Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66468.t1 | XP_003589058.1 | 99.5 | 195 | 1 | 0 | 1 | 195 | 1 | 195 | 5.60E-113 | 416.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66468.t1 | Q94JX5 | 85.4 | 185 | 26 | 1 | 1 | 185 | 1 | 184 | 3.3e-93 | 342.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66468.t1 | B7FH07 | 99.5 | 195 | 1 | 0 | 1 | 195 | 1 | 195 | 4.1e-113 | 416.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene66468.t1 | TF | LIM |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene66468 | 0.826157 | 3.16E-54 | -1.69E-46 |
| MS.gene050838 | MS.gene66468 | 0.801942 | 7.10E-49 | -1.69E-46 |
| MS.gene051687 | MS.gene66468 | 0.99582 | 3.02E-220 | -1.69E-46 |
| MS.gene051700 | MS.gene66468 | 0.804273 | 2.34E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene66468 | 0.827102 | 1.88E-54 | -1.69E-46 |
| MS.gene051748 | MS.gene66468 | 0.814572 | 1.44E-51 | -1.69E-46 |
| MS.gene051850 | MS.gene66468 | 0.803332 | 3.67E-49 | -1.69E-46 |
| MS.gene051885 | MS.gene66468 | 0.80889 | 2.48E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene66468 | 0.808585 | 2.88E-50 | -1.69E-46 |
| MS.gene052133 | MS.gene66468 | 0.809979 | 1.45E-50 | -1.69E-46 |
| MS.gene052302 | MS.gene66468 | 0.806076 | 9.80E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene66468 | 0.801646 | 8.16E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene66468 | 0.835282 | 1.84E-56 | -1.69E-46 |
| MS.gene055424 | MS.gene66468 | 0.815555 | 8.71E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene66468 | 0.808135 | 3.59E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene66468 | -0.806118 | 9.61E-50 | -1.69E-46 |
| MS.gene055591 | MS.gene66468 | -0.809288 | 2.04E-50 | -1.69E-46 |
| MS.gene056043 | MS.gene66468 | -0.825748 | 3.96E-54 | -1.69E-46 |
| MS.gene056075 | MS.gene66468 | 0.818699 | 1.71E-52 | -1.69E-46 |
| MS.gene056584 | MS.gene66468 | 0.800692 | 1.28E-48 | -1.69E-46 |
| MS.gene056830 | MS.gene66468 | -0.812526 | 4.06E-51 | -1.69E-46 |
| MS.gene057094 | MS.gene66468 | 0.809957 | 1.46E-50 | -1.69E-46 |
| MS.gene058074 | MS.gene66468 | 0.812723 | 3.67E-51 | -1.69E-46 |
| MS.gene058852 | MS.gene66468 | 0.817147 | 3.83E-52 | -1.69E-46 |
| MS.gene059171 | MS.gene66468 | 0.810882 | 9.24E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene66468 | 0.859684 | 3.49E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66468.t1 | MTR_1g017950 | 99.487 | 195 | 1 | 0 | 1 | 195 | 1 | 195 | 4.05e-146 | 404 |
| MS.gene66468.t1 | MTR_4g106800 | 66.857 | 175 | 57 | 1 | 2 | 176 | 3 | 176 | 1.70e-87 | 255 |
| MS.gene66468.t1 | MTR_3g070050 | 58.757 | 177 | 69 | 2 | 1 | 175 | 1 | 175 | 3.02e-70 | 212 |
| MS.gene66468.t1 | MTR_8g031490 | 50.820 | 183 | 83 | 3 | 1 | 182 | 1 | 177 | 2.64e-61 | 189 |
| MS.gene66468.t1 | MTR_8g097300 | 54.802 | 177 | 68 | 4 | 1 | 175 | 1 | 167 | 9.79e-61 | 188 |
| MS.gene66468.t1 | MTR_7g076720 | 50.857 | 175 | 82 | 2 | 1 | 175 | 1 | 171 | 3.28e-60 | 187 |
| MS.gene66468.t1 | MTR_3g070050 | 53.731 | 134 | 58 | 2 | 44 | 175 | 2 | 133 | 3.89e-45 | 146 |
| MS.gene66468.t1 | MTR_3g070050 | 47.826 | 69 | 36 | 0 | 3 | 71 | 61 | 129 | 1.42e-18 | 78.6 |
| MS.gene66468.t1 | MTR_1g106100 | 58.559 | 111 | 40 | 2 | 59 | 168 | 20 | 125 | 6.39e-38 | 128 |
| MS.gene66468.t1 | MTR_3g070033 | 66.038 | 53 | 18 | 0 | 123 | 175 | 6 | 58 | 3.58e-18 | 75.5 |
| MS.gene66468.t1 | MTR_3g070033 | 46.939 | 49 | 26 | 0 | 23 | 71 | 6 | 54 | 6.90e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66468.t1 | AT1G10200 | 85.246 | 183 | 27 | 0 | 1 | 183 | 1 | 183 | 2.62e-116 | 328 |
| MS.gene66468.t1 | AT1G10200 | 82.014 | 139 | 25 | 0 | 45 | 183 | 3 | 141 | 2.77e-82 | 241 |
| MS.gene66468.t1 | AT1G10200 | 44.444 | 72 | 40 | 0 | 3 | 74 | 61 | 132 | 2.24e-16 | 72.8 |
| MS.gene66468.t1 | AT2G39900 | 58.192 | 177 | 69 | 2 | 1 | 175 | 1 | 174 | 2.13e-69 | 210 |
| MS.gene66468.t1 | AT3G55770 | 55.307 | 179 | 70 | 2 | 1 | 175 | 1 | 173 | 2.52e-67 | 205 |
| MS.gene66468.t1 | AT3G55770 | 43.678 | 87 | 49 | 0 | 103 | 189 | 3 | 89 | 5.85e-16 | 73.2 |
| MS.gene66468.t1 | AT3G55770 | 55.307 | 179 | 70 | 2 | 1 | 175 | 1 | 173 | 2.52e-67 | 205 |
| MS.gene66468.t1 | AT3G55770 | 43.678 | 87 | 49 | 0 | 103 | 189 | 3 | 89 | 5.85e-16 | 73.2 |
| MS.gene66468.t1 | AT3G55770 | 55.307 | 179 | 70 | 2 | 1 | 175 | 1 | 173 | 2.52e-67 | 205 |
| MS.gene66468.t1 | AT3G55770 | 43.678 | 87 | 49 | 0 | 103 | 189 | 3 | 89 | 5.85e-16 | 73.2 |
| MS.gene66468.t1 | AT3G55770 | 55.307 | 179 | 70 | 2 | 1 | 175 | 1 | 173 | 2.52e-67 | 205 |
| MS.gene66468.t1 | AT3G55770 | 43.678 | 87 | 49 | 0 | 103 | 189 | 3 | 89 | 5.85e-16 | 73.2 |
| MS.gene66468.t1 | AT2G45800 | 50.000 | 186 | 86 | 2 | 1 | 183 | 1 | 182 | 3.75e-61 | 190 |
| MS.gene66468.t1 | AT1G01780 | 48.649 | 185 | 87 | 3 | 1 | 183 | 1 | 179 | 2.17e-60 | 187 |
| MS.gene66468.t1 | AT3G61230 | 47.917 | 192 | 93 | 3 | 2 | 190 | 3 | 190 | 8.55e-60 | 186 |
| MS.gene66468.t1 | AT3G61230 | 36.792 | 106 | 67 | 0 | 3 | 108 | 100 | 205 | 3.58e-17 | 76.6 |
| MS.gene66468.t1 | AT3G55770 | 46.479 | 213 | 70 | 3 | 1 | 175 | 1 | 207 | 1.60e-59 | 186 |
| MS.gene66468.t1 | AT3G55770 | 43.678 | 87 | 49 | 0 | 103 | 189 | 3 | 89 | 1.44e-15 | 72.8 |
| MS.gene66468.t1 | AT3G55770 | 48.201 | 139 | 61 | 3 | 1 | 135 | 1 | 132 | 2.16e-40 | 134 |
| MS.gene66468.t1 | AT3G55770 | 43.678 | 87 | 49 | 0 | 103 | 189 | 3 | 89 | 5.56e-17 | 74.3 |
| MS.gene66468.t1 | AT2G45800 | 45.455 | 154 | 76 | 3 | 34 | 184 | 4 | 152 | 4.96e-39 | 132 |
| MS.gene66468.t1 | AT2G45800 | 50.725 | 69 | 34 | 0 | 3 | 71 | 68 | 136 | 1.35e-16 | 74.7 |
| MS.gene66468.t1 | AT3G55770 | 48.462 | 130 | 57 | 2 | 1 | 126 | 1 | 124 | 1.92e-38 | 129 |
| MS.gene66468.t1 | AT3G55770 | 43.678 | 87 | 49 | 0 | 103 | 189 | 3 | 89 | 5.92e-17 | 73.9 |
Find 36 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTATCTATATTTCTTTC+TGG | 0.117591 | 1.4:-5002181 | None:intergenic |
| TCCCTCATGGGCTATGTAAT+TGG | 0.293058 | 1.4:-5002748 | None:intergenic |
| AGCATTTGAAACAACTCTTA+TGG | 0.319973 | 1.4:-5002698 | None:intergenic |
| TTTATAAAGGTTACAGTGAA+TGG | 0.352930 | 1.4:+5002666 | MS.gene66468:intron |
| TTTGCTTGATCAGTTGAATA+TGG | 0.353364 | 1.4:-5002791 | None:intergenic |
| CTTGAGGCTTTAGCTGCTGC+AGG | 0.425078 | 1.4:-5002306 | None:intergenic |
| TATTCAACTGATCAAGCAAA+AGG | 0.432443 | 1.4:+5002794 | MS.gene66468:CDS |
| GCTAAAGCCTCAAGTATGTT+TGG | 0.441559 | 1.4:+5002315 | MS.gene66468:CDS |
| GACCAACTGTTCAAAAGAAC+TGG | 0.444337 | 1.4:+5002019 | MS.gene66468:CDS |
| ACACTAATTACCTTCTCTGT+TGG | 0.465114 | 1.4:-5002381 | None:intergenic |
| GGAAATTTGAGCCAGCTTGA+AGG | 0.475377 | 1.4:+5002816 | MS.gene66468:CDS |
| GGAACAAGGGACAAATGTTC+TGG | 0.477611 | 1.4:+5002339 | MS.gene66468:CDS |
| TCTCATGGTCACCTTCAAGC+TGG | 0.480325 | 1.4:-5002827 | None:intergenic |
| CAAGTATGTTTGGTGGAACA+AGG | 0.495604 | 1.4:+5002325 | MS.gene66468:CDS |
| TTGAAACAACTCTTATGGTA+AGG | 0.498185 | 1.4:-5002693 | None:intergenic |
| AGAAAGAAATATAGATAATG+AGG | 0.518674 | 1.4:+5002183 | MS.gene66468:CDS |
| CCTTGAGGGTTCCTTTGCAG+TGG | 0.520760 | 1.4:-5001543 | None:intergenic |
| GAGAGAGACATAGACCTTGA+GGG | 0.525903 | 1.4:-5001557 | None:intergenic |
| GACTAATAGTACACCCTCCA+TGG | 0.536605 | 1.4:-5002722 | None:intergenic |
| AGGAACAACTCAGAAGTGTA+TGG | 0.560932 | 1.4:+5001441 | MS.gene66468:CDS |
| ATTCAACTGATCAAGCAAAA+GGG | 0.562604 | 1.4:+5002795 | MS.gene66468:CDS |
| AGTTGTTTCAAATGCTGCCA+TGG | 0.564010 | 1.4:+5002705 | MS.gene66468:CDS |
| GACATCTGAAACAAGCTTTG+TGG | 0.565667 | 1.4:-5001519 | None:intergenic |
| TTGAACAGTTGGTCGAAGTG+TGG | 0.580292 | 1.4:-5002010 | None:intergenic |
| TTCAGATGTCACCACTGCAA+AGG | 0.582786 | 1.4:+5001532 | MS.gene66468:CDS |
| GCTTGATCAGTTGAATATGG+TGG | 0.582930 | 1.4:-5002788 | None:intergenic |
| AAAGCCTCAAGTATGTTTGG+TGG | 0.587944 | 1.4:+5002318 | MS.gene66468:CDS |
| TCCAATTACATAGCCCATGA+GGG | 0.590710 | 1.4:+5002747 | MS.gene66468:CDS |
| GTTTCAAATGCTGCCATGGA+GGG | 0.597804 | 1.4:+5002709 | MS.gene66468:CDS |
| TGTTCCACCAAACATACTTG+AGG | 0.606764 | 1.4:-5002322 | None:intergenic |
| AACAGTGTATCCAACAGAGA+AGG | 0.613878 | 1.4:+5002371 | MS.gene66468:CDS |
| TTCCAATTACATAGCCCATG+AGG | 0.614856 | 1.4:+5002746 | MS.gene66468:CDS |
| TCATGGGCTATGTAATTGGA+AGG | 0.623562 | 1.4:-5002744 | None:intergenic |
| AAGTATGTTTGGTGGAACAA+GGG | 0.641097 | 1.4:+5002326 | MS.gene66468:CDS |
| CCACTGCAAAGGAACCCTCA+AGG | 0.664342 | 1.4:+5001543 | MS.gene66468:CDS |
| TGTTTCAAATGCTGCCATGG+AGG | 0.668776 | 1.4:+5002708 | MS.gene66468:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTCAAAAATAATTTTGTT+CGG | - | chr1.4:5002531-5002550 | None:intergenic | 15.0% |
| !!! | TCAATAATTTGCATTTATAA+AGG | + | chr1.4:5002653-5002672 | MS.gene66468:intron | 15.0% |
| !! | AGAAAGAAATATAGATAATG+AGG | + | chr1.4:5002183-5002202 | MS.gene66468:CDS | 20.0% |
| !! | GTTCATTAACATGAAAATTA+CGG | - | chr1.4:5001855-5001874 | None:intergenic | 20.0% |
| !! | TCATTATCTATATTTCTTTC+TGG | - | chr1.4:5002184-5002203 | None:intergenic | 20.0% |
| ! | AAACAGCTCAAAAAATCATA+TGG | - | chr1.4:5002276-5002295 | None:intergenic | 25.0% |
| ! | AATGAACTTCTTTCATCATT+TGG | + | chr1.4:5001868-5001887 | MS.gene66468:intron | 25.0% |
| ! | AGGTAATGAATTCTAAATCT+AGG | + | chr1.4:5002203-5002222 | MS.gene66468:intron | 25.0% |
| ! | AGGTAATTAGTGTATATGTT+TGG | + | chr1.4:5002391-5002410 | MS.gene66468:intron | 25.0% |
| ! | CATAGCTTAAGTAAAAACTA+TGG | + | chr1.4:5001741-5001760 | MS.gene66468:intron | 25.0% |
| ! | GAAAATTGTTACTGCATATT+TGG | - | chr1.4:5001794-5001813 | None:intergenic | 25.0% |
| ! | TTAGTACATGTTTCAATAGA+CGG | + | chr1.4:5001668-5001687 | MS.gene66468:intron | 25.0% |
| ! | TTTATAAAGGTTACAGTGAA+TGG | + | chr1.4:5002666-5002685 | MS.gene66468:intron | 25.0% |
| !! | AGTGTATATGTTTGGAATTA+CGG | + | chr1.4:5002399-5002418 | MS.gene66468:intron | 25.0% |
| !!! | AAGTTTTGTATTCAACATCA+GGG | - | chr1.4:5002615-5002634 | None:intergenic | 25.0% |
| !!! | ACTTTTGTTTTGCATACATA+GGG | + | chr1.4:5002140-5002159 | MS.gene66468:intron | 25.0% |
| !!! | TAAGTTTTGTATTCAACATC+AGG | - | chr1.4:5002616-5002635 | None:intergenic | 25.0% |
| !!! | TACTTTTGTTTTGCATACAT+AGG | + | chr1.4:5002139-5002158 | MS.gene66468:intron | 25.0% |
| !!! | TGTAGCTTTTTCTAAAATCA+TGG | + | chr1.4:5002472-5002491 | MS.gene66468:intron | 25.0% |
| !!! | TTTTGAGTTTGTGATTAGTT+TGG | + | chr1.4:5002542-5002561 | MS.gene66468:intron | 25.0% |
| AAAAATGCTGGGAAAATCAA+TGG | + | chr1.4:5002849-5002868 | MS.gene66468:CDS | 30.0% | |
| ACCAAAAAGAAATGTCTAAG+AGG | - | chr1.4:5001587-5001606 | None:intergenic | 30.0% | |
| ATTCAACTGATCAAGCAAAA+GGG | + | chr1.4:5002795-5002814 | MS.gene66468:CDS | 30.0% | |
| CATTAACATGAAAATTACGG+TGG | - | chr1.4:5001852-5001871 | None:intergenic | 30.0% | |
| TATTCAACTGATCAAGCAAA+AGG | + | chr1.4:5002794-5002813 | MS.gene66468:CDS | 30.0% | |
| TGAAAATGCTTATGAACAAC+TGG | - | chr1.4:5001822-5001841 | None:intergenic | 30.0% | |
| TTACTGCATATTTGGATTCA+CGG | - | chr1.4:5001786-5001805 | None:intergenic | 30.0% | |
| TTGAAACAACTCTTATGGTA+AGG | - | chr1.4:5002696-5002715 | None:intergenic | 30.0% | |
| TTTGCTTGATCAGTTGAATA+TGG | - | chr1.4:5002794-5002813 | None:intergenic | 30.0% | |
| ! | AAGCAACTACAATTCTTTTG+AGG | + | chr1.4:5001970-5001989 | MS.gene66468:CDS | 30.0% |
| ! | ACCTCTTAGACATTTCTTTT+TGG | + | chr1.4:5001583-5001602 | MS.gene66468:intron | 30.0% |
| ! | AGCAACTACAATTCTTTTGA+GGG | + | chr1.4:5001971-5001990 | MS.gene66468:CDS | 30.0% |
| ! | AGCATTTGAAACAACTCTTA+TGG | - | chr1.4:5002701-5002720 | None:intergenic | 30.0% |
| ! | TTCTTTCATCATTTGGCTTA+TGG | + | chr1.4:5001875-5001894 | MS.gene66468:intron | 30.0% |
| !! | AAAAGCTTTGAAGGTAACAA+AGG | + | chr1.4:5002052-5002071 | MS.gene66468:intron | 30.0% |
| !!! | AGCTTTTTCTAAAATCATGG+TGG | + | chr1.4:5002475-5002494 | MS.gene66468:intron | 30.0% |
| !!! | CTTTCTGGTTTGACAATTTT+TGG | - | chr1.4:5002169-5002188 | None:intergenic | 30.0% |
| !!! | TACCTTCAAAGCTTTTTTCA+AGG | - | chr1.4:5002048-5002067 | None:intergenic | 30.0% |
| ACACTAATTACCTTCTCTGT+TGG | - | chr1.4:5002384-5002403 | None:intergenic | 35.0% | |
| CTAACAGATCCAATACTAGA+AGG | - | chr1.4:5001631-5001650 | None:intergenic | 35.0% | |
| ! | AAGTATGTTTGGTGGAACAA+GGG | + | chr1.4:5002326-5002345 | MS.gene66468:CDS | 35.0% |
| ! | AGCCTTGAAAAAAGCTTTGA+AGG | + | chr1.4:5002043-5002062 | MS.gene66468:CDS | 35.0% |
| ! | CTAGTTTAGCCTTCTAGTAT+TGG | + | chr1.4:5001619-5001638 | MS.gene66468:intron | 35.0% |
| ! | TACCAGTTCTTTTGAACAGT+TGG | - | chr1.4:5002024-5002043 | None:intergenic | 35.0% |
| ! | TTTCATCATTTGGCTTATGG+AGG | + | chr1.4:5001878-5001897 | MS.gene66468:intron | 35.0% |
| ! | TTTTCCCAGCATTTTTCTCA+TGG | - | chr1.4:5002845-5002864 | None:intergenic | 35.0% |
| !! | CGGCTAGTTTAACAATATCA+CGG | + | chr1.4:5002419-5002438 | MS.gene66468:intron | 35.0% |
| AAAGCCTCAAGTATGTTTGG+TGG | + | chr1.4:5002318-5002337 | MS.gene66468:CDS | 40.0% | |
| AACAGTGTATCCAACAGAGA+AGG | + | chr1.4:5002371-5002390 | MS.gene66468:CDS | 40.0% | |
| GACCAACTGTTCAAAAGAAC+TGG | + | chr1.4:5002019-5002038 | MS.gene66468:CDS | 40.0% | |
| GCTAAAGCCTCAAGTATGTT+TGG | + | chr1.4:5002315-5002334 | MS.gene66468:CDS | 40.0% | |
| GCTTGATCAGTTGAATATGG+TGG | - | chr1.4:5002791-5002810 | None:intergenic | 40.0% | |
| GTGACCATGAGAAAAATGCT+GGG | + | chr1.4:5002838-5002857 | MS.gene66468:CDS | 40.0% | |
| GTTCGGATTTGTGATGAGTT+TGG | - | chr1.4:5002514-5002533 | None:intergenic | 40.0% | |
| TCCAATTACATAGCCCATGA+GGG | + | chr1.4:5002747-5002766 | MS.gene66468:CDS | 40.0% | |
| TGCAACTTTCGCCAAAATCA+CGG | - | chr1.4:5002586-5002605 | None:intergenic | 40.0% | |
| TGTTCCACCAAACATACTTG+AGG | - | chr1.4:5002325-5002344 | None:intergenic | 40.0% | |
| TTCCAATTACATAGCCCATG+AGG | + | chr1.4:5002746-5002765 | MS.gene66468:CDS | 40.0% | |
| ! | AGGAACAACTCAGAAGTGTA+TGG | + | chr1.4:5001441-5001460 | MS.gene66468:CDS | 40.0% |
| ! | AGTTGTTTCAAATGCTGCCA+TGG | + | chr1.4:5002705-5002724 | MS.gene66468:CDS | 40.0% |
| ! | CAAGTATGTTTGGTGGAACA+AGG | + | chr1.4:5002325-5002344 | MS.gene66468:CDS | 40.0% |
| ! | GACATCTGAAACAAGCTTTG+TGG | - | chr1.4:5001522-5001541 | None:intergenic | 40.0% |
| ! | TCATGGGCTATGTAATTGGA+AGG | - | chr1.4:5002747-5002766 | None:intergenic | 40.0% |
| GACTAATAGTACACCCTCCA+TGG | - | chr1.4:5002725-5002744 | None:intergenic | 45.0% | |
| GAGAGAGACATAGACCTTGA+GGG | - | chr1.4:5001560-5001579 | None:intergenic | 45.0% | |
| GATGAGTTTGGCAGAATCTG+TGG | - | chr1.4:5002502-5002521 | None:intergenic | 45.0% | |
| GGAAATTTGAGCCAGCTTGA+AGG | + | chr1.4:5002816-5002835 | MS.gene66468:CDS | 45.0% | |
| GGAACAAGGGACAAATGTTC+TGG | + | chr1.4:5002339-5002358 | MS.gene66468:CDS | 45.0% | |
| GGTGACCATGAGAAAAATGC+TGG | + | chr1.4:5002837-5002856 | MS.gene66468:CDS | 45.0% | |
| GTTTCAAATGCTGCCATGGA+GGG | + | chr1.4:5002709-5002728 | MS.gene66468:CDS | 45.0% | |
| TGAGAGAGACATAGACCTTG+AGG | - | chr1.4:5001561-5001580 | None:intergenic | 45.0% | |
| TGTTTCAAATGCTGCCATGG+AGG | + | chr1.4:5002708-5002727 | MS.gene66468:CDS | 45.0% | |
| TTCAGATGTCACCACTGCAA+AGG | + | chr1.4:5001532-5001551 | MS.gene66468:CDS | 45.0% | |
| TTGAACAGTTGGTCGAAGTG+TGG | - | chr1.4:5002013-5002032 | None:intergenic | 45.0% | |
| ! | GCAGTAGAGTTTTCCCTCAT+GGG | - | chr1.4:5002763-5002782 | None:intergenic | 45.0% |
| ! | TCATTGTGCGACCGTGATTT+TGG | + | chr1.4:5002572-5002591 | MS.gene66468:intron | 45.0% |
| ! | TCCCTCATGGGCTATGTAAT+TGG | - | chr1.4:5002751-5002770 | None:intergenic | 45.0% |
| ! | TGCAGTAGAGTTTTCCCTCA+TGG | - | chr1.4:5002764-5002783 | None:intergenic | 45.0% |
| TCTCATGGTCACCTTCAAGC+TGG | - | chr1.4:5002830-5002849 | None:intergenic | 50.0% | |
| CCACTGCAAAGGAACCCTCA+AGG | + | chr1.4:5001543-5001562 | MS.gene66468:CDS | 55.0% | |
| CCTTGAGGGTTCCTTTGCAG+TGG | - | chr1.4:5001546-5001565 | None:intergenic | 55.0% | |
| ! | CTTGAGGCTTTAGCTGCTGC+AGG | - | chr1.4:5002309-5002328 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 5001430 | 5002896 | 5001430 | ID=MS.gene66468 |
| chr1.4 | mRNA | 5001430 | 5002896 | 5001430 | ID=MS.gene66468.t1;Parent=MS.gene66468 |
| chr1.4 | exon | 5001430 | 5001564 | 5001430 | ID=MS.gene66468.t1.exon1;Parent=MS.gene66468.t1 |
| chr1.4 | CDS | 5001430 | 5001564 | 5001430 | ID=cds.MS.gene66468.t1;Parent=MS.gene66468.t1 |
| chr1.4 | exon | 5001968 | 5002064 | 5001968 | ID=MS.gene66468.t1.exon2;Parent=MS.gene66468.t1 |
| chr1.4 | CDS | 5001968 | 5002064 | 5001968 | ID=cds.MS.gene66468.t1;Parent=MS.gene66468.t1 |
| chr1.4 | exon | 5002161 | 5002204 | 5002161 | ID=MS.gene66468.t1.exon3;Parent=MS.gene66468.t1 |
| chr1.4 | CDS | 5002161 | 5002204 | 5002161 | ID=cds.MS.gene66468.t1;Parent=MS.gene66468.t1 |
| chr1.4 | exon | 5002303 | 5002392 | 5002303 | ID=MS.gene66468.t1.exon4;Parent=MS.gene66468.t1 |
| chr1.4 | CDS | 5002303 | 5002392 | 5002303 | ID=cds.MS.gene66468.t1;Parent=MS.gene66468.t1 |
| chr1.4 | exon | 5002675 | 5002896 | 5002675 | ID=MS.gene66468.t1.exon5;Parent=MS.gene66468.t1 |
| chr1.4 | CDS | 5002675 | 5002896 | 5002675 | ID=cds.MS.gene66468.t1;Parent=MS.gene66468.t1 |
| Gene Sequence |
| Protein sequence |
