Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68749.t1 | XP_024635160.1 | 94 | 533 | 26 | 3 | 5 | 534 | 30 | 559 | 1.70E-297 | 1031.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68749.t1 | A0A1P8B8F8 | 36.2 | 469 | 282 | 10 | 64 | 521 | 89 | 551 | 8.9e-85 | 315.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68749.t1 | A0A396J1W7 | 94.0 | 533 | 26 | 3 | 5 | 534 | 30 | 559 | 1.2e-297 | 1031.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050099 | MS.gene68749 | 0.802054 | 6.73E-49 | -1.69E-46 |
| MS.gene060476 | MS.gene68749 | 0.829185 | 5.93E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90963 | MS.gene68749 | PPI |
| MS.gene99993 | MS.gene68749 | PPI |
| MS.gene75410 | MS.gene68749 | PPI |
| MS.gene054660 | MS.gene68749 | PPI |
| MS.gene68749 | MS.gene032541 | PPI |
| MS.gene62099 | MS.gene68749 | PPI |
| MS.gene68749 | MS.gene59021 | PPI |
| MS.gene044959 | MS.gene68749 | PPI |
| MS.gene74061 | MS.gene68749 | PPI |
| MS.gene062453 | MS.gene68749 | PPI |
| MS.gene52090 | MS.gene68749 | PPI |
| MS.gene68749 | MS.gene53185 | PPI |
| MS.gene057723 | MS.gene68749 | PPI |
| MS.gene003507 | MS.gene68749 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68749.t1 | MTR_3g117800 | 94.019 | 535 | 24 | 4 | 4 | 534 | 5 | 535 | 0.0 | 1035 |
| MS.gene68749.t1 | MTR_3g117800 | 97.095 | 482 | 13 | 1 | 53 | 534 | 4 | 484 | 0.0 | 979 |
| MS.gene68749.t1 | MTR_3g117800 | 97.582 | 455 | 10 | 1 | 80 | 534 | 1 | 454 | 0.0 | 931 |
| MS.gene68749.t1 | MTR_4g074070 | 39.630 | 540 | 281 | 11 | 13 | 521 | 22 | 547 | 1.85e-130 | 392 |
| MS.gene68749.t1 | MTR_5g049180 | 38.727 | 550 | 292 | 9 | 13 | 528 | 22 | 560 | 9.45e-130 | 390 |
| MS.gene68749.t1 | MTR_7g024420 | 39.130 | 529 | 280 | 8 | 13 | 510 | 22 | 539 | 4.06e-129 | 388 |
| MS.gene68749.t1 | MTR_1g106200 | 38.791 | 513 | 275 | 9 | 13 | 493 | 31 | 536 | 6.04e-115 | 352 |
| MS.gene68749.t1 | MTR_1g106910 | 37.853 | 531 | 288 | 11 | 13 | 510 | 31 | 552 | 1.38e-113 | 348 |
| MS.gene68749.t1 | MTR_1g106770 | 35.946 | 523 | 295 | 9 | 20 | 510 | 4 | 518 | 1.31e-110 | 340 |
| MS.gene68749.t1 | MTR_1g106790 | 36.723 | 531 | 294 | 11 | 13 | 510 | 31 | 552 | 9.58e-110 | 339 |
| MS.gene68749.t1 | MTR_1g106200 | 36.062 | 513 | 256 | 9 | 13 | 493 | 37 | 509 | 1.58e-102 | 319 |
| MS.gene68749.t1 | MTR_3g103610 | 33.524 | 525 | 309 | 14 | 25 | 534 | 241 | 740 | 1.07e-76 | 256 |
| MS.gene68749.t1 | MTR_1g017020 | 31.881 | 505 | 323 | 9 | 39 | 534 | 411 | 903 | 8.42e-76 | 257 |
| MS.gene68749.t1 | MTR_4g121520 | 31.373 | 204 | 110 | 5 | 276 | 477 | 223 | 398 | 1.74e-24 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68749.t1 | AT4G38650 | 65.434 | 541 | 180 | 3 | 1 | 534 | 22 | 562 | 0.0 | 753 |
| MS.gene68749.t1 | AT4G38300 | 71.483 | 263 | 64 | 2 | 163 | 424 | 12 | 264 | 9.20e-138 | 400 |
| MS.gene68749.t1 | AT4G33840 | 37.163 | 557 | 305 | 9 | 13 | 534 | 25 | 571 | 8.64e-132 | 395 |
| MS.gene68749.t1 | AT4G33830 | 38.768 | 552 | 292 | 11 | 13 | 529 | 26 | 566 | 1.38e-129 | 390 |
| MS.gene68749.t1 | AT4G33860 | 39.130 | 529 | 283 | 10 | 13 | 510 | 25 | 545 | 1.00e-127 | 385 |
| MS.gene68749.t1 | AT2G14690 | 35.436 | 539 | 318 | 12 | 13 | 530 | 32 | 561 | 2.31e-101 | 317 |
| MS.gene68749.t1 | AT4G33810 | 37.736 | 424 | 252 | 6 | 64 | 481 | 49 | 466 | 1.48e-99 | 311 |
| MS.gene68749.t1 | AT4G33810 | 37.736 | 424 | 252 | 6 | 64 | 481 | 49 | 466 | 1.48e-99 | 311 |
| MS.gene68749.t1 | AT4G33810 | 37.736 | 424 | 252 | 6 | 64 | 481 | 89 | 506 | 8.12e-99 | 310 |
| MS.gene68749.t1 | AT4G33810 | 37.736 | 424 | 252 | 6 | 64 | 481 | 89 | 506 | 8.12e-99 | 310 |
| MS.gene68749.t1 | AT4G33810 | 37.736 | 424 | 252 | 6 | 64 | 481 | 89 | 506 | 8.12e-99 | 310 |
| MS.gene68749.t1 | AT4G33820 | 36.830 | 429 | 259 | 7 | 64 | 486 | 89 | 511 | 9.02e-93 | 295 |
| MS.gene68749.t1 | AT1G58370 | 32.016 | 506 | 322 | 10 | 39 | 534 | 421 | 914 | 8.45e-79 | 265 |
| MS.gene68749.t1 | AT1G58370 | 32.016 | 506 | 322 | 10 | 39 | 534 | 449 | 942 | 2.09e-78 | 265 |
| MS.gene68749.t1 | AT1G10050 | 33.543 | 477 | 301 | 10 | 65 | 534 | 596 | 1063 | 6.46e-74 | 254 |
| MS.gene68749.t1 | AT1G10050 | 33.543 | 477 | 301 | 10 | 65 | 534 | 596 | 1063 | 6.46e-74 | 254 |
| MS.gene68749.t1 | AT1G10050 | 33.543 | 477 | 301 | 10 | 65 | 534 | 628 | 1095 | 6.55e-74 | 254 |
| MS.gene68749.t1 | AT4G08160 | 30.989 | 526 | 331 | 11 | 25 | 534 | 240 | 749 | 1.12e-69 | 238 |
| MS.gene68749.t1 | AT4G08160 | 33.489 | 427 | 266 | 8 | 25 | 442 | 240 | 657 | 3.85e-63 | 218 |
Find 105 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAGGAGAATATAGAATT+AGG | 0.197889 | 3.2:+92982331 | MS.gene68749:CDS |
| TTATTTGTAGGCAATTTATT+TGG | 0.199684 | 3.2:+92982092 | MS.gene68749:intron |
| ACCCATGCAGGATTGTATTT+AGG | 0.215174 | 3.2:-92981510 | None:intergenic |
| GGGGTTTCTTCTTCTTTCTA+TGG | 0.261359 | 3.2:+92980241 | MS.gene68749:CDS |
| CCCATGCAGGATTGTATTTA+GGG | 0.265487 | 3.2:-92981509 | None:intergenic |
| TCTTTGAAAACGAGCTTAAA+TGG | 0.282741 | 3.2:+92981373 | MS.gene68749:CDS |
| GCATGGGTTCTTAACCTTAC+AGG | 0.285919 | 3.2:+92981525 | MS.gene68749:CDS |
| CTCCATTGGTGGTGAGTAAA+TGG | 0.299076 | 3.2:-92981070 | None:intergenic |
| CTCTAACAAATTGCATCATT+TGG | 0.305368 | 3.2:-92981443 | None:intergenic |
| CCTTGTAATTTCCTTCCATT+AGG | 0.307008 | 3.2:-92981231 | None:intergenic |
| TTCACAAACCAATTCTGATA+TGG | 0.315882 | 3.2:-92981333 | None:intergenic |
| AAGAGCTATCCTAGACAAAT+TGG | 0.323111 | 3.2:+92981890 | MS.gene68749:CDS |
| TGTAAGCAGTAGAGTCATAT+AGG | 0.332357 | 3.2:-92980348 | None:intergenic |
| GCGATAGCAAAGACCATTCT+TGG | 0.334413 | 3.2:+92981303 | MS.gene68749:CDS |
| CTTGTAATTTCCTTCCATTA+GGG | 0.341062 | 3.2:-92981230 | None:intergenic |
| ATATCAAAAGACTTTCCTAT+TGG | 0.362210 | 3.2:+92981276 | MS.gene68749:CDS |
| CGTTGTCTGTGAGGCACATT+TGG | 0.362520 | 3.2:-92982197 | None:intergenic |
| GCAACATACCATATCAGAAT+TGG | 0.364428 | 3.2:+92981325 | MS.gene68749:CDS |
| GTAAGCAGTAGAGTCATATA+GGG | 0.368725 | 3.2:-92980347 | None:intergenic |
| GCTCTTATAAGTGGAAGATT+TGG | 0.368945 | 3.2:-92981873 | None:intergenic |
| CCACCGTAAAGTGGCTTCTC+TGG | 0.371358 | 3.2:-92980500 | None:intergenic |
| ATGAGACATATAACTGTATT+GGG | 0.377080 | 3.2:+92980903 | MS.gene68749:CDS |
| TACAGATTCAGTTATGATAA+AGG | 0.377300 | 3.2:+92980862 | MS.gene68749:CDS |
| TGGACAGCACTTCATCCATA+TGG | 0.380084 | 3.2:+92982168 | MS.gene68749:CDS |
| AATGAGACATATAACTGTAT+TGG | 0.393839 | 3.2:+92980902 | MS.gene68749:CDS |
| CATCCAGAGAAGCCACTTTA+CGG | 0.403538 | 3.2:+92980497 | MS.gene68749:CDS |
| CTTAGGAGAATATAGAATTA+GGG | 0.404134 | 3.2:+92982332 | MS.gene68749:CDS |
| ATCAGAATTGGTTTGTGAAA+CGG | 0.414114 | 3.2:+92981337 | MS.gene68749:CDS |
| TGGCAAACTGGTCGTGTAGA+AGG | 0.419661 | 3.2:+92982270 | MS.gene68749:CDS |
| CTTCTTCAAGAGTGGCAAAC+TGG | 0.421800 | 3.2:+92982258 | MS.gene68749:CDS |
| CAGTGAATGGGATAATGCTT+TGG | 0.423472 | 3.2:+92982148 | MS.gene68749:CDS |
| TTCTCACACCCTTCAGTGAA+TGG | 0.434692 | 3.2:+92982135 | MS.gene68749:CDS |
| CACATTTGGTAGCACCCATA+TGG | 0.442952 | 3.2:-92982183 | None:intergenic |
| CAACACTAGATCTTCCCGTT+TGG | 0.443376 | 3.2:+92981913 | MS.gene68749:CDS |
| ATAAGAGAACTAAGACAATA+TGG | 0.448976 | 3.2:+92981807 | MS.gene68749:CDS |
| TGCTACATTTCATTTCTTTG+AGG | 0.453293 | 3.2:+92981680 | MS.gene68749:CDS |
| AAGAAATGAAATGTAGCATT+GGG | 0.454110 | 3.2:-92981675 | None:intergenic |
| CAGTGTTGATGATATATTGT+TGG | 0.461856 | 3.2:-92981099 | None:intergenic |
| ATCAATCTCAGTAAGCCAAA+CGG | 0.466197 | 3.2:-92981928 | None:intergenic |
| ATCTTAACTGTGTACCTGTA+AGG | 0.467889 | 3.2:-92981539 | None:intergenic |
| TCAATCTCAGTAAGCCAAAC+GGG | 0.472110 | 3.2:-92981927 | None:intergenic |
| AAAGAAATGAAATGTAGCAT+TGG | 0.480004 | 3.2:-92981676 | None:intergenic |
| CAAAACAGAATTCATACATT+GGG | 0.480784 | 3.2:+92981602 | MS.gene68749:CDS |
| GATTTCTACGAACAAAGGCT+TGG | 0.482875 | 3.2:+92981651 | MS.gene68749:CDS |
| CCACTTTACGGTGGAGGAGG+AGG | 0.484097 | 3.2:+92980509 | MS.gene68749:CDS |
| GTTCATGTATCAGACCCTAA+TGG | 0.488462 | 3.2:+92981216 | MS.gene68749:CDS |
| TTTGCTATCGCAGAGCCAAT+AGG | 0.489645 | 3.2:-92981291 | None:intergenic |
| AAATTAAGTCACAGTGTCAC+AGG | 0.491069 | 3.2:-92982423 | None:intergenic |
| TTTATTTGGAACAAGTATTG+AGG | 0.493659 | 3.2:+92982106 | MS.gene68749:CDS |
| AAATGACCAACATCCACGTT+TGG | 0.493661 | 3.2:-92980936 | None:intergenic |
| GGACAGCACTTCATCCATAT+GGG | 0.495243 | 3.2:+92982169 | MS.gene68749:CDS |
| TCTAGGATAGCTCTTATAAG+TGG | 0.496749 | 3.2:-92981882 | None:intergenic |
| AAGCCACTTTACGGTGGAGG+AGG | 0.499159 | 3.2:+92980506 | MS.gene68749:CDS |
| TTCATAAACAAAGTTGCTAA+AGG | 0.499339 | 3.2:-92981720 | None:intergenic |
| GTTGGTTGATTCTCCATTGG+TGG | 0.504409 | 3.2:-92981081 | None:intergenic |
| GATTTCAACAACTTACCATC+AGG | 0.505931 | 3.2:+92982219 | MS.gene68749:CDS |
| CCTCCTCCTCCACCGTAAAG+TGG | 0.507893 | 3.2:-92980509 | None:intergenic |
| ATTGTTGGTTGATTCTCCAT+TGG | 0.513327 | 3.2:-92981084 | None:intergenic |
| TCTCACACCCTTCAGTGAAT+GGG | 0.515758 | 3.2:+92982136 | MS.gene68749:CDS |
| TTATTTGGAACAAGTATTGA+GGG | 0.519096 | 3.2:+92982107 | MS.gene68749:CDS |
| ATCTGAGTTGTGAAAGAAGA+TGG | 0.523796 | 3.2:-92981002 | None:intergenic |
| CTAGTGTTGCCAATTTGTCT+AGG | 0.527390 | 3.2:-92981899 | None:intergenic |
| ATATGGTATGTTGCCAAGAA+TGG | 0.540598 | 3.2:-92981316 | None:intergenic |
| ACTTTGATTTCTACGAACAA+AGG | 0.545752 | 3.2:+92981646 | MS.gene68749:CDS |
| ACAAAACAGAATTCATACAT+TGG | 0.546953 | 3.2:+92981601 | MS.gene68749:CDS |
| AAGATGGTAGATGAATTTGA+AGG | 0.553423 | 3.2:-92980986 | None:intergenic |
| GAGAAGCCACTTTACGGTGG+AGG | 0.555307 | 3.2:+92980503 | MS.gene68749:CDS |
| TTGGAACAAGTATTGAGGGA+AGG | 0.561612 | 3.2:+92982111 | MS.gene68749:CDS |
| AGCATTATCCCATTCACTGA+AGG | 0.566045 | 3.2:-92982144 | None:intergenic |
| ATCTTCTTTCACAACTCAGA+TGG | 0.566431 | 3.2:+92981004 | MS.gene68749:CDS |
| AGATTATAGAAGACAAGTGA+AGG | 0.569889 | 3.2:-92980581 | None:intergenic |
| ACCCTAAATACAATCCTGCA+TGG | 0.572180 | 3.2:+92981508 | MS.gene68749:CDS |
| ATGGATGGAATTGGTCTCGA+GGG | 0.573124 | 3.2:+92981837 | MS.gene68749:CDS |
| CTCAGATGGTAAAGATCATG+TGG | 0.575507 | 3.2:+92981018 | MS.gene68749:CDS |
| CACACTTGATCATGATACTC+AGG | 0.577347 | 3.2:+92981959 | MS.gene68749:CDS |
| CCTAATGGAAGGAAATTACA+AGG | 0.585093 | 3.2:+92981231 | MS.gene68749:CDS |
| TCAACTTTCTCTCTATGTAG+AGG | 0.586344 | 3.2:+92982381 | MS.gene68749:CDS |
| TGTTGGTCATTTCTCAAAGG+CGG | 0.587726 | 3.2:+92980947 | MS.gene68749:CDS |
| GCATTATCCCATTCACTGAA+GGG | 0.590706 | 3.2:-92982143 | None:intergenic |
| CAACTTACCATCAGGTGATG+TGG | 0.598575 | 3.2:+92982227 | MS.gene68749:CDS |
| CCCTAAATACAATCCTGCAT+GGG | 0.602674 | 3.2:+92981509 | MS.gene68749:CDS |
| GGATGTTGGTCATTTCTCAA+AGG | 0.604605 | 3.2:+92980944 | MS.gene68749:CDS |
| GTCTGATACATGAACAGTGA+CGG | 0.610322 | 3.2:-92981208 | None:intergenic |
| TATGGATGGAATTGGTCTCG+AGG | 0.616485 | 3.2:+92981836 | MS.gene68749:CDS |
| GCCAACAAAATCATAGCTAG+AGG | 0.617131 | 3.2:+92981465 | MS.gene68749:CDS |
| CAACAACACCAACACGAACA+CGG | 0.618184 | 3.2:+92980553 | MS.gene68749:CDS |
| TCTGCCTTCATGAGGCTCTG+TGG | 0.618660 | 3.2:-92981400 | None:intergenic |
| ATGTATCAGACCCTAATGGA+AGG | 0.621861 | 3.2:+92981220 | MS.gene68749:CDS |
| TAGTTGACTCTGCCTTCATG+AGG | 0.625434 | 3.2:-92981408 | None:intergenic |
| TGGATAAACTTCTTCAAGAG+TGG | 0.627938 | 3.2:+92982250 | MS.gene68749:CDS |
| TATGCCACAGAGCCTCATGA+AGG | 0.641188 | 3.2:+92981396 | MS.gene68749:CDS |
| TTATCCACCACATCACCTGA+TGG | 0.643051 | 3.2:-92982234 | None:intergenic |
| AATTAAGTCACAGTGTCACA+GGG | 0.644584 | 3.2:-92982422 | None:intergenic |
| CTTACCATCAGGTGATGTGG+TGG | 0.645932 | 3.2:+92982230 | MS.gene68749:CDS |
| AGCCATTTACTCACCACCAA+TGG | 0.646406 | 3.2:+92981068 | MS.gene68749:CDS |
| ATTCAGTTATGATAAAGGCA+AGG | 0.650648 | 3.2:+92980867 | MS.gene68749:CDS |
| GAAGGTATCACAGATGAGCA+TGG | 0.651877 | 3.2:+92982288 | MS.gene68749:CDS |
| AGGTGAAGCCGTGTTCGTGT+TGG | 0.662305 | 3.2:-92980561 | None:intergenic |
| GTAAGGTTAAGAACCCATGC+AGG | 0.663112 | 3.2:-92981522 | None:intergenic |
| TAAGCAGTAGAGTCATATAG+GGG | 0.663519 | 3.2:-92980346 | None:intergenic |
| TGACTCTACTGCTTACACTC+AGG | 0.668323 | 3.2:+92980354 | MS.gene68749:CDS |
| GGCTGCTACAGTATGGGTGA+AGG | 0.668347 | 3.2:+92980832 | MS.gene68749:intron |
| GCGTTGACGCTTATATCTCA+CGG | 0.669191 | 3.2:+92981784 | MS.gene68749:CDS |
| CCAGAGAAGCCACTTTACGG+TGG | 0.680549 | 3.2:+92980500 | MS.gene68749:CDS |
| TGTTGAAATCGTTGTCTGTG+AGG | 0.696161 | 3.2:-92982206 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAATTGAATCAATAAA+AGG | - | chr3.2:92980279-92980298 | None:intergenic | 15.0% |
| !! | TTATTTGTAGGCAATTTATT+TGG | + | chr3.2:92982092-92982111 | MS.gene68749:intron | 20.0% |
| !!! | GATAGATAATATGTTGTTTT+TGG | - | chr3.2:92981132-92981151 | None:intergenic | 20.0% |
| ! | AAAGAAATGAAATGTAGCAT+TGG | - | chr3.2:92981679-92981698 | None:intergenic | 25.0% |
| ! | AAGAAATGAAATGTAGCATT+GGG | - | chr3.2:92981678-92981697 | None:intergenic | 25.0% |
| ! | AATGAGACATATAACTGTAT+TGG | + | chr3.2:92980902-92980921 | MS.gene68749:CDS | 25.0% |
| ! | ACAAAACAGAATTCATACAT+TGG | + | chr3.2:92981601-92981620 | MS.gene68749:CDS | 25.0% |
| ! | ATAAGAGAACTAAGACAATA+TGG | + | chr3.2:92981807-92981826 | MS.gene68749:CDS | 25.0% |
| ! | ATATCAAAAGACTTTCCTAT+TGG | + | chr3.2:92981276-92981295 | MS.gene68749:CDS | 25.0% |
| ! | ATGAGACATATAACTGTATT+GGG | + | chr3.2:92980903-92980922 | MS.gene68749:CDS | 25.0% |
| ! | CAAAACAGAATTCATACATT+GGG | + | chr3.2:92981602-92981621 | MS.gene68749:CDS | 25.0% |
| ! | CTTAGGAGAATATAGAATTA+GGG | + | chr3.2:92982332-92982351 | MS.gene68749:CDS | 25.0% |
| ! | TACAGATTCAGTTATGATAA+AGG | + | chr3.2:92980862-92980881 | MS.gene68749:CDS | 25.0% |
| ! | TCTTAGGAGAATATAGAATT+AGG | + | chr3.2:92982331-92982350 | MS.gene68749:CDS | 25.0% |
| ! | TTCATAAACAAAGTTGCTAA+AGG | - | chr3.2:92981723-92981742 | None:intergenic | 25.0% |
| !! | GTATGAATTCTGTTTTGTAT+TGG | - | chr3.2:92981599-92981618 | None:intergenic | 25.0% |
| !! | TTTATTTGGAACAAGTATTG+AGG | + | chr3.2:92982106-92982125 | MS.gene68749:CDS | 25.0% |
| !!! | AAGACAATATGGTGTTTTTA+TGG | + | chr3.2:92981818-92981837 | MS.gene68749:CDS | 25.0% |
| !!! | TTATTTGGAACAAGTATTGA+GGG | + | chr3.2:92982107-92982126 | MS.gene68749:CDS | 25.0% |
| AAGATGGTAGATGAATTTGA+AGG | - | chr3.2:92980989-92981008 | None:intergenic | 30.0% | |
| AGATTATAGAAGACAAGTGA+AGG | - | chr3.2:92980584-92980603 | None:intergenic | 30.0% | |
| ATTAAAAATGATTCCGTTGC+CGG | + | chr3.2:92980699-92980718 | MS.gene68749:intron | 30.0% | |
| ATTCAGTTATGATAAAGGCA+AGG | + | chr3.2:92980867-92980886 | MS.gene68749:CDS | 30.0% | |
| CTCTAACAAATTGCATCATT+TGG | - | chr3.2:92981446-92981465 | None:intergenic | 30.0% | |
| CTTGTAATTTCCTTCCATTA+GGG | - | chr3.2:92981233-92981252 | None:intergenic | 30.0% | |
| GGATTATTGTTGATGTCATT+GGG | + | chr3.2:92980780-92980799 | MS.gene68749:intron | 30.0% | |
| TGCCTACAAATAAAGAATGA+AGG | - | chr3.2:92982085-92982104 | None:intergenic | 30.0% | |
| TGCTACATTTCATTTCTTTG+AGG | + | chr3.2:92981680-92981699 | MS.gene68749:CDS | 30.0% | |
| TTCACAAACCAATTCTGATA+TGG | - | chr3.2:92981336-92981355 | None:intergenic | 30.0% | |
| ! | ACTTTGATTTCTACGAACAA+AGG | + | chr3.2:92981646-92981665 | MS.gene68749:CDS | 30.0% |
| ! | ATGGTTCACATAGCTTTTAT+GGG | + | chr3.2:92982307-92982326 | MS.gene68749:CDS | 30.0% |
| ! | GACACTATCTATTCTTTTTC+TGG | + | chr3.2:92980611-92980630 | MS.gene68749:CDS | 30.0% |
| ! | TAGAGGACACAATATTTTCT+GGG | + | chr3.2:92981482-92981501 | MS.gene68749:CDS | 30.0% |
| ! | TCTTTGAAAACGAGCTTAAA+TGG | + | chr3.2:92981373-92981392 | MS.gene68749:CDS | 30.0% |
| ! | TGCCTTCATTCTTTATTTGT+AGG | + | chr3.2:92982080-92982099 | MS.gene68749:intron | 30.0% |
| !! | ATCAGAATTGGTTTGTGAAA+CGG | + | chr3.2:92981337-92981356 | MS.gene68749:CDS | 30.0% |
| !! | CAATATGGTGTTTTTATGGA+TGG | + | chr3.2:92981822-92981841 | MS.gene68749:CDS | 30.0% |
| !! | CAGTGTTGATGATATATTGT+TGG | - | chr3.2:92981102-92981121 | None:intergenic | 30.0% |
| AAGAGCTATCCTAGACAAAT+TGG | + | chr3.2:92981890-92981909 | MS.gene68749:CDS | 35.0% | |
| ATAATCCGTTGTAGTCTAGT+TGG | - | chr3.2:92980767-92980786 | None:intergenic | 35.0% | |
| ATATGGTATGTTGCCAAGAA+TGG | - | chr3.2:92981319-92981338 | None:intergenic | 35.0% | |
| ATCAATCTCAGTAAGCCAAA+CGG | - | chr3.2:92981931-92981950 | None:intergenic | 35.0% | |
| ATCTGAGTTGTGAAAGAAGA+TGG | - | chr3.2:92981005-92981024 | None:intergenic | 35.0% | |
| ATCTTAACTGTGTACCTGTA+AGG | - | chr3.2:92981542-92981561 | None:intergenic | 35.0% | |
| ATCTTCTTTCACAACTCAGA+TGG | + | chr3.2:92981004-92981023 | MS.gene68749:CDS | 35.0% | |
| CCTAATGGAAGGAAATTACA+AGG | + | chr3.2:92981231-92981250 | MS.gene68749:CDS | 35.0% | |
| CCTTGTAATTTCCTTCCATT+AGG | - | chr3.2:92981234-92981253 | None:intergenic | 35.0% | |
| CGGATTATTGTTGATGTCAT+TGG | + | chr3.2:92980779-92980798 | MS.gene68749:intron | 35.0% | |
| GATTTCAACAACTTACCATC+AGG | + | chr3.2:92982219-92982238 | MS.gene68749:CDS | 35.0% | |
| GCAACATACCATATCAGAAT+TGG | + | chr3.2:92981325-92981344 | MS.gene68749:CDS | 35.0% | |
| GCTCTTATAAGTGGAAGATT+TGG | - | chr3.2:92981876-92981895 | None:intergenic | 35.0% | |
| GTAAGCAGTAGAGTCATATA+GGG | - | chr3.2:92980350-92980369 | None:intergenic | 35.0% | |
| TAAGCAGTAGAGTCATATAG+GGG | - | chr3.2:92980349-92980368 | None:intergenic | 35.0% | |
| TCAACTTTCTCTCTATGTAG+AGG | + | chr3.2:92982381-92982400 | MS.gene68749:CDS | 35.0% | |
| TGGATAAACTTCTTCAAGAG+TGG | + | chr3.2:92982250-92982269 | MS.gene68749:CDS | 35.0% | |
| TGTAAGCAGTAGAGTCATAT+AGG | - | chr3.2:92980351-92980370 | None:intergenic | 35.0% | |
| TTAAAAATGATTCCGTTGCC+GGG | + | chr3.2:92980700-92980719 | MS.gene68749:intron | 35.0% | |
| ! | ATTGTTGGTTGATTCTCCAT+TGG | - | chr3.2:92981087-92981106 | None:intergenic | 35.0% |
| ! | CATAGCTTTTATGGGTTCTT+AGG | + | chr3.2:92982315-92982334 | MS.gene68749:CDS | 35.0% |
| ! | CATGGTTCACATAGCTTTTA+TGG | + | chr3.2:92982306-92982325 | MS.gene68749:CDS | 35.0% |
| ! | CTAGAGGACACAATATTTTC+TGG | + | chr3.2:92981481-92981500 | MS.gene68749:CDS | 35.0% |
| ! | TCCTCTAGCTATGATTTTGT+TGG | - | chr3.2:92981469-92981488 | None:intergenic | 35.0% |
| ! | TCTAGGATAGCTCTTATAAG+TGG | - | chr3.2:92981885-92981904 | None:intergenic | 35.0% |
| !! | CGATATTGTTTTGTTGCAGA+TGG | + | chr3.2:92980322-92980341 | MS.gene68749:intron | 35.0% |
| !! | GGTGTTTTTATGGATGGAAT+TGG | + | chr3.2:92981828-92981847 | MS.gene68749:CDS | 35.0% |
| AAATGACCAACATCCACGTT+TGG | - | chr3.2:92980939-92980958 | None:intergenic | 40.0% | |
| ACCCATGCAGGATTGTATTT+AGG | - | chr3.2:92981513-92981532 | None:intergenic | 40.0% | |
| ACCCTAAATACAATCCTGCA+TGG | + | chr3.2:92981508-92981527 | MS.gene68749:CDS | 40.0% | |
| AGCATTATCCCATTCACTGA+AGG | - | chr3.2:92982147-92982166 | None:intergenic | 40.0% | |
| ATGTATCAGACCCTAATGGA+AGG | + | chr3.2:92981220-92981239 | MS.gene68749:CDS | 40.0% | |
| CACACTTGATCATGATACTC+AGG | + | chr3.2:92981959-92981978 | MS.gene68749:CDS | 40.0% | |
| CACGTCAGCATATATAACGA+TGG | - | chr3.2:92980813-92980832 | None:intergenic | 40.0% | |
| CAGTGAATGGGATAATGCTT+TGG | + | chr3.2:92982148-92982167 | MS.gene68749:CDS | 40.0% | |
| CATCGTTATATATGCTGACG+TGG | + | chr3.2:92980811-92980830 | MS.gene68749:intron | 40.0% | |
| CCCATGCAGGATTGTATTTA+GGG | - | chr3.2:92981512-92981531 | None:intergenic | 40.0% | |
| CCCTAAATACAATCCTGCAT+GGG | + | chr3.2:92981509-92981528 | MS.gene68749:CDS | 40.0% | |
| CCTAACCAACTAGACTACAA+CGG | + | chr3.2:92980759-92980778 | MS.gene68749:intron | 40.0% | |
| CTAGTGTTGCCAATTTGTCT+AGG | - | chr3.2:92981902-92981921 | None:intergenic | 40.0% | |
| CTCAGATGGTAAAGATCATG+TGG | + | chr3.2:92981018-92981037 | MS.gene68749:CDS | 40.0% | |
| GATTTCTACGAACAAAGGCT+TGG | + | chr3.2:92981651-92981670 | MS.gene68749:CDS | 40.0% | |
| GCATTATCCCATTCACTGAA+GGG | - | chr3.2:92982146-92982165 | None:intergenic | 40.0% | |
| GCCAACAAAATCATAGCTAG+AGG | + | chr3.2:92981465-92981484 | MS.gene68749:CDS | 40.0% | |
| GGATGTTGGTCATTTCTCAA+AGG | + | chr3.2:92980944-92980963 | MS.gene68749:CDS | 40.0% | |
| GGGGTTTCTTCTTCTTTCTA+TGG | + | chr3.2:92980241-92980260 | MS.gene68749:CDS | 40.0% | |
| GTCTAGTTGGTTAGGATACT+CGG | - | chr3.2:92980754-92980773 | None:intergenic | 40.0% | |
| GTCTGATACATGAACAGTGA+CGG | - | chr3.2:92981211-92981230 | None:intergenic | 40.0% | |
| GTTCATGTATCAGACCCTAA+TGG | + | chr3.2:92981216-92981235 | MS.gene68749:CDS | 40.0% | |
| TCAATCTCAGTAAGCCAAAC+GGG | - | chr3.2:92981930-92981949 | None:intergenic | 40.0% | |
| TGTTGAAATCGTTGTCTGTG+AGG | - | chr3.2:92982209-92982228 | None:intergenic | 40.0% | |
| TGTTGGTCATTTCTCAAAGG+CGG | + | chr3.2:92980947-92980966 | MS.gene68749:CDS | 40.0% | |
| TTGATCATGATACTCAGGTG+AGG | + | chr3.2:92981964-92981983 | MS.gene68749:intron | 40.0% | |
| ! | TTTTAGCCAAACGTGGATGT+TGG | + | chr3.2:92980930-92980949 | MS.gene68749:CDS | 40.0% |
| !! | TTGGAACAAGTATTGAGGGA+AGG | + | chr3.2:92982111-92982130 | MS.gene68749:CDS | 40.0% |
| AGCCATTTACTCACCACCAA+TGG | + | chr3.2:92981068-92981087 | MS.gene68749:CDS | 45.0% | |
| CAACAACACCAACACGAACA+CGG | + | chr3.2:92980553-92980572 | MS.gene68749:CDS | 45.0% | |
| CAACACTAGATCTTCCCGTT+TGG | + | chr3.2:92981913-92981932 | MS.gene68749:CDS | 45.0% | |
| CAACTTACCATCAGGTGATG+TGG | + | chr3.2:92982227-92982246 | MS.gene68749:CDS | 45.0% | |
| CCGTTGTAGTCTAGTTGGTT+AGG | - | chr3.2:92980762-92980781 | None:intergenic | 45.0% | |
| CTTCTTCAAGAGTGGCAAAC+TGG | + | chr3.2:92982258-92982277 | MS.gene68749:CDS | 45.0% | |
| GCATGGGTTCTTAACCTTAC+AGG | + | chr3.2:92981525-92981544 | MS.gene68749:CDS | 45.0% | |
| GCGATAGCAAAGACCATTCT+TGG | + | chr3.2:92981303-92981322 | MS.gene68749:CDS | 45.0% | |
| GGACAGCACTTCATCCATAT+GGG | + | chr3.2:92982169-92982188 | MS.gene68749:CDS | 45.0% | |
| GTAAGGTTAAGAACCCATGC+AGG | - | chr3.2:92981525-92981544 | None:intergenic | 45.0% | |
| TCTCACACCCTTCAGTGAAT+GGG | + | chr3.2:92982136-92982155 | MS.gene68749:CDS | 45.0% | |
| TGACTCTACTGCTTACACTC+AGG | + | chr3.2:92980354-92980373 | MS.gene68749:CDS | 45.0% | |
| TGGACAGCACTTCATCCATA+TGG | + | chr3.2:92982168-92982187 | MS.gene68749:CDS | 45.0% | |
| TTATCCACCACATCACCTGA+TGG | - | chr3.2:92982237-92982256 | None:intergenic | 45.0% | |
| TTCTCACACCCTTCAGTGAA+TGG | + | chr3.2:92982135-92982154 | MS.gene68749:CDS | 45.0% | |
| ! | ATGGATGGAATTGGTCTCGA+GGG | + | chr3.2:92981837-92981856 | MS.gene68749:CDS | 45.0% |
| ! | CACATTTGGTAGCACCCATA+TGG | - | chr3.2:92982186-92982205 | None:intergenic | 45.0% |
| ! | CATCCAGAGAAGCCACTTTA+CGG | + | chr3.2:92980497-92980516 | MS.gene68749:CDS | 45.0% |
| ! | GCGTTGACGCTTATATCTCA+CGG | + | chr3.2:92981784-92981803 | MS.gene68749:CDS | 45.0% |
| ! | GTTGGTTGATTCTCCATTGG+TGG | - | chr3.2:92981084-92981103 | None:intergenic | 45.0% |
| ! | TAGTTGACTCTGCCTTCATG+AGG | - | chr3.2:92981411-92981430 | None:intergenic | 45.0% |
| ! | TATGGATGGAATTGGTCTCG+AGG | + | chr3.2:92981836-92981855 | MS.gene68749:CDS | 45.0% |
| ! | TTTGCTATCGCAGAGCCAAT+AGG | - | chr3.2:92981294-92981313 | None:intergenic | 45.0% |
| !! | CTCCATTGGTGGTGAGTAAA+TGG | - | chr3.2:92981073-92981092 | None:intergenic | 45.0% |
| !! | GAAGGTATCACAGATGAGCA+TGG | + | chr3.2:92982288-92982307 | MS.gene68749:CDS | 45.0% |
| CGTTGTCTGTGAGGCACATT+TGG | - | chr3.2:92982200-92982219 | None:intergenic | 50.0% | |
| CTACTGCTTACACTCAGGTG+AGG | + | chr3.2:92980359-92980378 | MS.gene68749:intron | 50.0% | |
| CTTACCATCAGGTGATGTGG+TGG | + | chr3.2:92982230-92982249 | MS.gene68749:CDS | 50.0% | |
| GTAGCTAGCTAGCTAGCTAG+AGG | + | chr3.2:92981986-92982005 | MS.gene68749:intron | 50.0% | |
| TATGCCACAGAGCCTCATGA+AGG | + | chr3.2:92981396-92981415 | MS.gene68749:CDS | 50.0% | |
| TGACGTGGCTGCTACAGTAT+GGG | + | chr3.2:92980826-92980845 | MS.gene68749:intron | 50.0% | |
| TGGCAAACTGGTCGTGTAGA+AGG | + | chr3.2:92982270-92982289 | MS.gene68749:CDS | 50.0% | |
| !! | GGGACAGTTTTAGCCAAACG+TGG | + | chr3.2:92980923-92980942 | MS.gene68749:CDS | 50.0% |
| AGGTGAAGCCGTGTTCGTGT+TGG | - | chr3.2:92980564-92980583 | None:intergenic | 55.0% | |
| CCACCGTAAAGTGGCTTCTC+TGG | - | chr3.2:92980503-92980522 | None:intergenic | 55.0% | |
| CTGACGTGGCTGCTACAGTA+TGG | + | chr3.2:92980825-92980844 | MS.gene68749:intron | 55.0% | |
| GGCTGCTACAGTATGGGTGA+AGG | + | chr3.2:92980832-92980851 | MS.gene68749:intron | 55.0% | |
| TCTGCCTTCATGAGGCTCTG+TGG | - | chr3.2:92981403-92981422 | None:intergenic | 55.0% | |
| ! | AAGCCACTTTACGGTGGAGG+AGG | + | chr3.2:92980506-92980525 | MS.gene68749:CDS | 55.0% |
| ! | CCAGAGAAGCCACTTTACGG+TGG | + | chr3.2:92980500-92980519 | MS.gene68749:CDS | 55.0% |
| ! | GAGAAGCCACTTTACGGTGG+AGG | + | chr3.2:92980503-92980522 | MS.gene68749:CDS | 55.0% |
| AGAGACCCGGGTTCAAGTCC+CGG | - | chr3.2:92980721-92980740 | None:intergenic | 60.0% | |
| CCACTTTACGGTGGAGGAGG+AGG | + | chr3.2:92980509-92980528 | MS.gene68749:CDS | 60.0% | |
| CCTCCTCCTCCACCGTAAAG+TGG | - | chr3.2:92980512-92980531 | None:intergenic | 60.0% | |
| GACTTGAACCCGGGTCTCTC+GGG | + | chr3.2:92980722-92980741 | MS.gene68749:intron | 60.0% | |
| GGACTTGAACCCGGGTCTCT+CGG | + | chr3.2:92980721-92980740 | MS.gene68749:intron | 60.0% | |
| CCGGGTTCAAGTCCCGGCAA+CGG | - | chr3.2:92980715-92980734 | None:intergenic | 65.0% | |
| CCGTTGCCGGGACTTGAACC+CGG | + | chr3.2:92980712-92980731 | MS.gene68749:intron | 65.0% | |
| CGTTGCCGGGACTTGAACCC+GGG | + | chr3.2:92980713-92980732 | MS.gene68749:intron | 65.0% | |
| CGGCTCTCACCCGAGAGACC+CGG | - | chr3.2:92980734-92980753 | None:intergenic | 70.0% | |
| GGCTCTCACCCGAGAGACCC+GGG | - | chr3.2:92980733-92980752 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 92980238 | 92982437 | 92980238 | ID=MS.gene68749 |
| chr3.2 | mRNA | 92980238 | 92982437 | 92980238 | ID=MS.gene68749.t1;Parent=MS.gene68749 |
| chr3.2 | exon | 92980238 | 92980262 | 92980238 | ID=MS.gene68749.t1.exon1;Parent=MS.gene68749.t1 |
| chr3.2 | CDS | 92980238 | 92980262 | 92980238 | ID=cds.MS.gene68749.t1;Parent=MS.gene68749.t1 |
| chr3.2 | exon | 92980341 | 92980375 | 92980341 | ID=MS.gene68749.t1.exon2;Parent=MS.gene68749.t1 |
| chr3.2 | CDS | 92980341 | 92980375 | 92980341 | ID=cds.MS.gene68749.t1;Parent=MS.gene68749.t1 |
| chr3.2 | exon | 92980488 | 92980632 | 92980488 | ID=MS.gene68749.t1.exon3;Parent=MS.gene68749.t1 |
| chr3.2 | CDS | 92980488 | 92980632 | 92980488 | ID=cds.MS.gene68749.t1;Parent=MS.gene68749.t1 |
| chr3.2 | exon | 92980843 | 92981120 | 92980843 | ID=MS.gene68749.t1.exon4;Parent=MS.gene68749.t1 |
| chr3.2 | CDS | 92980843 | 92981120 | 92980843 | ID=cds.MS.gene68749.t1;Parent=MS.gene68749.t1 |
| chr3.2 | exon | 92981195 | 92981980 | 92981195 | ID=MS.gene68749.t1.exon5;Parent=MS.gene68749.t1 |
| chr3.2 | CDS | 92981195 | 92981980 | 92981195 | ID=cds.MS.gene68749.t1;Parent=MS.gene68749.t1 |
| chr3.2 | exon | 92982102 | 92982437 | 92982102 | ID=MS.gene68749.t1.exon6;Parent=MS.gene68749.t1 |
| chr3.2 | CDS | 92982102 | 92982437 | 92982102 | ID=cds.MS.gene68749.t1;Parent=MS.gene68749.t1 |
| Gene Sequence |
| Protein sequence |
