Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67578.t1 | XP_024639655.1 | 85.3 | 211 | 28 | 1 | 1 | 211 | 65 | 272 | 3.90E-90 | 341.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67578.t1 | P27626 | 62.8 | 43 | 16 | 0 | 211 | 253 | 141 | 183 | 2.9e-09 | 63.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67578.t1 | G7JYU9 | 85.3 | 211 | 28 | 1 | 1 | 211 | 65 | 272 | 2.8e-90 | 341.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene67578 | 0.801082 | 1.06E-48 | -1.69E-46 |
| MS.gene049260 | MS.gene67578 | 0.81206 | 5.13E-51 | -1.69E-46 |
| MS.gene050128 | MS.gene67578 | 0.806166 | 9.39E-50 | -1.69E-46 |
| MS.gene053494 | MS.gene67578 | 0.82195 | 3.07E-53 | -1.69E-46 |
| MS.gene057754 | MS.gene67578 | 0.807109 | 5.94E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene67578 | 0.809301 | 2.02E-50 | -1.69E-46 |
| MS.gene059285 | MS.gene67578 | 0.821113 | 4.80E-53 | -1.69E-46 |
| MS.gene060495 | MS.gene67578 | 0.810419 | 1.16E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene67578 | 0.81257 | 3.97E-51 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67578.t1 | MTR_5g023600 | 87.678 | 211 | 23 | 1 | 1 | 211 | 65 | 272 | 1.95e-130 | 370 |
| MS.gene67578.t1 | MTR_5g023350 | 86.730 | 211 | 25 | 1 | 1 | 211 | 65 | 272 | 4.77e-130 | 369 |
| MS.gene67578.t1 | MTR_5g023340 | 85.308 | 211 | 28 | 1 | 1 | 211 | 65 | 272 | 2.83e-128 | 365 |
| MS.gene67578.t1 | MTR_5g023390 | 83.412 | 211 | 32 | 1 | 1 | 211 | 65 | 272 | 3.03e-126 | 360 |
| MS.gene67578.t1 | MTR_5g023370 | 83.412 | 211 | 32 | 1 | 1 | 211 | 65 | 272 | 3.27e-126 | 360 |
| MS.gene67578.t1 | MTR_5g023550 | 83.886 | 211 | 31 | 1 | 1 | 211 | 64 | 271 | 1.38e-125 | 358 |
| MS.gene67578.t1 | MTR_5g023520 | 83.962 | 212 | 30 | 2 | 1 | 211 | 64 | 272 | 2.85e-125 | 357 |
| MS.gene67578.t1 | MTR_5g023320 | 84.906 | 212 | 25 | 3 | 1 | 211 | 65 | 270 | 3.97e-124 | 354 |
| MS.gene67578.t1 | MTR_5g023530 | 83.019 | 212 | 32 | 2 | 1 | 211 | 65 | 273 | 5.55e-124 | 354 |
| MS.gene67578.t1 | MTR_5g023580 | 83.962 | 212 | 33 | 1 | 1 | 211 | 65 | 276 | 9.34e-123 | 353 |
| MS.gene67578.t1 | MTR_5g023470 | 82.075 | 212 | 34 | 2 | 1 | 211 | 65 | 273 | 2.19e-122 | 350 |
| MS.gene67578.t1 | MTR_8g074510 | 69.626 | 214 | 62 | 2 | 1 | 211 | 62 | 275 | 6.82e-99 | 290 |
| MS.gene67578.t1 | MTR_8g074420 | 69.159 | 214 | 63 | 2 | 1 | 211 | 64 | 277 | 1.06e-97 | 287 |
| MS.gene67578.t1 | MTR_5g023460 | 81.818 | 176 | 25 | 2 | 36 | 211 | 11 | 179 | 1.31e-97 | 283 |
| MS.gene67578.t1 | MTR_8g074450 | 70.093 | 214 | 61 | 2 | 1 | 211 | 64 | 277 | 2.95e-97 | 286 |
| MS.gene67578.t1 | MTR_8g074530 | 42.723 | 213 | 115 | 5 | 4 | 211 | 82 | 292 | 5.24e-40 | 140 |
| MS.gene67578.t1 | MTR_5g023290 | 36.937 | 222 | 129 | 4 | 1 | 211 | 75 | 296 | 3.01e-38 | 135 |
| MS.gene67578.t1 | MTR_8g074380 | 42.405 | 158 | 86 | 3 | 4 | 158 | 80 | 235 | 5.33e-31 | 117 |
| MS.gene67578.t1 | MTR_4g070530 | 33.333 | 216 | 136 | 3 | 1 | 211 | 71 | 283 | 2.13e-29 | 112 |
| MS.gene67578.t1 | MTR_3g116950 | 37.327 | 217 | 119 | 9 | 4 | 211 | 75 | 283 | 1.16e-28 | 110 |
| MS.gene67578.t1 | MTR_4g070570 | 31.963 | 219 | 135 | 7 | 4 | 211 | 75 | 290 | 2.74e-28 | 109 |
| MS.gene67578.t1 | MTR_5g023650 | 33.953 | 215 | 134 | 3 | 4 | 211 | 79 | 292 | 8.64e-28 | 108 |
| MS.gene67578.t1 | MTR_3g116920 | 34.703 | 219 | 126 | 8 | 4 | 211 | 73 | 285 | 7.33e-27 | 105 |
| MS.gene67578.t1 | MTR_4g070590 | 34.884 | 215 | 130 | 6 | 4 | 211 | 77 | 288 | 2.04e-25 | 102 |
| MS.gene67578.t1 | MTR_5g023170 | 80.000 | 55 | 6 | 1 | 204 | 253 | 131 | 185 | 1.50e-23 | 94.4 |
| MS.gene67578.t1 | MTR_4g070540 | 31.776 | 214 | 142 | 4 | 1 | 211 | 71 | 283 | 3.65e-22 | 93.2 |
| MS.gene67578.t1 | MTR_1g037820 | 28.636 | 220 | 118 | 6 | 2 | 211 | 23 | 213 | 4.33e-18 | 80.9 |
| MS.gene67578.t1 | MTR_5g023410 | 91.892 | 37 | 3 | 0 | 1 | 37 | 64 | 100 | 3.06e-17 | 78.2 |
| MS.gene67578.t1 | MTR_5g023540 | 55.224 | 67 | 27 | 1 | 99 | 165 | 1 | 64 | 3.78e-16 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67578.t1 | AT4G35690 | 34.101 | 217 | 126 | 5 | 1 | 211 | 66 | 271 | 2.82e-32 | 119 |
| MS.gene67578.t1 | AT2G17080 | 34.450 | 209 | 111 | 6 | 4 | 211 | 67 | 250 | 6.70e-26 | 102 |
| MS.gene67578.t1 | AT2G17070 | 34.906 | 212 | 112 | 6 | 1 | 211 | 64 | 250 | 1.61e-25 | 101 |
| MS.gene67578.t1 | AT2G17680 | 35.242 | 227 | 116 | 10 | 1 | 211 | 68 | 279 | 4.35e-25 | 100 |
| MS.gene67578.t1 | AT4G35200 | 33.962 | 212 | 110 | 6 | 1 | 211 | 61 | 243 | 4.37e-24 | 97.4 |
| MS.gene67578.t1 | AT4G35710 | 32.877 | 219 | 125 | 6 | 1 | 211 | 66 | 270 | 3.83e-21 | 90.1 |
| MS.gene67578.t1 | AT4G35210 | 31.132 | 212 | 113 | 7 | 1 | 211 | 61 | 240 | 3.53e-19 | 84.3 |
| MS.gene67578.t1 | AT4G35680 | 41.803 | 122 | 64 | 3 | 10 | 130 | 91 | 206 | 5.82e-17 | 79.0 |
| MS.gene67578.t1 | AT4G35660 | 37.121 | 132 | 75 | 3 | 5 | 130 | 78 | 207 | 3.49e-14 | 70.9 |
| MS.gene67578.t1 | AT4G35720 | 33.333 | 159 | 93 | 4 | 2 | 151 | 76 | 230 | 2.18e-13 | 68.9 |
| MS.gene67578.t1 | AT4G35770 | 54.545 | 55 | 20 | 1 | 204 | 253 | 128 | 182 | 4.56e-13 | 66.2 |
| MS.gene67578.t1 | AT5G66040 | 64.286 | 42 | 15 | 0 | 211 | 252 | 78 | 119 | 5.08e-13 | 64.3 |
| MS.gene67578.t1 | AT5G66040 | 64.286 | 42 | 15 | 0 | 211 | 252 | 23 | 64 | 5.88e-13 | 62.8 |
| MS.gene67578.t1 | AT1G76210 | 30.714 | 140 | 90 | 4 | 2 | 136 | 24 | 161 | 8.50e-12 | 63.5 |
Find 44 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTGAACCTTCCCTTAAA+AGG | 0.143471 | 5.2:+14203705 | None:intergenic |
| AAACATATGGAAACTAAATT+TGG | 0.157953 | 5.2:-14203968 | MS.gene67578:CDS |
| GCAATTGAAATGATAGAAAA+TGG | 0.225171 | 5.2:-14203641 | MS.gene67578:CDS |
| GGATGGTTCAGTCAGAATTT+TGG | 0.244047 | 5.2:-14204164 | MS.gene67578:CDS |
| CCACAAATTTCTCACCTTGA+TGG | 0.264918 | 5.2:+14204197 | None:intergenic |
| CTCTGACAATTTCAATGAAT+TGG | 0.272748 | 5.2:-14203753 | MS.gene67578:CDS |
| CTTTGTGAAGAATTTATATT+CGG | 0.312307 | 5.2:+14204030 | None:intergenic |
| TCCAACCAAGAAAGACAAAA+TGG | 0.347485 | 5.2:+14203853 | None:intergenic |
| TATGCTGCTTGGACTCAAAA+TGG | 0.348576 | 5.2:-14202599 | MS.gene67578:CDS |
| GGAGAGTTTATTTAGGAGAT+TGG | 0.352571 | 5.2:-14203615 | MS.gene67578:intron |
| ACATGAAAGATTTGAGAGTT+TGG | 0.364272 | 5.2:-14203669 | MS.gene67578:CDS |
| GAAATTTGTGGAAGAGTTGT+TGG | 0.365610 | 5.2:-14204185 | MS.gene67578:CDS |
| GATCACATCTTTAAAACATA+TGG | 0.374642 | 5.2:-14203981 | MS.gene67578:CDS |
| ATGGTTTGGAGAGTTTATTT+AGG | 0.391038 | 5.2:-14203622 | MS.gene67578:CDS |
| CCCTTCACTCTGCTCTTAGA+AGG | 0.394926 | 5.2:-14204087 | MS.gene67578:CDS |
| TGAAATGATAGAAAATGGTT+TGG | 0.414105 | 5.2:-14203636 | MS.gene67578:CDS |
| TAGCTGGTGGTTATGCTGCT+TGG | 0.436274 | 5.2:-14202610 | MS.gene67578:CDS |
| ACCAGCTATGTCTGTGAGTC+CGG | 0.440393 | 5.2:+14202625 | None:intergenic |
| ATTTGAACCTTCCCTTAAAA+GGG | 0.441136 | 5.2:+14203706 | None:intergenic |
| CCATCAAGGTGAGAAATTTG+TGG | 0.460090 | 5.2:-14204197 | MS.gene67578:CDS |
| CTCTGCTCTTAGAAGGAGAA+AGG | 0.467785 | 5.2:-14204080 | MS.gene67578:CDS |
| CAATATGTCATCAACACAAA+AGG | 0.475655 | 5.2:-14204230 | None:intergenic |
| TGACAAAATTGATGCAAAAG+AGG | 0.490023 | 5.2:-14203793 | MS.gene67578:CDS |
| TGCATTGTATAGGGGTTCAC+CGG | 0.511879 | 5.2:-14202644 | MS.gene67578:intron |
| ATTGTCAGAGTTCTCTTCAC+AGG | 0.513347 | 5.2:+14203766 | None:intergenic |
| AGGGTTGTCAGCTTGGGAAA+AGG | 0.515357 | 5.2:-14203049 | MS.gene67578:CDS |
| TCCTTCTAAGAGCAGAGTGA+AGG | 0.531554 | 5.2:+14204086 | None:intergenic |
| TGGATATCTGTGGCATCACA+AGG | 0.539961 | 5.2:-14204144 | MS.gene67578:CDS |
| GGAAGGTTCAAATATTTCAA+AGG | 0.540457 | 5.2:-14203696 | MS.gene67578:CDS |
| GACAAAATTGATGCAAAAGA+GGG | 0.552355 | 5.2:-14203792 | MS.gene67578:CDS |
| GCTTGGGAAAAGGTCTATGA+TGG | 0.555495 | 5.2:-14203039 | MS.gene67578:CDS |
| CAAAGTCAAAGGCAACCAAA+TGG | 0.562903 | 5.2:-14203823 | MS.gene67578:CDS |
| TCTGCTCTTAGAAGGAGAAA+GGG | 0.566127 | 5.2:-14204079 | MS.gene67578:CDS |
| ACCGGACTCACAGACATAGC+TGG | 0.570324 | 5.2:-14202626 | MS.gene67578:CDS |
| CCTTCTAAGAGCAGAGTGAA+GGG | 0.572703 | 5.2:+14204087 | None:intergenic |
| TTTCAATGAATTGGAGTGTG+TGG | 0.576990 | 5.2:-14203744 | MS.gene67578:CDS |
| TGGATCTTCATCAAAGTCAA+AGG | 0.588491 | 5.2:-14203834 | MS.gene67578:CDS |
| AAGGCTATTTCTCACCATCA+AGG | 0.605742 | 5.2:-14204211 | MS.gene67578:CDS |
| TTGATCTTGATTCAAAAGTG+AGG | 0.609457 | 5.2:+14203940 | None:intergenic |
| TTTGTGGAAGAGTTGTTGGA+TGG | 0.615570 | 5.2:-14204181 | MS.gene67578:CDS |
| AGTGATTACAGTTCTTAGAG+TGG | 0.616697 | 5.2:-14203906 | MS.gene67578:CDS |
| GGATATCTGTGGCATCACAA+GGG | 0.651501 | 5.2:-14204143 | MS.gene67578:CDS |
| GAACTGTAATCACTGCAACA+AGG | 0.656672 | 5.2:+14203915 | None:intergenic |
| GGACTCACAGACATAGCTGG+TGG | 0.717723 | 5.2:-14202623 | MS.gene67578:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCTTTAATTTGTAAGA+TGG | + | chr5.2:14202692-14202711 | None:intergenic | 15.0% |
| !! | AAACATATGGAAACTAAATT+TGG | - | chr5.2:14202838-14202857 | MS.gene67578:intron | 20.0% |
| !! | AAGGTGTAACTAAAAATTAA+GGG | - | chr5.2:14203495-14203514 | MS.gene67578:intron | 20.0% |
| !! | AATCAAGACAAAGTAAAAAT+AGG | - | chr5.2:14203588-14203607 | MS.gene67578:intron | 20.0% |
| !! | AGTAAAAATAGGTTTAGTAA+AGG | - | chr5.2:14203599-14203618 | MS.gene67578:intron | 20.0% |
| !! | CTTTGTGAAGAATTTATATT+CGG | + | chr5.2:14202779-14202798 | None:intergenic | 20.0% |
| !! | GAGTAAAAACATTCATTAAT+TGG | - | chr5.2:14203690-14203709 | MS.gene67578:CDS | 20.0% |
| !! | TAATTGTGTATATCATAGTA+TGG | + | chr5.2:14203639-14203658 | None:intergenic | 20.0% |
| !!! | AAAGGTGTAACTAAAAATTA+AGG | - | chr5.2:14203494-14203513 | MS.gene67578:intron | 20.0% |
| !!! | ATGTTACAATTTTTCTCTTA+AGG | - | chr5.2:14203395-14203414 | MS.gene67578:intron | 20.0% |
| !!! | ATTAAACTGTGCAAAATTTT+TGG | + | chr5.2:14203276-14203295 | None:intergenic | 20.0% |
| !!! | ATTTTTAGTTACACCTTTTA+TGG | + | chr5.2:14203492-14203511 | None:intergenic | 20.0% |
| !!! | CAAACAAATTGTAGTTTTTT+AGG | + | chr5.2:14203450-14203469 | None:intergenic | 20.0% |
| !!! | TTAACTTCTTGAAAATTTTG+AGG | - | chr5.2:14204112-14204131 | MS.gene67578:CDS | 20.0% |
| !!! | TTATTTTTGTTTACACTTTC+AGG | + | chr5.2:14204020-14204039 | None:intergenic | 20.0% |
| !!! | TTTTACTTTGTCTTGATTTT+AGG | + | chr5.2:14203586-14203605 | None:intergenic | 20.0% |
| !!! | TTTTCATCAATAATTAGTCT+TGG | - | chr5.2:14204052-14204071 | MS.gene67578:CDS | 20.0% |
| ! | AAGAAAAAATTAGGAGATCA+AGG | - | chr5.2:14203668-14203687 | MS.gene67578:CDS | 25.0% |
| ! | ACAATCAAATAGAAACAACA+AGG | - | chr5.2:14203335-14203354 | MS.gene67578:intron | 25.0% |
| ! | GCAATTGAAATGATAGAAAA+TGG | - | chr5.2:14203165-14203184 | MS.gene67578:intron | 25.0% |
| ! | GTCATTCGAAAGAAAAAATT+AGG | - | chr5.2:14203659-14203678 | MS.gene67578:CDS | 25.0% |
| ! | TATTGATGAAAAAAGTAGCA+CGG | + | chr5.2:14204044-14204063 | None:intergenic | 25.0% |
| ! | TGAAATGATAGAAAATGGTT+TGG | - | chr5.2:14203170-14203189 | MS.gene67578:intron | 25.0% |
| !! | CAATTTGTTTGATAAGCAAA+CGG | - | chr5.2:14203459-14203478 | MS.gene67578:intron | 25.0% |
| !! | GTTAATAAAGTATCTATCAC+TGG | + | chr5.2:14204097-14204116 | None:intergenic | 25.0% |
| !!! | AATTGTTTTGCATTGTATAG+GGG | - | chr5.2:14204154-14204173 | MS.gene67578:CDS | 25.0% |
| !!! | ACAATTGTTTTGCATTGTAT+AGG | - | chr5.2:14204152-14204171 | MS.gene67578:CDS | 25.0% |
| !!! | CAATTGTTTTGCATTGTATA+GGG | - | chr5.2:14204153-14204172 | MS.gene67578:CDS | 25.0% |
| !!! | GATCACATCTTTAAAACATA+TGG | - | chr5.2:14202825-14202844 | MS.gene67578:intron | 25.0% |
| !!! | TTAATGTTCTTGTTTTTGCA+GGG | - | chr5.2:14203738-14203757 | MS.gene67578:CDS | 25.0% |
| !!! | TTGTCTTGATTTTAGGTTTT+AGG | + | chr5.2:14203579-14203598 | None:intergenic | 25.0% |
| AAACGGAATTCATCCATAAA+AGG | - | chr5.2:14203476-14203495 | MS.gene67578:intron | 30.0% | |
| AAACTCAAACAAGAAGTGAA+AGG | + | chr5.2:14203959-14203978 | None:intergenic | 30.0% | |
| AACATCATCACACTAACATA+GGG | - | chr5.2:14203237-14203256 | MS.gene67578:intron | 30.0% | |
| AACTCAAACAAGAAGTGAAA+GGG | + | chr5.2:14203958-14203977 | None:intergenic | 30.0% | |
| AAGTATCTATCACTGGAAAT+TGG | + | chr5.2:14204090-14204109 | None:intergenic | 30.0% | |
| ACATGAAAGATTTGAGAGTT+TGG | - | chr5.2:14203137-14203156 | MS.gene67578:intron | 30.0% | |
| ATTTGAACCTTCCCTTAAAA+GGG | + | chr5.2:14203103-14203122 | None:intergenic | 30.0% | |
| CTCTGACAATTTCAATGAAT+TGG | - | chr5.2:14203053-14203072 | MS.gene67578:intron | 30.0% | |
| GACAAAATTGATGCAAAAGA+GGG | - | chr5.2:14203014-14203033 | MS.gene67578:intron | 30.0% | |
| GGAAGGTTCAAATATTTCAA+AGG | - | chr5.2:14203110-14203129 | MS.gene67578:intron | 30.0% | |
| TATTTGAACCTTCCCTTAAA+AGG | + | chr5.2:14203104-14203123 | None:intergenic | 30.0% | |
| TGACAAAATTGATGCAAAAG+AGG | - | chr5.2:14203013-14203032 | MS.gene67578:intron | 30.0% | |
| TTGATCTTGATTCAAAAGTG+AGG | + | chr5.2:14202869-14202888 | None:intergenic | 30.0% | |
| ! | ATGGTTTGGAGAGTTTATTT+AGG | - | chr5.2:14203184-14203203 | MS.gene67578:intron | 30.0% |
| ! | TCAATCCATTTTGTCTTTCT+TGG | - | chr5.2:14202948-14202967 | MS.gene67578:intron | 30.0% |
| !! | ATCTTTGAGAACCCTTTTAA+GGG | - | chr5.2:14203089-14203108 | MS.gene67578:intron | 30.0% |
| !! | TTTAGTAAAGGCACTAGAAA+TGG | - | chr5.2:14203611-14203630 | MS.gene67578:intron | 30.0% |
| !!! | GTTAATGTTCTTGTTTTTGC+AGG | - | chr5.2:14203737-14203756 | MS.gene67578:CDS | 30.0% |
| !!! | TTTTGTCACTTTCAACCATT+TGG | + | chr5.2:14203001-14203020 | None:intergenic | 30.0% |
| ACTCAAACAAGAAGTGAAAG+GGG | + | chr5.2:14203957-14203976 | None:intergenic | 35.0% | |
| AGTGATTACAGTTCTTAGAG+TGG | - | chr5.2:14202900-14202919 | MS.gene67578:intron | 35.0% | |
| GAAATTTGTGGAAGAGTTGT+TGG | - | chr5.2:14202621-14202640 | MS.gene67578:CDS | 35.0% | |
| GAACATCATCACACTAACAT+AGG | - | chr5.2:14203236-14203255 | MS.gene67578:intron | 35.0% | |
| GATGTTCAATAGATGAACTC+TGG | + | chr5.2:14203223-14203242 | None:intergenic | 35.0% | |
| GGAGAGTTTATTTAGGAGAT+TGG | - | chr5.2:14203191-14203210 | MS.gene67578:intron | 35.0% | |
| TAGCACTCAACTAAAATGCT+AGG | + | chr5.2:14203985-14204004 | None:intergenic | 35.0% | |
| TCCAACCAAGAAAGACAAAA+TGG | + | chr5.2:14202956-14202975 | None:intergenic | 35.0% | |
| TGGATCTTCATCAAAGTCAA+AGG | - | chr5.2:14202972-14202991 | MS.gene67578:intron | 35.0% | |
| TTTCAATGAATTGGAGTGTG+TGG | - | chr5.2:14203062-14203081 | MS.gene67578:intron | 35.0% | |
| ! | ACTAACATAGGGATCTTTTG+AGG | - | chr5.2:14203248-14203267 | MS.gene67578:intron | 35.0% |
| ! | GTCAGAATTTTGGATATCTG+TGG | - | chr5.2:14202652-14202671 | MS.gene67578:intron | 35.0% |
| ! | TCCATTTTGTCTTTCTTGGT+TGG | - | chr5.2:14202952-14202971 | MS.gene67578:intron | 35.0% |
| !! | CATCTTTGAGAACCCTTTTA+AGG | - | chr5.2:14203088-14203107 | MS.gene67578:intron | 35.0% |
| !!! | TAGCATTTTAGTTGAGTGCT+AGG | - | chr5.2:14203984-14204003 | MS.gene67578:CDS | 35.0% |
| !!! | TTTTGAGGTCAAAGCTTGTT+TGG | - | chr5.2:14204127-14204146 | MS.gene67578:CDS | 35.0% |
| ATTGTCAGAGTTCTCTTCAC+AGG | + | chr5.2:14203043-14203062 | None:intergenic | 40.0% | |
| CAAAGTCAAAGGCAACCAAA+TGG | - | chr5.2:14202983-14203002 | MS.gene67578:intron | 40.0% | |
| CCACAAATTTCTCACCTTGA+TGG | + | chr5.2:14202612-14202631 | None:intergenic | 40.0% | |
| CCATCAAGGTGAGAAATTTG+TGG | - | chr5.2:14202609-14202628 | MS.gene67578:CDS | 40.0% | |
| CTCAAACAAGAAGTGAAAGG+GGG | + | chr5.2:14203956-14203975 | None:intergenic | 40.0% | |
| GAACTGTAATCACTGCAACA+AGG | + | chr5.2:14202894-14202913 | None:intergenic | 40.0% | |
| TCTGCTCTTAGAAGGAGAAA+GGG | - | chr5.2:14202727-14202746 | MS.gene67578:intron | 40.0% | |
| TTTGTGGAAGAGTTGTTGGA+TGG | - | chr5.2:14202625-14202644 | MS.gene67578:CDS | 40.0% | |
| ! | GGATGGTTCAGTCAGAATTT+TGG | - | chr5.2:14202642-14202661 | MS.gene67578:intron | 40.0% |
| ! | TATGCTGCTTGGACTCAAAA+TGG | - | chr5.2:14204207-14204226 | MS.gene67578:CDS | 40.0% |
| !! | AAGGCTATTTCTCACCATCA+AGG | - | chr5.2:14202595-14202614 | MS.gene67578:CDS | 40.0% |
| !! | TTGAGAACCCTTTTAAGGGA+AGG | - | chr5.2:14203093-14203112 | MS.gene67578:intron | 40.0% |
| CTCTGCTCTTAGAAGGAGAA+AGG | - | chr5.2:14202726-14202745 | MS.gene67578:intron | 45.0% | |
| GCTTGGGAAAAGGTCTATGA+TGG | - | chr5.2:14203767-14203786 | MS.gene67578:CDS | 45.0% | |
| GGATATCTGTGGCATCACAA+GGG | - | chr5.2:14202663-14202682 | MS.gene67578:intron | 45.0% | |
| TGCATTGTATAGGGGTTCAC+CGG | - | chr5.2:14204162-14204181 | MS.gene67578:CDS | 45.0% | |
| TGGATATCTGTGGCATCACA+AGG | - | chr5.2:14202662-14202681 | MS.gene67578:intron | 45.0% | |
| ! | CCTTCTAAGAGCAGAGTGAA+GGG | + | chr5.2:14202722-14202741 | None:intergenic | 45.0% |
| ! | TCCTTCTAAGAGCAGAGTGA+AGG | + | chr5.2:14202723-14202742 | None:intergenic | 45.0% |
| ! | TTTTGCAGGGTTGTCAGCTT+GGG | - | chr5.2:14203751-14203770 | MS.gene67578:CDS | 45.0% |
| ! | TTTTTGCAGGGTTGTCAGCT+TGG | - | chr5.2:14203750-14203769 | MS.gene67578:CDS | 45.0% |
| ACCAGCTATGTCTGTGAGTC+CGG | + | chr5.2:14204184-14204203 | None:intergenic | 50.0% | |
| AGGGTTGTCAGCTTGGGAAA+AGG | - | chr5.2:14203757-14203776 | MS.gene67578:CDS | 50.0% | |
| CCCTTCACTCTGCTCTTAGA+AGG | - | chr5.2:14202719-14202738 | MS.gene67578:intron | 50.0% | |
| TAGCTGGTGGTTATGCTGCT+TGG | - | chr5.2:14204196-14204215 | MS.gene67578:CDS | 50.0% | |
| ACCGGACTCACAGACATAGC+TGG | - | chr5.2:14204180-14204199 | MS.gene67578:CDS | 55.0% | |
| GGACTCACAGACATAGCTGG+TGG | - | chr5.2:14204183-14204202 | MS.gene67578:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 14202580 | 14204248 | 14202580 | ID=MS.gene67578 |
| chr5.2 | mRNA | 14202580 | 14204248 | 14202580 | ID=MS.gene67578.t1;Parent=MS.gene67578 |
| chr5.2 | exon | 14203616 | 14204248 | 14203616 | ID=MS.gene67578.t1.exon1;Parent=MS.gene67578.t1 |
| chr5.2 | CDS | 14203616 | 14204248 | 14203616 | ID=cds.MS.gene67578.t1;Parent=MS.gene67578.t1 |
| chr5.2 | exon | 14203016 | 14203069 | 14203016 | ID=MS.gene67578.t1.exon2;Parent=MS.gene67578.t1 |
| chr5.2 | CDS | 14203016 | 14203069 | 14203016 | ID=cds.MS.gene67578.t1;Parent=MS.gene67578.t1 |
| chr5.2 | exon | 14202580 | 14202654 | 14202580 | ID=MS.gene67578.t1.exon3;Parent=MS.gene67578.t1 |
| chr5.2 | CDS | 14202580 | 14202654 | 14202580 | ID=cds.MS.gene67578.t1;Parent=MS.gene67578.t1 |
| Gene Sequence |
| Protein sequence |
