Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67096.t1 | ADV15621.1 | 95.5 | 290 | 9 | 2 | 1 | 286 | 1 | 290 | 3.80E-134 | 487.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67096.t1 | O48722 | 63.3 | 240 | 76 | 2 | 59 | 286 | 60 | 299 | 4.6e-80 | 299.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67096.t1 | E7ECB3 | 95.5 | 290 | 9 | 2 | 1 | 286 | 1 | 290 | 2.8e-134 | 487.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene67096 | 0.824496 | 7.82E-54 | -1.69E-46 |
| MS.gene049427 | MS.gene67096 | 0.813393 | 2.62E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene67096 | 0.811161 | 8.04E-51 | -1.69E-46 |
| MS.gene050812 | MS.gene67096 | 0.807918 | 4.00E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene67096 | 0.807823 | 4.19E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene67096 | 0.813206 | 2.88E-51 | -1.69E-46 |
| MS.gene052078 | MS.gene67096 | 0.813146 | 2.97E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene67096 | 0.83781 | 4.17E-57 | -1.69E-46 |
| MS.gene052253 | MS.gene67096 | 0.821654 | 3.60E-53 | -1.69E-46 |
| MS.gene052310 | MS.gene67096 | 0.8289 | 6.95E-55 | -1.69E-46 |
| MS.gene052322 | MS.gene67096 | 0.814528 | 1.47E-51 | -1.69E-46 |
| MS.gene053758 | MS.gene67096 | 0.823073 | 1.69E-53 | -1.69E-46 |
| MS.gene054123 | MS.gene67096 | 0.815448 | 9.20E-52 | -1.69E-46 |
| MS.gene05505 | MS.gene67096 | 0.802259 | 6.11E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene67096 | 0.809032 | 2.31E-50 | -1.69E-46 |
| MS.gene056511 | MS.gene67096 | 0.805323 | 1.41E-49 | -1.69E-46 |
| MS.gene057146 | MS.gene67096 | 0.810049 | 1.40E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene67096 | 0.823009 | 1.74E-53 | -1.69E-46 |
| MS.gene058660 | MS.gene67096 | 0.829602 | 4.70E-55 | -1.69E-46 |
| MS.gene058928 | MS.gene67096 | 0.803196 | 3.91E-49 | -1.69E-46 |
| MS.gene058993 | MS.gene67096 | 0.812855 | 3.44E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene67096 | 0.81809 | 2.35E-52 | -1.69E-46 |
| MS.gene059597 | MS.gene67096 | 0.802581 | 5.24E-49 | -1.69E-46 |
| MS.gene059688 | MS.gene67096 | 0.824778 | 6.71E-54 | -1.69E-46 |
| MS.gene059692 | MS.gene67096 | 0.803105 | 4.08E-49 | -1.69E-46 |
| MS.gene059695 | MS.gene67096 | 0.804334 | 2.27E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene67096 | 0.807016 | 6.21E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene67096 | 0.809574 | 1.77E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67096.t1 | MTR_1g019970 | 93.103 | 290 | 15 | 2 | 1 | 286 | 1 | 289 | 0.0 | 509 |
| MS.gene67096.t1 | MTR_8g019320 | 49.321 | 221 | 107 | 2 | 65 | 285 | 65 | 280 | 2.51e-74 | 229 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67096.t1 | AT2G26550 | 62.500 | 240 | 78 | 1 | 59 | 286 | 60 | 299 | 5.10e-103 | 303 |
| MS.gene67096.t1 | AT2G26550 | 58.824 | 255 | 78 | 2 | 59 | 286 | 60 | 314 | 7.13e-99 | 293 |
| MS.gene67096.t1 | AT2G26550 | 51.186 | 295 | 77 | 3 | 59 | 286 | 60 | 354 | 8.27e-90 | 271 |
| MS.gene67096.t1 | AT2G26550 | 60.000 | 210 | 72 | 1 | 59 | 256 | 60 | 269 | 5.93e-82 | 248 |
| MS.gene67096.t1 | AT2G26670 | 50.446 | 224 | 106 | 2 | 63 | 285 | 62 | 281 | 9.21e-81 | 245 |
| MS.gene67096.t1 | AT1G69720 | 48.536 | 239 | 120 | 2 | 47 | 285 | 49 | 284 | 4.56e-78 | 239 |
| MS.gene67096.t1 | AT1G69720 | 48.536 | 239 | 120 | 2 | 47 | 285 | 49 | 284 | 4.56e-78 | 239 |
| MS.gene67096.t1 | AT1G58300 | 47.945 | 219 | 105 | 2 | 68 | 285 | 72 | 282 | 2.33e-70 | 219 |
| MS.gene67096.t1 | AT2G26670 | 42.601 | 223 | 77 | 2 | 63 | 285 | 62 | 233 | 6.45e-60 | 191 |
| MS.gene67096.t1 | AT1G69720 | 48.447 | 161 | 80 | 2 | 65 | 225 | 67 | 224 | 5.55e-48 | 160 |
Find 66 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCAAGTTCCTCTAAATATT+TGG | 0.110208 | 1.3:+3734833 | None:intergenic |
| GAGAATGATGATTCTTCTTC+TGG | 0.223274 | 1.3:+3736000 | None:intergenic |
| GAAAGGCTTTCTTCGATTCT+TGG | 0.256872 | 1.3:-3735741 | MS.gene67096:CDS |
| CCTCATCTCTTCGGTGATTC+CGG | 0.265544 | 1.3:+3735874 | None:intergenic |
| CGAAGAAAGCCTTTCATAGA+AGG | 0.348541 | 1.3:+3735749 | None:intergenic |
| ACTCCAGCTCCTTACCTTCC+AGG | 0.374412 | 1.3:+3733316 | None:intergenic |
| GAACAATCTGTCCCATAAAC+TGG | 0.386716 | 1.3:+3733073 | None:intergenic |
| GATGCATACTTGAGGAAAAC+TGG | 0.393679 | 1.3:-3734951 | MS.gene67096:CDS |
| GTGATTCCGGTGGTTTCACC+AGG | 0.410208 | 1.3:+3735887 | None:intergenic |
| TTTGTCGCTGTGGAGTTTCA+TGG | 0.410902 | 1.3:+3735844 | None:intergenic |
| TACATATGCCAAATATTTAG+AGG | 0.415258 | 1.3:-3734841 | MS.gene67096:CDS |
| ATAGAAGGATACCACGTGTC+AGG | 0.419281 | 1.3:+3735764 | None:intergenic |
| AAAATGGATATTGTAGAAAT+GGG | 0.422336 | 1.3:+3734785 | None:intergenic |
| TTCATCTTCTTATCCACCGT+TGG | 0.446531 | 1.3:-3735942 | MS.gene67096:CDS |
| CGAACGCATTGTTGATGATT+CGG | 0.450060 | 1.3:-3735690 | MS.gene67096:CDS |
| TTCTCATATAACTGCTGGCC+AGG | 0.466119 | 1.3:-3734763 | MS.gene67096:CDS |
| TTAGGTATCTGAAAAGCTCC+TGG | 0.483336 | 1.3:-3733334 | MS.gene67096:intron |
| ATTTGTGCAGCATTGGGGTC+GGG | 0.486709 | 1.3:-3733136 | MS.gene67096:intron |
| GGTGTTGAAGCGTGTTCGAT+TGG | 0.492898 | 1.3:+3736021 | None:intergenic |
| GAAGGATCTAGAATGGTTGA+AGG | 0.493575 | 1.3:-3734904 | MS.gene67096:CDS |
| TATGTAGTACCAGGTGAACT+TGG | 0.493729 | 1.3:+3734858 | None:intergenic |
| AGTACCAGGTGAACTTGGAT+TGG | 0.500411 | 1.3:+3734863 | None:intergenic |
| AGTGTTGATGATGGTGGGAA+TGG | 0.502339 | 1.3:+3736046 | None:intergenic |
| AGGAGCTGGAGTTCTGCAAA+TGG | 0.505314 | 1.3:-3733305 | MS.gene67096:CDS |
| AATTTGTGCAGCATTGGGGT+CGG | 0.511624 | 1.3:-3733137 | MS.gene67096:intron |
| TGAAAAGCTCCTGGAAGGTA+AGG | 0.515112 | 1.3:-3733325 | MS.gene67096:CDS |
| GTACCAGGTGAACTTGGATT+GGG | 0.518612 | 1.3:+3734864 | None:intergenic |
| GGCAACGAACCTCATCTCTT+CGG | 0.520653 | 1.3:+3735865 | None:intergenic |
| CAAATGGGAAGGAGATGTAC+AGG | 0.523655 | 1.3:-3733289 | MS.gene67096:CDS |
| AGTGGTATTGTTGACGGTGT+TGG | 0.527238 | 1.3:+3735820 | None:intergenic |
| GTGTTGAAGCGTGTTCGATT+GGG | 0.527957 | 1.3:+3736022 | None:intergenic |
| AACAGAAGTGGTATTGTTGA+CGG | 0.534137 | 1.3:+3735814 | None:intergenic |
| CATCTCTTCGGTGATTCCGG+TGG | 0.534391 | 1.3:+3735877 | None:intergenic |
| CATGGTTGTTGCAGCTGAGT+GGG | 0.534472 | 1.3:+3736073 | None:intergenic |
| ATACTTGAGGAAAACTGGAT+TGG | 0.541626 | 1.3:-3734946 | MS.gene67096:CDS |
| GGAGCTGGAGTTCTGCAAAT+GGG | 0.549742 | 1.3:-3733304 | MS.gene67096:CDS |
| CTAGAATGGTTGAAGGAACA+AGG | 0.560120 | 1.3:-3734897 | MS.gene67096:CDS |
| ACTGGATTGGAAAGATCTGA+AGG | 0.563903 | 1.3:-3734933 | MS.gene67096:CDS |
| GCTCCTGGAAGGTAAGGAGC+TGG | 0.564683 | 1.3:-3733319 | MS.gene67096:CDS |
| GTCTTCTACTACAACAGAAG+TGG | 0.573939 | 1.3:+3735802 | None:intergenic |
| TTGGGAAGTGTTGATGATGG+TGG | 0.574296 | 1.3:+3736040 | None:intergenic |
| CCATGGTTGTTGCAGCTGAG+TGG | 0.579345 | 1.3:+3736072 | None:intergenic |
| CTTTACCCTGGTGAAACCAC+CGG | 0.583875 | 1.3:-3735893 | MS.gene67096:CDS |
| TGGCCAGGTTATTACAAAGC+AGG | 0.585011 | 1.3:-3734748 | MS.gene67096:intron |
| ACGTGGTATCCTTCTATGAA+AGG | 0.586528 | 1.3:-3735758 | MS.gene67096:CDS |
| CGATTGGGAAGTGTTGATGA+TGG | 0.589944 | 1.3:+3736037 | None:intergenic |
| GTACCTGCTTTGTAATAACC+TGG | 0.590707 | 1.3:+3734745 | None:intergenic |
| CAAATATTTAGAGGAACTTG+CGG | 0.593836 | 1.3:-3734832 | MS.gene67096:CDS |
| GTATCTGAAAAGCTCCTGGA+AGG | 0.595672 | 1.3:-3733330 | MS.gene67096:CDS |
| TGGGAAGTGTTGATGATGGT+GGG | 0.598542 | 1.3:+3736041 | None:intergenic |
| TAGAAGGATACCACGTGTCA+GGG | 0.599723 | 1.3:+3735765 | None:intergenic |
| CGGTGGATAAGAAGATGAAG+AGG | 0.599791 | 1.3:+3735946 | None:intergenic |
| CGCTATCGAAAACTTTACCC+TGG | 0.601205 | 1.3:-3735905 | MS.gene67096:CDS |
| TATTTGGCATATGTAGTACC+AGG | 0.604625 | 1.3:+3734849 | None:intergenic |
| ATTCCCAATCCAAGTTCACC+TGG | 0.607725 | 1.3:-3734867 | MS.gene67096:CDS |
| CTGGAGTTCTGCAAATGGGA+AGG | 0.610060 | 1.3:-3733300 | MS.gene67096:CDS |
| TAGAAATGGGAAAGAAACAA+AGG | 0.614055 | 1.3:+3734798 | None:intergenic |
| GAATTGCAGATGCATACTTG+AGG | 0.618600 | 1.3:-3734959 | MS.gene67096:intron |
| TTGTAATTTGTGCAGCATTG+GGG | 0.639959 | 1.3:-3733141 | MS.gene67096:intron |
| CCGGAATCACCGAAGAGATG+AGG | 0.642207 | 1.3:-3735874 | MS.gene67096:CDS |
| CCACTCAGCTGCAACAACCA+TGG | 0.658162 | 1.3:-3736072 | MS.gene67096:CDS |
| GAAGCTTAACGTGCTTGCAG+AGG | 0.660843 | 1.3:-3733244 | MS.gene67096:intron |
| TGATTCCGGTGGTTTCACCA+GGG | 0.673875 | 1.3:+3735888 | None:intergenic |
| GTTGTAGTAGAAGACTGTGA+AGG | 0.688185 | 1.3:-3735794 | MS.gene67096:CDS |
| GATGGTGGGAATGGTAACCA+TGG | 0.718374 | 1.3:+3736055 | None:intergenic |
| AAGGACAAATCCCTGACACG+TGG | 0.718573 | 1.3:-3735775 | MS.gene67096:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTAAATTTTTTTAT+AGG | - | chr1.3:3735086-3735105 | MS.gene67096:intron | 0.0% |
| !! | AATCATTCAAAAAAAAAAAT+TGG | - | chr1.3:3734643-3734662 | MS.gene67096:intron | 10.0% |
| !! | TGTTAAATTAAAAAAAATCA+AGG | + | chr1.3:3735565-3735584 | None:intergenic | 10.0% |
| !!! | ATCTTTATTTTTTTTTAATC+TGG | + | chr1.3:3735211-3735230 | None:intergenic | 10.0% |
| !!! | TCTTTATTTTTTTTTAATCT+GGG | + | chr1.3:3735210-3735229 | None:intergenic | 10.0% |
| !!! | TTTTTTGAATGATTTTTTTT+TGG | + | chr1.3:3734637-3734656 | None:intergenic | 10.0% |
| !! | AATAGTTGTTTATTCAAATA+GGG | - | chr1.3:3734097-3734116 | MS.gene67096:intron | 15.0% |
| !! | TAACAAAATCAAAATCAAAT+TGG | + | chr1.3:3733842-3733861 | None:intergenic | 15.0% |
| !! | TAATAGTTGTTTATTCAAAT+AGG | - | chr1.3:3734096-3734115 | MS.gene67096:intron | 15.0% |
| !!! | ATTTGATAGAATTTTTTGTT+GGG | - | chr1.3:3734949-3734968 | MS.gene67096:CDS | 15.0% |
| !!! | TATTTGATAGAATTTTTTGT+TGG | - | chr1.3:3734948-3734967 | MS.gene67096:CDS | 15.0% |
| !!! | TTATACTTATTATTTTTGTG+TGG | - | chr1.3:3735983-3736002 | MS.gene67096:CDS | 15.0% |
| !!! | TTTAATTTAACACAGATATT+AGG | - | chr1.3:3735573-3735592 | MS.gene67096:intron | 15.0% |
| !! | AAAAAGTTAGTGATAAGATA+GGG | - | chr1.3:3735279-3735298 | MS.gene67096:intron | 20.0% |
| !! | AAAAATGGATATTGTAGAAA+TGG | + | chr1.3:3734366-3734385 | None:intergenic | 20.0% |
| !! | AAAATGGATATTGTAGAAAT+GGG | + | chr1.3:3734365-3734384 | None:intergenic | 20.0% |
| !! | AGCTAATTTAAACTTATATG+AGG | - | chr1.3:3734674-3734693 | MS.gene67096:intron | 20.0% |
| !! | ATAATGATAAAACACAAACA+CGG | + | chr1.3:3735059-3735078 | None:intergenic | 20.0% |
| !! | ATAGTTGTTTATTCAAATAG+GGG | - | chr1.3:3734098-3734117 | MS.gene67096:intron | 20.0% |
| !! | GATTTATTGTTTAACAATCA+AGG | - | chr1.3:3734696-3734715 | MS.gene67096:intron | 20.0% |
| !! | TAAAAAGTTAGTGATAAGAT+AGG | - | chr1.3:3735278-3735297 | MS.gene67096:intron | 20.0% |
| !! | TCTTTAATAAAGAATTCCTT+AGG | + | chr1.3:3735727-3735746 | None:intergenic | 20.0% |
| !!! | AATCAAATTGGTTTCATTTA+AGG | + | chr1.3:3733830-3733849 | None:intergenic | 20.0% |
| !!! | ACTTTGAATTCATTAATTTG+AGG | - | chr1.3:3733554-3733573 | MS.gene67096:intron | 20.0% |
| !!! | ATTTTTTTTTAATCTGGGAA+TGG | + | chr1.3:3735205-3735224 | None:intergenic | 20.0% |
| !!! | TCGCAAAATAACAAATTTTA+TGG | - | chr1.3:3733964-3733983 | MS.gene67096:intron | 20.0% |
| !!! | TTGATTTGATTTAGTTATGA+TGG | - | chr1.3:3734145-3734164 | MS.gene67096:intron | 20.0% |
| !!! | TTTTTTATAGGTAAGTGAAA+CGG | - | chr1.3:3735098-3735117 | MS.gene67096:intron | 20.0% |
| !!! | TTTTTTTTAATCCTGATGAT+GGG | - | chr1.3:3734808-3734827 | MS.gene67096:CDS | 20.0% |
| !!! | TTTTTTTTTAATCCTGATGA+TGG | - | chr1.3:3734807-3734826 | MS.gene67096:CDS | 20.0% |
| ! | AAAAAAGTCATTCCAGTTTA+TGG | - | chr1.3:3736062-3736081 | MS.gene67096:CDS | 25.0% |
| ! | AAAAAGTCATTCCAGTTTAT+GGG | - | chr1.3:3736063-3736082 | MS.gene67096:CDS | 25.0% |
| ! | AAAGTTTCTTATAAGCATAC+AGG | - | chr1.3:3734499-3734518 | MS.gene67096:intron | 25.0% |
| ! | AAATGAATGAAGGAAATATG+TGG | - | chr1.3:3735022-3735041 | MS.gene67096:intron | 25.0% |
| ! | AAGTTTCTTATAAGCATACA+GGG | - | chr1.3:3734500-3734519 | MS.gene67096:intron | 25.0% |
| ! | ACAAAACACTTATAGGATAT+AGG | - | chr1.3:3733906-3733925 | MS.gene67096:intron | 25.0% |
| ! | ACATTGTCTTTCCAATATTT+AGG | - | chr1.3:3735668-3735687 | MS.gene67096:intron | 25.0% |
| ! | ACCTTATACTTTATATCCTT+GGG | - | chr1.3:3735141-3735160 | MS.gene67096:intron | 25.0% |
| ! | AGGATATAAAGTATAAGGTA+AGG | + | chr1.3:3735140-3735159 | None:intergenic | 25.0% |
| ! | ATGCTTAAAGAAATTCTTGA+TGG | + | chr1.3:3735775-3735794 | None:intergenic | 25.0% |
| ! | ATTGTCTTTCCAATATTTAG+GGG | - | chr1.3:3735670-3735689 | MS.gene67096:intron | 25.0% |
| ! | CATTGTCTTTCCAATATTTA+GGG | - | chr1.3:3735669-3735688 | MS.gene67096:intron | 25.0% |
| ! | GAATAATAACTCTTGAATGT+TGG | - | chr1.3:3735466-3735485 | MS.gene67096:intron | 25.0% |
| ! | GATATAAAGTATAAGGTAAG+GGG | + | chr1.3:3735138-3735157 | None:intergenic | 25.0% |
| ! | GGATATAAAGTATAAGGTAA+GGG | + | chr1.3:3735139-3735158 | None:intergenic | 25.0% |
| ! | TAAGTGTTTGTTTGGTTATA+TGG | - | chr1.3:3733519-3733538 | MS.gene67096:intron | 25.0% |
| ! | TACATATGCCAAATATTTAG+AGG | - | chr1.3:3734306-3734325 | MS.gene67096:intron | 25.0% |
| ! | TACCTTATACTTTATATCCT+TGG | - | chr1.3:3735140-3735159 | MS.gene67096:intron | 25.0% |
| ! | TACTAGGAATTCTTTAATTG+TGG | - | chr1.3:3735931-3735950 | MS.gene67096:CDS | 25.0% |
| ! | TTGTGTAACAAAACACTTAT+AGG | - | chr1.3:3733899-3733918 | MS.gene67096:intron | 25.0% |
| ! | TTTCAATTATGGTTGTAGTT+AGG | + | chr1.3:3734052-3734071 | None:intergenic | 25.0% |
| !! | AATCACTAAGAATTTTGTGT+GGG | - | chr1.3:3735512-3735531 | MS.gene67096:intron | 25.0% |
| !! | TAAGCAATGGTTTTCAATTA+TGG | + | chr1.3:3734063-3734082 | None:intergenic | 25.0% |
| !!! | AAGAGTTGAAGTTTTAAGTT+TGG | - | chr1.3:3735386-3735405 | MS.gene67096:intron | 25.0% |
| !!! | ATGCTCATTGTTTTAAATTG+TGG | - | chr1.3:3733939-3733958 | MS.gene67096:intron | 25.0% |
| !!! | ATTTTTTGTTGGGAAATATG+AGG | - | chr1.3:3734959-3734978 | MS.gene67096:intron | 25.0% |
| !!! | GTTTGTAGCTTATTTCTATA+AGG | - | chr1.3:3733774-3733793 | MS.gene67096:intron | 25.0% |
| !!! | TTTTTTTTTGGCTTTCAAAC+CGG | + | chr1.3:3734625-3734644 | None:intergenic | 25.0% |
| AAAGCTCCCTATAAATAGAT+TGG | + | chr1.3:3734457-3734476 | None:intergenic | 30.0% | |
| AACTCTAGACATATGGTTAA+AGG | + | chr1.3:3734749-3734768 | None:intergenic | 30.0% | |
| ACACAATCATATAAGTGCTT+AGG | + | chr1.3:3733885-3733904 | None:intergenic | 30.0% | |
| ACTCTAGACATATGGTTAAA+GGG | + | chr1.3:3734748-3734767 | None:intergenic | 30.0% | |
| AGGGAATCCAATCTATTTAT+AGG | - | chr1.3:3734447-3734466 | MS.gene67096:intron | 30.0% | |
| AGTTTCTTATAAGCATACAG+GGG | - | chr1.3:3734501-3734520 | MS.gene67096:intron | 30.0% | |
| ATTGTTTAACAATCAAGGTG+TGG | - | chr1.3:3734701-3734720 | MS.gene67096:intron | 30.0% | |
| CAAATATTTAGAGGAACTTG+CGG | - | chr1.3:3734315-3734334 | MS.gene67096:intron | 30.0% | |
| CAGCAGTTATATGAGAAAAA+TGG | + | chr1.3:3734381-3734400 | None:intergenic | 30.0% | |
| CCTTATACTTTATATCCTTG+GGG | - | chr1.3:3735142-3735161 | MS.gene67096:intron | 30.0% | |
| GCAGTTATTAAGTGTTTGTT+TGG | - | chr1.3:3733511-3733530 | MS.gene67096:intron | 30.0% | |
| GGGAATCCAATCTATTTATA+GGG | - | chr1.3:3734448-3734467 | MS.gene67096:intron | 30.0% | |
| TAGAAATGGGAAAGAAACAA+AGG | + | chr1.3:3734352-3734371 | None:intergenic | 30.0% | |
| TTTCTTGTGGGTATTTGATT+TGG | + | chr1.3:3734886-3734905 | None:intergenic | 30.0% | |
| ! | AAATTTTATGGTCTCTGCAA+TGG | - | chr1.3:3733976-3733995 | MS.gene67096:intron | 30.0% |
| ! | AAGATCTGAAGGAATTTTGA+AGG | - | chr1.3:3734225-3734244 | MS.gene67096:intron | 30.0% |
| ! | ACTTTTCCCATCTCTTAAAA+GGG | - | chr1.3:3734428-3734447 | MS.gene67096:intron | 30.0% |
| ! | AGATGTGCAATTTTTCTTGT+GGG | + | chr1.3:3734898-3734917 | None:intergenic | 30.0% |
| ! | CAATCACTAAGAATTTTGTG+TGG | - | chr1.3:3735511-3735530 | MS.gene67096:intron | 30.0% |
| ! | CATTTTTCTCATATAACTGC+TGG | - | chr1.3:3734379-3734398 | MS.gene67096:intron | 30.0% |
| ! | CTATTTATAGGGAGCTTTTA+TGG | - | chr1.3:3734459-3734478 | MS.gene67096:intron | 30.0% |
| ! | CTTTTTCTCAATCTCACTTA+TGG | + | chr1.3:3735307-3735326 | None:intergenic | 30.0% |
| ! | TAGATGTGCAATTTTTCTTG+TGG | + | chr1.3:3734899-3734918 | None:intergenic | 30.0% |
| !! | GAATTTTGAAGGATCTAGAA+TGG | - | chr1.3:3734236-3734255 | MS.gene67096:intron | 30.0% |
| !! | GCTTATTTCTATAAGGTATC+AGG | - | chr1.3:3733781-3733800 | MS.gene67096:intron | 30.0% |
| AACAGAAGTGGTATTGTTGA+CGG | + | chr1.3:3733336-3733355 | None:intergenic | 35.0% | |
| AGAATGAGCAAGGTAATTGT+AGG | - | chr1.3:3735596-3735615 | MS.gene67096:intron | 35.0% | |
| AGAGCTTGTAGAATAAGCAA+TGG | + | chr1.3:3734076-3734095 | None:intergenic | 35.0% | |
| AGATATTAGGAGAATGAGCA+AGG | - | chr1.3:3735586-3735605 | MS.gene67096:intron | 35.0% | |
| AGGTTAAAAATAGCGTTTCG+AGG | - | chr1.3:3733574-3733593 | MS.gene67096:intron | 35.0% | |
| AGTCTTGAGGTTTAACTGTT+TGG | - | chr1.3:3735168-3735187 | MS.gene67096:intron | 35.0% | |
| ATACTTGAGGAAAACTGGAT+TGG | - | chr1.3:3734201-3734220 | MS.gene67096:intron | 35.0% | |
| CCCCAAGGATATAAAGTATA+AGG | + | chr1.3:3735145-3735164 | None:intergenic | 35.0% | |
| CGCAAGTTCCTCTAAATATT+TGG | + | chr1.3:3734317-3734336 | None:intergenic | 35.0% | |
| CTTAAAACTTCAACTCTTCG+AGG | + | chr1.3:3735384-3735403 | None:intergenic | 35.0% | |
| CTTGAATGTTGGATCAGTAA+GGG | - | chr1.3:3735477-3735496 | MS.gene67096:intron | 35.0% | |
| GAAATATGAGGAACAAGAGA+AGG | - | chr1.3:3734971-3734990 | MS.gene67096:intron | 35.0% | |
| GAACAAGAGTGAAGTAGAAT+GGG | - | chr1.3:3734993-3735012 | MS.gene67096:intron | 35.0% | |
| GAGAATGATGATTCTTCTTC+TGG | + | chr1.3:3733150-3733169 | None:intergenic | 35.0% | |
| GTTTCTTATAAGCATACAGG+GGG | - | chr1.3:3734502-3734521 | MS.gene67096:intron | 35.0% | |
| TATTTGGCATATGTAGTACC+AGG | + | chr1.3:3734301-3734320 | None:intergenic | 35.0% | |
| TCTTGAATGTTGGATCAGTA+AGG | - | chr1.3:3735476-3735495 | MS.gene67096:intron | 35.0% | |
| TCTTTCCAATATTTAGGGGT+GGG | - | chr1.3:3735674-3735693 | MS.gene67096:intron | 35.0% | |
| TTTAAGAGATGGGAAAAGTG+AGG | + | chr1.3:3734427-3734446 | None:intergenic | 35.0% | |
| ! | ATATGTCTAGAGTTCGAATC+CGG | - | chr1.3:3734755-3734774 | MS.gene67096:CDS | 35.0% |
| ! | CACTTTTCCCATCTCTTAAA+AGG | - | chr1.3:3734427-3734446 | MS.gene67096:intron | 35.0% |
| ! | CGGTTTCTTTTTCTAACCAA+CGG | + | chr1.3:3733224-3733243 | None:intergenic | 35.0% |
| ! | GTAAGCTAAATCTTGAGTTG+TGG | + | chr1.3:3735362-3735381 | None:intergenic | 35.0% |
| ! | GTTGTAATTTGTGCAGCATT+GGG | - | chr1.3:3736005-3736024 | MS.gene67096:CDS | 35.0% |
| ! | TTGTAATTTGTGCAGCATTG+GGG | - | chr1.3:3736006-3736025 | MS.gene67096:CDS | 35.0% |
| ! | TTTCTTTTTCTAACCAACGG+TGG | + | chr1.3:3733221-3733240 | None:intergenic | 35.0% |
| !! | TGGATTCCCTTTTAAGAGAT+GGG | + | chr1.3:3734437-3734456 | None:intergenic | 35.0% |
| !! | TTGGATTCCCTTTTAAGAGA+TGG | + | chr1.3:3734438-3734457 | None:intergenic | 35.0% |
| !! | TTTAATCCTGATGATGGGAA+TGG | - | chr1.3:3734813-3734832 | MS.gene67096:CDS | 35.0% |
| !!! | GTCATTCTGTTGTTGCTTTT+AGG | - | chr1.3:3735795-3735814 | MS.gene67096:CDS | 35.0% |
| AAGAGTGAAGTAGAATGGGA+AGG | - | chr1.3:3734997-3735016 | MS.gene67096:intron | 40.0% | |
| ACGTGGTATCCTTCTATGAA+AGG | - | chr1.3:3733389-3733408 | MS.gene67096:intron | 40.0% | |
| AGAGTGAAGTAGAATGGGAA+GGG | - | chr1.3:3734998-3735017 | MS.gene67096:intron | 40.0% | |
| CGAAGAAAGCCTTTCATAGA+AGG | + | chr1.3:3733401-3733420 | None:intergenic | 40.0% | |
| CTAGAATGGTTGAAGGAACA+AGG | - | chr1.3:3734250-3734269 | MS.gene67096:intron | 40.0% | |
| GAAAGGCTTTCTTCGATTCT+TGG | - | chr1.3:3733406-3733425 | MS.gene67096:intron | 40.0% | |
| GAACAATCTGTCCCATAAAC+TGG | + | chr1.3:3736077-3736096 | None:intergenic | 40.0% | |
| GAATTGCAGATGCATACTTG+AGG | - | chr1.3:3734188-3734207 | MS.gene67096:intron | 40.0% | |
| GATGCATACTTGAGGAAAAC+TGG | - | chr1.3:3734196-3734215 | MS.gene67096:intron | 40.0% | |
| GATTTCCCACCCCTAAATAT+TGG | + | chr1.3:3735682-3735701 | None:intergenic | 40.0% | |
| GGAACAAGAGTGAAGTAGAA+TGG | - | chr1.3:3734992-3735011 | MS.gene67096:intron | 40.0% | |
| GGATTCGAACTCTAGACATA+TGG | + | chr1.3:3734756-3734775 | None:intergenic | 40.0% | |
| GTACCTGCTTTGTAATAACC+TGG | + | chr1.3:3734405-3734424 | None:intergenic | 40.0% | |
| GTCTTCTACTACAACAGAAG+TGG | + | chr1.3:3733348-3733367 | None:intergenic | 40.0% | |
| GTCTTTCCAATATTTAGGGG+TGG | - | chr1.3:3735673-3735692 | MS.gene67096:intron | 40.0% | |
| GTTGTAGTAGAAGACTGTGA+AGG | - | chr1.3:3733353-3733372 | MS.gene67096:intron | 40.0% | |
| TATGTAGTACCAGGTGAACT+TGG | + | chr1.3:3734292-3734311 | None:intergenic | 40.0% | |
| TCTGATTCAGAGTTCACTAC+AGG | + | chr1.3:3735704-3735723 | None:intergenic | 40.0% | |
| TGAACTCTGAATCAGACCTA+AGG | - | chr1.3:3735708-3735727 | MS.gene67096:CDS | 40.0% | |
| TGGGAAGGGAAAATGAATGA+AGG | - | chr1.3:3735012-3735031 | MS.gene67096:intron | 40.0% | |
| TTAGGTATCTGAAAAGCTCC+TGG | - | chr1.3:3735813-3735832 | MS.gene67096:CDS | 40.0% | |
| TTCATCTTCTTATCCACCGT+TGG | - | chr1.3:3733205-3733224 | MS.gene67096:intron | 40.0% | |
| ! | ACTGGATTGGAAAGATCTGA+AGG | - | chr1.3:3734214-3734233 | MS.gene67096:intron | 40.0% |
| ! | CAGGGTAAAGTTTTCGATAG+CGG | + | chr1.3:3733244-3733263 | None:intergenic | 40.0% |
| ! | GAAGGATCTAGAATGGTTGA+AGG | - | chr1.3:3734243-3734262 | MS.gene67096:intron | 40.0% |
| ! | GGTTGTAATTTGTGCAGCAT+TGG | - | chr1.3:3736004-3736023 | MS.gene67096:CDS | 40.0% |
| ! | TTAATCTGGGAATGGACTCA+TGG | + | chr1.3:3735197-3735216 | None:intergenic | 40.0% |
| !! | AAGCACTTCTGAGACTGTTT+GGG | - | chr1.3:3733719-3733738 | MS.gene67096:intron | 40.0% |
| !! | CGAACGCATTGTTGATGATT+CGG | - | chr1.3:3733457-3733476 | MS.gene67096:intron | 40.0% |
| AACCTCAAGACTAATCCCCA+AGG | + | chr1.3:3735160-3735179 | None:intergenic | 45.0% | |
| AGAGTTCGAATCCGGATGAT+GGG | - | chr1.3:3734763-3734782 | MS.gene67096:CDS | 45.0% | |
| AGTACCAGGTGAACTTGGAT+TGG | + | chr1.3:3734287-3734306 | None:intergenic | 45.0% | |
| AGTGGTATTGTTGACGGTGT+TGG | + | chr1.3:3733330-3733349 | None:intergenic | 45.0% | |
| ATAGAAGGATACCACGTGTC+AGG | + | chr1.3:3733386-3733405 | None:intergenic | 45.0% | |
| ATTCCCAATCCAAGTTCACC+TGG | - | chr1.3:3734280-3734299 | MS.gene67096:intron | 45.0% | |
| CAAATGGGAAGGAGATGTAC+AGG | - | chr1.3:3735858-3735877 | MS.gene67096:CDS | 45.0% | |
| CGCTATCGAAAACTTTACCC+TGG | - | chr1.3:3733242-3733261 | MS.gene67096:intron | 45.0% | |
| CGGTGGATAAGAAGATGAAG+AGG | + | chr1.3:3733204-3733223 | None:intergenic | 45.0% | |
| GCTTGCAGAGGTAGATTACT+AGG | - | chr1.3:3735915-3735934 | MS.gene67096:CDS | 45.0% | |
| GGCTGATGAGGTTGAAATTG+CGG | + | chr1.3:3734010-3734029 | None:intergenic | 45.0% | |
| GTACCAGGTGAACTTGGATT+GGG | + | chr1.3:3734286-3734305 | None:intergenic | 45.0% | |
| GTATCTGAAAAGCTCCTGGA+AGG | - | chr1.3:3735817-3735836 | MS.gene67096:CDS | 45.0% | |
| GTGTTGAAGCGTGTTCGATT+GGG | + | chr1.3:3733128-3733147 | None:intergenic | 45.0% | |
| TAAGCATACAGGGGGAATAC+CGG | - | chr1.3:3734510-3734529 | MS.gene67096:intron | 45.0% | |
| TAGAAGGATACCACGTGTCA+GGG | + | chr1.3:3733385-3733404 | None:intergenic | 45.0% | |
| TAGAGTTCGAATCCGGATGA+TGG | - | chr1.3:3734762-3734781 | MS.gene67096:CDS | 45.0% | |
| TGAAAAGCTCCTGGAAGGTA+AGG | - | chr1.3:3735822-3735841 | MS.gene67096:CDS | 45.0% | |
| TGGCCAGGTTATTACAAAGC+AGG | - | chr1.3:3734399-3734418 | MS.gene67096:intron | 45.0% | |
| TTCCCAGGAGGAACAACATT+TGG | - | chr1.3:3734539-3734558 | MS.gene67096:intron | 45.0% | |
| TTCTCATATAACTGCTGGCC+AGG | - | chr1.3:3734384-3734403 | MS.gene67096:intron | 45.0% | |
| TTTGTCGCTGTGGAGTTTCA+TGG | + | chr1.3:3733306-3733325 | None:intergenic | 45.0% | |
| ! | AATTTGTGCAGCATTGGGGT+CGG | - | chr1.3:3736010-3736029 | MS.gene67096:CDS | 45.0% |
| !! | AGTGTTGATGATGGTGGGAA+TGG | + | chr1.3:3733104-3733123 | None:intergenic | 45.0% |
| !! | ATCCTTGGGGATTAGTCTTG+AGG | - | chr1.3:3735155-3735174 | MS.gene67096:intron | 45.0% |
| !! | CAAGCACTTCTGAGACTGTT+TGG | - | chr1.3:3733718-3733737 | MS.gene67096:intron | 45.0% |
| !! | CGATTGGGAAGTGTTGATGA+TGG | + | chr1.3:3733113-3733132 | None:intergenic | 45.0% |
| !! | TGGGAAGTGTTGATGATGGT+GGG | + | chr1.3:3733109-3733128 | None:intergenic | 45.0% |
| !! | TTGGGAAGTGTTGATGATGG+TGG | + | chr1.3:3733110-3733129 | None:intergenic | 45.0% |
| AAGCATACAGGGGGAATACC+GGG | - | chr1.3:3734511-3734530 | MS.gene67096:intron | 50.0% | |
| AAGGACAAATCCCTGACACG+TGG | - | chr1.3:3733372-3733391 | MS.gene67096:intron | 50.0% | |
| AGGAGCTGGAGTTCTGCAAA+TGG | - | chr1.3:3735842-3735861 | MS.gene67096:CDS | 50.0% | |
| ATTAGTCGCCCACCATTGGT+GGG | - | chr1.3:3734592-3734611 | MS.gene67096:intron | 50.0% | |
| CATGGTTGTTGCAGCTGAGT+GGG | + | chr1.3:3733077-3733096 | None:intergenic | 50.0% | |
| CCTCATCAGCCGCAATACAA+AGG | - | chr1.3:3734019-3734038 | MS.gene67096:intron | 50.0% | |
| CCTCATCTCTTCGGTGATTC+CGG | + | chr1.3:3733276-3733295 | None:intergenic | 50.0% | |
| CCTTTGTATTGCGGCTGATG+AGG | + | chr1.3:3734022-3734041 | None:intergenic | 50.0% | |
| CTGGAGTTCTGCAAATGGGA+AGG | - | chr1.3:3735847-3735866 | MS.gene67096:CDS | 50.0% | |
| CTTTACCCTGGTGAAACCAC+CGG | - | chr1.3:3733254-3733273 | MS.gene67096:CDS | 50.0% | |
| GAAGCTTAACGTGCTTGCAG+AGG | - | chr1.3:3735903-3735922 | MS.gene67096:CDS | 50.0% | |
| GCATCTCCATTCCCATCATC+AGG | + | chr1.3:3734777-3734796 | None:intergenic | 50.0% | |
| GCATCTCCATTCCCATCATC+CGG | + | chr1.3:3734777-3734796 | None:intergenic | 50.0% | |
| GGAGCTGGAGTTCTGCAAAT+GGG | - | chr1.3:3735843-3735862 | MS.gene67096:CDS | 50.0% | |
| GGCAACGAACCTCATCTCTT+CGG | + | chr1.3:3733285-3733304 | None:intergenic | 50.0% | |
| GGCCAAATGTTGTTCCTCCT+GGG | + | chr1.3:3734544-3734563 | None:intergenic | 50.0% | |
| GGCTGTGAGCCTTTGTATTG+CGG | + | chr1.3:3734031-3734050 | None:intergenic | 50.0% | |
| TGATTCCGGTGGTTTCACCA+GGG | + | chr1.3:3733262-3733281 | None:intergenic | 50.0% | |
| TGGCCAAATGTTGTTCCTCC+TGG | + | chr1.3:3734545-3734564 | None:intergenic | 50.0% | |
| ! | ATTTGTGCAGCATTGGGGTC+GGG | - | chr1.3:3736011-3736030 | MS.gene67096:CDS | 50.0% |
| ! | GGTGTTGAAGCGTGTTCGAT+TGG | + | chr1.3:3733129-3733148 | None:intergenic | 50.0% |
| !! | AGTCTCAGAAGTGCTTGCGT+CGG | + | chr1.3:3733715-3733734 | None:intergenic | 50.0% |
| !! | GATGGTGGGAATGGTAACCA+TGG | + | chr1.3:3733095-3733114 | None:intergenic | 50.0% |
| !! | TCGAATCCGGATGATGGGAA+TGG | - | chr1.3:3734768-3734787 | MS.gene67096:CDS | 50.0% |
| ACTCCAGCTCCTTACCTTCC+AGG | + | chr1.3:3735834-3735853 | None:intergenic | 55.0% | |
| CATCTCTTCGGTGATTCCGG+TGG | + | chr1.3:3733273-3733292 | None:intergenic | 55.0% | |
| CCACTCAGCTGCAACAACCA+TGG | - | chr1.3:3733075-3733094 | MS.gene67096:CDS | 55.0% | |
| CCATGGTTGTTGCAGCTGAG+TGG | + | chr1.3:3733078-3733097 | None:intergenic | 55.0% | |
| CCGGAATCACCGAAGAGATG+AGG | - | chr1.3:3733273-3733292 | MS.gene67096:CDS | 55.0% | |
| CTAATCCGGCTCATGCGTAG+AGG | + | chr1.3:3734577-3734596 | None:intergenic | 55.0% | |
| GAATACCGGGTTCGATTCCC+AGG | - | chr1.3:3734524-3734543 | MS.gene67096:intron | 55.0% | |
| GTGATTCCGGTGGTTTCACC+AGG | + | chr1.3:3733263-3733282 | None:intergenic | 55.0% | |
| GTTTCCGACCCACCAATGGT+GGG | + | chr1.3:3734603-3734622 | None:intergenic | 55.0% | |
| TTCCTCCTGGGAATCGAACC+CGG | + | chr1.3:3734532-3734551 | None:intergenic | 55.0% | |
| ! | ACCATTGGTGGGTCGGAAAC+CGG | - | chr1.3:3734603-3734622 | MS.gene67096:intron | 55.0% |
| ! | GATTAGTCGCCCACCATTGG+TGG | - | chr1.3:3734591-3734610 | MS.gene67096:intron | 55.0% |
| !! | CCAATGGTGGGCGACTAATC+CGG | + | chr1.3:3734591-3734610 | None:intergenic | 55.0% |
| !!! | CGGTGTTGGTTTTGTCGCTG+TGG | + | chr1.3:3733316-3733335 | None:intergenic | 55.0% |
| GCATGCCTCTACGCATGAGC+CGG | - | chr1.3:3734569-3734588 | MS.gene67096:intron | 60.0% | |
| GCTCCTGGAAGGTAAGGAGC+TGG | - | chr1.3:3735828-3735847 | MS.gene67096:CDS | 60.0% | |
| GGTTTCCGACCCACCAATGG+TGG | + | chr1.3:3734604-3734623 | None:intergenic | 60.0% | |
| TACCGGGTTCGATTCCCAGG+AGG | - | chr1.3:3734527-3734546 | MS.gene67096:intron | 60.0% | |
| ! | ACCGGTTTCCGACCCACCAA+TGG | + | chr1.3:3734607-3734626 | None:intergenic | 60.0% |
| ! | ATGCGTAGAGGCATGCGCAC+TGG | + | chr1.3:3734565-3734584 | None:intergenic | 60.0% |
| !! | CCGGATTAGTCGCCCACCAT+TGG | - | chr1.3:3734588-3734607 | MS.gene67096:intron | 60.0% |
| ! | GTCGCCCACCATTGGTGGGT+CGG | - | chr1.3:3734596-3734615 | MS.gene67096:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 3733056 | 3736113 | 3733056 | ID=MS.gene67096 |
| chr1.3 | mRNA | 3733056 | 3736113 | 3733056 | ID=MS.gene67096.t1;Parent=MS.gene67096 |
| chr1.3 | exon | 3735678 | 3736113 | 3735678 | ID=MS.gene67096.t1.exon1;Parent=MS.gene67096.t1 |
| chr1.3 | CDS | 3735678 | 3736113 | 3735678 | ID=cds.MS.gene67096.t1;Parent=MS.gene67096.t1 |
| chr1.3 | exon | 3734749 | 3734972 | 3734749 | ID=MS.gene67096.t1.exon2;Parent=MS.gene67096.t1 |
| chr1.3 | CDS | 3734749 | 3734972 | 3734749 | ID=cds.MS.gene67096.t1;Parent=MS.gene67096.t1 |
| chr1.3 | exon | 3733245 | 3733352 | 3733245 | ID=MS.gene67096.t1.exon3;Parent=MS.gene67096.t1 |
| chr1.3 | CDS | 3733245 | 3733352 | 3733245 | ID=cds.MS.gene67096.t1;Parent=MS.gene67096.t1 |
| chr1.3 | exon | 3733056 | 3733148 | 3733056 | ID=MS.gene67096.t1.exon4;Parent=MS.gene67096.t1 |
| chr1.3 | CDS | 3733056 | 3733148 | 3733056 | ID=cds.MS.gene67096.t1;Parent=MS.gene67096.t1 |
| Gene Sequence |
| Protein sequence |
