AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene66496

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66496.t1 MTR_1g017400 97.419 465 9 1 1 465 199 660 0.0 946
MS.gene66496.t1 MTR_3g103460 71.096 429 87 11 53 464 249 657 0.0 574
MS.gene66496.t1 MTR_4g097520 59.268 410 134 9 70 465 265 655 1.75e-143 426
MS.gene66496.t1 MTR_5g015070 56.186 388 106 8 80 465 219 544 1.38e-126 379
MS.gene66496.t1 MTR_8g020510 55.586 367 133 9 4 350 136 492 2.29e-123 371
MS.gene66496.t1 MTR_4g127930 63.333 270 87 2 58 315 91 360 7.40e-118 355
MS.gene66496.t1 MTR_4g065370 67.063 252 64 3 55 305 122 355 8.53e-115 348
MS.gene66496.t1 MTR_7g080460 69.636 247 63 3 105 342 250 493 1.34e-113 350
MS.gene66496.t1 MTR_2g098180 64.151 265 67 5 55 314 129 370 1.32e-111 339
MS.gene66496.t1 MTR_8g068510 63.713 237 79 4 77 310 91 323 1.70e-100 306
MS.gene66496.t1 MTR_5g031880 59.441 286 107 5 34 314 139 420 1.24e-98 305
MS.gene66496.t1 MTR_4g130270 71.006 169 49 0 113 281 46 214 9.54e-85 265
MS.gene66496.t1 MTR_7g009410 63.441 186 64 2 96 281 48 229 1.29e-77 247
MS.gene66496.t1 MTR_2g460730 62.376 202 63 3 81 281 22 211 3.54e-75 240
MS.gene66496.t1 MTR_8g044070 49.281 278 107 6 81 350 15 266 4.42e-74 239
MS.gene66496.t1 MTR_6g011490 55.607 214 83 2 77 281 15 225 1.90e-72 233
MS.gene66496.t1 MTR_4g007770 68.639 169 50 1 113 281 35 200 5.32e-72 231
MS.gene66496.t1 MTR_8g468920 57.009 214 75 3 82 281 23 233 4.51e-70 228
MS.gene66496.t1 MTR_8g044040 62.921 178 62 2 113 290 55 228 2.29e-69 226
MS.gene66496.t1 MTR_4g094868 54.167 168 66 3 117 284 176 332 1.12e-44 164
MS.gene66496.t1 MTR_4g094868 54.167 168 66 3 117 284 176 332 1.17e-44 164
MS.gene66496.t1 MTR_5g016810 54.167 168 66 3 117 284 152 308 3.27e-44 162
MS.gene66496.t1 MTR_2g093060 48.925 186 84 3 99 284 116 290 2.05e-43 159
MS.gene66496.t1 MTR_2g093060 48.925 186 84 3 99 284 116 290 2.26e-43 159
MS.gene66496.t1 MTR_7g100590 51.786 168 70 3 117 284 139 295 3.25e-43 159
MS.gene66496.t1 MTR_4g061200 47.619 189 88 3 96 284 110 287 1.88e-42 155
MS.gene66496.t1 MTR_5g016810 52.874 174 65 4 117 284 152 314 2.67e-42 157
MS.gene66496.t1 MTR_4g061200 50.595 168 72 3 117 284 131 287 9.58e-42 154
MS.gene66496.t1 MTR_7g091390 63.077 130 40 2 112 241 55 176 4.74e-40 149
MS.gene66496.t1 MTR_4g094868 55.474 137 60 1 148 284 41 176 1.18e-36 138
MS.gene66496.t1 MTR_2g093060 45.161 186 76 4 99 284 116 275 8.12e-35 135
MS.gene66496.t1 MTR_4g061200 43.915 189 80 4 96 284 110 272 5.86e-34 131
MS.gene66496.t1 MTR_4g061200 46.429 168 64 4 117 284 131 272 2.60e-33 131
MS.gene66496.t1 MTR_7g061190 50.000 136 67 1 149 284 3 137 7.85e-32 119
MS.gene66496.t1 MTR_7g091390 63.736 91 28 1 151 241 3 88 3.58e-23 100
MS.gene66496.t1 MTR_1g049140 41.667 144 73 3 93 236 113 245 1.17e-21 94.4
MS.gene66496.t1 MTR_1g049140 41.667 144 73 3 93 236 113 245 3.89e-21 95.1
MS.gene66496.t1 MTR_1g049140 41.667 144 73 3 93 236 113 245 9.42e-21 93.6
MS.gene66496.t1 MTR_3g090510 44.340 106 58 1 155 260 163 267 4.57e-17 83.2
MS.gene66496.t1 MTR_7g060560 42.453 106 59 2 155 260 156 259 4.66e-14 73.9
MS.gene66496.t1 MTR_1g028560 49.315 73 36 1 204 276 99 170 4.40e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66496.t1 AT4G37750 67.752 307 64 6 53 324 191 497 9.48e-136 402
MS.gene66496.t1 AT1G72570 70.565 248 71 2 58 304 164 410 1.34e-123 366
MS.gene66496.t1 AT5G57390 65.975 241 82 0 97 337 65 305 8.91e-117 350
MS.gene66496.t1 AT1G51190 59.396 298 97 4 20 316 116 390 1.41e-116 353
MS.gene66496.t1 AT5G57390 65.975 241 82 0 97 337 183 423 6.68e-116 352
MS.gene66496.t1 AT5G57390 30.496 141 66 3 176 284 136 276 9.31e-11 64.3
MS.gene66496.t1 AT3G20840 65.399 263 81 4 55 314 126 381 5.08e-114 347
MS.gene66496.t1 AT5G17430 66.929 254 70 2 105 358 136 375 5.80e-114 345
MS.gene66496.t1 AT5G17430 66.929 254 70 2 105 358 198 437 8.55e-114 347
MS.gene66496.t1 AT5G65510 69.484 213 65 0 90 302 146 358 4.53e-98 302
MS.gene66496.t1 AT5G65510 69.484 213 65 0 90 302 204 416 5.97e-98 303
MS.gene66496.t1 AT5G65510 69.484 213 65 0 90 302 204 416 5.97e-98 303
MS.gene66496.t1 AT5G10510 71.429 210 59 1 103 312 216 424 1.85e-94 296
MS.gene66496.t1 AT5G10510 71.429 210 59 1 103 312 216 424 1.85e-94 296
MS.gene66496.t1 AT5G10510 68.161 223 70 1 90 312 241 462 2.79e-94 296
MS.gene66496.t1 AT5G10510 68.161 223 70 1 90 312 241 462 2.79e-94 296
MS.gene66496.t1 AT5G10510 71.429 210 59 1 103 312 239 447 2.99e-94 296
MS.gene66496.t1 AT5G10510 70.000 210 59 2 103 312 216 421 6.26e-90 284
MS.gene66496.t1 AT5G10510 61.317 243 73 2 90 312 241 482 5.46e-87 278
MS.gene66496.t1 AT5G65510 72.671 161 44 0 90 250 146 306 1.01e-83 260
MS.gene66496.t1 AT5G65510 44.000 75 34 1 218 284 172 246 6.85e-11 63.9
MS.gene66496.t1 AT3G54320 61.809 199 71 1 88 281 31 229 3.86e-73 237
MS.gene66496.t1 AT3G54320 65.922 179 61 0 103 281 51 229 6.66e-73 236
MS.gene66496.t1 AT1G79700 57.273 220 91 1 113 329 48 267 2.82e-68 221
MS.gene66496.t1 AT1G16060 61.111 198 67 1 84 281 35 222 7.23e-66 215
MS.gene66496.t1 AT1G79700 54.545 220 87 2 113 329 48 257 1.05e-60 201
MS.gene66496.t1 AT3G54320 69.466 131 40 0 151 281 33 163 1.62e-52 181
MS.gene66496.t1 AT3G54320 69.466 131 40 0 151 281 33 163 1.62e-52 181
MS.gene66496.t1 AT1G79700 53.846 182 81 1 151 329 10 191 1.38e-45 159
MS.gene66496.t1 AT5G67180 43.830 235 111 4 61 295 50 263 1.48e-45 160
MS.gene66496.t1 AT5G67180 43.348 233 111 4 61 293 50 261 3.24e-45 159
MS.gene66496.t1 AT5G67180 43.830 235 111 4 61 295 50 263 4.81e-45 161
MS.gene66496.t1 AT4G36920 53.571 168 67 3 117 284 131 287 6.15e-45 162
MS.gene66496.t1 AT4G36920 53.571 168 67 3 117 284 131 287 6.15e-45 162
MS.gene66496.t1 AT2G41710 63.636 132 43 1 110 241 63 189 6.16e-44 160
MS.gene66496.t1 AT2G41710 63.636 132 43 1 110 241 63 189 1.07e-43 160
MS.gene66496.t1 AT1G79700 52.778 180 82 1 153 329 6 185 1.40e-43 153
MS.gene66496.t1 AT1G16060 66.165 133 45 0 149 281 20 152 7.92e-43 152
MS.gene66496.t1 AT2G28550 50.575 174 75 3 117 290 153 315 4.49e-42 155
MS.gene66496.t1 AT2G41710 61.314 137 43 2 110 241 63 194 1.85e-41 153
MS.gene66496.t1 AT2G41710 61.983 121 41 1 121 241 109 224 1.79e-37 143
MS.gene66496.t1 AT5G67180 41.089 202 98 4 61 262 50 230 6.01e-34 128
MS.gene66496.t1 AT2G28550 46.552 174 67 4 117 290 153 300 1.20e-33 132
MS.gene66496.t1 AT2G28550 39.594 197 97 5 117 302 153 338 1.34e-33 129
MS.gene66496.t1 AT1G16060 69.318 88 27 0 194 281 1 88 6.49e-32 121
MS.gene66496.t1 AT1G16060 69.318 88 27 0 194 281 1 88 6.49e-32 121
MS.gene66496.t1 AT1G16060 69.318 88 27 0 194 281 1 88 6.49e-32 121
MS.gene66496.t1 AT1G16060 69.318 88 27 0 194 281 1 88 6.49e-32 121
MS.gene66496.t1 AT3G54320 69.318 88 27 0 194 281 1 88 1.94e-30 119
MS.gene66496.t1 AT2G28550 49.606 127 53 3 117 243 153 268 4.33e-29 115
MS.gene66496.t1 AT2G28550 49.606 127 53 3 117 243 153 268 4.33e-29 115
MS.gene66496.t1 AT2G39250 44.248 113 53 2 117 229 108 210 1.25e-25 105
MS.gene66496.t1 AT2G39250 39.216 102 56 3 189 286 76 175 4.75e-11 63.2
MS.gene66496.t1 AT2G39250 44.248 113 53 2 117 229 108 210 3.41e-25 106
MS.gene66496.t1 AT2G39250 39.216 102 56 3 189 286 76 175 5.17e-11 64.3
MS.gene66496.t1 AT2G28550 44.286 140 62 2 151 290 11 134 5.98e-23 99.0
MS.gene66496.t1 AT5G60120 48.062 129 56 3 114 242 157 274 6.73e-23 101
MS.gene66496.t1 AT5G60120 48.062 129 56 3 114 242 157 274 6.75e-23 101
MS.gene66496.t1 AT5G60120 48.062 129 56 3 114 242 157 274 7.59e-23 100
MS.gene66496.t1 AT5G60120 48.062 129 56 3 114 242 157 274 7.59e-23 100
MS.gene66496.t1 AT5G60120 48.062 129 56 3 114 242 157 274 7.59e-23 100
MS.gene66496.t1 AT5G60120 48.062 129 56 3 114 242 157 274 1.03e-22 101
MS.gene66496.t1 AT3G54990 48.598 107 45 2 117 223 122 218 1.31e-21 94.4
MS.gene66496.t1 AT3G54990 48.598 107 45 2 117 223 122 218 4.24e-21 94.7
MS.gene66496.t1 AT1G16060 75.439 57 14 0 225 281 10 66 4.15e-18 82.8

Find 95 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGTACATCACAGTTTATT+TGG 0.185891 1.4:+5365140 MS.gene66496:intron
TTTGATCCTGTTGGAGGTTT+TGG 0.215949 1.4:-5367020 None:intergenic
GTAGATATGAAGCACATTTA+TGG 0.231221 1.4:+5364606 MS.gene66496:CDS
CCAAATCAGATTTCAGCTTC+TGG 0.236049 1.4:+5363850 MS.gene66496:CDS
ATCTTGCTGCTCTCAAATAT+TGG 0.242252 1.4:+5365308 MS.gene66496:CDS
TGACCAACAATGAAAATAAT+TGG 0.248259 1.4:+5366748 MS.gene66496:CDS
TAGGCAGAGTTGCAGGAAAT+AGG 0.281271 1.4:+5366177 MS.gene66496:CDS
CCAGAAGCTGAAATCTGATT+TGG 0.290373 1.4:-5363850 None:intergenic
GGTTCTGTGGGAACAGTTAA+TGG 0.296492 1.4:+5363760 MS.gene66496:CDS
AGTCCTATTGCTACTAATAC+TGG 0.308126 1.4:+5367050 MS.gene66496:CDS
CGAAGTTTGTGACCGCATTT+AGG 0.314036 1.4:-5366554 None:intergenic
TCTTGCTGCTCTCAAATATT+GGG 0.326373 1.4:+5365309 MS.gene66496:CDS
AGGAAAACTATTAGCACATT+TGG 0.344575 1.4:+5363943 MS.gene66496:CDS
TGTTGTCTATCAGGCATAGA+TGG 0.363633 1.4:+5364579 MS.gene66496:intron
ATGAGTCCTTATCATCTTGT+TGG 0.365906 1.4:-5366907 None:intergenic
TTGTACATCACAGTTTATTT+GGG 0.368466 1.4:+5365141 MS.gene66496:intron
ACTACTTGACTATGTATGAT+TGG 0.378303 1.4:-5366717 None:intergenic
AAGAAATGAATAACATGAAT+AGG 0.381297 1.4:+5365580 MS.gene66496:CDS
GCAAGGATAGGCAGAGTTGC+AGG 0.383894 1.4:+5366170 MS.gene66496:CDS
AACATTGTTGTTACACTCTT+CGG 0.387750 1.4:-5366685 None:intergenic
TACTAAAGGTGGTTATGATA+TGG 0.390901 1.4:+5365261 MS.gene66496:intron
GGAAATAGGGACCTTTATCT+TGG 0.391409 1.4:+5366191 MS.gene66496:CDS
TAGATATGAAGCACATTTAT+GGG 0.394942 1.4:+5364607 MS.gene66496:CDS
GCTATAAATACTTTCTTCCT+TGG 0.397257 1.4:-5363650 None:intergenic
TACTAAATGTTCCAAGATAA+AGG 0.401696 1.4:-5366202 None:intergenic
TTGCTACTAATACTGGATCT+TGG 0.406109 1.4:+5367057 MS.gene66496:CDS
TCTAGCAACACCTTGCTTGC+TGG 0.407556 1.4:+5366609 MS.gene66496:CDS
AATAATAGTGTTGGTAGTAT+TGG 0.414510 1.4:+5363730 MS.gene66496:CDS
AGGCAGAGTTGCAGGAAATA+GGG 0.422847 1.4:+5366178 MS.gene66496:CDS
CAATCCCAATGATATCTTGT+AGG 0.432211 1.4:-5366842 None:intergenic
ATGTCCCTACAAGATATCAT+TGG 0.434292 1.4:+5366837 MS.gene66496:CDS
TCACTCCAAGCCGCGAAAAC+CGG 0.445495 1.4:-5367116 None:intergenic
GAGAAGTTTATATGCGTTGA+AGG 0.446560 1.4:-5365334 None:intergenic
TTCAACGCATATAAACTTCT+CGG 0.459903 1.4:+5365336 MS.gene66496:CDS
GATCCAGTATTAGTAGCAAT+AGG 0.467097 1.4:-5367053 None:intergenic
ATTCTTCCAACAAGATGATA+AGG 0.467507 1.4:+5366901 MS.gene66496:CDS
GGCACCACCAGCATGGTAGA+TGG 0.470143 1.4:+5366144 MS.gene66496:intron
GTGGGAACAGTTAATGGTTG+TGG 0.486228 1.4:+5363766 MS.gene66496:CDS
TGTCCCTACAAGATATCATT+GGG 0.488842 1.4:+5366838 MS.gene66496:CDS
AGGAGGATCTAGCCAAGTTA+TGG 0.491829 1.4:+5366872 MS.gene66496:CDS
ATGTATTTGACTCTTGTTGT+GGG 0.492523 1.4:-5366779 None:intergenic
CTAAGCCTTTCTATGAGTCC+TGG 0.494679 1.4:+5363802 MS.gene66496:CDS
GTTGGTAGTATTGGAGATGA+TGG 0.498430 1.4:+5363739 MS.gene66496:CDS
AGGGGTGCTTCAATGTATAG+AGG 0.507777 1.4:+5366026 MS.gene66496:CDS
AATCCCAATGATATCTTGTA+GGG 0.509915 1.4:-5366841 None:intergenic
AATGAATAACATGAATAGGC+AGG 0.510516 1.4:+5365584 MS.gene66496:CDS
TTGCTTGCCATCTACCATGC+TGG 0.513656 1.4:-5366151 None:intergenic
CATGTATTTGACTCTTGTTG+TGG 0.518880 1.4:-5366780 None:intergenic
CAAAGAACTTCTCAGTATAG+AGG 0.520883 1.4:+5363967 MS.gene66496:CDS
AAGAGAGGACATGCTAAGGT+TGG 0.521241 1.4:+5363901 MS.gene66496:CDS
CTCAGTATAGAGGAGTTACA+AGG 0.524809 1.4:+5363977 MS.gene66496:CDS
AAGGAAGGGCAAACAAGGAA+AGG 0.527415 1.4:+5364644 MS.gene66496:CDS
TGACTAGTTTAAGTAGCTCA+AGG 0.531594 1.4:+5366952 MS.gene66496:CDS
AGCTTGTTCACCAGCAAGCA+AGG 0.538209 1.4:-5366619 None:intergenic
TTCAGGCACTCAAGAGGAAG+CGG 0.542228 1.4:+5366494 MS.gene66496:intron
TATTGGAGATGATGGTTCTG+TGG 0.544033 1.4:+5363747 MS.gene66496:CDS
ACACAGCTTGATTGAGAACC+AGG 0.546355 1.4:-5363820 None:intergenic
GCAAGAAGGAAGGGCAAACA+AGG 0.547287 1.4:+5364639 MS.gene66496:CDS
ATGGGATAACAGTTGCAAGA+AGG 0.549719 1.4:+5364625 MS.gene66496:CDS
ATTGGGATTGATTCAGTAGG+AGG 0.550416 1.4:+5366855 MS.gene66496:CDS
AAGAATCATCTACCATAACT+TGG 0.553088 1.4:-5366884 None:intergenic
TGTATTTGACTCTTGTTGTG+GGG 0.559834 1.4:-5366778 None:intergenic
GACAGAAGCAACCTGCTCAT+AGG 0.560917 1.4:+5363923 MS.gene66496:CDS
TAAATGTGCTTCATATCTAC+CGG 0.561083 1.4:-5364603 None:intergenic
AGCCCTGACAACAAAAGTAC+TGG 0.562924 1.4:+5366981 MS.gene66496:CDS
GAGAACCAGGACTCATAGAA+AGG 0.563571 1.4:-5363807 None:intergenic
GGGGTGCTTCAATGTATAGA+GGG 0.563963 1.4:+5366027 MS.gene66496:CDS
TTGTGACCGCATTTAGGCCA+CGG 0.569031 1.4:-5366548 None:intergenic
GGTAGATGGCAAGCAAGGAT+AGG 0.573158 1.4:+5366158 MS.gene66496:CDS
TCTATCAGGCATAGATGGAC+CGG 0.575721 1.4:+5364584 MS.gene66496:intron
CATCAAGTGAATAATAGTGT+TGG 0.579792 1.4:+5363721 MS.gene66496:CDS
CAATGTATAGAGGGGTGACA+AGG 0.582211 1.4:+5366036 MS.gene66496:CDS
GATAACAGTTGCAAGAAGGA+AGG 0.582613 1.4:+5364629 MS.gene66496:CDS
AATATGTTGCTCATTTGAGA+AGG 0.582799 1.4:+5365607 MS.gene66496:CDS
AGCATGGTAGATGGCAAGCA+AGG 0.586051 1.4:+5366153 MS.gene66496:CDS
TGCTCTAAAGAATAATCTCT+AGG 0.594882 1.4:-5363691 None:intergenic
GACTAGTTTAAGTAGCTCAA+GGG 0.598107 1.4:+5366953 MS.gene66496:CDS
ATTAAATTCAGGCACTCAAG+AGG 0.602172 1.4:+5366488 MS.gene66496:intron
TTGGTTTGCAGAAAGAGTAG+TGG 0.602923 1.4:+5365996 MS.gene66496:intron
CATTGAGATAGCACTAGCTG+AGG 0.605417 1.4:-5367084 None:intergenic
TAGGCCACGGAATTTGATTG+CGG 0.612186 1.4:-5366535 None:intergenic
CTTGCTGCTCTCAAATATTG+GGG 0.621666 1.4:+5365310 MS.gene66496:CDS
ATAACAGTTGCAAGAAGGAA+GGG 0.625126 1.4:+5364630 MS.gene66496:CDS
CTTGCCATCTACCATGCTGG+TGG 0.630256 1.4:-5366148 None:intergenic
ATATGGAAGAGAAAGCTGCA+AGG 0.633701 1.4:+5365278 MS.gene66496:CDS
ATTGGAGATGATGGTTCTGT+GGG 0.634214 1.4:+5363748 MS.gene66496:CDS
TATGGAAGAGAAAGCTGCAA+GGG 0.638891 1.4:+5365279 MS.gene66496:CDS
ATCATTGGGATTGATTCAGT+AGG 0.645337 1.4:+5366852 MS.gene66496:CDS
CAAACAAGGAAAGGAAGACA+AGG 0.651967 1.4:+5364653 MS.gene66496:CDS
GGAAGAAGAAGAACAAACCA+AGG 0.657484 1.4:+5363633 MS.gene66496:CDS
CAAATTCCGTGGCCTAAATG+CGG 0.663896 1.4:+5366542 MS.gene66496:CDS
TTATGCAGGCACCACCAGCA+TGG 0.670111 1.4:+5366137 MS.gene66496:intron
ATTGAGATAGCACTAGCTGA+GGG 0.680349 1.4:-5367083 None:intergenic
GTAGCCGCAATCAAATTCCG+TGG 0.693649 1.4:+5366531 MS.gene66496:CDS
GGGTGCTTCAATGTATAGAG+GGG 0.696881 1.4:+5366028 MS.gene66496:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTAAAAAAATAAT+CGG - chr1.4:5365468-5365487 None:intergenic 0.0%
!!! CATTTTTAAATAATCTATAA+AGG - chr1.4:5366090-5366109 None:intergenic 10.0%
!!! GTAAAATATTTAAGAATTTT+TGG - chr1.4:5364686-5364705 None:intergenic 10.0%
!! AAAAAATAGATCTATGAAAA+AGG - chr1.4:5365179-5365198 None:intergenic 15.0%
!! ATAAATGTAATTAAATGTGT+CGG - chr1.4:5366383-5366402 None:intergenic 15.0%
!! TTTAATTCGAAAAAATTACT+AGG - chr1.4:5366474-5366493 None:intergenic 15.0%
!!! AATTTTTTCGAATTAAATTC+AGG + chr1.4:5366477-5366496 MS.gene66496:intron 15.0%
!!! ACATGCATTTAATTTTATAT+TGG + chr1.4:5364905-5364924 MS.gene66496:intron 15.0%
!!! CAGAATTTCTAATAAATTTT+TGG - chr1.4:5366809-5366828 None:intergenic 15.0%
!!! GATTTTTTTGCTTATATTTT+AGG + chr1.4:5365009-5365028 MS.gene66496:intron 15.0%
!!! TTTTATTTATTAACATGTGT+GGG - chr1.4:5364338-5364357 None:intergenic 15.0%
!!! TTTTTATTTATTAACATGTG+TGG - chr1.4:5364339-5364358 None:intergenic 15.0%
!!! TTTTTGCTTATAAAAAAAGA+CGG - chr1.4:5364730-5364749 None:intergenic 15.0%
!! AAGAAATGAATAACATGAAT+AGG + chr1.4:5365580-5365599 MS.gene66496:CDS 20.0%
!! CACAATAATAACATAAAAGT+TGG + chr1.4:5364951-5364970 MS.gene66496:intron 20.0%
!! CTAAAAAAGTCCATTATTTA+TGG - chr1.4:5366271-5366290 None:intergenic 20.0%
!! GATGACAAATAATTGAAATA+AGG - chr1.4:5364431-5364450 None:intergenic 20.0%
!! GATGTAAAAATAATTCTCAT+TGG + chr1.4:5364838-5364857 MS.gene66496:intron 20.0%
!! TTAGTCTCTTAGAATAATAA+AGG + chr1.4:5365705-5365724 MS.gene66496:intron 20.0%
!! TTTATTTATTAACATGTGTG+GGG - chr1.4:5364337-5364356 None:intergenic 20.0%
!!! AAATAAGCTCTAATTATTAG+TGG - chr1.4:5364040-5364059 None:intergenic 20.0%
!!! AATAAGCTCTAATTATTAGT+GGG - chr1.4:5364039-5364058 None:intergenic 20.0%
!!! AATGATTTTGTACTAACTTT+AGG + chr1.4:5366106-5366125 MS.gene66496:intron 20.0%
!!! ATTCCAATTATTTTCATTGT+TGG - chr1.4:5366754-5366773 None:intergenic 20.0%
!!! CATAAATAATGGACTTTTTT+AGG + chr1.4:5366269-5366288 MS.gene66496:intron 20.0%
!!! CTTTTTACATCTGAAAATAT+TGG + chr1.4:5365049-5365068 MS.gene66496:intron 20.0%
!!! GTTTGTTAAAATGTTACTAA+AGG + chr1.4:5365247-5365266 MS.gene66496:intron 20.0%
!!! TAATATATTGACTTGTTTTG+AGG + chr1.4:5364387-5364406 MS.gene66496:intron 20.0%
!!! TACATGTAAATGCTATTTAT+TGG - chr1.4:5366235-5366254 None:intergenic 20.0%
!!! TTCTCATTGGTTAAAAATTA+TGG + chr1.4:5364851-5364870 MS.gene66496:intron 20.0%
!!! TTTTTGCTTATATTTTAGGA+CGG + chr1.4:5365013-5365032 MS.gene66496:intron 20.0%
! AACAAAGTAATTAGAGTGAA+GGG - chr1.4:5365920-5365939 None:intergenic 25.0%
! ACCATATATATCAGATATAG+TGG - chr1.4:5365219-5365238 None:intergenic 25.0%
! ATTGTACATCACAGTTTATT+TGG + chr1.4:5365140-5365159 MS.gene66496:intron 25.0%
! CCATATATATCAGATATAGT+GGG - chr1.4:5365218-5365237 None:intergenic 25.0%
! CTAATTGCCTTTATTATCTT+TGG + chr1.4:5365529-5365548 MS.gene66496:intron 25.0%
! CTATAAAGGAAAATAGACAT+AGG - chr1.4:5366076-5366095 None:intergenic 25.0%
! TACTAAATGTTCCAAGATAA+AGG - chr1.4:5366205-5366224 None:intergenic 25.0%
! TAGATATGAAGCACATTTAT+GGG + chr1.4:5364607-5364626 MS.gene66496:CDS 25.0%
! TGACCAACAATGAAAATAAT+TGG + chr1.4:5366748-5366767 MS.gene66496:CDS 25.0%
! TGATGAGAAAGTTTCAAAAA+TGG + chr1.4:5364482-5364501 MS.gene66496:intron 25.0%
! TGGTTTATAGAACAAAATAG+AGG - chr1.4:5364084-5364103 None:intergenic 25.0%
! TGTTAAAATGTTACTAAAGG+TGG + chr1.4:5365250-5365269 MS.gene66496:intron 25.0%
! TTATAGCTTCAAAAACTTTG+TGG + chr1.4:5363666-5363685 MS.gene66496:CDS 25.0%
! TTATTTATTAACATGTGTGG+GGG - chr1.4:5364336-5364355 None:intergenic 25.0%
! TTCAACCTTAGTGTTTATAT+CGG + chr1.4:5364167-5364186 MS.gene66496:intron 25.0%
! TTGTACATCACAGTTTATTT+GGG + chr1.4:5365141-5365160 MS.gene66496:intron 25.0%
! TTTAAAAAAATAATCGGGCA+AGG - chr1.4:5365462-5365481 None:intergenic 25.0%
!! AAAAAATTACTAGGCGTTTT+AGG - chr1.4:5366465-5366484 None:intergenic 25.0%
!! ATATGATGATACTAAGCTTT+TGG + chr1.4:5365973-5365992 MS.gene66496:intron 25.0%
!! TGTAAATGCTATTTATTGGA+CGG - chr1.4:5366231-5366250 None:intergenic 25.0%
!! TTTAGGTTTAAATGTTATGC+AGG + chr1.4:5366123-5366142 MS.gene66496:intron 25.0%
!!! AATAATAGTGTTGGTAGTAT+TGG + chr1.4:5363730-5363749 MS.gene66496:CDS 25.0%
!!! ACTTACTAACTTGCTATTAT+TGG + chr1.4:5365637-5365656 MS.gene66496:intron 25.0%
!!! ATAATTTTTTGTGTTCTCCT+TGG + chr1.4:5364798-5364817 MS.gene66496:intron 25.0%
!!! GACTTTTTTAGGTAATAACT+TGG + chr1.4:5366280-5366299 MS.gene66496:intron 25.0%
!!! TCTATAAACCAAAGTTGATA+TGG + chr1.4:5364093-5364112 MS.gene66496:intron 25.0%
AACAACTAAAACAATTGCCA+AGG - chr1.4:5364523-5364542 None:intergenic 30.0%
AACCAATACTTAGTGATTTG+AGG + chr1.4:5364774-5364793 MS.gene66496:intron 30.0%
AAGAATCATCTACCATAACT+TGG - chr1.4:5366887-5366906 None:intergenic 30.0%
AAGTAAAGACTAAGTTGTCT+CGG + chr1.4:5365808-5365827 MS.gene66496:intron 30.0%
AATATGTTGCTCATTTGAGA+AGG + chr1.4:5365607-5365626 MS.gene66496:CDS 30.0%
AATCCCAATGATATCTTGTA+GGG - chr1.4:5366844-5366863 None:intergenic 30.0%
AATGAATAACATGAATAGGC+AGG + chr1.4:5365584-5365603 MS.gene66496:CDS 30.0%
ACTACTTGACTATGTATGAT+TGG - chr1.4:5366720-5366739 None:intergenic 30.0%
AGACAGTAATGAAAAAACTG+AGG + chr1.4:5366662-5366681 MS.gene66496:CDS 30.0%
AGGAAAACTATTAGCACATT+TGG + chr1.4:5363943-5363962 MS.gene66496:CDS 30.0%
ATAAAGGCAATTAGACTCTA+AGG - chr1.4:5365523-5365542 None:intergenic 30.0%
ATTAAATCTGGATCACACAT+TGG + chr1.4:5364223-5364242 MS.gene66496:intron 30.0%
ATTCTTCCAACAAGATGATA+AGG + chr1.4:5366901-5366920 MS.gene66496:CDS 30.0%
CAACAAAGTAATTAGAGTGA+AGG - chr1.4:5365921-5365940 None:intergenic 30.0%
CAATCTGCCAAAGATAATAA+AGG - chr1.4:5365539-5365558 None:intergenic 30.0%
CATCAAGTGAATAATAGTGT+TGG + chr1.4:5363721-5363740 MS.gene66496:CDS 30.0%
CATTACACAGCCATAAATAA+TGG + chr1.4:5366258-5366277 MS.gene66496:intron 30.0%
CCCACTATATCTGATATATA+TGG + chr1.4:5365215-5365234 MS.gene66496:intron 30.0%
GAATTCGAATGGTTTAACTA+TGG - chr1.4:5364462-5364481 None:intergenic 30.0%
GCTATAAATACTTTCTTCCT+TGG - chr1.4:5363653-5363672 None:intergenic 30.0%
GTAGATATGAAGCACATTTA+TGG + chr1.4:5364606-5364625 MS.gene66496:CDS 30.0%
TAAATGTGCTTCATATCTAC+CGG - chr1.4:5364606-5364625 None:intergenic 30.0%
TACCTCAAATCACTAAGTAT+TGG - chr1.4:5364779-5364798 None:intergenic 30.0%
TACTAAAGGTGGTTATGATA+TGG + chr1.4:5365261-5365280 MS.gene66496:intron 30.0%
TACTTGTGTGACATTAAATC+TGG + chr1.4:5364211-5364230 MS.gene66496:intron 30.0%
TATTTATTAACATGTGTGGG+GGG - chr1.4:5364335-5364354 None:intergenic 30.0%
TCAACCTTAGTGTTTATATC+GGG + chr1.4:5364168-5364187 MS.gene66496:intron 30.0%
TGCTTATAAAAAAAGACGGA+GGG - chr1.4:5364726-5364745 None:intergenic 30.0%
TTAAATCTGGATCACACATT+GGG + chr1.4:5364224-5364243 MS.gene66496:intron 30.0%
TTCAACGCATATAAACTTCT+CGG + chr1.4:5365336-5365355 MS.gene66496:CDS 30.0%
TTGCTTATAAAAAAAGACGG+AGG - chr1.4:5364727-5364746 None:intergenic 30.0%
TTGTGATACCCAAGAAAAAA+TGG - chr1.4:5365894-5365913 None:intergenic 30.0%
TTTCCATGAAACTTATTCCA+AGG - chr1.4:5364818-5364837 None:intergenic 30.0%
! AAATCGAGCGAAATTTTTAC+TGG + chr1.4:5365488-5365507 MS.gene66496:intron 30.0%
! AACATTGTTGTTACACTCTT+CGG - chr1.4:5366688-5366707 None:intergenic 30.0%
! ATATCAGATATAGTGGGAAT+AGG - chr1.4:5365212-5365231 None:intergenic 30.0%
! ATGTATTTGACTCTTGTTGT+GGG - chr1.4:5366782-5366801 None:intergenic 30.0%
! TATCAGATATAGTGGGAATA+GGG - chr1.4:5365211-5365230 None:intergenic 30.0%
! TATCTCAATGTCTCATTTTC+CGG + chr1.4:5367097-5367116 MS.gene66496:CDS 30.0%
!! AAAGAGTAGTGGTTTTTCAA+GGG + chr1.4:5366007-5366026 MS.gene66496:CDS 30.0%
!! TGCTCTAAAGAATAATCTCT+AGG - chr1.4:5363694-5363713 None:intergenic 30.0%
!! TTGTTTGTTTGTTGTCTATC+AGG + chr1.4:5364570-5364589 MS.gene66496:intron 30.0%
!!! AGATGATGCATTTTTTCTCA+AGG - chr1.4:5365682-5365701 None:intergenic 30.0%
!!! CAAAGTCTCATCAACTTTTT+TGG + chr1.4:5366339-5366358 MS.gene66496:intron 30.0%
!!! GGTTTTAATTTTATGAGCCT+TGG + chr1.4:5364503-5364522 MS.gene66496:intron 30.0%
!!! GTTTTGGAAAAAGCATTGTA+GGG - chr1.4:5367007-5367026 None:intergenic 30.0%
!!! TGTGTTAGCCATTTTTTCTT+GGG + chr1.4:5365883-5365902 MS.gene66496:intron 30.0%
!!! TTGTGTTAGCCATTTTTTCT+TGG + chr1.4:5365882-5365901 MS.gene66496:intron 30.0%
AGATCAAACTAGGGTTGAAA+CGG + chr1.4:5364144-5364163 MS.gene66496:intron 35.0%
AGTCCTATTGCTACTAATAC+TGG + chr1.4:5367050-5367069 MS.gene66496:CDS 35.0%
ATAACAGTTGCAAGAAGGAA+GGG + chr1.4:5364630-5364649 MS.gene66496:CDS 35.0%
ATCTTGCTGCTCTCAAATAT+TGG + chr1.4:5365308-5365327 MS.gene66496:CDS 35.0%
ATGAGTCCTTATCATCTTGT+TGG - chr1.4:5366910-5366929 None:intergenic 35.0%
ATGTCCCTACAAGATATCAT+TGG + chr1.4:5366837-5366856 MS.gene66496:CDS 35.0%
ATTAAATTCAGGCACTCAAG+AGG + chr1.4:5366488-5366507 MS.gene66496:intron 35.0%
ATTGTCATTGTCATTGCATC+TGG - chr1.4:5364273-5364292 None:intergenic 35.0%
ATTTGAATGACCAAGTGCTA+AGG - chr1.4:5366318-5366337 None:intergenic 35.0%
CAAAGAACTTCTCAGTATAG+AGG + chr1.4:5363967-5363986 MS.gene66496:CDS 35.0%
CAATCCCAATGATATCTTGT+AGG - chr1.4:5366845-5366864 None:intergenic 35.0%
CATGTATTTGACTCTTGTTG+TGG - chr1.4:5366783-5366802 None:intergenic 35.0%
CTTTCTCATCAGAATTCGAA+TGG - chr1.4:5364473-5364492 None:intergenic 35.0%
GACAGTTGCAAAATGGTTAT+CGG + chr1.4:5365409-5365428 MS.gene66496:intron 35.0%
GAGAAGTTTATATGCGTTGA+AGG - chr1.4:5365337-5365356 None:intergenic 35.0%
GATCCAGTATTAGTAGCAAT+AGG - chr1.4:5367056-5367075 None:intergenic 35.0%
GTTGACACAGTTCAGAATAA+TGG - chr1.4:5365076-5365095 None:intergenic 35.0%
GTTGTTGAAGCTAAAAAGAG+AGG + chr1.4:5363886-5363905 MS.gene66496:CDS 35.0%
TAAAAAGAGAGGACATGCTA+AGG + chr1.4:5363897-5363916 MS.gene66496:CDS 35.0%
TCCCAACTTATTTGTCTCTA+GGG - chr1.4:5365743-5365762 None:intergenic 35.0%
TCCCTAGAGACAAATAAGTT+GGG + chr1.4:5365739-5365758 MS.gene66496:intron 35.0%
TCTCCTTGGAATAAGTTTCA+TGG + chr1.4:5364812-5364831 MS.gene66496:intron 35.0%
TCTTGCTGCTCTCAAATATT+GGG + chr1.4:5365309-5365328 MS.gene66496:CDS 35.0%
TGGTTTAACTATGGTCGAAT+CGG - chr1.4:5364453-5364472 None:intergenic 35.0%
TGTCCCTACAAGATATCATT+GGG + chr1.4:5366838-5366857 MS.gene66496:CDS 35.0%
TTAAGAAGATCCTTAGCACT+TGG + chr1.4:5366305-5366324 MS.gene66496:intron 35.0%
TTAGCAACGAGATCAAACTA+GGG + chr1.4:5364135-5364154 MS.gene66496:intron 35.0%
TTGCTACTAATACTGGATCT+TGG + chr1.4:5367057-5367076 MS.gene66496:CDS 35.0%
TTGTCATTGTCATTGCATCT+GGG - chr1.4:5364272-5364291 None:intergenic 35.0%
TTTAGCAACGAGATCAAACT+AGG + chr1.4:5364134-5364153 MS.gene66496:intron 35.0%
! AAAGTTTTTGATCCTGTTGG+AGG - chr1.4:5367029-5367048 None:intergenic 35.0%
! ATCATTGGGATTGATTCAGT+AGG + chr1.4:5366852-5366871 MS.gene66496:CDS 35.0%
! CTAATAGTTTTCCTATGAGC+AGG - chr1.4:5363937-5363956 None:intergenic 35.0%
! CTCAAAGTTTTTGATCCTGT+TGG - chr1.4:5367032-5367051 None:intergenic 35.0%
! GAAAGAGTAGTGGTTTTTCA+AGG + chr1.4:5366006-5366025 MS.gene66496:intron 35.0%
! GATGATACTAAGCTTTTGGT+TGG + chr1.4:5365977-5365996 MS.gene66496:intron 35.0%
! TGTATTTGACTCTTGTTGTG+GGG - chr1.4:5366781-5366800 None:intergenic 35.0%
!! AACTTGCTATTATTGGAGTG+AGG + chr1.4:5365644-5365663 MS.gene66496:intron 35.0%
!! GACTAGTTTAAGTAGCTCAA+GGG + chr1.4:5366953-5366972 MS.gene66496:CDS 35.0%
!! GTCTCGGTTTATTTTTCTCA+AGG + chr1.4:5365824-5365843 MS.gene66496:intron 35.0%
!! TCTTTGAGACAGTTGCAAAA+TGG + chr1.4:5365402-5365421 MS.gene66496:intron 35.0%
!! TGACTAGTTTAAGTAGCTCA+AGG + chr1.4:5366952-5366971 MS.gene66496:CDS 35.0%
!!! AAGAGTAGTGGTTTTTCAAG+GGG + chr1.4:5366008-5366027 MS.gene66496:CDS 35.0%
!!! GGTTTTGGAAAAAGCATTGT+AGG - chr1.4:5367008-5367027 None:intergenic 35.0%
!!! TGCTTATATTTTAGGACGGA+GGG + chr1.4:5365017-5365036 MS.gene66496:intron 35.0%
!!! TTGCTTATATTTTAGGACGG+AGG + chr1.4:5365016-5365035 MS.gene66496:intron 35.0%
AAGGCCCGATATAAACACTA+AGG - chr1.4:5364175-5364194 None:intergenic 40.0%
ATATGGAAGAGAAAGCTGCA+AGG + chr1.4:5365278-5365297 MS.gene66496:CDS 40.0%
ATGGCACGGTGACATTAATA+AGG + chr1.4:5364309-5364328 MS.gene66496:intron 40.0%
ATGGGATAACAGTTGCAAGA+AGG + chr1.4:5364625-5364644 MS.gene66496:CDS 40.0%
ATTGAGATAGCACTAGCTGA+GGG - chr1.4:5367086-5367105 None:intergenic 40.0%
CAAACAAGGAAAGGAAGACA+AGG + chr1.4:5364653-5364672 MS.gene66496:CDS 40.0%
CATGTCACATGTTCACATTG+TGG + chr1.4:5365099-5365118 MS.gene66496:intron 40.0%
CCAAATCAGATTTCAGCTTC+TGG + chr1.4:5363850-5363869 MS.gene66496:CDS 40.0%
CCAGAAGCTGAAATCTGATT+TGG - chr1.4:5363853-5363872 None:intergenic 40.0%
CTCAGTATAGAGGAGTTACA+AGG + chr1.4:5363977-5363996 MS.gene66496:CDS 40.0%
CTTGCTGCTCTCAAATATTG+GGG + chr1.4:5365310-5365329 MS.gene66496:CDS 40.0%
GATAACAGTTGCAAGAAGGA+AGG + chr1.4:5364629-5364648 MS.gene66496:CDS 40.0%
GCAATGACAATGACAATGTG+TGG + chr1.4:5364276-5364295 MS.gene66496:intron 40.0%
GGAAATAGGGACCTTTATCT+TGG + chr1.4:5366191-5366210 MS.gene66496:CDS 40.0%
GGAAGAAGAAGAACAAACCA+AGG + chr1.4:5363633-5363652 MS.gene66496:CDS 40.0%
GTCCCAACTTATTTGTCTCT+AGG - chr1.4:5365744-5365763 None:intergenic 40.0%
GTCCCTAGAGACAAATAAGT+TGG + chr1.4:5365738-5365757 MS.gene66496:intron 40.0%
GTGACATTAGATGTGTTGTG+TGG + chr1.4:5364246-5364265 MS.gene66496:intron 40.0%
TATGGAAGAGAAAGCTGCAA+GGG + chr1.4:5365279-5365298 MS.gene66496:CDS 40.0%
TCAGCTAGCCATATCAACTT+TGG - chr1.4:5364104-5364123 None:intergenic 40.0%
TGTTGTCTATCAGGCATAGA+TGG + chr1.4:5364579-5364598 MS.gene66496:intron 40.0%
! AGTTGATATGGCTAGCTGAT+TGG + chr1.4:5364105-5364124 MS.gene66496:intron 40.0%
! ATTGGAGATGATGGTTCTGT+GGG + chr1.4:5363748-5363767 MS.gene66496:CDS 40.0%
! ATTGGGATTGATTCAGTAGG+AGG + chr1.4:5366855-5366874 MS.gene66496:CDS 40.0%
! CTTTTTCCAAAACCTCCAAC+AGG + chr1.4:5367014-5367033 MS.gene66496:CDS 40.0%
! TATTGGAGATGATGGTTCTG+TGG + chr1.4:5363747-5363766 MS.gene66496:CDS 40.0%
! TTTGATCCTGTTGGAGGTTT+TGG - chr1.4:5367023-5367042 None:intergenic 40.0%
! TTTTTCTCAAGGACCACAGT+GGG - chr1.4:5365671-5365690 None:intergenic 40.0%
!! GTTGGTAGTATTGGAGATGA+TGG + chr1.4:5363739-5363758 MS.gene66496:CDS 40.0%
!! TTGGTTTGCAGAAAGAGTAG+TGG + chr1.4:5365996-5366015 MS.gene66496:intron 40.0%
!!! TTTTTTCTCAAGGACCACAG+TGG - chr1.4:5365672-5365691 None:intergenic 40.0%
AAGAGAGGACATGCTAAGGT+TGG + chr1.4:5363901-5363920 MS.gene66496:CDS 45.0%
AAGGAAGGGCAAACAAGGAA+AGG + chr1.4:5364644-5364663 MS.gene66496:CDS 45.0%
ACACAGCTTGATTGAGAACC+AGG - chr1.4:5363823-5363842 None:intergenic 45.0%
AGGAGGATCTAGCCAAGTTA+TGG + chr1.4:5366872-5366891 MS.gene66496:CDS 45.0%
AGGCAGAGTTGCAGGAAATA+GGG + chr1.4:5366178-5366197 MS.gene66496:CDS 45.0%
CAAATTCCGTGGCCTAAATG+CGG + chr1.4:5366542-5366561 MS.gene66496:CDS 45.0%
CAATGTATAGAGGGGTGACA+AGG + chr1.4:5366036-5366055 MS.gene66496:CDS 45.0%
CATTGAGATAGCACTAGCTG+AGG - chr1.4:5367087-5367106 None:intergenic 45.0%
CGAAGTTTGTGACCGCATTT+AGG - chr1.4:5366557-5366576 None:intergenic 45.0%
CGGTATGTTTCACGACATAG+TGG + chr1.4:5365356-5365375 MS.gene66496:intron 45.0%
CTAAGCCTTTCTATGAGTCC+TGG + chr1.4:5363802-5363821 MS.gene66496:CDS 45.0%
GAGAACCAGGACTCATAGAA+AGG - chr1.4:5363810-5363829 None:intergenic 45.0%
GGGTGCTTCAATGTATAGAG+GGG + chr1.4:5366028-5366047 MS.gene66496:CDS 45.0%
GGTTCTGTGGGAACAGTTAA+TGG + chr1.4:5363760-5363779 MS.gene66496:CDS 45.0%
GTGGGAACAGTTAATGGTTG+TGG + chr1.4:5363766-5363785 MS.gene66496:CDS 45.0%
TAGGCAGAGTTGCAGGAAAT+AGG + chr1.4:5366177-5366196 MS.gene66496:CDS 45.0%
TAGGCCACGGAATTTGATTG+CGG - chr1.4:5366538-5366557 None:intergenic 45.0%
TCTATCAGGCATAGATGGAC+CGG + chr1.4:5364584-5364603 MS.gene66496:intron 45.0%
TGTTTATATCGGGCCTTACC+TGG + chr1.4:5364178-5364197 MS.gene66496:intron 45.0%
! AGCCCTGACAACAAAAGTAC+TGG + chr1.4:5366981-5367000 MS.gene66496:CDS 45.0%
! GGGGTGCTTCAATGTATAGA+GGG + chr1.4:5366027-5366046 MS.gene66496:CDS 45.0%
! GTCTCATTTTCCGGTTTTCG+CGG + chr1.4:5367106-5367125 MS.gene66496:CDS 45.0%
! TGTTCGTGTCTGTCTCGTTT+TGG + chr1.4:5366419-5366438 MS.gene66496:intron 45.0%
!! AGGGGTGCTTCAATGTATAG+AGG + chr1.4:5366026-5366045 MS.gene66496:CDS 45.0%
!! GGCCAGTACTTTTGTTGTCA+GGG - chr1.4:5366986-5367005 None:intergenic 45.0%
!! TTTAATTACATTTATTATAA+TGG + chr1.4:5366388-5366407 MS.gene66496:intron 5.0%
!!! TTTTTTTTAAAAAAATAATC+GGG - chr1.4:5365467-5365486 None:intergenic 5.0%
AATGTGTGGCCCAGATGCAA+TGG + chr1.4:5364290-5364309 MS.gene66496:intron 50.0%
AGCATGGTAGATGGCAAGCA+AGG + chr1.4:5366153-5366172 MS.gene66496:CDS 50.0%
CACAAGTATTTCCCTTCGCC+AGG - chr1.4:5364199-5364218 None:intergenic 50.0%
GACAGAAGCAACCTGCTCAT+AGG + chr1.4:5363923-5363942 MS.gene66496:CDS 50.0%
GCAAGAAGGAAGGGCAAACA+AGG + chr1.4:5364639-5364658 MS.gene66496:CDS 50.0%
GGTAGATGGCAAGCAAGGAT+AGG + chr1.4:5366158-5366177 MS.gene66496:CDS 50.0%
GTAGCCGCAATCAAATTCCG+TGG + chr1.4:5366531-5366550 MS.gene66496:CDS 50.0%
GTATTTCCCTTCGCCAGGTA+AGG - chr1.4:5364194-5364213 None:intergenic 50.0%
TCTAGCAACACCTTGCTTGC+TGG + chr1.4:5366609-5366628 MS.gene66496:CDS 50.0%
TTCAGGCACTCAAGAGGAAG+CGG + chr1.4:5366494-5366513 MS.gene66496:intron 50.0%
TTGCTTGCCATCTACCATGC+TGG - chr1.4:5366154-5366173 None:intergenic 50.0%
TTGTGACCGCATTTAGGCCA+CGG - chr1.4:5366551-5366570 None:intergenic 50.0%
! AGCTTGTTCACCAGCAAGCA+AGG - chr1.4:5366622-5366641 None:intergenic 50.0%
! ATTTTCCGGTTTTCGCGGCT+TGG + chr1.4:5367111-5367130 MS.gene66496:CDS 50.0%
!! GGGCCAGTACTTTTGTTGTC+AGG - chr1.4:5366987-5367006 None:intergenic 50.0%
ATTGGAGTGAGGACCCACTG+TGG + chr1.4:5365655-5365674 MS.gene66496:intron 55.0%
CTTGCCATCTACCATGCTGG+TGG - chr1.4:5366151-5366170 None:intergenic 55.0%
GCAAGGATAGGCAGAGTTGC+AGG + chr1.4:5366170-5366189 MS.gene66496:CDS 55.0%
TCACTCCAAGCCGCGAAAAC+CGG - chr1.4:5367119-5367138 None:intergenic 55.0%
TTATGCAGGCACCACCAGCA+TGG + chr1.4:5366137-5366156 MS.gene66496:intron 55.0%
! GTCACCGTGCCATTGCATCT+GGG - chr1.4:5364302-5364321 None:intergenic 55.0%
! TGTCACCGTGCCATTGCATC+TGG - chr1.4:5364303-5364322 None:intergenic 55.0%
ATCGGGCCTTACCTGGCGAA+GGG + chr1.4:5364185-5364204 MS.gene66496:intron 60.0%
GGCACCACCAGCATGGTAGA+TGG + chr1.4:5366144-5366163 MS.gene66496:intron 60.0%
GTGGCCCAGATGCAATGGCA+CGG + chr1.4:5364295-5364314 MS.gene66496:intron 60.0%
TATCGGGCCTTACCTGGCGA+AGG + chr1.4:5364184-5364203 MS.gene66496:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 5363631 5367145 5363631 ID=MS.gene66496
chr1.4 mRNA 5363631 5367145 5363631 ID=MS.gene66496.t1;Parent=MS.gene66496
chr1.4 exon 5363631 5363998 5363631 ID=MS.gene66496.t1.exon1;Parent=MS.gene66496.t1
chr1.4 CDS 5363631 5363998 5363631 ID=cds.MS.gene66496.t1;Parent=MS.gene66496.t1
chr1.4 exon 5364592 5364674 5364592 ID=MS.gene66496.t1.exon2;Parent=MS.gene66496.t1
chr1.4 CDS 5364592 5364674 5364592 ID=cds.MS.gene66496.t1;Parent=MS.gene66496.t1
chr1.4 exon 5365154 5365162 5365154 ID=MS.gene66496.t1.exon3;Parent=MS.gene66496.t1
chr1.4 CDS 5365154 5365162 5365154 ID=cds.MS.gene66496.t1;Parent=MS.gene66496.t1
chr1.4 exon 5365269 5365357 5365269 ID=MS.gene66496.t1.exon4;Parent=MS.gene66496.t1
chr1.4 CDS 5365269 5365357 5365269 ID=cds.MS.gene66496.t1;Parent=MS.gene66496.t1
chr1.4 exon 5365555 5365628 5365555 ID=MS.gene66496.t1.exon5;Parent=MS.gene66496.t1
chr1.4 CDS 5365555 5365628 5365555 ID=cds.MS.gene66496.t1;Parent=MS.gene66496.t1
chr1.4 exon 5366007 5366057 5366007 ID=MS.gene66496.t1.exon6;Parent=MS.gene66496.t1
chr1.4 CDS 5366007 5366057 5366007 ID=cds.MS.gene66496.t1;Parent=MS.gene66496.t1
chr1.4 exon 5366145 5366221 5366145 ID=MS.gene66496.t1.exon7;Parent=MS.gene66496.t1
chr1.4 CDS 5366145 5366221 5366145 ID=cds.MS.gene66496.t1;Parent=MS.gene66496.t1
chr1.4 exon 5366499 5367145 5366499 ID=MS.gene66496.t1.exon8;Parent=MS.gene66496.t1
chr1.4 CDS 5366499 5367145 5366499 ID=cds.MS.gene66496.t1;Parent=MS.gene66496.t1
Gene Sequence

>MS.gene66496

ATGGAAGAAGAAGAACAAACCAAGGAAGAAAGTATTTATAGCTTCAAAAACTTTGTGGCTCCTAGAGATTATTCTTTAGAGCAACATCATCATCAAGTGAATAATAGTGTTGGTAGTATTGGAGATGATGGTTCTGTGGGAACAGTTAATGGTTGTGGAGAGTTACAAACTCTAAGCCTTTCTATGAGTCCTGGTTCTCAATCAAGCTGTGTTACTGTTCCAAATCAGATTTCAGCTTCTGGAACTGATTCAGTAGTTGTTGAAGCTAAAAAGAGAGGACATGCTAAGGTTGGACAGAAGCAACCTGCTCATAGGAAAACTATTAGCACATTTGGTCAAAGAACTTCTCAGTATAGAGGAGTTACAAGGTTAGTTTCACTTTTGAGTAACATTATTAACTTGATTCCCACTAATAATTAGAGCTTATTTATTCAAATTTGTGATAGATATCCTCTATTTTGTTCTATAAACCAAAGTTGATATGGCTAGCTGATTGGTTTGATTTTAGCAACGAGATCAAACTAGGGTTGAAACGGTTCAACCTTAGTGTTTATATCGGGCCTTACCTGGCGAAGGGAAATACTTGTGTGACATTAAATCTGGATCACACATTGGGTGACATTAGATGTGTTGTGTGGCCCAGATGCAATGACAATGACAATGTGTGGCCCAGATGCAATGGCACGGTGACATTAATAAGGCCCCCCACACATGTTAATAAATAAAAAATTGAATTCACGACTTTTAAGACTGTAATAATATATTGACTTGTTTTGAGGCTTTGATATTGTAATTTGCCTTATTTCAATTATTTGTCATCCGATTCGACCATAGTTAAACCATTCGAATTCTGATGAGAAAGTTTCAAAAATGGTTTTAATTTTATGAGCCTTGGCAATTGTTTTAGTTGTTCACTTTAGTTCATGTAGTAACTACTTTTTGTTTGTTTGTTGTCTATCAGGCATAGATGGACCGGTAGATATGAAGCACATTTATGGGATAACAGTTGCAAGAAGGAAGGGCAAACAAGGAAAGGAAGACAAGGTTAGTAACCAAAAATTCTTAAATATTTTACATTATTTGTAACATACTCCCTCCGTCTTTTTTTATAAGCAAAAAATACTAATTCACACTTATTAAGAAAACCAATACTTAGTGATTTGAGGTATAATTTTTTGTGTTCTCCTTGGAATAAGTTTCATGGAAAGATGTAAAAATAATTCTCATTGGTTAAAAATTATGGAGAAAATAAAAAGATAAACAAATTGAATGCAACATGCATTTAATTTTATATTGGAAAAGATGATTTGTTTGAAAAAACACAATAATAACATAAAAGTTGGTGTTTTTTGCTTATATTTTGATACAAAGAAAATGAGATTTTTTTGCTTATATTTTAGGACGGAGGGAGTAGTACACTTTTTACATCTGAAAATATTGGTCCATTATTCTGAACTGTGTCAACTAACATGTCACATGTTCACATTGTGGATGACAAATCAACAACTCATTGTACATCACAGTTTATTTGGGTAAGTACTATGTCCTTTTTCATAGATCTATTTTTTTTTCAAACACCCTATTCCCACTATATCTGATATATATGGTAAATCTTTGTTTGTTAAAATGTTACTAAAGGTGGTTATGATATGGAAGAGAAAGCTGCAAGGGCTTATGATCTTGCTGCTCTCAAATATTGGGGACCTTCAACGCATATAAACTTCTCGGTATGTTTCACGACATAGTGGCTTTAATGACAGAGTTCAAATTCTCTTTGAGACAGTTGCAAAATGGTTATCGGTGTCAGTTTAATTAAAAATATTTTTCTCCTTGCCCGATTATTTTTTTAAAAAAAAAAAATCGAGCGAAATTTTTACTGGATTTGTACTCCTTAGAGTCTAATTGCCTTTATTATCTTTGGCAGATTGAAATTTACAAAAATGAACTCGAAGAAATGAATAACATGAATAGGCAGGAATATGTTGCTCATTTGAGAAGGTATAAACACTTACTAACTTGCTATTATTGGAGTGAGGACCCACTGTGGTCCTTGAGAAAAAATGCATCATCTAATTTAGTCTCTTAGAATAATAAAGGACAACTTTGAGTCCCTAGAGACAAATAAGTTGGGACAACTTATTCTTACTTGAACTAAATTGAAAATCGTGACAATGTTCAAGTAAAGACTAAGTTGTCTCGGTTTATTTTTCTCAAGGATTAGAATATTCTTTTATTTTTCTTAGAGAATAAATTGTGTTAGCCATTTTTTCTTGGGTATCACAATATCCCTTCACTCTAATTACTTTGTTGCTAAAAGCTATCAATTATTGATGTGCTTAATGATATGATGATACTAAGCTTTTGGTTGGTTTGCAGAAAGAGTAGTGGTTTTTCAAGGGGTGCTTCAATGTATAGAGGGGTGACAAGGTTTTGCATTTGATTCCTATGTCTATTTTCCTTTATAGATTATTTAAAAATGATTTTGTACTAACTTTAGGTTTAAATGTTATGCAGGCACCACCAGCATGGTAGATGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAGGGACCTTTATCTTGGAACATTTAGTAAGTCCGTCCAATAAATAGCATTTACATGTACTTCATTACACAGCCATAAATAATGGACTTTTTTAGGTAATAACTTGGTTTTAAGAAGATCCTTAGCACTTGGTCATTCAAATTCAAAGTCTCATCAACTTTTTTGGAATGCAGCGTGTATGACACCGACACATTTAATTACATTTATTATAATGGTTGTGCTGTGTTCGTGTCTGTCTCGTTTTGGTCTCATGAGAGCTCGATTTTCCTAAAACGCCTAGTAATTTTTTCGAATTAAATTCAGGCACTCAAGAGGAAGCGGCTGAAGCATATGATGTAGCCGCAATCAAATTCCGTGGCCTAAATGCGGTCACAAACTTCGACATGTCTAAATACAATGTTGAAAAAATCATGTCTAGCAACACCTTGCTTGCTGGTGAACAAGCTAGAAGAACAAAGAAGAGTAAAGACAGTAATGAAAAAACTGAGGCCGAAGAGTGTAACAACAATGTTGTATCAAGTCCAATCATACATAGTCAAGTAGTTGAAGCTGTGACCAACAATGAAAATAATTGGAATCAGTCCCCACAACAAGAGTCAAATACATGTGACCAAAAATTTATTAGAAATTCTGATTTCTCTATGTCCCTACAAGATATCATTGGGATTGATTCAGTAGGAGGATCTAGCCAAGTTATGGTAGATGATTCTTCCAACAAGATGATAAGGACTCATTTTTCAAATTCATCTTCACTTGTGACTAGTTTAAGTAGCTCAAGGGAATGCAGCCCTGACAACAAAAGTACTGGCCCTACAATGCTTTTTCCAAAACCTCCAACAGGATCAAAAACTTTGAGTCCTATTGCTACTAATACTGGATCTTGGTTTCCCTCAGCTAGTGCTATCTCAATGTCTCATTTTCCGGTTTTCGCGGCTTGGAGTGATGCTTAG
Protein sequence

>MS.gene66496.t1

MEEEEQTKEESIYSFKNFVAPRDYSLEQHHHQVNNSVGSIGDDGSVGTVNGCGELQTLSLSMSPGSQSSCVTVPNQISASGTDSVVVEAKKRGHAKVGQKQPAHRKTISTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFSIEIYKNELEEMNNMNRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNRDLYLGTFSTQEEAAEAYDVAAIKFRGLNAVTNFDMSKYNVEKIMSSNTLLAGEQARRTKKSKDSNEKTEAEECNNNVVSSPIIHSQVVEAVTNNENNWNQSPQQESNTCDQKFIRNSDFSMSLQDIIGIDSVGGSSQVMVDDSSNKMIRTHFSNSSSLVTSLSSSRECSPDNKSTGPTMLFPKPPTGSKTLSPIATNTGSWFPSASAISMSHFPVFAAWSDA