Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67377.t1 | GAU45792.1 | 91.8 | 304 | 22 | 2 | 1 | 301 | 1 | 304 | 2.80E-127 | 464.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67377.t1 | Q9SIA8 | 69.1 | 233 | 62 | 4 | 78 | 301 | 216 | 447 | 4.9e-64 | 246.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67377.t1 | A0A2Z6P9X2 | 91.8 | 304 | 22 | 2 | 1 | 301 | 1 | 304 | 2.0e-127 | 464.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene67377 | 0.802115 | 6.54E-49 | -1.69E-46 |
| MS.gene049761 | MS.gene67377 | 0.807507 | 4.89E-50 | -1.69E-46 |
| MS.gene051996 | MS.gene67377 | 0.816161 | 6.38E-52 | -1.69E-46 |
| MS.gene052211 | MS.gene67377 | 0.808668 | 2.77E-50 | -1.69E-46 |
| MS.gene052223 | MS.gene67377 | 0.804569 | 2.03E-49 | -1.69E-46 |
| MS.gene05240 | MS.gene67377 | 0.800195 | 1.62E-48 | -1.69E-46 |
| MS.gene054138 | MS.gene67377 | 0.852443 | 4.60E-61 | -1.69E-46 |
| MS.gene054277 | MS.gene67377 | 0.806634 | 7.48E-50 | -1.69E-46 |
| MS.gene054742 | MS.gene67377 | 0.851699 | 7.49E-61 | -1.69E-46 |
| MS.gene055240 | MS.gene67377 | 0.811916 | 5.51E-51 | -1.69E-46 |
| MS.gene056330 | MS.gene67377 | 0.855005 | 8.43E-62 | -1.69E-46 |
| MS.gene056920 | MS.gene67377 | 0.81729 | 3.56E-52 | -1.69E-46 |
| MS.gene056922 | MS.gene67377 | 0.822275 | 2.58E-53 | -1.69E-46 |
| MS.gene056923 | MS.gene67377 | 0.816427 | 5.56E-52 | -1.69E-46 |
| MS.gene056924 | MS.gene67377 | 0.829054 | 6.38E-55 | -1.69E-46 |
| MS.gene057544 | MS.gene67377 | 0.808945 | 2.41E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene67377 | 0.821357 | 4.21E-53 | -1.69E-46 |
| MS.gene059891 | MS.gene67377 | 0.803778 | 2.96E-49 | -1.69E-46 |
| MS.gene059892 | MS.gene67377 | 0.803675 | 3.11E-49 | -1.69E-46 |
| MS.gene060087 | MS.gene67377 | 0.854995 | 8.49E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67377.t1 | MTR_4g062470 | 92.459 | 305 | 18 | 2 | 1 | 301 | 1 | 304 | 4.54e-168 | 468 |
| MS.gene67377.t1 | MTR_4g062520 | 93.729 | 303 | 17 | 2 | 1 | 301 | 1 | 303 | 7.91e-159 | 445 |
| MS.gene67377.t1 | MTR_1g115510 | 44.043 | 277 | 138 | 9 | 39 | 301 | 80 | 353 | 1.66e-63 | 204 |
| MS.gene67377.t1 | MTR_7g021300 | 44.444 | 279 | 131 | 9 | 39 | 300 | 117 | 388 | 1.32e-62 | 203 |
| MS.gene67377.t1 | MTR_4g062460 | 41.071 | 224 | 124 | 4 | 80 | 299 | 38 | 257 | 2.24e-51 | 170 |
| MS.gene67377.t1 | MTR_1g046800 | 45.575 | 226 | 113 | 5 | 76 | 301 | 35 | 250 | 2.31e-49 | 164 |
| MS.gene67377.t1 | MTR_1g046500 | 46.288 | 229 | 107 | 7 | 76 | 301 | 35 | 250 | 3.12e-47 | 159 |
| MS.gene67377.t1 | MTR_1g046490 | 45.614 | 228 | 112 | 7 | 76 | 301 | 19 | 236 | 9.17e-46 | 155 |
| MS.gene67377.t1 | MTR_1g115515 | 34.146 | 205 | 94 | 8 | 77 | 275 | 40 | 209 | 3.08e-23 | 95.9 |
| MS.gene67377.t1 | MTR_7g093820 | 37.383 | 107 | 66 | 1 | 175 | 280 | 71 | 177 | 1.78e-11 | 62.4 |
| MS.gene67377.t1 | MTR_7g093850 | 37.383 | 107 | 66 | 1 | 175 | 280 | 71 | 177 | 1.94e-11 | 62.4 |
| MS.gene67377.t1 | MTR_7g093830 | 37.383 | 107 | 66 | 1 | 175 | 280 | 70 | 176 | 4.77e-11 | 61.2 |
| MS.gene67377.t1 | MTR_4g013310 | 37.000 | 100 | 59 | 3 | 185 | 282 | 87 | 184 | 5.44e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67377.t1 | AT1G07730 | 66.109 | 239 | 71 | 5 | 70 | 301 | 154 | 389 | 6.43e-90 | 273 |
| MS.gene67377.t1 | AT2G28670 | 67.089 | 237 | 66 | 5 | 74 | 301 | 203 | 436 | 3.51e-88 | 270 |
| MS.gene67377.t1 | AT2G28670 | 67.401 | 227 | 64 | 4 | 84 | 301 | 1 | 226 | 3.67e-87 | 260 |
| MS.gene67377.t1 | AT3G55230 | 41.558 | 308 | 153 | 9 | 14 | 301 | 3 | 303 | 1.69e-66 | 210 |
| MS.gene67377.t1 | AT2G39430 | 46.186 | 236 | 111 | 5 | 80 | 301 | 87 | 320 | 6.56e-62 | 199 |
| MS.gene67377.t1 | AT4G13580 | 42.500 | 240 | 114 | 8 | 68 | 301 | 23 | 244 | 1.11e-44 | 152 |
| MS.gene67377.t1 | AT3G24020 | 43.363 | 226 | 104 | 8 | 82 | 301 | 36 | 243 | 1.03e-43 | 150 |
| MS.gene67377.t1 | AT2G21100 | 34.677 | 124 | 73 | 4 | 156 | 276 | 49 | 167 | 2.68e-12 | 64.7 |
| MS.gene67377.t1 | AT2G21100 | 34.677 | 124 | 73 | 4 | 156 | 276 | 49 | 167 | 2.68e-12 | 64.7 |
Find 78 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAAAGCAATAATGTTTA+TGG | 0.169315 | 4.1:+37507994 | MS.gene67377:CDS |
| GCTGTTGTTGGGGCGGGAAG+TGG | 0.259547 | 4.1:-37508133 | None:intergenic |
| GAAGATAGTCTCAGCTTCTT+TGG | 0.282557 | 4.1:+37508667 | MS.gene67377:CDS |
| GTGTTCAATAACAATAATAA+TGG | 0.298009 | 4.1:+37508421 | MS.gene67377:CDS |
| CTGTTGTTGGGGCGGGAAGT+GGG | 0.299479 | 4.1:-37508132 | None:intergenic |
| CACTGCTCTTGCTGTTGGAT+TGG | 0.326451 | 4.1:-37508230 | None:intergenic |
| TGTTGTTGGGGCGGGAAGTG+GGG | 0.327799 | 4.1:-37508131 | None:intergenic |
| GAATCAATAACTGGCTCTTC+TGG | 0.328710 | 4.1:-37508079 | None:intergenic |
| TTAAAAGACATCCTACTAAT+AGG | 0.333033 | 4.1:-37508857 | None:intergenic |
| GTTGTTGGGGCGGGAAGTGG+GGG | 0.334022 | 4.1:-37508130 | None:intergenic |
| CAATCACAACTTGCAATCAT+TGG | 0.336329 | 4.1:+37508715 | MS.gene67377:CDS |
| AACAACCTTCCTTTCCTAAC+AGG | 0.341039 | 4.1:+37508376 | MS.gene67377:CDS |
| CCGGTTGTTGTGGCTGTTGT+TGG | 0.358039 | 4.1:-37508145 | None:intergenic |
| CTTGCAATCATTGGAGGAAC+TGG | 0.372185 | 4.1:+37508724 | MS.gene67377:CDS |
| TGTTTCCACTGAGTCCTGTT+AGG | 0.375647 | 4.1:-37508390 | None:intergenic |
| AGAGGAAGGTTTGCACCATT+TGG | 0.376151 | 4.1:-37508304 | None:intergenic |
| CGGTTGTTGTGGCTGTTGTT+GGG | 0.380341 | 4.1:-37508144 | None:intergenic |
| CCTGTCACTGCTCTTGCTGT+TGG | 0.385586 | 4.1:-37508235 | None:intergenic |
| CATAAACATTATTGCTTTGA+GGG | 0.387896 | 4.1:-37507993 | None:intergenic |
| CCATAAACATTATTGCTTTG+AGG | 0.392895 | 4.1:-37507994 | None:intergenic |
| GGAAAGTATGTGAATGCTAA+TGG | 0.401273 | 4.1:+37508745 | MS.gene67377:CDS |
| ACTGCAAAGTTTGAAGAGAA+TGG | 0.412582 | 4.1:+37508640 | MS.gene67377:CDS |
| TGTTCAATAACAATAATAAT+GGG | 0.421227 | 4.1:+37508422 | MS.gene67377:CDS |
| GACTCTGCAGAATCAATAAC+TGG | 0.427356 | 4.1:-37508088 | None:intergenic |
| CCAACAACAGCCACAACAAC+CGG | 0.434326 | 4.1:+37508145 | MS.gene67377:CDS |
| GAGTTGGGATCAGGATTAGT+TGG | 0.447746 | 4.1:+37508556 | MS.gene67377:CDS |
| AGCAATAATGTTTATGGCAA+TGG | 0.449345 | 4.1:+37508000 | MS.gene67377:CDS |
| GTTGTGGCTGTTGTTGGGGC+GGG | 0.451477 | 4.1:-37508139 | None:intergenic |
| TGTGGAACACCGTTGTTTAG+AGG | 0.452866 | 4.1:-37508322 | None:intergenic |
| AAATGCAACTTGAGCATTGA+GGG | 0.454851 | 4.1:-37508275 | None:intergenic |
| ATCTGATTCATATTCGTCAC+TGG | 0.455201 | 4.1:-37508457 | None:intergenic |
| GACAGGAGTCGTTACAAATC+CGG | 0.460979 | 4.1:+37508252 | MS.gene67377:CDS |
| ATCCTACTAATAGGAAAGAT+AGG | 0.464221 | 4.1:-37508848 | None:intergenic |
| GAAGGTGAAGAGTTGGGATC+AGG | 0.478076 | 4.1:+37508547 | MS.gene67377:CDS |
| GTGAAACTTGTGTTGTTCTG+TGG | 0.480336 | 4.1:-37508693 | None:intergenic |
| TTATGTTGTTGACCGTTGAC+TGG | 0.480745 | 4.1:-37508790 | None:intergenic |
| TTGTTGGGGCGGGAAGTGGG+GGG | 0.483534 | 4.1:-37508129 | None:intergenic |
| ACGGTGCAGGAGCTGATGTT+TGG | 0.486630 | 4.1:+37508493 | MS.gene67377:CDS |
| GGGGAGAAGGGCAGAAACAG+GGG | 0.487325 | 4.1:-37508110 | None:intergenic |
| GATAGTGTGTGGTGCTGATC+GGG | 0.493125 | 4.1:-37508178 | None:intergenic |
| GTTGCATTTGCAAAGCCAAA+TGG | 0.506019 | 4.1:+37508289 | MS.gene67377:CDS |
| CTGACAGAAGGTGAAGAGTT+GGG | 0.519027 | 4.1:+37508541 | MS.gene67377:CDS |
| ACTGACAGAAGGTGAAGAGT+TGG | 0.521230 | 4.1:+37508540 | MS.gene67377:CDS |
| TGTTGTGGCTGTTGTTGGGG+CGG | 0.523833 | 4.1:-37508140 | None:intergenic |
| GGTTGTTGTGGCTGTTGTTG+GGG | 0.531274 | 4.1:-37508143 | None:intergenic |
| AATAGGAAAGATAGGCAGTA+AGG | 0.535211 | 4.1:-37508840 | None:intergenic |
| CGATAGTGTGTGGTGCTGAT+CGG | 0.540241 | 4.1:-37508179 | None:intergenic |
| CCAACAGCAAGAGCAGTGAC+AGG | 0.543835 | 4.1:+37508235 | MS.gene67377:CDS |
| TCAGATACCGCAGGGAACTA+CGG | 0.544866 | 4.1:+37508474 | MS.gene67377:CDS |
| ACCGCAGGGAACTACGGTGC+AGG | 0.547161 | 4.1:+37508480 | MS.gene67377:CDS |
| GCAACTTGAGCATTGAGGGC+CGG | 0.547582 | 4.1:-37508271 | None:intergenic |
| CAAATGCAACTTGAGCATTG+AGG | 0.550173 | 4.1:-37508276 | None:intergenic |
| ATTAAGACATTTCCAGTCAA+CGG | 0.553778 | 4.1:+37508778 | MS.gene67377:CDS |
| TATATAGCAAGTTCAGTGGA+AGG | 0.554582 | 4.1:+37508595 | MS.gene67377:CDS |
| CCGTTGTTGTTATTGTTCTG+TGG | 0.560255 | 4.1:-37508340 | None:intergenic |
| GAACACCGTTGTTTAGAGGA+AGG | 0.560878 | 4.1:-37508318 | None:intergenic |
| AATATCAGTACCGGTTGTTG+TGG | 0.565547 | 4.1:-37508155 | None:intergenic |
| ATAAACATTATTGCTTTGAG+GGG | 0.576173 | 4.1:-37507992 | None:intergenic |
| TATTGCTTTGAGGGGCATAG+TGG | 0.580879 | 4.1:-37507984 | None:intergenic |
| CCACTGAGTCCTGTTAGGAA+AGG | 0.582525 | 4.1:-37508385 | None:intergenic |
| TGAGTCCTGTTAGGAAAGGA+AGG | 0.583798 | 4.1:-37508381 | None:intergenic |
| GAATATGAATCAGATACCGC+AGG | 0.584877 | 4.1:+37508465 | MS.gene67377:CDS |
| TCTGATTCATATTCGTCACT+GGG | 0.589926 | 4.1:-37508456 | None:intergenic |
| GGAAGGAACAAGTCAAGTAA+TGG | 0.591485 | 4.1:+37508612 | MS.gene67377:CDS |
| TCACAACTTGCAATCATTGG+AGG | 0.595719 | 4.1:+37508718 | MS.gene67377:CDS |
| AAGTTGTGGAAGTGACTGTA+AGG | 0.597151 | 4.1:-37508027 | None:intergenic |
| CTGATCGGGAATATCAGTAC+CGG | 0.601781 | 4.1:-37508164 | None:intergenic |
| GAGAATTCGACTTGAAGTTG+TGG | 0.609406 | 4.1:-37508041 | None:intergenic |
| ACAGGACTCAGTGGAAACAC+AGG | 0.641402 | 4.1:+37508394 | MS.gene67377:CDS |
| GGTCAACAACATAACACTGA+CGG | 0.641585 | 4.1:+37508799 | MS.gene67377:CDS |
| GGATTAGTTGGAAAAGCACA+AGG | 0.642418 | 4.1:+37508568 | MS.gene67377:CDS |
| CCTTTCCTAACAGGACTCAG+TGG | 0.645694 | 4.1:+37508385 | MS.gene67377:CDS |
| TTCATGCATGACATTCTAGG+CGG | 0.662932 | 4.1:+37508205 | MS.gene67377:CDS |
| CCACAGAACAATAACAACAA+CGG | 0.678132 | 4.1:+37508340 | MS.gene67377:CDS |
| TCCTGCACCGTAGTTCCCTG+CGG | 0.684170 | 4.1:-37508481 | None:intergenic |
| GCAAACCTTCCTCTAAACAA+CGG | 0.694285 | 4.1:+37508313 | MS.gene67377:CDS |
| TTTGATGATGAACTGACAGA+AGG | 0.695500 | 4.1:+37508529 | MS.gene67377:CDS |
| AATATGAATCAGATACCGCA+GGG | 0.700296 | 4.1:+37508466 | MS.gene67377:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTCAATAACAATAATAAT+GGG | + | chr4.1:37508422-37508441 | MS.gene67377:CDS | 15.0% |
| !! | GTGTTCAATAACAATAATAA+TGG | + | chr4.1:37508421-37508440 | MS.gene67377:CDS | 20.0% |
| ! | CATAAACATTATTGCTTTGA+GGG | - | chr4.1:37507996-37508015 | None:intergenic | 25.0% |
| !! | ATAAACATTATTGCTTTGAG+GGG | - | chr4.1:37507995-37508014 | None:intergenic | 25.0% |
| !! | ATTTTATATAGCAAGTTCAG+TGG | + | chr4.1:37508591-37508610 | MS.gene67377:CDS | 25.0% |
| AGCAATAATGTTTATGGCAA+TGG | + | chr4.1:37508000-37508019 | MS.gene67377:CDS | 30.0% | |
| ATTAAGACATTTCCAGTCAA+CGG | + | chr4.1:37508778-37508797 | MS.gene67377:CDS | 30.0% | |
| CCATAAACATTATTGCTTTG+AGG | - | chr4.1:37507997-37508016 | None:intergenic | 30.0% | |
| CCTCAAAGCAATAATGTTTA+TGG | + | chr4.1:37507994-37508013 | MS.gene67377:CDS | 30.0% | |
| ! | TTTTTCATGCATGACATTCT+AGG | + | chr4.1:37508202-37508221 | MS.gene67377:CDS | 30.0% |
| AATAGGAAAGATAGGCAGTA+AGG | - | chr4.1:37508843-37508862 | None:intergenic | 35.0% | |
| AATATGAATCAGATACCGCA+GGG | + | chr4.1:37508466-37508485 | MS.gene67377:CDS | 35.0% | |
| ACTGCAAAGTTTGAAGAGAA+TGG | + | chr4.1:37508640-37508659 | MS.gene67377:CDS | 35.0% | |
| ATCTGATTCATATTCGTCAC+TGG | - | chr4.1:37508460-37508479 | None:intergenic | 35.0% | |
| CAATCACAACTTGCAATCAT+TGG | + | chr4.1:37508715-37508734 | MS.gene67377:CDS | 35.0% | |
| CCACAGAACAATAACAACAA+CGG | + | chr4.1:37508340-37508359 | MS.gene67377:CDS | 35.0% | |
| TATATAGCAAGTTCAGTGGA+AGG | + | chr4.1:37508595-37508614 | MS.gene67377:CDS | 35.0% | |
| TCTGATTCATATTCGTCACT+GGG | - | chr4.1:37508459-37508478 | None:intergenic | 35.0% | |
| ! | GGAAAGTATGTGAATGCTAA+TGG | + | chr4.1:37508745-37508764 | MS.gene67377:CDS | 35.0% |
| !! | AAATGCAACTTGAGCATTGA+GGG | - | chr4.1:37508278-37508297 | None:intergenic | 35.0% |
| !! | TTTGATGATGAACTGACAGA+AGG | + | chr4.1:37508529-37508548 | MS.gene67377:CDS | 35.0% |
| AACAACCTTCCTTTCCTAAC+AGG | + | chr4.1:37508376-37508395 | MS.gene67377:CDS | 40.0% | |
| AAGTTGTGGAAGTGACTGTA+AGG | - | chr4.1:37508030-37508049 | None:intergenic | 40.0% | |
| GAAGATAGTCTCAGCTTCTT+TGG | + | chr4.1:37508667-37508686 | MS.gene67377:CDS | 40.0% | |
| GAATATGAATCAGATACCGC+AGG | + | chr4.1:37508465-37508484 | MS.gene67377:CDS | 40.0% | |
| GACTCTGCAGAATCAATAAC+TGG | - | chr4.1:37508091-37508110 | None:intergenic | 40.0% | |
| GCAAACCTTCCTCTAAACAA+CGG | + | chr4.1:37508313-37508332 | MS.gene67377:CDS | 40.0% | |
| GCATGAAAAACGATAGTGTG+TGG | - | chr4.1:37508192-37508211 | None:intergenic | 40.0% | |
| GGAAGGAACAAGTCAAGTAA+TGG | + | chr4.1:37508612-37508631 | MS.gene67377:CDS | 40.0% | |
| GGTCAACAACATAACACTGA+CGG | + | chr4.1:37508799-37508818 | MS.gene67377:CDS | 40.0% | |
| GTTGCATTTGCAAAGCCAAA+TGG | + | chr4.1:37508289-37508308 | MS.gene67377:CDS | 40.0% | |
| TCACAACTTGCAATCATTGG+AGG | + | chr4.1:37508718-37508737 | MS.gene67377:CDS | 40.0% | |
| TTATGTTGTTGACCGTTGAC+TGG | - | chr4.1:37508793-37508812 | None:intergenic | 40.0% | |
| TTCATGCATGACATTCTAGG+CGG | + | chr4.1:37508205-37508224 | MS.gene67377:CDS | 40.0% | |
| ! | CAAATGCAACTTGAGCATTG+AGG | - | chr4.1:37508279-37508298 | None:intergenic | 40.0% |
| ! | CCGTTGTTGTTATTGTTCTG+TGG | - | chr4.1:37508343-37508362 | None:intergenic | 40.0% |
| ! | GAATCAATAACTGGCTCTTC+TGG | - | chr4.1:37508082-37508101 | None:intergenic | 40.0% |
| ! | GAGAATTCGACTTGAAGTTG+TGG | - | chr4.1:37508044-37508063 | None:intergenic | 40.0% |
| ! | GTGAAACTTGTGTTGTTCTG+TGG | - | chr4.1:37508696-37508715 | None:intergenic | 40.0% |
| !! | AATATCAGTACCGGTTGTTG+TGG | - | chr4.1:37508158-37508177 | None:intergenic | 40.0% |
| !! | GGATTAGTTGGAAAAGCACA+AGG | + | chr4.1:37508568-37508587 | MS.gene67377:CDS | 40.0% |
| ACTGACAGAAGGTGAAGAGT+TGG | + | chr4.1:37508540-37508559 | MS.gene67377:CDS | 45.0% | |
| AGAGGAAGGTTTGCACCATT+TGG | - | chr4.1:37508307-37508326 | None:intergenic | 45.0% | |
| CTGACAGAAGGTGAAGAGTT+GGG | + | chr4.1:37508541-37508560 | MS.gene67377:CDS | 45.0% | |
| CTGATCGGGAATATCAGTAC+CGG | - | chr4.1:37508167-37508186 | None:intergenic | 45.0% | |
| CTTGCAATCATTGGAGGAAC+TGG | + | chr4.1:37508724-37508743 | MS.gene67377:CDS | 45.0% | |
| GAACACCGTTGTTTAGAGGA+AGG | - | chr4.1:37508321-37508340 | None:intergenic | 45.0% | |
| GACAGGAGTCGTTACAAATC+CGG | + | chr4.1:37508252-37508271 | MS.gene67377:CDS | 45.0% | |
| TGAGTCCTGTTAGGAAAGGA+AGG | - | chr4.1:37508384-37508403 | None:intergenic | 45.0% | |
| TGTGGAACACCGTTGTTTAG+AGG | - | chr4.1:37508325-37508344 | None:intergenic | 45.0% | |
| TGTTTCCACTGAGTCCTGTT+AGG | - | chr4.1:37508393-37508412 | None:intergenic | 45.0% | |
| ! | GAGTTGGGATCAGGATTAGT+TGG | + | chr4.1:37508556-37508575 | MS.gene67377:CDS | 45.0% |
| !! | TATTGCTTTGAGGGGCATAG+TGG | - | chr4.1:37507987-37508006 | None:intergenic | 45.0% |
| ACAGGACTCAGTGGAAACAC+AGG | + | chr4.1:37508394-37508413 | MS.gene67377:CDS | 50.0% | |
| CCAACAACAGCCACAACAAC+CGG | + | chr4.1:37508145-37508164 | MS.gene67377:CDS | 50.0% | |
| CCACTGAGTCCTGTTAGGAA+AGG | - | chr4.1:37508388-37508407 | None:intergenic | 50.0% | |
| CCTTTCCTAACAGGACTCAG+TGG | + | chr4.1:37508385-37508404 | MS.gene67377:CDS | 50.0% | |
| CGGTTGTTGTGGCTGTTGTT+GGG | - | chr4.1:37508147-37508166 | None:intergenic | 50.0% | |
| GAAGGTGAAGAGTTGGGATC+AGG | + | chr4.1:37508547-37508566 | MS.gene67377:CDS | 50.0% | |
| GGTTGTTGTGGCTGTTGTTG+GGG | - | chr4.1:37508146-37508165 | None:intergenic | 50.0% | |
| TCAGATACCGCAGGGAACTA+CGG | + | chr4.1:37508474-37508493 | MS.gene67377:CDS | 50.0% | |
| !! | CACTGCTCTTGCTGTTGGAT+TGG | - | chr4.1:37508233-37508252 | None:intergenic | 50.0% |
| !! | CGATAGTGTGTGGTGCTGAT+CGG | - | chr4.1:37508182-37508201 | None:intergenic | 50.0% |
| !! | GATAGTGTGTGGTGCTGATC+GGG | - | chr4.1:37508181-37508200 | None:intergenic | 50.0% |
| ACGGTGCAGGAGCTGATGTT+TGG | + | chr4.1:37508493-37508512 | MS.gene67377:CDS | 55.0% | |
| CCAACAGCAAGAGCAGTGAC+AGG | + | chr4.1:37508235-37508254 | MS.gene67377:CDS | 55.0% | |
| CCGGTTGTTGTGGCTGTTGT+TGG | - | chr4.1:37508148-37508167 | None:intergenic | 55.0% | |
| TGTTGTGGCTGTTGTTGGGG+CGG | - | chr4.1:37508143-37508162 | None:intergenic | 55.0% | |
| ! | CCTGTCACTGCTCTTGCTGT+TGG | - | chr4.1:37508238-37508257 | None:intergenic | 55.0% |
| !! | GCAACTTGAGCATTGAGGGC+CGG | - | chr4.1:37508274-37508293 | None:intergenic | 55.0% |
| CTGTTGTTGGGGCGGGAAGT+GGG | - | chr4.1:37508135-37508154 | None:intergenic | 60.0% | |
| GGGGAGAAGGGCAGAAACAG+GGG | - | chr4.1:37508113-37508132 | None:intergenic | 60.0% | |
| GGGGGAGAAGGGCAGAAACA+GGG | - | chr4.1:37508114-37508133 | None:intergenic | 60.0% | |
| GTTGTGGCTGTTGTTGGGGC+GGG | - | chr4.1:37508142-37508161 | None:intergenic | 60.0% | |
| TCCTGCACCGTAGTTCCCTG+CGG | - | chr4.1:37508484-37508503 | None:intergenic | 60.0% | |
| TGTTGTTGGGGCGGGAAGTG+GGG | - | chr4.1:37508134-37508153 | None:intergenic | 60.0% | |
| ACCGCAGGGAACTACGGTGC+AGG | + | chr4.1:37508480-37508499 | MS.gene67377:CDS | 65.0% | |
| GCTGTTGTTGGGGCGGGAAG+TGG | - | chr4.1:37508136-37508155 | None:intergenic | 65.0% | |
| GGGGGGAGAAGGGCAGAAAC+AGG | - | chr4.1:37508115-37508134 | None:intergenic | 65.0% | |
| GTTGTTGGGGCGGGAAGTGG+GGG | - | chr4.1:37508133-37508152 | None:intergenic | 65.0% | |
| TTGTTGGGGCGGGAAGTGGG+GGG | - | chr4.1:37508132-37508151 | None:intergenic | 65.0% | |
| GGCGGGAAGTGGGGGGAGAA+GGG | - | chr4.1:37508125-37508144 | None:intergenic | 70.0% | |
| GGGCGGGAAGTGGGGGGAGA+AGG | - | chr4.1:37508126-37508145 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 37507959 | 37508864 | 37507959 | ID=MS.gene67377 |
| chr4.1 | mRNA | 37507959 | 37508864 | 37507959 | ID=MS.gene67377.t1;Parent=MS.gene67377 |
| chr4.1 | exon | 37507959 | 37508864 | 37507959 | ID=MS.gene67377.t1.exon1;Parent=MS.gene67377.t1 |
| chr4.1 | CDS | 37507959 | 37508864 | 37507959 | ID=cds.MS.gene67377.t1;Parent=MS.gene67377.t1 |
| Gene Sequence |
| Protein sequence |
