Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68299.t1 | XP_003613352.1 | 93.7 | 223 | 14 | 0 | 1 | 223 | 1 | 223 | 1.80E-104 | 390.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68299.t1 | G7K465 | 93.7 | 223 | 14 | 0 | 1 | 223 | 1 | 223 | 1.3e-104 | 390.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene68299 | 0.829144 | 6.07E-55 | -1.69E-46 |
| MS.gene049427 | MS.gene68299 | 0.803265 | 3.79E-49 | -1.69E-46 |
| MS.gene050099 | MS.gene68299 | 0.810418 | 1.16E-50 | -1.69E-46 |
| MS.gene051255 | MS.gene68299 | 0.835048 | 2.11E-56 | -1.69E-46 |
| MS.gene051858 | MS.gene68299 | 0.817862 | 2.65E-52 | -1.69E-46 |
| MS.gene052271 | MS.gene68299 | 0.800537 | 1.38E-48 | -1.69E-46 |
| MS.gene052326 | MS.gene68299 | 0.808948 | 2.41E-50 | -1.69E-46 |
| MS.gene054802 | MS.gene68299 | 0.833802 | 4.33E-56 | -1.69E-46 |
| MS.gene054803 | MS.gene68299 | 0.836356 | 9.82E-57 | -1.69E-46 |
| MS.gene054804 | MS.gene68299 | 0.833384 | 5.50E-56 | -1.69E-46 |
| MS.gene055390 | MS.gene68299 | 0.801997 | 6.91E-49 | -1.69E-46 |
| MS.gene056410 | MS.gene68299 | 0.842956 | 1.88E-58 | -1.69E-46 |
| MS.gene056452 | MS.gene68299 | 0.84629 | 2.38E-59 | -1.69E-46 |
| MS.gene056611 | MS.gene68299 | 0.805526 | 1.28E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene68299 | 0.800045 | 1.73E-48 | -1.69E-46 |
| MS.gene058019 | MS.gene68299 | 0.805188 | 1.51E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene68299 | 0.8011 | 1.06E-48 | -1.69E-46 |
| MS.gene058660 | MS.gene68299 | 0.81288 | 3.39E-51 | -1.69E-46 |
| MS.gene058993 | MS.gene68299 | 0.82737 | 1.62E-54 | -1.69E-46 |
| MS.gene059536 | MS.gene68299 | 0.810264 | 1.26E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene68299 | 0.806552 | 7.78E-50 | -1.69E-46 |
| MS.gene059902 | MS.gene68299 | 0.816896 | 4.36E-52 | -1.69E-46 |
| MS.gene059960 | MS.gene68299 | 0.831737 | 1.41E-55 | -1.69E-46 |
| MS.gene060193 | MS.gene68299 | 0.858809 | 6.39E-63 | -1.69E-46 |
| MS.gene061200 | MS.gene68299 | 0.838214 | 3.28E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene44409 | MS.gene68299 | PPI |
| MS.gene029233 | MS.gene68299 | PPI |
| MS.gene44410 | MS.gene68299 | PPI |
| MS.gene56742 | MS.gene68299 | PPI |
| MS.gene05395 | MS.gene68299 | PPI |
| MS.gene78297 | MS.gene68299 | PPI |
| MS.gene042404 | MS.gene68299 | PPI |
| MS.gene44411 | MS.gene68299 | PPI |
| MS.gene51249 | MS.gene68299 | PPI |
| MS.gene68299 | MS.gene20554 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68299.t1 | MTR_5g035590 | 97.030 | 606 | 18 | 0 | 1 | 606 | 1 | 606 | 0.0 | 1192 |
| MS.gene68299.t1 | MTR_5g035590 | 98.601 | 429 | 6 | 0 | 178 | 606 | 1 | 429 | 0.0 | 853 |
| MS.gene68299.t1 | MTR_5g035590 | 31.638 | 177 | 120 | 1 | 166 | 341 | 214 | 390 | 2.55e-17 | 85.1 |
| MS.gene68299.t1 | MTR_1g105040 | 27.509 | 269 | 195 | 0 | 204 | 472 | 217 | 485 | 7.00e-24 | 106 |
| MS.gene68299.t1 | MTR_1g105040 | 26.441 | 295 | 206 | 3 | 173 | 466 | 214 | 498 | 6.34e-22 | 100 |
| MS.gene68299.t1 | MTR_1g105040 | 27.213 | 305 | 209 | 5 | 229 | 524 | 181 | 481 | 1.76e-19 | 92.4 |
| MS.gene68299.t1 | MTR_1g105040 | 25.667 | 300 | 185 | 5 | 311 | 604 | 179 | 446 | 1.03e-12 | 71.2 |
| MS.gene68299.t1 | MTR_1g072250 | 26.316 | 399 | 256 | 7 | 153 | 543 | 134 | 502 | 2.15e-22 | 101 |
| MS.gene68299.t1 | MTR_1g072250 | 25.397 | 315 | 231 | 3 | 156 | 467 | 197 | 510 | 4.97e-15 | 78.6 |
| MS.gene68299.t1 | MTR_1g072250 | 25.455 | 275 | 173 | 4 | 329 | 603 | 205 | 447 | 2.04e-11 | 67.0 |
| MS.gene68299.t1 | MTR_3g055970 | 24.402 | 418 | 261 | 16 | 145 | 524 | 60 | 460 | 1.01e-12 | 72.0 |
| MS.gene68299.t1 | MTR_3g055970 | 23.620 | 326 | 228 | 8 | 254 | 568 | 73 | 388 | 4.55e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68299.t1 | AT1G10510 | 68.679 | 613 | 174 | 5 | 2 | 606 | 3 | 605 | 0.0 | 851 |
| MS.gene68299.t1 | AT3G63130 | 27.372 | 274 | 199 | 0 | 204 | 477 | 214 | 487 | 1.40e-22 | 102 |
| MS.gene68299.t1 | AT3G63130 | 26.374 | 364 | 246 | 7 | 156 | 505 | 132 | 487 | 7.81e-22 | 99.8 |
| MS.gene68299.t1 | AT3G63130 | 27.915 | 283 | 199 | 4 | 308 | 589 | 206 | 484 | 9.61e-20 | 93.6 |
| MS.gene68299.t1 | AT3G63130 | 25.839 | 298 | 217 | 3 | 156 | 450 | 192 | 488 | 1.98e-18 | 89.4 |
| MS.gene68299.t1 | AT3G63130 | 27.372 | 274 | 199 | 0 | 204 | 477 | 214 | 487 | 1.40e-22 | 102 |
| MS.gene68299.t1 | AT3G63130 | 26.374 | 364 | 246 | 7 | 156 | 505 | 132 | 487 | 7.81e-22 | 99.8 |
| MS.gene68299.t1 | AT3G63130 | 27.915 | 283 | 199 | 4 | 308 | 589 | 206 | 484 | 9.61e-20 | 93.6 |
| MS.gene68299.t1 | AT3G63130 | 25.839 | 298 | 217 | 3 | 156 | 450 | 192 | 488 | 1.98e-18 | 89.4 |
| MS.gene68299.t1 | AT5G19320 | 26.182 | 275 | 202 | 1 | 204 | 477 | 219 | 493 | 2.19e-20 | 95.5 |
| MS.gene68299.t1 | AT5G19320 | 27.301 | 326 | 205 | 6 | 219 | 542 | 207 | 502 | 4.22e-17 | 85.1 |
| MS.gene68299.t1 | AT5G19320 | 24.232 | 293 | 183 | 5 | 329 | 589 | 205 | 490 | 8.01e-12 | 68.6 |
| MS.gene68299.t1 | AT5G19320 | 26.182 | 275 | 202 | 1 | 204 | 477 | 219 | 493 | 2.19e-20 | 95.5 |
| MS.gene68299.t1 | AT5G19320 | 27.301 | 326 | 205 | 6 | 219 | 542 | 207 | 502 | 4.22e-17 | 85.1 |
| MS.gene68299.t1 | AT5G19320 | 24.232 | 293 | 183 | 5 | 329 | 589 | 205 | 490 | 8.01e-12 | 68.6 |
| MS.gene68299.t1 | AT5G55540 | 23.775 | 408 | 259 | 11 | 163 | 524 | 63 | 464 | 9.44e-14 | 75.5 |
| MS.gene68299.t1 | AT5G55540 | 23.775 | 408 | 259 | 11 | 163 | 524 | 63 | 464 | 9.80e-14 | 75.5 |
Find 132 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTAATTTCCTTACCAAATT+TGG | 0.106216 | 5.2:-26152412 | MS.gene68299:CDS |
| CCTGGCACCAACCAAGTTTA+AGG | 0.149470 | 5.2:+26152929 | None:intergenic |
| GGCAACTATGGTGGTGCTTT+GGG | 0.192596 | 5.2:-26154722 | MS.gene68299:CDS |
| ATTTAGGATTTAATGAAATA+AGG | 0.199745 | 5.2:-26152588 | MS.gene68299:CDS |
| CTGAAGACTCTTGATCTTTC+AGG | 0.215065 | 5.2:-26156621 | MS.gene68299:CDS |
| AAATAGTACCTGACCAAATT+TGG | 0.219290 | 5.2:+26152399 | None:intergenic |
| GCCAAGGCCTTGGCTCCATC+TGG | 0.233421 | 5.2:+26152985 | None:intergenic |
| GTCGCAGACTTTGATTTCTT+TGG | 0.244293 | 5.2:+26159759 | None:intergenic |
| GCTCTAACCTCGCTAGATTT+AGG | 0.247395 | 5.2:-26152604 | MS.gene68299:CDS |
| CGCCGAAGACCGTTTGGTTT+AGG | 0.260455 | 5.2:-26161360 | MS.gene68299:CDS |
| CGAACTTCGACACGTGCTTC+TGG | 0.268208 | 5.2:-26161303 | MS.gene68299:CDS |
| TGGCAACTATGGTGGTGCTT+TGG | 0.272094 | 5.2:-26154723 | MS.gene68299:CDS |
| GCTTACAGTTATCTGGAAAT+TGG | 0.290180 | 5.2:-26159805 | MS.gene68299:intron |
| CGCCGGTTGCAATCGCTTGC+CGG | 0.291440 | 5.2:-26161420 | MS.gene68299:CDS |
| TTTAGGATTTAATGAAATAA+GGG | 0.296450 | 5.2:-26152587 | MS.gene68299:intron |
| CATTTGCACGGAAATTCTAT+TGG | 0.306066 | 5.2:-26154336 | MS.gene68299:CDS |
| AACGAATTGGACGGCGGTTC+CGG | 0.307180 | 5.2:+26161401 | None:intergenic |
| TGTAAATGTTCAACCATAAC+AGG | 0.310031 | 5.2:+26154078 | None:intergenic |
| TTGAGGGCAACAAGTCTATA+AGG | 0.312274 | 5.2:-26154676 | MS.gene68299:CDS |
| AACTTACTTGCGGCGGTTGC+GGG | 0.315570 | 5.2:+26161536 | None:intergenic |
| CAAATTTGTTGTCTCAGCTT+GGG | 0.325903 | 5.2:-26159683 | MS.gene68299:CDS |
| TTTGATTCAAGTGGCAACTA+TGG | 0.329306 | 5.2:-26154734 | MS.gene68299:intron |
| GCGACGAATGTTGCTCCGTT+TGG | 0.334315 | 5.2:-26161213 | MS.gene68299:CDS |
| AAAGGTGCTTTCTATGTTGC+TGG | 0.354044 | 5.2:-26154122 | MS.gene68299:CDS |
| CTTGGCTCCATCTGGGCCAA+TGG | 0.354591 | 5.2:+26152993 | None:intergenic |
| TTCTAGAAGCTTCGTGGTTA+AGG | 0.356055 | 5.2:-26161331 | MS.gene68299:CDS |
| GATGTGGCAGGGCGCAATTT+TGG | 0.358772 | 5.2:-26158920 | MS.gene68299:intron |
| TAACTTACTTGCGGCGGTTG+CGG | 0.363077 | 5.2:+26161535 | None:intergenic |
| GAGGTAGGGGTTTACAAGTC+TGG | 0.364818 | 5.2:-26154986 | MS.gene68299:intron |
| CTGAATCGCCGAAGACCGTT+TGG | 0.365424 | 5.2:-26161366 | MS.gene68299:CDS |
| CCCAGATGGAGCCAAGGCCT+TGG | 0.365753 | 5.2:-26152986 | MS.gene68299:CDS |
| TCAGCTTGGGGCGACGATTG+AGG | 0.371039 | 5.2:-26159670 | MS.gene68299:CDS |
| ACAAATTTGTTGTCTCAGCT+TGG | 0.371288 | 5.2:-26159684 | MS.gene68299:CDS |
| TTGGCTCCATCTGGGCCAAT+GGG | 0.371339 | 5.2:+26152994 | None:intergenic |
| TAATACCACAATATCAGTTC+TGG | 0.377304 | 5.2:-26152785 | MS.gene68299:CDS |
| CATTCAGTTTCTGTTTAGAT+TGG | 0.379274 | 5.2:+26159646 | None:intergenic |
| CAGCTTGGGGCGACGATTGA+GGG | 0.381881 | 5.2:-26159669 | MS.gene68299:CDS |
| CTGGCACCAACCAAGTTTAA+GGG | 0.383995 | 5.2:+26152930 | None:intergenic |
| AAAAGATCAAAAGCCTGTTA+TGG | 0.385142 | 5.2:-26154091 | MS.gene68299:CDS |
| GTCAATAACGACATTAGATA+TGG | 0.393048 | 5.2:-26153286 | MS.gene68299:intron |
| TCATGTTGTTGTTAAGTTCA+AGG | 0.398037 | 5.2:+26155109 | None:intergenic |
| CAGATGCTTTAAAGGAAAAT+CGG | 0.404566 | 5.2:-26153308 | MS.gene68299:CDS |
| TATAACTTCGGCCAAGGCCT+TGG | 0.408081 | 5.2:+26152975 | None:intergenic |
| GACTTTGATTTCTTTGGAGT+TGG | 0.413992 | 5.2:+26159765 | None:intergenic |
| CGACACGTGCTTCTGGTTCT+CGG | 0.421744 | 5.2:-26161296 | MS.gene68299:CDS |
| GCAACTATGGTGGTGCTTTG+GGG | 0.423650 | 5.2:-26154721 | MS.gene68299:CDS |
| TTCCGGCAAGCGATTGCAAC+CGG | 0.432702 | 5.2:+26161418 | None:intergenic |
| ATTGCAGGGTGCATTGTGTC+TGG | 0.434962 | 5.2:-26152653 | MS.gene68299:intron |
| GGCAATCCTGTTGGAGATGA+AGG | 0.435902 | 5.2:-26156600 | MS.gene68299:CDS |
| TCAGCTAAACAGTGCTGACT+TGG | 0.441759 | 5.2:-26155486 | MS.gene68299:CDS |
| AGACCGTTTGGTTTAGGAGC+AGG | 0.442226 | 5.2:-26161354 | MS.gene68299:CDS |
| TTTGCTCCTTCATCTCCAAC+AGG | 0.445792 | 5.2:+26156594 | None:intergenic |
| GGAATTCGTTCTTTGATGAC+TGG | 0.448428 | 5.2:-26154306 | MS.gene68299:CDS |
| CTTATGCAGATAGGAGCAAA+AGG | 0.448593 | 5.2:-26152838 | MS.gene68299:intron |
| TCAATCCTTGTGAAGCAGAC+TGG | 0.451465 | 5.2:+26159727 | None:intergenic |
| CAAGCGATTGCAACCGGCGG+CGG | 0.452096 | 5.2:+26161424 | None:intergenic |
| CTCCTAAACCAAACGGTCTT+CGG | 0.454472 | 5.2:+26161358 | None:intergenic |
| TTTCCTTACCAAATTTGGTC+AGG | 0.455058 | 5.2:-26152407 | MS.gene68299:intron |
| TGCAACGCTTTCAGTTGCTT+CGG | 0.455401 | 5.2:-26161247 | MS.gene68299:CDS |
| CTGCTTCACAAGGATTGAAA+TGG | 0.456014 | 5.2:-26159722 | MS.gene68299:CDS |
| GGAAATAACATTCATGCTGT+TGG | 0.457502 | 5.2:-26153168 | MS.gene68299:CDS |
| GGAAATTCTATTGGAGATGA+AGG | 0.458044 | 5.2:-26154327 | MS.gene68299:CDS |
| CCTTAAACTTGGTTGGTGCC+AGG | 0.465386 | 5.2:-26152929 | MS.gene68299:intron |
| GTTCTGGACTTACGAGCAAA+TGG | 0.472854 | 5.2:-26152769 | MS.gene68299:CDS |
| CCAAGGCCTTGGCTCCATCT+GGG | 0.475782 | 5.2:+26152986 | None:intergenic |
| ATTCTTTCTTGCGGAGAGCT+TGG | 0.477259 | 5.2:-26158885 | MS.gene68299:CDS |
| GAGAGTTTATCGCGAGTCTC+AGG | 0.483584 | 5.2:-26161274 | MS.gene68299:CDS |
| TGTAGCTTCGTCTCCGCCGC+CGG | 0.485091 | 5.2:-26161437 | MS.gene68299:intron |
| CAACTATGGTGGTGCTTTGG+GGG | 0.490150 | 5.2:-26154720 | MS.gene68299:CDS |
| GAACTTAGTTATAATCCCAT+TGG | 0.491304 | 5.2:-26153009 | MS.gene68299:CDS |
| GCAAATGGAATAACTGCTGC+TGG | 0.492022 | 5.2:-26156684 | MS.gene68299:CDS |
| GAGTCGGAAGGATAACGAAT+TGG | 0.496132 | 5.2:+26161388 | None:intergenic |
| TCCATGGAACTTTATAACTT+CGG | 0.498470 | 5.2:+26152963 | None:intergenic |
| AACAACTCATTGACAGCTAA+AGG | 0.500253 | 5.2:-26154140 | MS.gene68299:CDS |
| GCCGAAGTTATAAAGTTCCA+TGG | 0.510009 | 5.2:-26152964 | MS.gene68299:CDS |
| GTGTGAGTAAAGAGAGAGAG+TGG | 0.511008 | 5.2:+26161558 | None:intergenic |
| AGTGGAAGTGTTTAAAGACA+TGG | 0.513176 | 5.2:+26161576 | None:intergenic |
| CAGCTAAACAGTGCTGACTT+GGG | 0.514024 | 5.2:-26155485 | MS.gene68299:CDS |
| ATCTTTCAAAACTTTAGCAA+CGG | 0.514052 | 5.2:+26153137 | None:intergenic |
| TGCATTGGCTAAAGCACTTG+AGG | 0.518489 | 5.2:-26154693 | MS.gene68299:CDS |
| TATAATCCCATTGGCCCAGA+TGG | 0.518540 | 5.2:-26153000 | MS.gene68299:CDS |
| TAGGGGTTTACAAGTCTGGC+TGG | 0.518877 | 5.2:-26154982 | MS.gene68299:CDS |
| AAGGTGCTTTCTATGTTGCT+GGG | 0.521393 | 5.2:-26154121 | MS.gene68299:CDS |
| GTTTAGCTGAAGCTTCTCAA+TGG | 0.527253 | 5.2:+26155499 | None:intergenic |
| TCGTCAAACTCACAGGATGA+TGG | 0.528672 | 5.2:-26152502 | MS.gene68299:intron |
| TACAGTTATCTGGAAATTGG+TGG | 0.530008 | 5.2:-26159802 | MS.gene68299:intron |
| GGAGAGCTTGGCATTTAACC+AGG | 0.535384 | 5.2:-26158873 | MS.gene68299:intron |
| AACATTCATGCTGTTGGAGT+TGG | 0.536123 | 5.2:-26153162 | MS.gene68299:CDS |
| AAATTTGTTGTCTCAGCTTG+GGG | 0.537078 | 5.2:-26159682 | MS.gene68299:CDS |
| GTGTTCTTAGCACTTACTAT+CGG | 0.538286 | 5.2:-26161189 | MS.gene68299:intron |
| GATCTTTCAGGCAATCCTGT+TGG | 0.539593 | 5.2:-26156609 | MS.gene68299:CDS |
| GCATTGGCTAAAGCACTTGA+GGG | 0.543471 | 5.2:-26154692 | MS.gene68299:CDS |
| AGCTAAACAGTGCTGACTTG+GGG | 0.548080 | 5.2:-26155484 | MS.gene68299:CDS |
| TGAAGGATTATTCTTTCTTG+CGG | 0.550404 | 5.2:-26158894 | MS.gene68299:CDS |
| AACATTTACATGAATGACAT+TGG | 0.551290 | 5.2:-26154065 | MS.gene68299:CDS |
| AAACTTACACTTCTAGACAT+AGG | 0.558147 | 5.2:-26154164 | MS.gene68299:CDS |
| TTATGCAGATAGGAGCAAAA+GGG | 0.560047 | 5.2:-26152837 | MS.gene68299:intron |
| TGAGGGCAACAAGTCTATAA+GGG | 0.565077 | 5.2:-26154675 | MS.gene68299:intron |
| GTACCTGACCAAATTTGGTA+AGG | 0.565710 | 5.2:+26152404 | None:intergenic |
| AGCAGGTTCTAGAAGCTTCG+TGG | 0.572221 | 5.2:-26161337 | MS.gene68299:CDS |
| AGTGCTAAGAACACTCCAAA+CGG | 0.573474 | 5.2:+26161198 | None:intergenic |
| TAGCTGAAGCTTCTCAATGG+TGG | 0.574007 | 5.2:+26155502 | None:intergenic |
| GAACCTGCTCCTAAACCAAA+CGG | 0.577145 | 5.2:+26161351 | None:intergenic |
| TGTGTTTGAGATGACTGAAA+AGG | 0.586074 | 5.2:-26152260 | MS.gene68299:CDS |
| CATTGGCCCAGATGGAGCCA+AGG | 0.586640 | 5.2:-26152992 | MS.gene68299:CDS |
| ATTAAATCCTAAATCTAGCG+AGG | 0.589016 | 5.2:+26152597 | None:intergenic |
| GAACTTTATAACTTCGGCCA+AGG | 0.589359 | 5.2:+26152969 | None:intergenic |
| GCAAGCCAGTCTGCTTCACA+AGG | 0.590388 | 5.2:-26159732 | MS.gene68299:CDS |
| GGTCTTCGGCGATTCAGAGT+CGG | 0.599218 | 5.2:+26161372 | None:intergenic |
| AATGTGAAAACCCTTAAACT+TGG | 0.599464 | 5.2:-26152940 | MS.gene68299:CDS |
| TGAAAACCCTTAAACTTGGT+TGG | 0.600564 | 5.2:-26152936 | MS.gene68299:CDS |
| GATTCAAGTGGCAACTATGG+TGG | 0.615392 | 5.2:-26154731 | MS.gene68299:intron |
| TGTTGGAGATGAAGGAGCAA+AGG | 0.618034 | 5.2:-26156592 | MS.gene68299:intron |
| GTGTCTATGTGACATACTGA+TGG | 0.618276 | 5.2:-26155531 | MS.gene68299:CDS |
| TATGCAGATAGGAGCAAAAG+GGG | 0.628011 | 5.2:-26152836 | MS.gene68299:intron |
| CGGCAAGCGATTGCAACCGG+CGG | 0.628871 | 5.2:+26161421 | None:intergenic |
| TTTCAGTCATCTCAAACACA+TGG | 0.631330 | 5.2:+26152263 | None:intergenic |
| ACTGGATTAACGTCACATAG+AGG | 0.632787 | 5.2:-26154288 | MS.gene68299:intron |
| CATGAATGACATTGGTGATG+AGG | 0.633304 | 5.2:-26154057 | MS.gene68299:intron |
| GCTAAACAGTGCTGACTTGG+GGG | 0.640733 | 5.2:-26155483 | MS.gene68299:CDS |
| AGTTTATCGCGAGTCTCAGG+CGG | 0.642766 | 5.2:-26161271 | MS.gene68299:CDS |
| GCTGTCGCATCTCTAAACAT+TGG | 0.645416 | 5.2:-26152436 | MS.gene68299:CDS |
| CGGAAGGATAACGAATTGGA+CGG | 0.651382 | 5.2:+26161392 | None:intergenic |
| GGACAGGAACTACATTTGCA+CGG | 0.660249 | 5.2:-26154348 | MS.gene68299:intron |
| ATGAGTTTGCTCGAGAACTG+AGG | 0.662789 | 5.2:-26159626 | MS.gene68299:CDS |
| TAAGTCCAGAACTGATATTG+TGG | 0.673601 | 5.2:+26152780 | None:intergenic |
| TTCGGCGATTCAGAGTCGGA+AGG | 0.683412 | 5.2:+26161376 | None:intergenic |
| AGTTAGTAACTTACTTGCGG+CGG | 0.686730 | 5.2:+26161529 | None:intergenic |
| ATATACTATATAGACTGCAG+AGG | 0.689045 | 5.2:-26156721 | MS.gene68299:intron |
| TGTCTATGTGACATACTGAT+GGG | 0.736138 | 5.2:-26155530 | MS.gene68299:CDS |
| AAGGATAACGAATTGGACGG+CGG | 0.749420 | 5.2:+26161395 | None:intergenic |
| AAAAGGGGCAGAGTTCATTG+CGG | 0.749883 | 5.2:-26152821 | MS.gene68299:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 26152240 | 26161596 | 26152240 | ID=MS.gene68299 |
| chr5.2 | mRNA | 26152240 | 26161596 | 26152240 | ID=MS.gene68299.t1;Parent=MS.gene68299 |
| chr5.2 | exon | 26161543 | 26161596 | 26161543 | ID=MS.gene68299.t1.exon1;Parent=MS.gene68299.t1 |
| chr5.2 | CDS | 26161543 | 26161596 | 26161543 | ID=cds.MS.gene68299.t1;Parent=MS.gene68299.t1 |
| chr5.2 | exon | 26161190 | 26161454 | 26161190 | ID=MS.gene68299.t1.exon2;Parent=MS.gene68299.t1 |
| chr5.2 | CDS | 26161190 | 26161454 | 26161190 | ID=cds.MS.gene68299.t1;Parent=MS.gene68299.t1 |
| chr5.2 | exon | 26159601 | 26159819 | 26159601 | ID=MS.gene68299.t1.exon3;Parent=MS.gene68299.t1 |
| chr5.2 | CDS | 26159601 | 26159819 | 26159601 | ID=cds.MS.gene68299.t1;Parent=MS.gene68299.t1 |
| chr5.2 | exon | 26158874 | 26158932 | 26158874 | ID=MS.gene68299.t1.exon4;Parent=MS.gene68299.t1 |
| chr5.2 | CDS | 26158874 | 26158932 | 26158874 | ID=cds.MS.gene68299.t1;Parent=MS.gene68299.t1 |
| chr5.2 | exon | 26156593 | 26156730 | 26156593 | ID=MS.gene68299.t1.exon5;Parent=MS.gene68299.t1 |
| chr5.2 | CDS | 26156593 | 26156730 | 26156593 | ID=cds.MS.gene68299.t1;Parent=MS.gene68299.t1 |
| chr5.2 | exon | 26155478 | 26155552 | 26155478 | ID=MS.gene68299.t1.exon6;Parent=MS.gene68299.t1 |
| chr5.2 | CDS | 26155478 | 26155552 | 26155478 | ID=cds.MS.gene68299.t1;Parent=MS.gene68299.t1 |
| chr5.2 | exon | 26155098 | 26155181 | 26155098 | ID=MS.gene68299.t1.exon7;Parent=MS.gene68299.t1 |
| chr5.2 | CDS | 26155098 | 26155181 | 26155098 | ID=cds.MS.gene68299.t1;Parent=MS.gene68299.t1 |
| chr5.2 | exon | 26154940 | 26155001 | 26154940 | ID=MS.gene68299.t1.exon8;Parent=MS.gene68299.t1 |
| chr5.2 | CDS | 26154940 | 26155001 | 26154940 | ID=cds.MS.gene68299.t1;Parent=MS.gene68299.t1 |
| chr5.2 | exon | 26154676 | 26154745 | 26154676 | ID=MS.gene68299.t1.exon9;Parent=MS.gene68299.t1 |
| chr5.2 | CDS | 26154676 | 26154745 | 26154676 | ID=cds.MS.gene68299.t1;Parent=MS.gene68299.t1 |
| chr5.2 | exon | 26154289 | 26154364 | 26154289 | ID=MS.gene68299.t1.exon10;Parent=MS.gene68299.t1 |
| chr5.2 | CDS | 26154289 | 26154364 | 26154289 | ID=cds.MS.gene68299.t1;Parent=MS.gene68299.t1 |
| chr5.2 | exon | 26154058 | 26154188 | 26154058 | ID=MS.gene68299.t1.exon11;Parent=MS.gene68299.t1 |
| chr5.2 | CDS | 26154058 | 26154188 | 26154058 | ID=cds.MS.gene68299.t1;Parent=MS.gene68299.t1 |
| chr5.2 | exon | 26153287 | 26153346 | 26153287 | ID=MS.gene68299.t1.exon12;Parent=MS.gene68299.t1 |
| chr5.2 | CDS | 26153287 | 26153346 | 26153287 | ID=cds.MS.gene68299.t1;Parent=MS.gene68299.t1 |
| chr5.2 | exon | 26153119 | 26153193 | 26153119 | ID=MS.gene68299.t1.exon13;Parent=MS.gene68299.t1 |
| chr5.2 | CDS | 26153119 | 26153193 | 26153119 | ID=cds.MS.gene68299.t1;Parent=MS.gene68299.t1 |
| chr5.2 | exon | 26152930 | 26153034 | 26152930 | ID=MS.gene68299.t1.exon14;Parent=MS.gene68299.t1 |
| chr5.2 | CDS | 26152930 | 26153034 | 26152930 | ID=cds.MS.gene68299.t1;Parent=MS.gene68299.t1 |
| chr5.2 | exon | 26152756 | 26152851 | 26152756 | ID=MS.gene68299.t1.exon15;Parent=MS.gene68299.t1 |
| chr5.2 | CDS | 26152756 | 26152851 | 26152756 | ID=cds.MS.gene68299.t1;Parent=MS.gene68299.t1 |
| chr5.2 | exon | 26152588 | 26152668 | 26152588 | ID=MS.gene68299.t1.exon16;Parent=MS.gene68299.t1 |
| chr5.2 | CDS | 26152588 | 26152668 | 26152588 | ID=cds.MS.gene68299.t1;Parent=MS.gene68299.t1 |
| chr5.2 | exon | 26152408 | 26152509 | 26152408 | ID=MS.gene68299.t1.exon17;Parent=MS.gene68299.t1 |
| chr5.2 | CDS | 26152408 | 26152509 | 26152408 | ID=cds.MS.gene68299.t1;Parent=MS.gene68299.t1 |
| chr5.2 | exon | 26152240 | 26152308 | 26152240 | ID=MS.gene68299.t1.exon18;Parent=MS.gene68299.t1 |
| chr5.2 | CDS | 26152240 | 26152308 | 26152240 | ID=cds.MS.gene68299.t1;Parent=MS.gene68299.t1 |
| Gene Sequence |
| Protein sequence |
