Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66186.t1 | PNY00219.1 | 99.5 | 203 | 1 | 0 | 1 | 203 | 17 | 219 | 2.60E-110 | 408.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66186.t1 | Q8GY23 | 79.7 | 202 | 41 | 0 | 2 | 203 | 3464 | 3665 | 2.3e-91 | 336.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66186.t1 | A0A2K3NB06 | 99.5 | 203 | 1 | 0 | 1 | 203 | 17 | 219 | 1.9e-110 | 408.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene66186 | 0.81339 | 2.62E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene66186 | 0.808257 | 3.38E-50 | -1.69E-46 |
| MS.gene050156 | MS.gene66186 | 0.841446 | 4.73E-58 | -1.69E-46 |
| MS.gene050355 | MS.gene66186 | 0.801147 | 1.03E-48 | -1.69E-46 |
| MS.gene050844 | MS.gene66186 | 0.82263 | 2.14E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene66186 | 0.845522 | 3.85E-59 | -1.69E-46 |
| MS.gene052773 | MS.gene66186 | 0.838747 | 2.39E-57 | -1.69E-46 |
| MS.gene052863 | MS.gene66186 | 0.829019 | 6.50E-55 | -1.69E-46 |
| MS.gene053145 | MS.gene66186 | 0.80753 | 4.83E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene66186 | 0.811385 | 7.19E-51 | -1.69E-46 |
| MS.gene054582 | MS.gene66186 | 0.801967 | 7.01E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene66186 | 0.813047 | 3.12E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene66186 | 0.841231 | 5.39E-58 | -1.69E-46 |
| MS.gene056595 | MS.gene66186 | 0.807628 | 4.61E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene66186 | 0.806095 | 9.72E-50 | -1.69E-46 |
| MS.gene058009 | MS.gene66186 | 0.802058 | 6.72E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene66186 | 0.810277 | 1.25E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene66186 | 0.831887 | 1.29E-55 | -1.69E-46 |
| MS.gene060572 | MS.gene66186 | 0.801005 | 1.10E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66186.t1 | MTR_3g099777 | 99.505 | 202 | 1 | 0 | 2 | 203 | 3466 | 3667 | 6.13e-135 | 420 |
| MS.gene66186.t1 | MTR_5g066710 | 96.535 | 202 | 7 | 0 | 2 | 203 | 3438 | 3639 | 2.79e-131 | 409 |
| MS.gene66186.t1 | MTR_4g094705 | 80.693 | 202 | 39 | 0 | 2 | 203 | 3520 | 3721 | 2.03e-111 | 352 |
| MS.gene66186.t1 | MTR_4g094708 | 80.693 | 202 | 39 | 0 | 2 | 203 | 3541 | 3742 | 2.49e-111 | 352 |
| MS.gene66186.t1 | MTR_2g033040 | 46.040 | 202 | 99 | 4 | 3 | 202 | 815 | 1008 | 1.17e-45 | 163 |
| MS.gene66186.t1 | MTR_4g133120 | 36.683 | 199 | 108 | 5 | 5 | 197 | 672 | 858 | 1.49e-33 | 128 |
| MS.gene66186.t1 | MTR_7g103210 | 38.424 | 203 | 102 | 7 | 6 | 195 | 933 | 1125 | 5.23e-32 | 124 |
| MS.gene66186.t1 | MTR_2g025810 | 36.041 | 197 | 110 | 5 | 5 | 197 | 608 | 792 | 7.45e-31 | 120 |
| MS.gene66186.t1 | MTR_2g025950 | 35.533 | 197 | 111 | 5 | 5 | 197 | 570 | 754 | 1.98e-30 | 119 |
| MS.gene66186.t1 | MTR_2g025790 | 36.041 | 197 | 110 | 5 | 5 | 197 | 619 | 803 | 6.04e-30 | 118 |
| MS.gene66186.t1 | MTR_2g025830 | 35.533 | 197 | 111 | 4 | 5 | 197 | 613 | 797 | 2.37e-29 | 116 |
| MS.gene66186.t1 | MTR_7g103210 | 38.462 | 169 | 92 | 5 | 6 | 172 | 933 | 1091 | 1.36e-26 | 108 |
| MS.gene66186.t1 | MTR_1g066940 | 32.955 | 176 | 112 | 4 | 31 | 203 | 1361 | 1533 | 4.99e-21 | 92.4 |
| MS.gene66186.t1 | MTR_1g066940 | 33.333 | 180 | 114 | 4 | 31 | 207 | 1361 | 1537 | 2.80e-20 | 90.1 |
| MS.gene66186.t1 | MTR_1g066940 | 32.824 | 131 | 86 | 2 | 31 | 159 | 1361 | 1491 | 5.39e-15 | 74.7 |
| MS.gene66186.t1 | MTR_4g073370 | 30.220 | 182 | 112 | 5 | 31 | 199 | 1682 | 1861 | 5.48e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66186.t1 | AT1G55860 | 79.703 | 202 | 41 | 0 | 2 | 203 | 3464 | 3665 | 1.05e-109 | 347 |
| MS.gene66186.t1 | AT1G70320 | 78.713 | 202 | 43 | 0 | 2 | 203 | 3441 | 3642 | 5.57e-109 | 345 |
| MS.gene66186.t1 | AT3G17205 | 47.343 | 207 | 89 | 7 | 3 | 202 | 806 | 999 | 7.10e-45 | 161 |
| MS.gene66186.t1 | AT3G17205 | 47.343 | 207 | 89 | 7 | 3 | 202 | 820 | 1013 | 8.41e-45 | 161 |
| MS.gene66186.t1 | AT3G17205 | 47.343 | 207 | 89 | 7 | 3 | 202 | 820 | 1013 | 8.41e-45 | 161 |
| MS.gene66186.t1 | AT3G53090 | 43.478 | 184 | 86 | 5 | 33 | 203 | 949 | 1127 | 1.44e-36 | 137 |
| MS.gene66186.t1 | AT3G53090 | 43.478 | 184 | 86 | 5 | 33 | 203 | 949 | 1127 | 1.44e-36 | 137 |
| MS.gene66186.t1 | AT4G12570 | 33.981 | 206 | 118 | 5 | 8 | 207 | 667 | 860 | 5.46e-30 | 118 |
| MS.gene66186.t1 | AT5G02880 | 30.000 | 200 | 130 | 4 | 9 | 203 | 1292 | 1486 | 4.66e-25 | 104 |
| MS.gene66186.t1 | AT5G02880 | 30.256 | 195 | 126 | 4 | 9 | 198 | 1292 | 1481 | 5.49e-24 | 101 |
| MS.gene66186.t1 | AT4G38600 | 27.647 | 170 | 101 | 4 | 47 | 199 | 1704 | 1868 | 5.73e-13 | 68.9 |
| MS.gene66186.t1 | AT4G38600 | 27.647 | 170 | 101 | 4 | 47 | 199 | 1704 | 1868 | 5.73e-13 | 68.9 |
Find 60 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCGGTGATTCAATGGTTT+TGG | 0.141517 | 3.3:-46230771 | MS.gene66186:CDS |
| ACCTCAAATAAATGCTTTCT+TGG | 0.242468 | 3.3:-46231123 | MS.gene66186:CDS |
| AGCGCACTTCAAGGAATTTC+AGG | 0.248103 | 3.3:-46230254 | MS.gene66186:CDS |
| TCTTCCAAATGTTGTTTAGA+TGG | 0.271330 | 3.3:+46230004 | None:intergenic |
| TAAGCATCAATATGTTGATT+TGG | 0.313697 | 3.3:-46231177 | MS.gene66186:CDS |
| AGAGCAAATACAGAATATTC+TGG | 0.327907 | 3.3:-46230808 | MS.gene66186:CDS |
| AACAAACTTACAATCAATAT+CGG | 0.331367 | 3.3:+46231019 | None:intergenic |
| TTTCAATCAATTAGATTTGC+CGG | 0.333489 | 3.3:-46230032 | MS.gene66186:CDS |
| GGCAGATTGCGACTGTTAGA+AGG | 0.357330 | 3.3:+46229497 | None:intergenic |
| CTGCTTCCCCGGTGATTCAA+TGG | 0.371026 | 3.3:-46230777 | MS.gene66186:CDS |
| GAATGATATCAGTGATGTTC+TGG | 0.379619 | 3.3:-46231437 | MS.gene66186:CDS |
| GCCACTCCAACTGCCGCAAC+AGG | 0.395144 | 3.3:+46229603 | None:intergenic |
| CAAATAAATGCTTTCTTGGA+AGG | 0.404199 | 3.3:-46231119 | MS.gene66186:CDS |
| CCACAACAGTCACAGATGTT+GGG | 0.415053 | 3.3:+46229546 | None:intergenic |
| ACTGATTATGAGTTGATTCC+CGG | 0.416823 | 3.3:-46231230 | MS.gene66186:CDS |
| TCCAAGAAAGCATTTATTTG+AGG | 0.420992 | 3.3:+46231122 | None:intergenic |
| TTTCAAATACACAAGGCATA+TGG | 0.424134 | 3.3:-46230221 | MS.gene66186:CDS |
| GCAGCACCTGTTGCGGCAGT+TGG | 0.430535 | 3.3:-46229609 | MS.gene66186:CDS |
| GTATCCATCTAAACAACATT+TGG | 0.432935 | 3.3:-46230008 | MS.gene66186:CDS |
| AATGCTTTCTTGGAAGGGTT+CGG | 0.435126 | 3.3:-46231113 | MS.gene66186:CDS |
| TATATTCAATGACAAAGAAC+TGG | 0.439692 | 3.3:-46231063 | MS.gene66186:CDS |
| AGGCTGTTGCAGTTTGTGAC+AGG | 0.452963 | 3.3:-46230712 | MS.gene66186:CDS |
| AATATAGATATCAACTCCTT+CGG | 0.481461 | 3.3:+46231080 | None:intergenic |
| TGGATATAGTGCTGCTTCCC+CGG | 0.486416 | 3.3:-46230788 | MS.gene66186:CDS |
| TCCCAAAACCATTGAATCAC+CGG | 0.489543 | 3.3:+46230769 | None:intergenic |
| AACTTTAGTATTCCGTCCAC+CGG | 0.490687 | 3.3:+46231211 | None:intergenic |
| AAATAAATGCTTTCTTGGAA+GGG | 0.491087 | 3.3:-46231118 | MS.gene66186:CDS |
| TTGGAGTGGCTGTTCTGCGA+AGG | 0.496976 | 3.3:-46229590 | MS.gene66186:CDS |
| CCCAAAACCATTGAATCACC+GGG | 0.499802 | 3.3:+46230770 | None:intergenic |
| ATGTTTCAGGTGCCTCTAGA+GGG | 0.525479 | 3.3:-46230281 | MS.gene66186:intron |
| AATGTTTCAGGTGCCTCTAG+AGG | 0.525907 | 3.3:-46230282 | MS.gene66186:intron |
| ACAAACTTACAATCAATATC+GGG | 0.528402 | 3.3:+46231020 | None:intergenic |
| TCCACAACAGTCACAGATGT+TGG | 0.532574 | 3.3:+46229545 | None:intergenic |
| CTAAACAACATTTGGAAGAG+AGG | 0.548837 | 3.3:-46230000 | MS.gene66186:intron |
| ACTTGCCTTCTGCTCATACA+TGG | 0.550247 | 3.3:-46230187 | MS.gene66186:intron |
| ATGAGTTGATTCCCGGTGGA+CGG | 0.550628 | 3.3:-46231223 | MS.gene66186:CDS |
| ACCTGTTGCGGCAGTTGGAG+TGG | 0.551185 | 3.3:-46229604 | MS.gene66186:CDS |
| AGGTTTCAGCAAAGAGGACA+AGG | 0.551546 | 3.3:-46230737 | MS.gene66186:CDS |
| TGGAGTGGCTGTTCTGCGAA+GGG | 0.558490 | 3.3:-46229589 | MS.gene66186:CDS |
| TGGTACCATGTATGAGCAGA+AGG | 0.570039 | 3.3:+46230182 | None:intergenic |
| TGTTGTTTAGATGGATACTC+CGG | 0.574334 | 3.3:+46230013 | None:intergenic |
| AACTGTCGCAGCACCTGTTG+CGG | 0.580189 | 3.3:-46229616 | MS.gene66186:CDS |
| TGTTCAAGGTTTCAGCAAAG+AGG | 0.581537 | 3.3:-46230743 | MS.gene66186:CDS |
| GTTTGTGACAGGCACTTCCA+AGG | 0.591526 | 3.3:-46230701 | MS.gene66186:intron |
| GCAGATTGCGACTGTTAGAA+GGG | 0.595279 | 3.3:+46229498 | None:intergenic |
| ACTTTAGTATTCCGTCCACC+GGG | 0.596825 | 3.3:+46231212 | None:intergenic |
| ACAGTTGTCAACCGTCGCAA+AGG | 0.602010 | 3.3:+46229633 | None:intergenic |
| CCCAACATCTGTGACTGTTG+TGG | 0.603384 | 3.3:-46229546 | MS.gene66186:CDS |
| CACAACAGTCACAGATGTTG+GGG | 0.604466 | 3.3:+46229547 | None:intergenic |
| ACATCTGTGACTGTTGTGGA+AGG | 0.605007 | 3.3:-46229542 | MS.gene66186:CDS |
| ACTAAAGCGCTCCTTTGCGA+CGG | 0.607375 | 3.3:-46229644 | MS.gene66186:intron |
| TCAGCAAAGAGGACAAGGCT+AGG | 0.611890 | 3.3:-46230732 | MS.gene66186:CDS |
| GAACTGGAACTATTGATCAG+TGG | 0.637735 | 3.3:-46231047 | MS.gene66186:CDS |
| GTTCGGTGAAATAATTCCGA+AGG | 0.644631 | 3.3:-46231096 | MS.gene66186:CDS |
| GATTATGAGTTGATTCCCGG+TGG | 0.660118 | 3.3:-46231227 | MS.gene66186:CDS |
| AGTGCGCTAAAACCCTCTAG+AGG | 0.690121 | 3.3:+46230269 | None:intergenic |
| TCAAAAGTTTCAAATACACA+AGG | 0.697802 | 3.3:-46230228 | MS.gene66186:CDS |
| CATCTGTGACTGTTGTGGAA+GGG | 0.699182 | 3.3:-46229541 | MS.gene66186:CDS |
| ACGGAATACTAAAGTTACAG+AGG | 0.721312 | 3.3:-46231204 | MS.gene66186:CDS |
| CCAAAACCATTGAATCACCG+GGG | 0.753804 | 3.3:+46230771 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTAAAAAAAATAA+AGG | + | chr3.3:46231468-46231487 | None:intergenic | 0.0% |
| !! | AAAAAAAATAAAATTGAATG+GGG | + | chr3.3:46231401-46231420 | None:intergenic | 10.0% |
| !! | TTTGAAAGAATTATATATAT+GGG | - | chr3.3:46231336-46231355 | MS.gene66186:intron | 10.0% |
| !!! | TATGTATTTTATTTATTGTT+TGG | - | chr3.3:46231272-46231291 | MS.gene66186:intron | 10.0% |
| !!! | TTTTGAAAGAATTATATATA+TGG | - | chr3.3:46231335-46231354 | MS.gene66186:intron | 10.0% |
| !!! | TTTTTATTTTTAGATATGTT+GGG | + | chr3.3:46229671-46229690 | None:intergenic | 10.0% |
| !!! | TTTTTTATTTTTAGATATGT+TGG | + | chr3.3:46229672-46229691 | None:intergenic | 10.0% |
| !! | CTTATTTCAAAAATTTGAAA+TGG | - | chr3.3:46229608-46229627 | MS.gene66186:CDS | 15.0% |
| !! | TTTAAAAGATTGAATAATGT+TGG | - | chr3.3:46230795-46230814 | MS.gene66186:CDS | 15.0% |
| !!! | ATAGAAAATCACTAAATTTT+GGG | + | chr3.3:46230553-46230572 | None:intergenic | 15.0% |
| !!! | ATATTGGAAATACTTTTATT+TGG | - | chr3.3:46230591-46230610 | MS.gene66186:intron | 15.0% |
| !!! | TAAACATTTTGATCTTTTAT+TGG | - | chr3.3:46230521-46230540 | MS.gene66186:intron | 15.0% |
| !!! | TTTTATTTATTGTTTGGATT+TGG | - | chr3.3:46231278-46231297 | MS.gene66186:intron | 15.0% |
| !! | AAAGAAACTCAATAAAGATT+AGG | + | chr3.3:46230198-46230217 | None:intergenic | 20.0% |
| !! | AACAAACTTACAATCAATAT+CGG | + | chr3.3:46230164-46230183 | None:intergenic | 20.0% |
| !! | AATATCATGATATGTAACTT+TGG | + | chr3.3:46229572-46229591 | None:intergenic | 20.0% |
| !! | TAATCTGAATGAATATGTTT+AGG | - | chr3.3:46229925-46229944 | MS.gene66186:intron | 20.0% |
| !!! | AAATACTTTTATTTGGAGTT+CGG | - | chr3.3:46230598-46230617 | MS.gene66186:intron | 20.0% |
| !!! | AGAAAAGAAATTTTAACACT+CGG | - | chr3.3:46230320-46230339 | MS.gene66186:intron | 20.0% |
| !!! | AGTGTTAAAATTTCTTTTCT+AGG | + | chr3.3:46230320-46230339 | None:intergenic | 20.0% |
| !!! | ATTCTATCGACATAATTTTT+GGG | - | chr3.3:46231046-46231065 | MS.gene66186:CDS | 20.0% |
| !!! | CATAGAAAATCACTAAATTT+TGG | + | chr3.3:46230554-46230573 | None:intergenic | 20.0% |
| !!! | CGCTTTAGTTTAATTTAAAA+GGG | + | chr3.3:46231525-46231544 | None:intergenic | 20.0% |
| !!! | TAAAAGTATTTCCAATATGA+AGG | + | chr3.3:46230589-46230608 | None:intergenic | 20.0% |
| !!! | TACTAACATTTTCTTGTATT+TGG | - | chr3.3:46229710-46229729 | MS.gene66186:intron | 20.0% |
| !!! | TATTCTATCGACATAATTTT+TGG | - | chr3.3:46231045-46231064 | MS.gene66186:CDS | 20.0% |
| !!! | TTCAAATTTTTGAAATAAGC+CGG | + | chr3.3:46229607-46229626 | None:intergenic | 20.0% |
| ! | AAATAAATGCTTTCTTGGAA+GGG | - | chr3.3:46230062-46230081 | MS.gene66186:intron | 25.0% |
| ! | AACATGTAATGTACGATTAA+TGG | - | chr3.3:46230858-46230877 | MS.gene66186:intron | 25.0% |
| ! | AAGAAAGTAAACAGAAAAAC+TGG | + | chr3.3:46230670-46230689 | None:intergenic | 25.0% |
| ! | AATATAGATATCAACTCCTT+CGG | + | chr3.3:46230103-46230122 | None:intergenic | 25.0% |
| ! | ACAAACTTACAATCAATATC+GGG | + | chr3.3:46230163-46230182 | None:intergenic | 25.0% |
| ! | ACATGTAATGTACGATTAAT+GGG | - | chr3.3:46230859-46230878 | MS.gene66186:intron | 25.0% |
| ! | TATAGAATGATCGAGTAAAA+TGG | + | chr3.3:46229534-46229553 | None:intergenic | 25.0% |
| ! | TATATTCAATGACAAAGAAC+TGG | - | chr3.3:46230117-46230136 | MS.gene66186:intron | 25.0% |
| ! | TCAAAAGTTTCAAATACACA+AGG | - | chr3.3:46230952-46230971 | MS.gene66186:intron | 25.0% |
| ! | TGAGAAATTATCCTTCATAT+TGG | - | chr3.3:46230575-46230594 | MS.gene66186:intron | 25.0% |
| ! | TTTCAATCAATTAGATTTGC+CGG | - | chr3.3:46231148-46231167 | MS.gene66186:CDS | 25.0% |
| !! | GCGCTTTAGTTTAATTTAAA+AGG | + | chr3.3:46231526-46231545 | None:intergenic | 25.0% |
| !! | TAAGCATCAATATGTTGATT+TGG | - | chr3.3:46230003-46230022 | MS.gene66186:CDS | 25.0% |
| !!! | ATAATTTTTGGGTCAAGTTT+TGG | - | chr3.3:46231057-46231076 | MS.gene66186:CDS | 25.0% |
| !!! | GGTTATACATTTTATTTCAG+TGG | - | chr3.3:46230341-46230360 | MS.gene66186:intron | 25.0% |
| !!! | TTATTTTTAGATATGTTGGG+TGG | + | chr3.3:46229668-46229687 | None:intergenic | 25.0% |
| AAATTAACATTTGCGACTGT+TGG | - | chr3.3:46231428-46231447 | MS.gene66186:CDS | 30.0% | |
| ACCTCAAATAAATGCTTTCT+TGG | - | chr3.3:46230057-46230076 | MS.gene66186:intron | 30.0% | |
| AGAGCAAATACAGAATATTC+TGG | - | chr3.3:46230372-46230391 | MS.gene66186:intron | 30.0% | |
| AGATTAGACAGTTAACAATG+AGG | + | chr3.3:46229911-46229930 | None:intergenic | 30.0% | |
| CAAATAAATGCTTTCTTGGA+AGG | - | chr3.3:46230061-46230080 | MS.gene66186:intron | 30.0% | |
| GAATAGAATGACATCAACAA+AGG | + | chr3.3:46230253-46230272 | None:intergenic | 30.0% | |
| GTATCCATCTAAACAACATT+TGG | - | chr3.3:46231172-46231191 | MS.gene66186:CDS | 30.0% | |
| TCATTCTATAAGCACATTCT+AGG | - | chr3.3:46229544-46229563 | MS.gene66186:CDS | 30.0% | |
| TCTGTTTACTTTCTTCCAAA+TGG | - | chr3.3:46230675-46230694 | MS.gene66186:intron | 30.0% | |
| TGATATTGAAGCTATTGATC+CGG | - | chr3.3:46229585-46229604 | MS.gene66186:CDS | 30.0% | |
| TTGAGATGATATTGATGCAT+TGG | - | chr3.3:46229882-46229901 | MS.gene66186:intron | 30.0% | |
| TTTCAAATACACAAGGCATA+TGG | - | chr3.3:46230959-46230978 | MS.gene66186:intron | 30.0% | |
| ! | ATTTTTGCTTCCAATGTTTC+AGG | - | chr3.3:46230886-46230905 | MS.gene66186:intron | 30.0% |
| ! | TCTTCCAAATGTTGTTTAGA+TGG | + | chr3.3:46231179-46231198 | None:intergenic | 30.0% |
| !! | TCCAAGAAAGCATTTATTTG+AGG | + | chr3.3:46230061-46230080 | None:intergenic | 30.0% |
| ACCAACTGAAAGTAGAGAAA+TGG | + | chr3.3:46231021-46231040 | None:intergenic | 35.0% | |
| ACCATTTCTCTACTTTCAGT+TGG | - | chr3.3:46231017-46231036 | MS.gene66186:intron | 35.0% | |
| ACGGAATACTAAAGTTACAG+AGG | - | chr3.3:46229976-46229995 | MS.gene66186:intron | 35.0% | |
| CTAAACAACATTTGGAAGAG+AGG | - | chr3.3:46231180-46231199 | MS.gene66186:CDS | 35.0% | |
| GAATGATATCAGTGATGTTC+TGG | - | chr3.3:46229743-46229762 | MS.gene66186:intron | 35.0% | |
| TGCATTCTATTCCAATACTC+TGG | - | chr3.3:46230759-46230778 | MS.gene66186:CDS | 35.0% | |
| TTGTATTGAAGACTTGAAGC+TGG | - | chr3.3:46230822-46230841 | MS.gene66186:CDS | 35.0% | |
| ! | AAATTTGAAATGGCTGCTTG+AGG | - | chr3.3:46229618-46229637 | MS.gene66186:CDS | 35.0% |
| ! | TGTTGTTTAGATGGATACTC+CGG | + | chr3.3:46231170-46231189 | None:intergenic | 35.0% |
| !! | AACATCTGCGACTATTTTGA+AGG | - | chr3.3:46231491-46231510 | MS.gene66186:intron | 35.0% |
| !! | ACATCTGCGACTATTTTGAA+GGG | - | chr3.3:46231492-46231511 | MS.gene66186:intron | 35.0% |
| !! | ACTGATTATGAGTTGATTCC+CGG | - | chr3.3:46229950-46229969 | MS.gene66186:intron | 35.0% |
| !! | GCTCTGAAAGAAATATACCT+TGG | + | chr3.3:46230499-46230518 | None:intergenic | 35.0% |
| !!! | TTTTAGCATTGATGCAGATG+AGG | - | chr3.3:46229773-46229792 | MS.gene66186:intron | 35.0% |
| AACTTTAGTATTCCGTCCAC+CGG | + | chr3.3:46229972-46229991 | None:intergenic | 40.0% | |
| AATGCTTTCTTGGAAGGGTT+CGG | - | chr3.3:46230067-46230086 | MS.gene66186:intron | 40.0% | |
| AGCAAATGAGGGATTTGGAT+TGG | - | chr3.3:46231223-46231242 | MS.gene66186:CDS | 40.0% | |
| CATGAAGCAAATGAGGGATT+TGG | - | chr3.3:46231218-46231237 | MS.gene66186:CDS | 40.0% | |
| CTAGCTCATTTGATTGATGC+TGG | - | chr3.3:46230272-46230291 | MS.gene66186:CDS | 40.0% | |
| GAACTGGAACTATTGATCAG+TGG | - | chr3.3:46230133-46230152 | MS.gene66186:intron | 40.0% | |
| GCGATTCATGAAGCAAATGA+GGG | - | chr3.3:46231212-46231231 | MS.gene66186:CDS | 40.0% | |
| TCCCAAAACCATTGAATCAC+CGG | + | chr3.3:46230414-46230433 | None:intergenic | 40.0% | |
| TGCGATTCATGAAGCAAATG+AGG | - | chr3.3:46231211-46231230 | MS.gene66186:CDS | 40.0% | |
| TGTTCAAGGTTTCAGCAAAG+AGG | - | chr3.3:46230437-46230456 | MS.gene66186:intron | 40.0% | |
| ! | CTTGAGGCAAGTGCAATTTT+TGG | - | chr3.3:46229634-46229653 | MS.gene66186:CDS | 40.0% |
| ! | GTTCGGTGAAATAATTCCGA+AGG | - | chr3.3:46230084-46230103 | MS.gene66186:intron | 40.0% |
| ! | TTCCAAATGGTCGAGAGTTT+TGG | - | chr3.3:46230688-46230707 | MS.gene66186:intron | 40.0% |
| !! | GTTTTGGTGTATGTGTCACA+TGG | - | chr3.3:46230704-46230723 | MS.gene66186:CDS | 40.0% |
| ACATCTGTGACTGTTGTGGA+AGG | - | chr3.3:46231638-46231657 | MS.gene66186:intron | 45.0% | |
| ACGAGAGAAAGCCAGAGTAT+TGG | + | chr3.3:46230773-46230792 | None:intergenic | 45.0% | |
| ACTTGCCTTCTGCTCATACA+TGG | - | chr3.3:46230993-46231012 | MS.gene66186:intron | 45.0% | |
| ACTTTAGTATTCCGTCCACC+GGG | + | chr3.3:46229971-46229990 | None:intergenic | 45.0% | |
| AGCGCACTTCAAGGAATTTC+AGG | - | chr3.3:46230926-46230945 | MS.gene66186:intron | 45.0% | |
| AGGTTTCAGCAAAGAGGACA+AGG | - | chr3.3:46230443-46230462 | MS.gene66186:intron | 45.0% | |
| CACAACAGTCACAGATGTTG+GGG | + | chr3.3:46231636-46231655 | None:intergenic | 45.0% | |
| CACCAAAACTCTCGACCATT+TGG | + | chr3.3:46230693-46230712 | None:intergenic | 45.0% | |
| CATCTGTGACTGTTGTGGAA+GGG | - | chr3.3:46231639-46231658 | MS.gene66186:intron | 45.0% | |
| CCAAAACCATTGAATCACCG+GGG | + | chr3.3:46230412-46230431 | None:intergenic | 45.0% | |
| CCACAACAGTCACAGATGTT+GGG | + | chr3.3:46231637-46231656 | None:intergenic | 45.0% | |
| CCCAAAACCATTGAATCACC+GGG | + | chr3.3:46230413-46230432 | None:intergenic | 45.0% | |
| TCCACAACAGTCACAGATGT+TGG | + | chr3.3:46231638-46231657 | None:intergenic | 45.0% | |
| TGAAGACTTGAAGCTGGACT+TGG | - | chr3.3:46230828-46230847 | MS.gene66186:intron | 45.0% | |
| TGGTACCATGTATGAGCAGA+AGG | + | chr3.3:46231001-46231020 | None:intergenic | 45.0% | |
| ! | AATGTTTCAGGTGCCTCTAG+AGG | - | chr3.3:46230898-46230917 | MS.gene66186:intron | 45.0% |
| ! | ACATTTGCGACTGTTGGTGA+AGG | - | chr3.3:46231434-46231453 | MS.gene66186:CDS | 45.0% |
| ! | ATGTTTCAGGTGCCTCTAGA+GGG | - | chr3.3:46230899-46230918 | MS.gene66186:intron | 45.0% |
| ! | CATTTGCGACTGTTGGTGAA+GGG | - | chr3.3:46231435-46231454 | MS.gene66186:CDS | 45.0% |
| ! | CCCGGTGATTCAATGGTTTT+GGG | - | chr3.3:46230410-46230429 | MS.gene66186:intron | 45.0% |
| !! | GATTATGAGTTGATTCCCGG+TGG | - | chr3.3:46229953-46229972 | MS.gene66186:intron | 45.0% |
| !! | TCTAGAGGCACCTGAAACAT+TGG | + | chr3.3:46230899-46230918 | None:intergenic | 45.0% |
| !!! | GGTGATTCAATGGTTTTGGG+AGG | - | chr3.3:46230413-46230432 | MS.gene66186:intron | 45.0% |
| !!! | TGGTTTTGGGAGGTTGTTCA+AGG | - | chr3.3:46230423-46230442 | MS.gene66186:intron | 45.0% |
| !! | AAAAAAAAATAAAATTGAAT+GGG | + | chr3.3:46231402-46231421 | None:intergenic | 5.0% |
| !! | TAAAAAAAAATAAAATTGAA+TGG | + | chr3.3:46231403-46231422 | None:intergenic | 5.0% |
| !! | TGTTATATATTTATTTAAAT+TGG | - | chr3.3:46231373-46231392 | MS.gene66186:intron | 5.0% |
| ACAGTTGTCAACCGTCGCAA+AGG | + | chr3.3:46231550-46231569 | None:intergenic | 50.0% | |
| AGGCTGTTGCAGTTTGTGAC+AGG | - | chr3.3:46230468-46230487 | MS.gene66186:intron | 50.0% | |
| AGTGCGCTAAAACCCTCTAG+AGG | + | chr3.3:46230914-46230933 | None:intergenic | 50.0% | |
| CCCAACATCTGTGACTGTTG+TGG | - | chr3.3:46231634-46231653 | MS.gene66186:intron | 50.0% | |
| GTTTGTGACAGGCACTTCCA+AGG | - | chr3.3:46230479-46230498 | MS.gene66186:intron | 50.0% | |
| TCAGCAAAGAGGACAAGGCT+AGG | - | chr3.3:46230448-46230467 | MS.gene66186:intron | 50.0% | |
| ! | ACTAAAGCGCTCCTTTGCGA+CGG | - | chr3.3:46231536-46231555 | MS.gene66186:intron | 50.0% |
| ! | CCCCGGTGATTCAATGGTTT+TGG | - | chr3.3:46230409-46230428 | MS.gene66186:intron | 50.0% |
| !! | ATGAGTTGATTCCCGGTGGA+CGG | - | chr3.3:46229957-46229976 | MS.gene66186:intron | 50.0% |
| !! | GAGGGTTTTAGCGCACTTCA+AGG | - | chr3.3:46230917-46230936 | MS.gene66186:intron | 50.0% |
| !! | TGGATATAGTGCTGCTTCCC+CGG | - | chr3.3:46230392-46230411 | MS.gene66186:intron | 50.0% |
| AACTGTCGCAGCACCTGTTG+CGG | - | chr3.3:46231564-46231583 | MS.gene66186:intron | 55.0% | |
| CTGCTTCCCCGGTGATTCAA+TGG | - | chr3.3:46230403-46230422 | MS.gene66186:intron | 55.0% | |
| TGGAGTGGCTGTTCTGCGAA+GGG | - | chr3.3:46231591-46231610 | MS.gene66186:intron | 55.0% | |
| TTGGAGTGGCTGTTCTGCGA+AGG | - | chr3.3:46231590-46231609 | MS.gene66186:intron | 55.0% | |
| ACCTGTTGCGGCAGTTGGAG+TGG | - | chr3.3:46231576-46231595 | MS.gene66186:intron | 60.0% | |
| GCAGCACCTGTTGCGGCAGT+TGG | - | chr3.3:46231571-46231590 | MS.gene66186:intron | 65.0% | |
| GCCACTCCAACTGCCGCAAC+AGG | + | chr3.3:46231580-46231599 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 46229512 | 46231690 | 46229512 | ID=MS.gene66186 |
| chr3.3 | mRNA | 46229512 | 46231690 | 46229512 | ID=MS.gene66186.t1;Parent=MS.gene66186 |
| chr3.3 | exon | 46231688 | 46231690 | 46231688 | ID=MS.gene66186.t1.exon1;Parent=MS.gene66186.t1 |
| chr3.3 | CDS | 46231688 | 46231690 | 46231688 | ID=cds.MS.gene66186.t1;Parent=MS.gene66186.t1 |
| chr3.3 | exon | 46231378 | 46231458 | 46231378 | ID=MS.gene66186.t1.exon2;Parent=MS.gene66186.t1 |
| chr3.3 | CDS | 46231378 | 46231458 | 46231378 | ID=cds.MS.gene66186.t1;Parent=MS.gene66186.t1 |
| chr3.3 | exon | 46231030 | 46231255 | 46231030 | ID=MS.gene66186.t1.exon3;Parent=MS.gene66186.t1 |
| chr3.3 | CDS | 46231030 | 46231255 | 46231030 | ID=cds.MS.gene66186.t1;Parent=MS.gene66186.t1 |
| chr3.3 | exon | 46230702 | 46230841 | 46230702 | ID=MS.gene66186.t1.exon4;Parent=MS.gene66186.t1 |
| chr3.3 | CDS | 46230702 | 46230841 | 46230702 | ID=cds.MS.gene66186.t1;Parent=MS.gene66186.t1 |
| chr3.3 | exon | 46230188 | 46230294 | 46230188 | ID=MS.gene66186.t1.exon5;Parent=MS.gene66186.t1 |
| chr3.3 | CDS | 46230188 | 46230294 | 46230188 | ID=cds.MS.gene66186.t1;Parent=MS.gene66186.t1 |
| chr3.3 | exon | 46230001 | 46230054 | 46230001 | ID=MS.gene66186.t1.exon6;Parent=MS.gene66186.t1 |
| chr3.3 | CDS | 46230001 | 46230054 | 46230001 | ID=cds.MS.gene66186.t1;Parent=MS.gene66186.t1 |
| chr3.3 | exon | 46229512 | 46229659 | 46229512 | ID=MS.gene66186.t1.exon7;Parent=MS.gene66186.t1 |
| chr3.3 | CDS | 46229512 | 46229659 | 46229512 | ID=cds.MS.gene66186.t1;Parent=MS.gene66186.t1 |
| Gene Sequence |
| Protein sequence |
