTCGGATGTATCATGTCT+TGG | - | chr5.4:15152806-15152825 | None:intergenic | 40.0% | |
| TTCAAGAAAGGAAAGGCCAT+TGG | - | chr5.4:15151533-15151552 | None:intergenic | 40.0% | |
| ! | ACGTGAAAGATTTGAGGCTT+TGG | + | chr5.4:15152146-15152165 | MS.gene67547:CDS | 40.0% |
| ! | GGCTTCCCATGTCTTAATTT+TGG | - | chr5.4:15151482-15151501 | None:intergenic | 40.0% |
| ! | TGGTTCTGCATCAAAGTCAA+AGG | + | chr5.4:15151978-15151997 | MS.gene67547:CDS | 40.0% |
| !! | ACGCTTTTAGAAGATAACGC+TGG | + | chr5.4:15153201-15153220 | MS.gene67547:CDS | 40.0% |
| !! | GAACTATAGTCGACTGGTTT+AGG | - | chr5.4:15152760-15152779 | None:intergenic | 40.0% |
| !! | TGGCTTTAACTCCTGTTGTT+CGG | + | chr5.4:15153080-15153099 | MS.gene67547:CDS | 40.0% |
| ATAACTTTCGAGCTGCGAGA+TGG | + | chr5.4:15153273-15153292 | MS.gene67547:CDS | 45.0% | |
| ATAGAGCCGGATTGCTAGAA+AGG | - | chr5.4:15153110-15153129 | None:intergenic | 45.0% | |
| ATCGCGGAAGTCAATACAAC+AGG | + | chr5.4:15153152-15153171 | MS.gene67547:CDS | 45.0% | |
| CACTTCACTCTGCTCTTAGA+AGG | + | chr5.4:15151725-15151744 | MS.gene67547:CDS | 45.0% | |
| CTCTGCTCTTAGAAGGAGAA+AGG | + | chr5.4:15151732-15151751 | MS.gene67547:CDS | 45.0% | |
| GGAGAATGTATTCAGGCGTA+TGG | + | chr5.4:15152200-15152219 | MS.gene67547:CDS | 45.0% | |
| GGATATTTGCGGCATCACAA+GGG | + | chr5.4:15151669-15151688 | MS.gene67547:CDS | 45.0% | |
| GGATGCACGTGAAAGATTTG+AGG | + | chr5.4:15152140-15152159 | MS.gene67547:CDS | 45.0% | |
| GTTGCAGAACTATAGTCGAC+TGG | - | chr5.4:15152766-15152785 | None:intergenic | 45.0% | |
| TAATGCTGCTAGCAAGGAGA+TGG | + | chr5.4:15153242-15153261 | MS.gene67547:CDS | 45.0% | |
| TAGAGCCGGATTGCTAGAAA+GGG | - | chr5.4:15153109-15153128 | None:intergenic | 45.0% | |
| TAGCAATCCGGCTCTATCAA+GGG | + | chr5.4:15153113-15153132 | MS.gene67547:CDS | 45.0% | |
| TAGCAGCATTACTGGGAGAA+GGG | - | chr5.4:15153233-15153252 | None:intergenic | 45.0% | |
| TCCCTTCTGTCTTTCTTGGT+TGG | + | chr5.4:15151958-15151977 | MS.gene67547:CDS | 45.0% | |
| TCCTTGCTAGCAGCATTACT+GGG | - | chr5.4:15153240-15153259 | None:intergenic | 45.0% | |
| TCGCAGCTCGAAAGTTATCA+TGG | - | chr5.4:15153271-15153290 | None:intergenic | 45.0% | |
| TGGATATTTGCGGCATCACA+AGG | + | chr5.4:15151668-15151687 | MS.gene67547:CDS | 45.0% | |
| !! | GGAAGGATGGGTATTGAGTT+CGG | + | chr5.4:15152651-15152670 | MS.gene67547:intron | 45.0% |
| AGAAAGGGTAGCCGAACAAC+AGG | - | chr5.4:15153094-15153113 | None:intergenic | 50.0% | |
| AGCTGCGAGATGGCTTAAAG+GGG | + | chr5.4:15153283-15153302 | MS.gene67547:CDS | 50.0% | |
| CTAGCAATCCGGCTCTATCA+AGG | + | chr5.4:15153112-15153131 | MS.gene67547:CDS | 50.0% | |
| CTAGCAGCATTACTGGGAGA+AGG | - | chr5.4:15153234-15153253 | None:intergenic | 50.0% | |
| CTCCTTGCTAGCAGCATTAC+TGG | - | chr5.4:15153241-15153260 | None:intergenic | 50.0% | |
| GAGCTGCGAGATGGCTTAAA+GGG | + | chr5.4:15153282-15153301 | MS.gene67547:CDS | 50.0% | |
| TCAAGTGTATTAGTGGGGGC+TGG | - | chr5.4:15152848-15152867 | None:intergenic | 50.0% | |
| TCCCAGTAATGCTGCTAGCA+AGG | + | chr5.4:15153236-15153255 | MS.gene67547:CDS | 50.0% | |
| TCTGCAACCCTTGATAGAGC+CGG | - | chr5.4:15153123-15153142 | None:intergenic | 50.0% | |
| ! | GGCTACCCTTTCTAGCAATC+CGG | + | chr5.4:15153101-15153120 | MS.gene67547:CDS | 50.0% |
| AAGGCCATTGCTCACCGTCA+AGG | + | chr5.4:15151601-15151620 | MS.gene67547:CDS | 55.0% | |
| CGAGCTGCGAGATGGCTTAA+AGG | + | chr5.4:15153281-15153300 | MS.gene67547:CDS | 55.0% | |
| CTCACCTTGACGGTGAGCAA+TGG | - | chr5.4:15151608-15151627 | None:intergenic | 55.0% | |
| GTGGAGGCTGCAAGAGAAAG+AGG | - | chr5.4:15153020-15153039 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 15151394 | 15153311 | 15151394 | ID=MS.gene67547 |
| chr5.4 | mRNA | 15151394 | 15153311 | 15151394 | ID=MS.gene67547.t1;Parent=MS.gene67547 |
| chr5.4 | exon | 15151394 | 15152233 | 15151394 | ID=MS.gene67547.t1.exon1;Parent=MS.gene67547.t1 |
| chr5.4 | CDS | 15151394 | 15152233 | 15151394 | ID=cds.MS.gene67547.t1;Parent=MS.gene67547.t1 |
| chr5.4 | exon | 15153033 | 15153311 | 15153033 | ID=MS.gene67547.t1.exon2;Parent=MS.gene67547.t1 |
| chr5.4 | CDS | 15153033 | 15153311 | 15153033 | ID=cds.MS.gene67547.t1;Parent=MS.gene67547.t1 |
| Gene Sequence |
| Protein sequence |
