AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67577

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67577.t1 MTR_5g023580 93.214 280 19 0 1 280 1 280 1.79e-180 505
MS.gene67577.t1 MTR_5g023350 83.217 286 44 2 1 286 1 282 3.56e-163 458
MS.gene67577.t1 MTR_5g023320 81.882 287 44 4 1 286 1 280 5.49e-159 447
MS.gene67577.t1 MTR_5g023340 81.469 286 49 2 1 286 1 282 1.39e-158 446
MS.gene67577.t1 MTR_5g023600 81.469 286 49 2 1 286 1 282 1.90e-157 444
MS.gene67577.t1 MTR_5g023390 80.070 286 53 2 1 286 1 282 1.12e-156 442
MS.gene67577.t1 MTR_5g023370 78.671 286 57 2 1 286 1 282 3.38e-154 436
MS.gene67577.t1 MTR_5g023520 80.576 278 51 1 3 280 2 276 3.80e-154 435
MS.gene67577.t1 MTR_5g023530 78.746 287 56 3 1 286 1 283 8.54e-153 432
MS.gene67577.t1 MTR_5g023550 78.521 284 57 2 3 286 2 281 1.01e-150 427
MS.gene67577.t1 MTR_5g023470 77.700 287 59 3 1 286 1 283 1.92e-150 426
MS.gene67577.t1 MTR_8g074450 64.561 285 99 1 4 286 3 287 1.81e-127 368
MS.gene67577.t1 MTR_8g074510 61.837 283 104 2 6 286 5 285 5.26e-122 354
MS.gene67577.t1 MTR_8g074420 63.636 286 102 1 3 286 2 287 9.71e-120 348
MS.gene67577.t1 MTR_5g023460 75.936 187 37 3 100 286 11 189 3.58e-92 274
MS.gene67577.t1 MTR_8g074530 40.569 281 163 3 3 280 17 296 5.26e-60 196
MS.gene67577.t1 MTR_5g023290 36.986 292 170 5 3 280 9 300 2.96e-51 173
MS.gene67577.t1 MTR_5g023410 89.899 99 10 0 3 101 2 100 6.31e-50 167
MS.gene67577.t1 MTR_4g070530 30.935 278 185 2 7 280 13 287 1.92e-41 147
MS.gene67577.t1 MTR_5g023650 33.684 285 175 4 8 280 14 296 3.50e-40 144
MS.gene67577.t1 MTR_8g074380 33.793 290 160 6 1 280 7 274 4.62e-39 142
MS.gene67577.t1 MTR_4g070590 32.534 292 186 6 3 286 10 298 9.42e-37 135
MS.gene67577.t1 MTR_4g070540 30.435 276 189 3 7 280 13 287 7.24e-36 132
MS.gene67577.t1 MTR_4g070570 30.208 288 186 7 3 280 12 294 1.37e-35 132
MS.gene67577.t1 MTR_3g116950 32.281 285 176 8 5 280 11 287 1.70e-35 132
MS.gene67577.t1 MTR_3g116920 29.930 284 186 8 5 280 11 289 2.64e-30 118
MS.gene67577.t1 MTR_3g115150 26.441 295 185 10 5 280 26 307 3.65e-19 87.4
MS.gene67577.t1 MTR_1g037820 27.706 231 143 6 52 280 9 217 1.00e-17 81.6
MS.gene67577.t1 MTR_5g023540 55.072 69 27 1 163 231 1 65 8.78e-16 72.0
MS.gene67577.t1 MTR_8g030800 58.228 79 28 3 280 354 2149 2226 9.80e-15 76.6
MS.gene67577.t1 MTR_7g077700 59.091 66 23 2 296 360 2168 2230 4.59e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67577.t1 AT4G35690 34.948 289 163 6 7 286 9 281 1.63e-49 168
MS.gene67577.t1 AT2G17080 35.145 276 154 5 5 280 4 254 2.22e-42 149
MS.gene67577.t1 AT2G17680 35.593 295 161 10 7 286 9 289 2.37e-41 147
MS.gene67577.t1 AT2G17070 35.507 276 153 5 5 280 4 254 2.92e-40 143
MS.gene67577.t1 AT4G35710 34.708 291 160 8 7 286 9 280 3.85e-38 138
MS.gene67577.t1 AT4G35200 32.624 282 158 8 5 286 4 253 1.40e-37 136
MS.gene67577.t1 AT4G35210 31.206 282 159 7 5 286 4 250 1.17e-34 128
MS.gene67577.t1 AT4G35680 36.410 195 110 5 8 194 18 206 1.50e-21 94.4
MS.gene67577.t1 AT4G35720 32.127 221 135 6 6 215 14 230 8.00e-21 92.4
MS.gene67577.t1 AT4G35660 34.300 207 127 6 7 205 13 218 2.42e-20 90.5
MS.gene67577.t1 AT1G76240 27.113 284 187 7 5 280 28 299 4.41e-19 87.0
MS.gene67577.t1 AT3G51400 29.825 285 169 10 5 280 4 266 1.26e-15 76.6
MS.gene67577.t1 AT3G51410 30.686 277 144 10 8 280 39 271 2.75e-13 70.1
MS.gene67577.t1 AT1G76210 24.107 224 139 5 68 286 26 223 8.26e-13 67.8

Find 78 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTGAACCTTCTCTTAAA+AGG 0.130949 5.2:+14197044 None:intergenic
TCAATCCCTTCTGTCTTTCT+TGG 0.146590 5.2:-14197200 MS.gene67577:CDS
AAAGTCAGCACTACAATTTC+TGG 0.150234 5.2:-14196035 MS.gene67577:CDS
AAACATATGGAAACTAAATT+TGG 0.158363 5.2:-14197310 MS.gene67577:CDS
GTTGTTTGGCTACCCTTTCT+AGG 0.218921 5.2:-14196001 MS.gene67577:CDS
CGAGCTGCGAGATGGCTTAA+AGG 0.226558 5.2:-14195814 MS.gene67577:CDS
TGAAGATTTGTATATTTCTT+TGG 0.249422 5.2:-14197605 MS.gene67577:CDS
GGATGGTTCAGTGAAAATTT+TGG 0.269131 5.2:-14197506 MS.gene67577:CDS
TGTTCTATTCTTGTGGAGTT+AGG 0.269345 5.2:+14197706 None:intergenic
GCAGTTGAAATGATAGAAAA+TGG 0.276517 5.2:-14196980 MS.gene67577:CDS
TGGCTTTAACTCCTGTTGTT+TGG 0.323944 5.2:-14196015 MS.gene67577:CDS
GAAATTTGTGGAAGAGTTGT+TGG 0.365610 5.2:-14197527 MS.gene67577:CDS
TCCCTTCTGTCTTTCTTGGT+TGG 0.372129 5.2:-14197196 MS.gene67577:CDS
GATCACATCTTTAAAACATA+TGG 0.374642 5.2:-14197323 MS.gene67577:CDS
GGCTACCCTTTCTAGGAATC+CGG 0.375262 5.2:-14195994 MS.gene67577:CDS
GAGCTGCGAGATGGCTTAAA+GGG 0.384939 5.2:-14195813 MS.gene67577:CDS
CCACAAATTTCTCACCTTGA+CGG 0.385796 5.2:+14197539 None:intergenic
CACTTCACTCTGCTCTTAGA+AGG 0.386439 5.2:-14197429 MS.gene67577:CDS
AATACAACAGGACAATGAAT+TGG 0.388858 5.2:-14195931 MS.gene67577:CDS
TCCTTGCTAGCAGCATTACT+TGG 0.389591 5.2:+14195858 None:intergenic
CTGACTTTAAAGAAATGAAT+TGG 0.391417 5.2:+14196050 None:intergenic
ATGGTTTGGAGAATGTATTC+AGG 0.393957 5.2:-14196961 MS.gene67577:CDS
CTAGGAATCCGGCTCTATCA+AGG 0.412883 5.2:-14195983 MS.gene67577:CDS
TGAAATGATAGAAAATGGTT+TGG 0.414105 5.2:-14196975 MS.gene67577:CDS
ATTTGAACCTTCTCTTAAAA+GGG 0.423698 5.2:+14197045 None:intergenic
TAGCTCTTGTTCTATTCTTG+TGG 0.426456 5.2:+14197699 None:intergenic
GATGGCTTAAAGGGGCTGTA+AGG 0.435095 5.2:-14195804 None:intergenic
TGGATATCTGCGGCATTACA+AGG 0.456961 5.2:-14197486 MS.gene67577:CDS
ACGTGAAAGATTTGAGGCTT+TGG 0.459544 5.2:-14197008 MS.gene67577:CDS
CCGTCAAGGTGAGAAATTTG+TGG 0.469848 5.2:-14197539 MS.gene67577:CDS
AATCTCATGTGAAGAGAAGT+TGG 0.471471 5.2:-14197110 MS.gene67577:CDS
CAATATGTCATCAACACAAA+AGG 0.479628 5.2:-14197572 MS.gene67577:CDS
ATGAATTGGAAATTGATCCT+TGG 0.483386 5.2:-14195917 MS.gene67577:CDS
ATAGAGCCGGATTCCTAGAA+AGG 0.493694 5.2:+14195988 None:intergenic
CAAAGTCAAAGGCAACCAAT+TGG 0.497280 5.2:-14197165 MS.gene67577:CDS
GGCAACCAATTGGTTTAAAG+TGG 0.497640 5.2:-14197155 MS.gene67577:CDS
GGAGAATGTATTCAGGCGTA+TGG 0.499487 5.2:-14196954 MS.gene67577:CDS
ATCGCGGAAGTCAATACAAC+AGG 0.501355 5.2:-14195943 MS.gene67577:CDS
TTAAAGAAATGAATTGGTAC+AGG 0.504410 5.2:+14196056 None:intergenic
AATATACAAATCTTCAAGAA+AGG 0.505581 5.2:+14197612 None:intergenic
CTAGCAGCATTACTTGGAGA+AGG 0.510601 5.2:+14195864 None:intergenic
AGAAAGGGTAGCCAAACAAC+AGG 0.514127 5.2:+14196004 None:intergenic
AGAAGGTTCAAATGTTTCAA+AGG 0.515818 5.2:-14197035 MS.gene67577:CDS
CTCTGCTCTTAGAAGGAGAA+AGG 0.522599 5.2:-14197422 MS.gene67577:CDS
GGATGCACGTGAAAGATTTG+AGG 0.524031 5.2:-14197014 MS.gene67577:CDS
TCTGCAACCCTTGATAGAGC+CGG 0.533540 5.2:+14195975 None:intergenic
TCCAAGTAATGCTGCTAGCA+AGG 0.533842 5.2:-14195859 MS.gene67577:CDS
AAGAAATGAATTGGTACAGG+TGG 0.537003 5.2:+14196059 None:intergenic
AAATGAATTGGTACAGGTGG+AGG 0.539800 5.2:+14196062 None:intergenic
GAAAACTGTTTGAGCGAACA+TGG 0.558238 5.2:+14197743 None:intergenic
CTCACCTTGACGGTGAGCAA+TGG 0.559285 5.2:+14197549 None:intergenic
TCGCAGCTCGAAAGTTATCA+TGG 0.559517 5.2:+14195827 None:intergenic
ATGGCTTAAAGGGGCTGTAA+GGG 0.559799 5.2:-14195803 None:intergenic
TAGGAATCCGGCTCTATCAA+GGG 0.572124 5.2:-14195982 MS.gene67577:CDS
ACATCTGATTCAATTACCAC+TGG 0.584960 5.2:-14197640 MS.gene67577:CDS
TGGTTCTGCATCAAAGTCAA+AGG 0.586052 5.2:-14197176 MS.gene67577:CDS
GGATATCTGCGGCATTACAA+GGG 0.590581 5.2:-14197485 MS.gene67577:CDS
TAATGCTGCTAGCAAGGAGA+TGG 0.590641 5.2:-14195853 MS.gene67577:CDS
TTATCTTCTAAAAGCGTCCA+AGG 0.591472 5.2:+14195900 None:intergenic
TTCATCTTGATTCAAAAGCG+AGG 0.591703 5.2:+14197282 None:intergenic
TAGAGCCGGATTCCTAGAAA+GGG 0.594182 5.2:+14195989 None:intergenic
ATAACTTTCGAGCTGCGAGA+TGG 0.597275 5.2:-14195822 MS.gene67577:CDS
TAGCAGCATTACTTGGAGAA+GGG 0.597901 5.2:+14195865 None:intergenic
AACCAACCAAGAAAGACAGA+AGG 0.599142 5.2:+14197194 None:intergenic
ACAAATCTTCAAGAAAGGAA+AGG 0.601275 5.2:+14197617 None:intergenic
AGTGATTACAGTTATTAGAG+AGG 0.603135 5.2:-14197248 MS.gene67577:CDS
ATCAGATGTGGATGTTGATG+TGG 0.611639 5.2:+14197654 None:intergenic
AAGGCCATTGCTCACCGTCA+AGG 0.611754 5.2:-14197553 MS.gene67577:CDS
TTTGTGGAAGAGTTGTTGGA+TGG 0.615570 5.2:-14197523 MS.gene67577:CDS
GAGTTAGGATGTGATTGAGA+AGG 0.634141 5.2:+14197721 None:intergenic
ACCAACCAAGAAAGACAGAA+GGG 0.651763 5.2:+14197195 None:intergenic
AGCTATGCAAGATCAAGACA+TGG 0.654263 5.2:-14197681 MS.gene67577:CDS
TTCAAGAAAGGAAAGGCCAG+TGG 0.658882 5.2:+14197624 None:intergenic
TAACTGTAATCACTGCAACA+AGG 0.659068 5.2:+14197257 None:intergenic
AGTGGTAATTGAATCAGATG+TGG 0.659124 5.2:+14197642 None:intergenic
AGCTGCGAGATGGCTTAAAG+GGG 0.659698 5.2:-14195812 MS.gene67577:CDS
GCTATGCAAGATCAAGACAT+GGG 0.684944 5.2:-14197680 MS.gene67577:CDS
TTGCAGATAATAATGCATCG+CGG 0.798487 5.2:-14195959 MS.gene67577:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACATATGGAAACTAAATT+TGG - chr5.2:14196256-14196275 MS.gene67577:intron 20.0%
!! AAATTCAATGCAAAAATTAC+AGG + chr5.2:14197461-14197480 None:intergenic 20.0%
!! AAGCAAAAAAACAGTATTAA+TGG - chr5.2:14197108-14197127 MS.gene67577:CDS 20.0%
!! AATATACAAATCTTCAAGAA+AGG + chr5.2:14195957-14195976 None:intergenic 20.0%
!! ATAATCAGTATCTTAAATCA+CGG - chr5.2:14197043-14197062 MS.gene67577:CDS 20.0%
!! TGAAGATTTGTATATTTCTT+TGG - chr5.2:14195961-14195980 MS.gene67577:CDS 20.0%
!!! ATTTTCTTTAATTTGTGACA+TGG + chr5.2:14196110-14196129 None:intergenic 20.0%
!!! ATTTTTGCATTGAATTTATG+CGG - chr5.2:14197464-14197483 MS.gene67577:CDS 20.0%
!!! TTGTTTTGGTTTTTTTTTAC+TGG - chr5.2:14197290-14197309 MS.gene67577:CDS 20.0%
! ATTTGAACCTTCTCTTAAAA+GGG + chr5.2:14196524-14196543 None:intergenic 25.0%
! TGAAATGATAGAAAATGGTT+TGG - chr5.2:14196591-14196610 MS.gene67577:intron 25.0%
! TTAAAGAAATGAATTGGTAC+AGG + chr5.2:14197513-14197532 None:intergenic 25.0%
! TTTATTGATGCAAAATGACT+TGG - chr5.2:14197385-14197404 MS.gene67577:CDS 25.0%
!! AATCAGTTATTGTAGTTTTC+AGG + chr5.2:14196841-14196860 None:intergenic 25.0%
!! CTGACTTTAAAGAAATGAAT+TGG + chr5.2:14197519-14197538 None:intergenic 25.0%
!! TTAAGATACTGATTATGTCT+TGG + chr5.2:14197039-14197058 None:intergenic 25.0%
!!! CATCATCTTTGATTTTATGT+TGG + chr5.2:14196993-14197012 None:intergenic 25.0%
!!! GATCACATCTTTAAAACATA+TGG - chr5.2:14196243-14196262 MS.gene67577:intron 25.0%
AATACAACAGGACAATGAAT+TGG - chr5.2:14197635-14197654 MS.gene67577:CDS 30.0%
ACAAATCTTCAAGAAAGGAA+AGG + chr5.2:14195952-14195971 None:intergenic 30.0%
AGAAGGTTCAAATGTTTCAA+AGG - chr5.2:14196531-14196550 MS.gene67577:intron 30.0%
AGTGATTACAGTTATTAGAG+AGG - chr5.2:14196318-14196337 MS.gene67577:intron 30.0%
ATAATCAAATTGGTACTGCT+TGG + chr5.2:14197236-14197255 None:intergenic 30.0%
ATAGATCATTAGACAAGACA+AGG + chr5.2:14197366-14197385 None:intergenic 30.0%
ATGAATTGGAAATTGATCCT+TGG - chr5.2:14197649-14197668 MS.gene67577:CDS 30.0%
CAATATGTCATCAACACAAA+AGG - chr5.2:14195994-14196013 MS.gene67577:CDS 30.0%
CATTTGAACCTTCTCTTAAA+AGG + chr5.2:14196525-14196544 None:intergenic 30.0%
GCAGTTGAAATGATAGAAAA+TGG - chr5.2:14196586-14196605 MS.gene67577:intron 30.0%
TGCAAGCTCAAACAAAAAAT+TGG - chr5.2:14196962-14196981 MS.gene67577:CDS 30.0%
! GTGAAAATTTTGGATATCTG+CGG - chr5.2:14196070-14196089 MS.gene67577:intron 30.0%
! TTTTGCTTTCCTTTTCTCTT+GGG + chr5.2:14197096-14197115 None:intergenic 30.0%
! TTTTTGCTTTCCTTTTCTCT+TGG + chr5.2:14197097-14197116 None:intergenic 30.0%
!! CATCTTTGATTTTATGTTGG+TGG + chr5.2:14196990-14197009 None:intergenic 30.0%
!! CTTGGATAAGAAGCTTTAAA+AGG + chr5.2:14197202-14197221 None:intergenic 30.0%
!!! TTTTGCCACTTTAAACCAAT+TGG + chr5.2:14196419-14196438 None:intergenic 30.0%
AAAGTCAGCACTACAATTTC+TGG - chr5.2:14197531-14197550 MS.gene67577:CDS 35.0%
AAGAAATGAATTGGTACAGG+TGG + chr5.2:14197510-14197529 None:intergenic 35.0%
AATCTCATGTGAAGAGAAGT+TGG - chr5.2:14196456-14196475 MS.gene67577:intron 35.0%
ACATCTGATTCAATTACCAC+TGG - chr5.2:14195926-14195945 MS.gene67577:CDS 35.0%
AGTGGTAATTGAATCAGATG+TGG + chr5.2:14195927-14195946 None:intergenic 35.0%
GAAATTTGTGGAAGAGTTGT+TGG - chr5.2:14196039-14196058 MS.gene67577:CDS 35.0%
TAACTGTAATCACTGCAACA+AGG + chr5.2:14196312-14196331 None:intergenic 35.0%
TAGCTCTTGTTCTATTCTTG+TGG + chr5.2:14195870-14195889 None:intergenic 35.0%
TCAGTATCTTAAATCACGGA+AGG - chr5.2:14197047-14197066 MS.gene67577:CDS 35.0%
TCTATCTTAGAGATCTACTC+AGG - chr5.2:14196669-14196688 MS.gene67577:intron 35.0%
TGTTCTATTCTTGTGGAGTT+AGG + chr5.2:14195863-14195882 None:intergenic 35.0%
TTCATCTTGATTCAAAAGCG+AGG + chr5.2:14196287-14196306 None:intergenic 35.0%
TTGCAGATAATAATGCATCG+CGG - chr5.2:14197607-14197626 MS.gene67577:CDS 35.0%
! AAATTACAGGCATTGCATCT+TGG + chr5.2:14197448-14197467 None:intergenic 35.0%
! ATGGTTTGGAGAATGTATTC+AGG - chr5.2:14196605-14196624 MS.gene67577:intron 35.0%
! GCGTTGGTCAATAATCAAAT+TGG + chr5.2:14197246-14197265 None:intergenic 35.0%
! GGATGGTTCAGTGAAAATTT+TGG - chr5.2:14196060-14196079 MS.gene67577:CDS 35.0%
! TACTGATTATGTCTTGGTGT+TGG + chr5.2:14197033-14197052 None:intergenic 35.0%
! TGGTGTTGGAATTCATTTGT+TGG + chr5.2:14197019-14197038 None:intergenic 35.0%
!! GCGCATGATCTATTTTGTTT+TGG - chr5.2:14197276-14197295 MS.gene67577:CDS 35.0%
!! TTATCTTCTAAAAGCGTCCA+AGG + chr5.2:14197669-14197688 None:intergenic 35.0%
!! TTGAGAACCCTTTTAAGAGA+AGG - chr5.2:14196514-14196533 MS.gene67577:intron 35.0%
AAATGAATTGGTACAGGTGG+AGG + chr5.2:14197507-14197526 None:intergenic 40.0%
AACCAACCAAGAAAGACAGA+AGG + chr5.2:14196375-14196394 None:intergenic 40.0%
ACCAACCAAGAAAGACAGAA+GGG + chr5.2:14196374-14196393 None:intergenic 40.0%
AGCTATGCAAGATCAAGACA+TGG - chr5.2:14195885-14195904 MS.gene67577:CDS 40.0%
ATAGATCATGCGCGTATTAG+CGG + chr5.2:14197269-14197288 None:intergenic 40.0%
ATCAGATGTGGATGTTGATG+TGG + chr5.2:14195915-14195934 None:intergenic 40.0%
CAAAGTCAAAGGCAACCAAT+TGG - chr5.2:14196401-14196420 MS.gene67577:intron 40.0%
CCACAAATTTCTCACCTTGA+CGG + chr5.2:14196030-14196049 None:intergenic 40.0%
CTTGGACTGTATGCAACTTT+CGG - chr5.2:14197403-14197422 MS.gene67577:CDS 40.0%
GAAAACTGTTTGAGCGAACA+TGG + chr5.2:14195826-14195845 None:intergenic 40.0%
GAGTTAGGATGTGATTGAGA+AGG + chr5.2:14195848-14195867 None:intergenic 40.0%
GCTATGCAAGATCAAGACAT+GGG - chr5.2:14195886-14195905 MS.gene67577:CDS 40.0%
TAGACAAGACAAGGAAGAAC+TGG + chr5.2:14197357-14197376 None:intergenic 40.0%
TAGCAGCATTACTTGGAGAA+GGG + chr5.2:14197704-14197723 None:intergenic 40.0%
TCAATCCCTTCTGTCTTTCT+TGG - chr5.2:14196366-14196385 MS.gene67577:intron 40.0%
TTTGTGGAAGAGTTGTTGGA+TGG - chr5.2:14196043-14196062 MS.gene67577:CDS 40.0%
! ACGTGAAAGATTTGAGGCTT+TGG - chr5.2:14196558-14196577 MS.gene67577:intron 40.0%
! CGGTTTTTACCCAAGAGAAA+AGG - chr5.2:14197084-14197103 MS.gene67577:CDS 40.0%
! GGCAACCAATTGGTTTAAAG+TGG - chr5.2:14196411-14196430 MS.gene67577:intron 40.0%
! TGGTTCTGCATCAAAGTCAA+AGG - chr5.2:14196390-14196409 MS.gene67577:intron 40.0%
!! ACGCTTTTAGAAGATAACGC+TGG - chr5.2:14197672-14197691 MS.gene67577:CDS 40.0%
!! GAACTATAGTCGACTGGTTT+AGG + chr5.2:14197174-14197193 None:intergenic 40.0%
!! GGAAGGATGAGTATTGAGTT+CGG - chr5.2:14197064-14197083 MS.gene67577:CDS 40.0%
!! TGGCTTTAACTCCTGTTGTT+TGG - chr5.2:14197551-14197570 MS.gene67577:CDS 40.0%
AACTTTCGGACGCTATTTGG+TGG - chr5.2:14197417-14197436 MS.gene67577:CDS 45.0%
ACTGGTGTATGTGTGCCATA+GGG - chr5.2:14197308-14197327 MS.gene67577:CDS 45.0%
AGAAAGGGTAGCCAAACAAC+AGG + chr5.2:14197565-14197584 None:intergenic 45.0%
ATAACTTTCGAGCTGCGAGA+TGG - chr5.2:14197744-14197763 MS.gene67577:CDS 45.0%
ATAGAGCCGGATTCCTAGAA+AGG + chr5.2:14197581-14197600 None:intergenic 45.0%
ATCGCGGAAGTCAATACAAC+AGG - chr5.2:14197623-14197642 MS.gene67577:CDS 45.0%
CACTTCACTCTGCTCTTAGA+AGG - chr5.2:14196137-14196156 MS.gene67577:intron 45.0%
CCGTCAAGGTGAGAAATTTG+TGG - chr5.2:14196027-14196046 MS.gene67577:CDS 45.0%
CTAGCAGCATTACTTGGAGA+AGG + chr5.2:14197705-14197724 None:intergenic 45.0%
CTCTGCTCTTAGAAGGAGAA+AGG - chr5.2:14196144-14196163 MS.gene67577:intron 45.0%
GGAGAATGTATTCAGGCGTA+TGG - chr5.2:14196612-14196631 MS.gene67577:intron 45.0%
GGATATCTGCGGCATTACAA+GGG - chr5.2:14196081-14196100 MS.gene67577:intron 45.0%
GGATGCACGTGAAAGATTTG+AGG - chr5.2:14196552-14196571 MS.gene67577:intron 45.0%
GTTGCAGAACTATAGTCGAC+TGG + chr5.2:14197180-14197199 None:intergenic 45.0%
GTTGTTTGGCTACCCTTTCT+AGG - chr5.2:14197565-14197584 MS.gene67577:CDS 45.0%
TAATGCTGCTAGCAAGGAGA+TGG - chr5.2:14197713-14197732 MS.gene67577:CDS 45.0%
TACATTTCAGCAGTGCCCTA+TGG + chr5.2:14197326-14197345 None:intergenic 45.0%
TACTGGTGTATGTGTGCCAT+AGG - chr5.2:14197307-14197326 MS.gene67577:CDS 45.0%
TAGAGCCGGATTCCTAGAAA+GGG + chr5.2:14197580-14197599 None:intergenic 45.0%
TAGATCATGCGCGTATTAGC+GGG + chr5.2:14197268-14197287 None:intergenic 45.0%
TAGGAATCCGGCTCTATCAA+GGG - chr5.2:14197584-14197603 MS.gene67577:CDS 45.0%
TCCAAGTAATGCTGCTAGCA+AGG - chr5.2:14197707-14197726 MS.gene67577:CDS 45.0%
TCCCTTCTGTCTTTCTTGGT+TGG - chr5.2:14196370-14196389 MS.gene67577:intron 45.0%
TCCTTGCTAGCAGCATTACT+TGG + chr5.2:14197711-14197730 None:intergenic 45.0%
TCGCAGCTCGAAAGTTATCA+TGG + chr5.2:14197742-14197761 None:intergenic 45.0%
TGCAACTTTCGGACGCTATT+TGG - chr5.2:14197414-14197433 MS.gene67577:CDS 45.0%
TGCTTGGATGCATTGTGTCT+TGG + chr5.2:14197220-14197239 None:intergenic 45.0%
TGGATATCTGCGGCATTACA+AGG - chr5.2:14196080-14196099 MS.gene67577:intron 45.0%
TTCAAGAAAGGAAAGGCCAG+TGG + chr5.2:14195945-14195964 None:intergenic 45.0%
AGCTGCGAGATGGCTTAAAG+GGG - chr5.2:14197754-14197773 MS.gene67577:CDS 50.0%
CTAGGAATCCGGCTCTATCA+AGG - chr5.2:14197583-14197602 MS.gene67577:CDS 50.0%
GAGCTGCGAGATGGCTTAAA+GGG - chr5.2:14197753-14197772 MS.gene67577:CDS 50.0%
TCTGCAACCCTTGATAGAGC+CGG + chr5.2:14197594-14197613 None:intergenic 50.0%
! GGCTACCCTTTCTAGGAATC+CGG - chr5.2:14197572-14197591 MS.gene67577:CDS 50.0%
AAGGCCATTGCTCACCGTCA+AGG - chr5.2:14196013-14196032 MS.gene67577:CDS 55.0%
CGAGCTGCGAGATGGCTTAA+AGG - chr5.2:14197752-14197771 MS.gene67577:CDS 55.0%
CTCACCTTGACGGTGAGCAA+TGG + chr5.2:14196020-14196039 None:intergenic 55.0%
GTGGAGGCTGCAGGAGAAAG+AGG + chr5.2:14197491-14197510 None:intergenic 60.0%
TTGGTACAGGTGGAGGCTGC+AGG + chr5.2:14197500-14197519 None:intergenic 60.0%
! ATGCGCGTATTAGCGGGCGT+TGG + chr5.2:14197262-14197281 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 14195806 14197782 14195806 ID=MS.gene67577
chr5.2 mRNA 14195806 14197782 14195806 ID=MS.gene67577.t1;Parent=MS.gene67577
chr5.2 exon 14196943 14197782 14196943 ID=MS.gene67577.t1.exon1;Parent=MS.gene67577.t1
chr5.2 CDS 14196943 14197782 14196943 ID=cds.MS.gene67577.t1;Parent=MS.gene67577.t1
chr5.2 exon 14195806 14196084 14195806 ID=MS.gene67577.t1.exon2;Parent=MS.gene67577.t1
chr5.2 CDS 14195806 14196084 14195806 ID=cds.MS.gene67577.t1;Parent=MS.gene67577.t1
Gene Sequence

>MS.gene67577

ATGGGAAGCAACAACTACCATGTTCGCTCAAACAGTTTTCCTTCTCAATCACATCCTAACTCCACAAGAATAGAACAAGAGCTATGCAAGATCAAGACATGGGAAGCCACATCAACATCCACATCTGATTCAATTACCACTGGCCTTTCCTTTCTTGAAGATTTGTATATTTCTTTGGAAAATCTTCTCAATATGTCATCAACACAAAAGGCCATTGCTCACCGTCAAGGTGAGAAATTTGTGGAAGAGTTGTTGGATGGTTCAGTGAAAATTTTGGATATCTGCGGCATTACAAGGGACACCATGTCACAAATTAAAGAAAATGTTCAAACACTTCACTCTGCTCTTAGAAGGAGAAAGGCAGATTCAAGCATTGAAACAAGTGTAGCAGAATATAAATTCTTCACAAAGAAGATGAAGAAGAATGTCACAAAGTTGATCACATCTTTAAAACATATGGAAACTAAATTTGGAGTTTCCTCGCTTTTGAATCAAGATGAAGACCTTGTTGCAGTGATTACAGTTATTAGAGAGGTCATTGCAATGAACATGTCTATCTTTCAATCCCTTCTGTCTTTCTTGGTTGGTTCTGCATCAAAGTCAAAGGCAACCAATTGGTTTAAAGTGGCAAAATTGATGCATAAAACGACAATCTCATGTGAAGAGAAGTTGGAGAATTTCAATGAATTGCAGTTAGTTGATGCATCTTTGAGAACCCTTTTAAGAGAAGGTTCAAATGTTTCAAAGGATGCACGTGAAAGATTTGAGGCTTTGGAGAATGCAGTTGAAATGATAGAAAATGGTTTGGAGAATGTATTCAGGCGTATGGTTAAAACTAGAGTCAGTCTTTTGAACATTATGACTCTATCTTAGAGATCTACTCAGGATTGAAAAATTTTGCACAGTTAATTTGTATATAAATACTATGTATACAATTCAATAGAAATACAATCAAATAGAAACAACAAGTTTTTGCTCTATATTTCAGCTCTTTTATTTTTAATTTGAAGTTATAGATTATTGTATTATTTGCCTGAAAACTACAATAACTGATTTTTTTTGTAAACAAACAGAATCATCAATAAAAGTCGTAACTAAAACTTAAGTACTAGTTGTGTTCAATCACTTGTAGCAGAAAAAATAAGATAAAAAATGTTGCAAGCTCAAACAAAAAATTGGTTCCACCAACATAAAATCAAAGATGATGTAGCCAACAAATGAATTCCAACACCAAGACATAATCAGTATCTTAAATCACGGAAGGATGAGTATTGAGTTCGGTTTTTACCCAAGAGAAAAGGAAAGCAAAAAAACAGTATTAATGGCTCAAACGTGTCTATAAATCTACATCAGTAGCAGAAATTTCCTAAACCAGTCGACTATAGTTCTGCAACCTTTTAAAGCTTCTTATCCAAGACACAATGCATCCAAGCAGTACCAATTTGATTATTGACCAACGCCCGCTAATACGCGCATGATCTATTTTGTTTTGGTTTTTTTTTACTGGTGTATGTGTGCCATAGGGCACTGCTGAAATGTAGCAGTTCGCCAGTTCTTCCTTGTCTTGTCTAATGATCTATTTATTGATGCAAAATGACTTGGACTGTATGCAACTTTCGGACGCTATTTGGTGGCGTATCCAAGATGCAATGCCTGTAATTTTTGCATTGAATTTATGCGGTCCTCTTTCTCCTGCAGCCTCCACCTGTACCAATTCATTTCTTTAAAGTCAGCACTACAATTTCTGGCTTTAACTCCTGTTGTTTGGCTACCCTTTCTAGGAATCCGGCTCTATCAAGGGTTGCAGATAATAATGCATCGCGGAAGTCAATACAACAGGACAATGAATTGGAAATTGATCCTTGGACGCTTTTAGAAGATAACGCTGGATCTTTCCCTTCTCCAAGTAATGCTGCTAGCAAGGAGATGGTGACCATGATAACTTTCGAGCTGCGAGATGGCTTAAAGGGGCTGTAA
Protein sequence

>MS.gene67577.t1

MGSNNYHVRSNSFPSQSHPNSTRIEQELCKIKTWEATSTSTSDSITTGLSFLEDLYISLENLLNMSSTQKAIAHRQGEKFVEELLDGSVKILDICGITRDTMSQIKENVQTLHSALRRRKADSSIETSVAEYKFFTKKMKKNVTKLITSLKHMETKFGVSSLLNQDEDLVAVITVIREVIAMNMSIFQSLLSFLVGSASKSKATNWFKVAKLMHKTTISCEEKLENFNELQLVDASLRTLLREGSNVSKDARERFEALENAVEMIENGLENVFRRMVKTRPPPVPIHFFKVSTTISGFNSCCLATLSRNPALSRVADNNASRKSIQQDNELEIDPWTLLEDNAGSFPSPSNAASKEMVTMITFELRDGLKGL